Multiple sequence alignment - TraesCS1B01G219500
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1B01G219500 | chr1B | 100.000 | 5651 | 0 | 0 | 3864 | 9514 | 396602578 | 396596928 | 0.000000e+00 | 10436.0 |
1 | TraesCS1B01G219500 | chr1B | 100.000 | 3371 | 0 | 0 | 1 | 3371 | 396606441 | 396603071 | 0.000000e+00 | 6226.0 |
2 | TraesCS1B01G219500 | chr1B | 88.676 | 1254 | 106 | 9 | 2151 | 3370 | 312927494 | 312926243 | 0.000000e+00 | 1496.0 |
3 | TraesCS1B01G219500 | chr1B | 91.781 | 1095 | 60 | 8 | 2107 | 3174 | 385167220 | 385168311 | 0.000000e+00 | 1496.0 |
4 | TraesCS1B01G219500 | chr1B | 88.106 | 1278 | 122 | 18 | 2107 | 3371 | 401787130 | 401785870 | 0.000000e+00 | 1491.0 |
5 | TraesCS1B01G219500 | chr1B | 87.522 | 1146 | 102 | 7 | 2255 | 3366 | 652524228 | 652523090 | 0.000000e+00 | 1286.0 |
6 | TraesCS1B01G219500 | chr1B | 89.635 | 1013 | 58 | 5 | 2107 | 3074 | 326773105 | 326772095 | 0.000000e+00 | 1245.0 |
7 | TraesCS1B01G219500 | chr1B | 90.777 | 618 | 35 | 11 | 3865 | 4462 | 57106899 | 57107514 | 0.000000e+00 | 806.0 |
8 | TraesCS1B01G219500 | chr1B | 92.578 | 512 | 30 | 7 | 3958 | 4462 | 359443898 | 359444408 | 0.000000e+00 | 728.0 |
9 | TraesCS1B01G219500 | chr1B | 93.617 | 94 | 6 | 0 | 8810 | 8903 | 580632957 | 580632864 | 3.580000e-29 | 141.0 |
10 | TraesCS1B01G219500 | chr1D | 94.949 | 2653 | 105 | 12 | 6023 | 8652 | 295277341 | 295274695 | 0.000000e+00 | 4130.0 |
11 | TraesCS1B01G219500 | chr1D | 91.994 | 2136 | 94 | 22 | 1 | 2106 | 295281719 | 295279631 | 0.000000e+00 | 2926.0 |
12 | TraesCS1B01G219500 | chr1D | 95.831 | 1487 | 44 | 8 | 4554 | 6026 | 295278945 | 295277463 | 0.000000e+00 | 2386.0 |
13 | TraesCS1B01G219500 | chr1D | 97.393 | 537 | 14 | 0 | 8978 | 9514 | 295187337 | 295186801 | 0.000000e+00 | 915.0 |
14 | TraesCS1B01G219500 | chr1D | 88.889 | 108 | 9 | 3 | 8800 | 8905 | 406664967 | 406665073 | 7.750000e-26 | 130.0 |
15 | TraesCS1B01G219500 | chr1D | 98.276 | 58 | 0 | 1 | 4462 | 4519 | 295279636 | 295279580 | 6.080000e-17 | 100.0 |
16 | TraesCS1B01G219500 | chr1A | 94.266 | 1273 | 58 | 7 | 5539 | 6797 | 368369944 | 368368673 | 0.000000e+00 | 1932.0 |
17 | TraesCS1B01G219500 | chr1A | 95.671 | 1155 | 45 | 4 | 7499 | 8651 | 368367689 | 368366538 | 0.000000e+00 | 1851.0 |
18 | TraesCS1B01G219500 | chr1A | 94.747 | 1085 | 39 | 5 | 4462 | 5543 | 368376395 | 368375326 | 0.000000e+00 | 1672.0 |
19 | TraesCS1B01G219500 | chr1A | 92.320 | 625 | 26 | 5 | 8909 | 9514 | 368364919 | 368364298 | 0.000000e+00 | 869.0 |
20 | TraesCS1B01G219500 | chr1A | 95.525 | 514 | 20 | 3 | 6796 | 7307 | 368368353 | 368367841 | 0.000000e+00 | 819.0 |
21 | TraesCS1B01G219500 | chr1A | 94.872 | 351 | 12 | 1 | 1404 | 1754 | 368377053 | 368376709 | 2.340000e-150 | 544.0 |
22 | TraesCS1B01G219500 | chr1A | 96.865 | 319 | 10 | 0 | 1789 | 2107 | 368376707 | 368376389 | 1.410000e-147 | 534.0 |
23 | TraesCS1B01G219500 | chr1A | 96.154 | 130 | 5 | 0 | 8685 | 8814 | 368366538 | 368366409 | 7.480000e-51 | 213.0 |
24 | TraesCS1B01G219500 | chr1A | 94.118 | 102 | 3 | 1 | 7308 | 7409 | 368367804 | 368367706 | 1.650000e-32 | 152.0 |
25 | TraesCS1B01G219500 | chr3B | 94.421 | 1165 | 38 | 2 | 2107 | 3245 | 522241127 | 522242290 | 0.000000e+00 | 1766.0 |
26 | TraesCS1B01G219500 | chr3B | 91.761 | 1238 | 53 | 11 | 2107 | 3316 | 790747349 | 790746133 | 0.000000e+00 | 1676.0 |
27 | TraesCS1B01G219500 | chr3B | 89.164 | 1292 | 99 | 9 | 2107 | 3359 | 508752436 | 508753725 | 0.000000e+00 | 1572.0 |
28 | TraesCS1B01G219500 | chr3B | 94.137 | 614 | 27 | 7 | 3864 | 4476 | 181301813 | 181301208 | 0.000000e+00 | 926.0 |
29 | TraesCS1B01G219500 | chr3B | 95.592 | 363 | 12 | 4 | 4100 | 4462 | 67929066 | 67929424 | 6.410000e-161 | 579.0 |
30 | TraesCS1B01G219500 | chr3B | 95.355 | 366 | 11 | 5 | 4100 | 4465 | 790745364 | 790745005 | 2.300000e-160 | 577.0 |
31 | TraesCS1B01G219500 | chr3B | 93.796 | 274 | 17 | 0 | 3864 | 4137 | 682068548 | 682068821 | 6.880000e-111 | 412.0 |
32 | TraesCS1B01G219500 | chr3A | 89.856 | 1321 | 81 | 16 | 2099 | 3370 | 724741329 | 724740013 | 0.000000e+00 | 1648.0 |
33 | TraesCS1B01G219500 | chr5B | 90.902 | 1242 | 82 | 14 | 2107 | 3319 | 176601886 | 176600647 | 0.000000e+00 | 1639.0 |
34 | TraesCS1B01G219500 | chr5B | 89.846 | 1300 | 88 | 14 | 2107 | 3371 | 43868189 | 43869479 | 0.000000e+00 | 1629.0 |
35 | TraesCS1B01G219500 | chr5B | 90.135 | 1257 | 72 | 11 | 2103 | 3326 | 130923655 | 130924892 | 0.000000e+00 | 1587.0 |
36 | TraesCS1B01G219500 | chr5B | 86.122 | 1297 | 118 | 28 | 2107 | 3359 | 458731739 | 458733017 | 0.000000e+00 | 1341.0 |
37 | TraesCS1B01G219500 | chr5B | 87.310 | 197 | 22 | 3 | 631 | 825 | 643675159 | 643675354 | 1.240000e-53 | 222.0 |
38 | TraesCS1B01G219500 | chr3D | 90.113 | 1244 | 63 | 13 | 2107 | 3311 | 268942688 | 268943910 | 0.000000e+00 | 1561.0 |
39 | TraesCS1B01G219500 | chr3D | 89.050 | 1242 | 89 | 22 | 2106 | 3320 | 609940258 | 609941479 | 0.000000e+00 | 1496.0 |
40 | TraesCS1B01G219500 | chr3D | 96.078 | 357 | 10 | 4 | 4107 | 4463 | 268944825 | 268945177 | 6.410000e-161 | 579.0 |
41 | TraesCS1B01G219500 | chr3D | 94.545 | 275 | 15 | 0 | 3864 | 4138 | 268944536 | 268944810 | 8.830000e-115 | 425.0 |
42 | TraesCS1B01G219500 | chr3D | 96.512 | 86 | 3 | 0 | 8812 | 8897 | 22679060 | 22679145 | 9.960000e-30 | 143.0 |
43 | TraesCS1B01G219500 | chr3D | 96.512 | 86 | 3 | 0 | 8812 | 8897 | 22767898 | 22767813 | 9.960000e-30 | 143.0 |
44 | TraesCS1B01G219500 | chr3D | 95.506 | 89 | 4 | 0 | 8808 | 8896 | 436676896 | 436676984 | 9.960000e-30 | 143.0 |
45 | TraesCS1B01G219500 | chr3D | 93.478 | 92 | 6 | 0 | 8806 | 8897 | 206978506 | 206978597 | 4.630000e-28 | 137.0 |
46 | TraesCS1B01G219500 | chr3D | 90.625 | 96 | 8 | 1 | 8802 | 8896 | 71371425 | 71371520 | 1.000000e-24 | 126.0 |
47 | TraesCS1B01G219500 | chr4B | 91.872 | 1095 | 59 | 12 | 2107 | 3174 | 73279972 | 73278881 | 0.000000e+00 | 1502.0 |
48 | TraesCS1B01G219500 | chr4B | 86.521 | 1328 | 99 | 22 | 2107 | 3371 | 416388677 | 416387367 | 0.000000e+00 | 1387.0 |
49 | TraesCS1B01G219500 | chr4B | 91.497 | 294 | 23 | 2 | 3864 | 4156 | 285614210 | 285613918 | 4.140000e-108 | 403.0 |
50 | TraesCS1B01G219500 | chr4B | 84.127 | 63 | 10 | 0 | 4907 | 4969 | 665560660 | 665560722 | 2.870000e-05 | 62.1 |
51 | TraesCS1B01G219500 | chr4B | 94.444 | 36 | 2 | 0 | 4683 | 4718 | 660956282 | 660956317 | 1.000000e-03 | 56.5 |
52 | TraesCS1B01G219500 | chr6B | 91.221 | 991 | 58 | 12 | 2107 | 3071 | 502312717 | 502313704 | 0.000000e+00 | 1321.0 |
53 | TraesCS1B01G219500 | chr6B | 94.182 | 275 | 16 | 0 | 3864 | 4138 | 308581809 | 308581535 | 4.110000e-113 | 420.0 |
54 | TraesCS1B01G219500 | chr6B | 92.391 | 92 | 7 | 0 | 8812 | 8903 | 48874123 | 48874032 | 2.160000e-26 | 132.0 |
55 | TraesCS1B01G219500 | chr2B | 89.399 | 632 | 43 | 11 | 3864 | 4472 | 407871291 | 407870661 | 0.000000e+00 | 774.0 |
56 | TraesCS1B01G219500 | chr2B | 93.663 | 505 | 30 | 2 | 3957 | 4460 | 302079284 | 302078781 | 0.000000e+00 | 754.0 |
57 | TraesCS1B01G219500 | chr7B | 91.159 | 509 | 38 | 7 | 3956 | 4462 | 285399555 | 285400058 | 0.000000e+00 | 684.0 |
58 | TraesCS1B01G219500 | chr7D | 85.505 | 545 | 64 | 11 | 3898 | 4435 | 267595150 | 267594614 | 1.080000e-153 | 555.0 |
59 | TraesCS1B01G219500 | chr7D | 85.185 | 270 | 35 | 5 | 641 | 907 | 58622928 | 58622661 | 1.220000e-68 | 272.0 |
60 | TraesCS1B01G219500 | chr7A | 84.307 | 274 | 36 | 7 | 638 | 907 | 62883753 | 62883483 | 2.640000e-65 | 261.0 |
61 | TraesCS1B01G219500 | chr5A | 84.364 | 275 | 33 | 10 | 638 | 907 | 641056483 | 641056752 | 2.640000e-65 | 261.0 |
62 | TraesCS1B01G219500 | chr5A | 84.249 | 273 | 32 | 10 | 640 | 907 | 645126059 | 645126325 | 1.230000e-63 | 255.0 |
63 | TraesCS1B01G219500 | chr5A | 83.212 | 274 | 38 | 8 | 638 | 907 | 641117088 | 641117357 | 2.650000e-60 | 244.0 |
64 | TraesCS1B01G219500 | chr5A | 87.065 | 201 | 23 | 3 | 638 | 836 | 540262718 | 540262917 | 3.460000e-54 | 224.0 |
65 | TraesCS1B01G219500 | chr5A | 94.444 | 36 | 2 | 0 | 4683 | 4718 | 701580173 | 701580208 | 1.000000e-03 | 56.5 |
66 | TraesCS1B01G219500 | chr4A | 87.611 | 226 | 23 | 5 | 638 | 860 | 675160309 | 675160086 | 3.410000e-64 | 257.0 |
67 | TraesCS1B01G219500 | chr4A | 86.667 | 225 | 27 | 3 | 638 | 860 | 675219513 | 675219290 | 7.380000e-61 | 246.0 |
68 | TraesCS1B01G219500 | chr4A | 86.222 | 225 | 28 | 3 | 638 | 860 | 675277041 | 675276818 | 3.430000e-59 | 241.0 |
69 | TraesCS1B01G219500 | chr5D | 89.655 | 203 | 17 | 4 | 625 | 825 | 512894200 | 512894400 | 1.230000e-63 | 255.0 |
70 | TraesCS1B01G219500 | chr5D | 89.055 | 201 | 19 | 3 | 638 | 836 | 425984488 | 425984687 | 7.380000e-61 | 246.0 |
71 | TraesCS1B01G219500 | chr5D | 88.360 | 189 | 20 | 2 | 638 | 824 | 512778166 | 512778354 | 9.610000e-55 | 226.0 |
72 | TraesCS1B01G219500 | chr5D | 94.444 | 90 | 5 | 0 | 8812 | 8901 | 421993687 | 421993598 | 1.290000e-28 | 139.0 |
73 | TraesCS1B01G219500 | chr5D | 93.407 | 91 | 6 | 0 | 8808 | 8898 | 551403900 | 551403990 | 1.670000e-27 | 135.0 |
74 | TraesCS1B01G219500 | chr4D | 95.294 | 85 | 3 | 1 | 8812 | 8896 | 16652516 | 16652433 | 5.990000e-27 | 134.0 |
75 | TraesCS1B01G219500 | chr4D | 94.186 | 86 | 5 | 0 | 8812 | 8897 | 414221193 | 414221108 | 2.160000e-26 | 132.0 |
76 | TraesCS1B01G219500 | chr4D | 89.583 | 96 | 10 | 0 | 8802 | 8897 | 64347351 | 64347446 | 1.300000e-23 | 122.0 |
77 | TraesCS1B01G219500 | chrUn | 91.667 | 96 | 7 | 1 | 8802 | 8896 | 101630789 | 101630884 | 2.160000e-26 | 132.0 |
78 | TraesCS1B01G219500 | chrUn | 90.426 | 94 | 9 | 0 | 8812 | 8905 | 110290532 | 110290439 | 3.610000e-24 | 124.0 |
79 | TraesCS1B01G219500 | chrUn | 90.426 | 94 | 9 | 0 | 8812 | 8905 | 187683241 | 187683148 | 3.610000e-24 | 124.0 |
80 | TraesCS1B01G219500 | chrUn | 90.426 | 94 | 9 | 0 | 8812 | 8905 | 307658663 | 307658756 | 3.610000e-24 | 124.0 |
81 | TraesCS1B01G219500 | chrUn | 91.860 | 86 | 7 | 0 | 8812 | 8897 | 28955520 | 28955435 | 4.670000e-23 | 121.0 |
82 | TraesCS1B01G219500 | chrUn | 91.860 | 86 | 7 | 0 | 8811 | 8896 | 301350027 | 301349942 | 4.670000e-23 | 121.0 |
83 | TraesCS1B01G219500 | chrUn | 92.857 | 84 | 5 | 1 | 8811 | 8894 | 320256097 | 320256179 | 4.670000e-23 | 121.0 |
84 | TraesCS1B01G219500 | chrUn | 91.860 | 86 | 7 | 0 | 8811 | 8896 | 348118208 | 348118293 | 4.670000e-23 | 121.0 |
85 | TraesCS1B01G219500 | chrUn | 92.857 | 84 | 5 | 1 | 8811 | 8894 | 357700747 | 357700829 | 4.670000e-23 | 121.0 |
86 | TraesCS1B01G219500 | chrUn | 94.444 | 36 | 2 | 0 | 4683 | 4718 | 110998111 | 110998146 | 1.000000e-03 | 56.5 |
87 | TraesCS1B01G219500 | chrUn | 94.444 | 36 | 2 | 0 | 4683 | 4718 | 111056215 | 111056250 | 1.000000e-03 | 56.5 |
88 | TraesCS1B01G219500 | chr6D | 92.473 | 93 | 6 | 1 | 8809 | 8900 | 7985430 | 7985338 | 2.160000e-26 | 132.0 |
89 | TraesCS1B01G219500 | chr6D | 92.941 | 85 | 6 | 0 | 8812 | 8896 | 105560464 | 105560548 | 3.610000e-24 | 124.0 |
90 | TraesCS1B01G219500 | chr6D | 91.209 | 91 | 8 | 0 | 8812 | 8902 | 196357993 | 196357903 | 3.610000e-24 | 124.0 |
91 | TraesCS1B01G219500 | chr6D | 91.954 | 87 | 7 | 0 | 8810 | 8896 | 81224513 | 81224599 | 1.300000e-23 | 122.0 |
92 | TraesCS1B01G219500 | chr6D | 91.954 | 87 | 7 | 0 | 8811 | 8897 | 460470345 | 460470431 | 1.300000e-23 | 122.0 |
93 | TraesCS1B01G219500 | chr6D | 90.217 | 92 | 9 | 0 | 8812 | 8903 | 26814981 | 26814890 | 4.670000e-23 | 121.0 |
94 | TraesCS1B01G219500 | chr6D | 90.217 | 92 | 9 | 0 | 8812 | 8903 | 26895069 | 26894978 | 4.670000e-23 | 121.0 |
95 | TraesCS1B01G219500 | chr6D | 90.323 | 93 | 8 | 1 | 8805 | 8896 | 461008458 | 461008366 | 4.670000e-23 | 121.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1B01G219500 | chr1B | 396596928 | 396606441 | 9513 | True | 8331.000000 | 10436 | 100.000000 | 1 | 9514 | 2 | chr1B.!!$R6 | 9513 |
1 | TraesCS1B01G219500 | chr1B | 312926243 | 312927494 | 1251 | True | 1496.000000 | 1496 | 88.676000 | 2151 | 3370 | 1 | chr1B.!!$R1 | 1219 |
2 | TraesCS1B01G219500 | chr1B | 385167220 | 385168311 | 1091 | False | 1496.000000 | 1496 | 91.781000 | 2107 | 3174 | 1 | chr1B.!!$F3 | 1067 |
3 | TraesCS1B01G219500 | chr1B | 401785870 | 401787130 | 1260 | True | 1491.000000 | 1491 | 88.106000 | 2107 | 3371 | 1 | chr1B.!!$R3 | 1264 |
4 | TraesCS1B01G219500 | chr1B | 652523090 | 652524228 | 1138 | True | 1286.000000 | 1286 | 87.522000 | 2255 | 3366 | 1 | chr1B.!!$R5 | 1111 |
5 | TraesCS1B01G219500 | chr1B | 326772095 | 326773105 | 1010 | True | 1245.000000 | 1245 | 89.635000 | 2107 | 3074 | 1 | chr1B.!!$R2 | 967 |
6 | TraesCS1B01G219500 | chr1B | 57106899 | 57107514 | 615 | False | 806.000000 | 806 | 90.777000 | 3865 | 4462 | 1 | chr1B.!!$F1 | 597 |
7 | TraesCS1B01G219500 | chr1B | 359443898 | 359444408 | 510 | False | 728.000000 | 728 | 92.578000 | 3958 | 4462 | 1 | chr1B.!!$F2 | 504 |
8 | TraesCS1B01G219500 | chr1D | 295274695 | 295281719 | 7024 | True | 2385.500000 | 4130 | 95.262500 | 1 | 8652 | 4 | chr1D.!!$R2 | 8651 |
9 | TraesCS1B01G219500 | chr1D | 295186801 | 295187337 | 536 | True | 915.000000 | 915 | 97.393000 | 8978 | 9514 | 1 | chr1D.!!$R1 | 536 |
10 | TraesCS1B01G219500 | chr1A | 368364298 | 368369944 | 5646 | True | 972.666667 | 1932 | 94.675667 | 5539 | 9514 | 6 | chr1A.!!$R1 | 3975 |
11 | TraesCS1B01G219500 | chr1A | 368375326 | 368377053 | 1727 | True | 916.666667 | 1672 | 95.494667 | 1404 | 5543 | 3 | chr1A.!!$R2 | 4139 |
12 | TraesCS1B01G219500 | chr3B | 522241127 | 522242290 | 1163 | False | 1766.000000 | 1766 | 94.421000 | 2107 | 3245 | 1 | chr3B.!!$F3 | 1138 |
13 | TraesCS1B01G219500 | chr3B | 508752436 | 508753725 | 1289 | False | 1572.000000 | 1572 | 89.164000 | 2107 | 3359 | 1 | chr3B.!!$F2 | 1252 |
14 | TraesCS1B01G219500 | chr3B | 790745005 | 790747349 | 2344 | True | 1126.500000 | 1676 | 93.558000 | 2107 | 4465 | 2 | chr3B.!!$R2 | 2358 |
15 | TraesCS1B01G219500 | chr3B | 181301208 | 181301813 | 605 | True | 926.000000 | 926 | 94.137000 | 3864 | 4476 | 1 | chr3B.!!$R1 | 612 |
16 | TraesCS1B01G219500 | chr3A | 724740013 | 724741329 | 1316 | True | 1648.000000 | 1648 | 89.856000 | 2099 | 3370 | 1 | chr3A.!!$R1 | 1271 |
17 | TraesCS1B01G219500 | chr5B | 176600647 | 176601886 | 1239 | True | 1639.000000 | 1639 | 90.902000 | 2107 | 3319 | 1 | chr5B.!!$R1 | 1212 |
18 | TraesCS1B01G219500 | chr5B | 43868189 | 43869479 | 1290 | False | 1629.000000 | 1629 | 89.846000 | 2107 | 3371 | 1 | chr5B.!!$F1 | 1264 |
19 | TraesCS1B01G219500 | chr5B | 130923655 | 130924892 | 1237 | False | 1587.000000 | 1587 | 90.135000 | 2103 | 3326 | 1 | chr5B.!!$F2 | 1223 |
20 | TraesCS1B01G219500 | chr5B | 458731739 | 458733017 | 1278 | False | 1341.000000 | 1341 | 86.122000 | 2107 | 3359 | 1 | chr5B.!!$F3 | 1252 |
21 | TraesCS1B01G219500 | chr3D | 609940258 | 609941479 | 1221 | False | 1496.000000 | 1496 | 89.050000 | 2106 | 3320 | 1 | chr3D.!!$F5 | 1214 |
22 | TraesCS1B01G219500 | chr3D | 268942688 | 268945177 | 2489 | False | 855.000000 | 1561 | 93.578667 | 2107 | 4463 | 3 | chr3D.!!$F6 | 2356 |
23 | TraesCS1B01G219500 | chr4B | 73278881 | 73279972 | 1091 | True | 1502.000000 | 1502 | 91.872000 | 2107 | 3174 | 1 | chr4B.!!$R1 | 1067 |
24 | TraesCS1B01G219500 | chr4B | 416387367 | 416388677 | 1310 | True | 1387.000000 | 1387 | 86.521000 | 2107 | 3371 | 1 | chr4B.!!$R3 | 1264 |
25 | TraesCS1B01G219500 | chr6B | 502312717 | 502313704 | 987 | False | 1321.000000 | 1321 | 91.221000 | 2107 | 3071 | 1 | chr6B.!!$F1 | 964 |
26 | TraesCS1B01G219500 | chr2B | 407870661 | 407871291 | 630 | True | 774.000000 | 774 | 89.399000 | 3864 | 4472 | 1 | chr2B.!!$R2 | 608 |
27 | TraesCS1B01G219500 | chr2B | 302078781 | 302079284 | 503 | True | 754.000000 | 754 | 93.663000 | 3957 | 4460 | 1 | chr2B.!!$R1 | 503 |
28 | TraesCS1B01G219500 | chr7B | 285399555 | 285400058 | 503 | False | 684.000000 | 684 | 91.159000 | 3956 | 4462 | 1 | chr7B.!!$F1 | 506 |
29 | TraesCS1B01G219500 | chr7D | 267594614 | 267595150 | 536 | True | 555.000000 | 555 | 85.505000 | 3898 | 4435 | 1 | chr7D.!!$R2 | 537 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
494 | 509 | 0.106167 | ATAGCGGCTGTAGGGTCTCA | 60.106 | 55.000 | 13.86 | 0.00 | 0.00 | 3.27 | F |
725 | 745 | 0.109689 | CGACGTTCACTCTCCCACTC | 60.110 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 | F |
1921 | 1952 | 0.548682 | AACCAGCTCCTCCCTGTCAT | 60.549 | 55.000 | 0.00 | 0.00 | 0.00 | 3.06 | F |
2935 | 2998 | 0.111253 | AAGGGCAACTTGGAGGAGTG | 59.889 | 55.000 | 0.00 | 0.00 | 38.21 | 3.51 | F |
3082 | 3145 | 0.105964 | CGTGGACTGGACTTGGTGAA | 59.894 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 | F |
3084 | 3147 | 0.108585 | TGGACTGGACTTGGTGAAGC | 59.891 | 55.000 | 0.00 | 0.00 | 31.68 | 3.86 | F |
4437 | 6918 | 0.396811 | CCCTAAGACTAATGGGCCCG | 59.603 | 60.000 | 19.37 | 4.81 | 32.49 | 6.13 | F |
5551 | 8642 | 1.745115 | GTAGCTTGTGCATGCCCGA | 60.745 | 57.895 | 16.68 | 1.77 | 42.74 | 5.14 | F |
7353 | 10945 | 1.480498 | GGGTTTCCAGAAGGCTTTCCA | 60.480 | 52.381 | 4.73 | 0.00 | 33.64 | 3.53 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1630 | 1661 | 0.253327 | GAACCTCCAGTCCATCCACC | 59.747 | 60.000 | 0.00 | 0.00 | 0.00 | 4.61 | R |
2716 | 2774 | 0.030638 | GTGCGGTGCAAATCAACAGT | 59.969 | 50.000 | 0.00 | 0.00 | 41.47 | 3.55 | R |
3063 | 3126 | 0.105964 | TTCACCAAGTCCAGTCCACG | 59.894 | 55.000 | 0.00 | 0.00 | 0.00 | 4.94 | R |
4027 | 6466 | 1.201424 | GATCACCGGGGTCCTTAACT | 58.799 | 55.000 | 2.12 | 0.00 | 0.00 | 2.24 | R |
4523 | 7004 | 1.518367 | GGTTCATCACCCCCTGGATA | 58.482 | 55.000 | 0.00 | 0.00 | 40.19 | 2.59 | R |
4705 | 7785 | 2.739932 | GCAAGATCTGCCGTAGACATGT | 60.740 | 50.000 | 0.00 | 0.00 | 46.13 | 3.21 | R |
6168 | 9395 | 0.514691 | CCTGTCGCTTTGAGCTTGAC | 59.485 | 55.000 | 0.00 | 0.48 | 39.60 | 3.18 | R |
7443 | 11048 | 2.560504 | TGTCAGTTACAAGTGCCACAG | 58.439 | 47.619 | 0.00 | 0.00 | 34.29 | 3.66 | R |
8978 | 13983 | 0.179048 | TGACCGCCATGCTTAGATGG | 60.179 | 55.000 | 0.00 | 0.00 | 45.20 | 3.51 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
23 | 24 | 1.458588 | AGAGGAGGCGGGGATCTTC | 60.459 | 63.158 | 0.00 | 0.00 | 0.00 | 2.87 |
163 | 164 | 3.056607 | GCTTGATAGCTCCTCTCCTCATC | 60.057 | 52.174 | 0.00 | 0.00 | 44.27 | 2.92 |
166 | 167 | 1.540115 | TAGCTCCTCTCCTCATCCCT | 58.460 | 55.000 | 0.00 | 0.00 | 0.00 | 4.20 |
168 | 169 | 1.047801 | GCTCCTCTCCTCATCCCTTC | 58.952 | 60.000 | 0.00 | 0.00 | 0.00 | 3.46 |
171 | 172 | 1.366082 | TCCTCTCCTCATCCCTTCCAA | 59.634 | 52.381 | 0.00 | 0.00 | 0.00 | 3.53 |
193 | 194 | 3.855689 | AAAAACAATCATCAGCTCCCG | 57.144 | 42.857 | 0.00 | 0.00 | 0.00 | 5.14 |
243 | 245 | 1.599797 | CCGGCGAGGTTTCCTGTTT | 60.600 | 57.895 | 9.30 | 0.00 | 31.76 | 2.83 |
259 | 261 | 3.428999 | CCTGTTTACCTGACGTCGATGAT | 60.429 | 47.826 | 12.58 | 0.00 | 0.00 | 2.45 |
344 | 346 | 1.622173 | GCCATCAATCCTCCCCCAAAA | 60.622 | 52.381 | 0.00 | 0.00 | 0.00 | 2.44 |
365 | 367 | 4.769345 | ATCAAATCTTCCTCCCTCTGTC | 57.231 | 45.455 | 0.00 | 0.00 | 0.00 | 3.51 |
374 | 376 | 1.135333 | CCTCCCTCTGTCTACGCTTTC | 59.865 | 57.143 | 0.00 | 0.00 | 0.00 | 2.62 |
413 | 418 | 8.457238 | AGACCTAAATATTTCTGCAGAATTCC | 57.543 | 34.615 | 28.89 | 10.66 | 33.54 | 3.01 |
414 | 419 | 7.227512 | AGACCTAAATATTTCTGCAGAATTCCG | 59.772 | 37.037 | 28.89 | 15.01 | 33.54 | 4.30 |
415 | 420 | 6.145535 | CCTAAATATTTCTGCAGAATTCCGC | 58.854 | 40.000 | 28.89 | 6.71 | 33.54 | 5.54 |
416 | 421 | 5.841957 | AAATATTTCTGCAGAATTCCGCT | 57.158 | 34.783 | 28.89 | 10.29 | 33.54 | 5.52 |
417 | 422 | 5.841957 | AATATTTCTGCAGAATTCCGCTT | 57.158 | 34.783 | 28.89 | 13.84 | 33.54 | 4.68 |
418 | 423 | 5.841957 | ATATTTCTGCAGAATTCCGCTTT | 57.158 | 34.783 | 28.89 | 9.65 | 33.54 | 3.51 |
419 | 424 | 3.559238 | TTTCTGCAGAATTCCGCTTTC | 57.441 | 42.857 | 28.89 | 0.00 | 33.54 | 2.62 |
430 | 435 | 5.411053 | AGAATTCCGCTTTCTTTCTCTTCAG | 59.589 | 40.000 | 0.65 | 0.00 | 29.12 | 3.02 |
442 | 447 | 3.685139 | TCTCTTCAGGAAATTCGCACT | 57.315 | 42.857 | 0.00 | 0.00 | 0.00 | 4.40 |
452 | 467 | 7.693952 | TCAGGAAATTCGCACTTTAATGTATC | 58.306 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
480 | 495 | 8.733857 | ATGAAAAGAAAGAGAAAACAATAGCG | 57.266 | 30.769 | 0.00 | 0.00 | 0.00 | 4.26 |
494 | 509 | 0.106167 | ATAGCGGCTGTAGGGTCTCA | 60.106 | 55.000 | 13.86 | 0.00 | 0.00 | 3.27 |
507 | 522 | 7.361286 | GCTGTAGGGTCTCAAATGAAAAGTTAG | 60.361 | 40.741 | 0.00 | 0.00 | 0.00 | 2.34 |
549 | 567 | 9.347240 | CCTCATGGACTATGAAGATAAATTGTT | 57.653 | 33.333 | 2.89 | 0.00 | 44.84 | 2.83 |
582 | 600 | 9.807921 | AGAAACAAGGTCTAAAGGATGAAAATA | 57.192 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
609 | 627 | 7.898014 | ATTTTACAGGAAACTTTCAGACCTT | 57.102 | 32.000 | 3.93 | 0.00 | 40.21 | 3.50 |
622 | 640 | 9.847224 | AACTTTCAGACCTTAAGAATAAACTGA | 57.153 | 29.630 | 3.36 | 6.59 | 30.88 | 3.41 |
625 | 643 | 9.490379 | TTTCAGACCTTAAGAATAAACTGAGAC | 57.510 | 33.333 | 3.36 | 0.00 | 32.63 | 3.36 |
626 | 644 | 8.190326 | TCAGACCTTAAGAATAAACTGAGACA | 57.810 | 34.615 | 3.36 | 0.00 | 30.14 | 3.41 |
699 | 719 | 1.339097 | GACGCATACCCCTCTACCAT | 58.661 | 55.000 | 0.00 | 0.00 | 0.00 | 3.55 |
725 | 745 | 0.109689 | CGACGTTCACTCTCCCACTC | 60.110 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 |
767 | 787 | 1.667151 | CCACCAAGTGCAATGTGGG | 59.333 | 57.895 | 14.14 | 6.94 | 43.60 | 4.61 |
799 | 819 | 1.299648 | CCACGGGCCTTCTTGATCA | 59.700 | 57.895 | 0.84 | 0.00 | 0.00 | 2.92 |
802 | 822 | 1.201429 | ACGGGCCTTCTTGATCACCT | 61.201 | 55.000 | 0.84 | 0.00 | 0.00 | 4.00 |
812 | 832 | 0.834261 | TTGATCACCTGTCGACCCCA | 60.834 | 55.000 | 14.12 | 0.00 | 0.00 | 4.96 |
836 | 856 | 6.100404 | TCCAGGTAAGTATGTTACAACGTT | 57.900 | 37.500 | 0.00 | 0.00 | 0.00 | 3.99 |
838 | 858 | 5.927689 | CCAGGTAAGTATGTTACAACGTTGA | 59.072 | 40.000 | 33.66 | 15.02 | 0.00 | 3.18 |
841 | 861 | 6.643770 | AGGTAAGTATGTTACAACGTTGACAG | 59.356 | 38.462 | 33.66 | 8.62 | 0.00 | 3.51 |
912 | 932 | 3.369157 | GGCGAGGTGGTACTAAACATCTT | 60.369 | 47.826 | 0.00 | 0.00 | 0.00 | 2.40 |
921 | 941 | 1.339727 | ACTAAACATCTTGACCCCCGC | 60.340 | 52.381 | 0.00 | 0.00 | 0.00 | 6.13 |
1033 | 1053 | 2.045242 | GCCCCGAAAACCTCCTCC | 60.045 | 66.667 | 0.00 | 0.00 | 0.00 | 4.30 |
1239 | 1261 | 4.821589 | GAAGCGCCGGTGGAGGAG | 62.822 | 72.222 | 18.41 | 0.00 | 0.00 | 3.69 |
1283 | 1305 | 4.973055 | TGCGGCGGTTAGTGCGTT | 62.973 | 61.111 | 9.78 | 0.00 | 0.00 | 4.84 |
1285 | 1307 | 3.075085 | GCGGCGGTTAGTGCGTTAC | 62.075 | 63.158 | 9.78 | 0.00 | 0.00 | 2.50 |
1323 | 1354 | 2.232298 | CTTCCAGCTCGGGTGAGGAC | 62.232 | 65.000 | 4.90 | 0.00 | 42.79 | 3.85 |
1329 | 1360 | 2.758327 | TCGGGTGAGGACGATGGG | 60.758 | 66.667 | 0.00 | 0.00 | 33.69 | 4.00 |
1499 | 1530 | 1.873591 | CCTTGTGCTGTGTGGTTCTAC | 59.126 | 52.381 | 0.00 | 0.00 | 0.00 | 2.59 |
1502 | 1533 | 2.833794 | TGTGCTGTGTGGTTCTACTTC | 58.166 | 47.619 | 0.00 | 0.00 | 0.00 | 3.01 |
1503 | 1534 | 2.434336 | TGTGCTGTGTGGTTCTACTTCT | 59.566 | 45.455 | 0.00 | 0.00 | 0.00 | 2.85 |
1504 | 1535 | 3.639561 | TGTGCTGTGTGGTTCTACTTCTA | 59.360 | 43.478 | 0.00 | 0.00 | 0.00 | 2.10 |
1505 | 1536 | 4.238514 | GTGCTGTGTGGTTCTACTTCTAG | 58.761 | 47.826 | 0.00 | 0.00 | 0.00 | 2.43 |
1506 | 1537 | 3.895656 | TGCTGTGTGGTTCTACTTCTAGT | 59.104 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
1507 | 1538 | 4.344102 | TGCTGTGTGGTTCTACTTCTAGTT | 59.656 | 41.667 | 0.00 | 0.00 | 0.00 | 2.24 |
1575 | 1606 | 1.927895 | CGGATTAGCAGAGACCACAC | 58.072 | 55.000 | 0.00 | 0.00 | 0.00 | 3.82 |
1628 | 1659 | 4.824479 | TGGAGCTGATGTGATTTCAGTA | 57.176 | 40.909 | 0.00 | 0.00 | 42.12 | 2.74 |
1630 | 1661 | 5.121105 | TGGAGCTGATGTGATTTCAGTATG | 58.879 | 41.667 | 0.00 | 0.00 | 42.12 | 2.39 |
1768 | 1799 | 5.448654 | TGCTATGTGATTTTAAGCCTGGAT | 58.551 | 37.500 | 0.00 | 0.00 | 32.14 | 3.41 |
1921 | 1952 | 0.548682 | AACCAGCTCCTCCCTGTCAT | 60.549 | 55.000 | 0.00 | 0.00 | 0.00 | 3.06 |
1937 | 1968 | 4.036734 | CCTGTCATACTGTGTTTTGCTTGT | 59.963 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
1982 | 2013 | 4.537135 | TGCCGAGTTAAGATTGTCTCTT | 57.463 | 40.909 | 0.00 | 0.00 | 46.16 | 2.85 |
2059 | 2090 | 1.476488 | CCTTTGGTCTAAAATGGGCCG | 59.524 | 52.381 | 0.00 | 0.00 | 0.00 | 6.13 |
2062 | 2093 | 0.693622 | TGGTCTAAAATGGGCCGTCA | 59.306 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
2418 | 2450 | 4.198028 | ACCAACTTATAACCACGACTCC | 57.802 | 45.455 | 0.00 | 0.00 | 0.00 | 3.85 |
2716 | 2774 | 3.068691 | CTTCTCCCTGCCGGACGA | 61.069 | 66.667 | 5.05 | 0.00 | 34.86 | 4.20 |
2723 | 2781 | 2.338620 | CTGCCGGACGACTGTTGA | 59.661 | 61.111 | 5.05 | 0.00 | 0.00 | 3.18 |
2766 | 2824 | 1.078143 | AGGGCTTGCGATGGAGAAC | 60.078 | 57.895 | 0.00 | 0.00 | 0.00 | 3.01 |
2883 | 2946 | 3.106986 | ATGCCCAAGATCCCCGACG | 62.107 | 63.158 | 0.00 | 0.00 | 0.00 | 5.12 |
2934 | 2997 | 0.402121 | GAAGGGCAACTTGGAGGAGT | 59.598 | 55.000 | 0.00 | 0.00 | 40.21 | 3.85 |
2935 | 2998 | 0.111253 | AAGGGCAACTTGGAGGAGTG | 59.889 | 55.000 | 0.00 | 0.00 | 38.21 | 3.51 |
2936 | 2999 | 1.303643 | GGGCAACTTGGAGGAGTGG | 60.304 | 63.158 | 0.00 | 0.00 | 0.00 | 4.00 |
2937 | 3000 | 1.973812 | GGCAACTTGGAGGAGTGGC | 60.974 | 63.158 | 0.00 | 0.00 | 44.29 | 5.01 |
2938 | 3001 | 1.228245 | GCAACTTGGAGGAGTGGCA | 60.228 | 57.895 | 0.00 | 0.00 | 44.39 | 4.92 |
2939 | 3002 | 0.610232 | GCAACTTGGAGGAGTGGCAT | 60.610 | 55.000 | 0.00 | 0.00 | 44.39 | 4.40 |
2940 | 3003 | 1.457346 | CAACTTGGAGGAGTGGCATC | 58.543 | 55.000 | 0.00 | 0.00 | 0.00 | 3.91 |
2941 | 3004 | 1.004044 | CAACTTGGAGGAGTGGCATCT | 59.996 | 52.381 | 0.00 | 0.00 | 0.00 | 2.90 |
2942 | 3005 | 0.617413 | ACTTGGAGGAGTGGCATCTG | 59.383 | 55.000 | 0.00 | 0.00 | 0.00 | 2.90 |
2943 | 3006 | 0.747283 | CTTGGAGGAGTGGCATCTGC | 60.747 | 60.000 | 0.00 | 0.00 | 41.14 | 4.26 |
2944 | 3007 | 1.491274 | TTGGAGGAGTGGCATCTGCA | 61.491 | 55.000 | 4.33 | 8.03 | 44.36 | 4.41 |
2945 | 3008 | 1.153208 | GGAGGAGTGGCATCTGCAG | 60.153 | 63.158 | 7.63 | 7.63 | 44.36 | 4.41 |
2946 | 3009 | 1.620739 | GGAGGAGTGGCATCTGCAGA | 61.621 | 60.000 | 20.79 | 20.79 | 44.36 | 4.26 |
2947 | 3010 | 0.461693 | GAGGAGTGGCATCTGCAGAC | 60.462 | 60.000 | 20.97 | 7.23 | 44.36 | 3.51 |
2948 | 3011 | 1.451028 | GGAGTGGCATCTGCAGACC | 60.451 | 63.158 | 20.97 | 17.44 | 44.36 | 3.85 |
2949 | 3012 | 1.297689 | GAGTGGCATCTGCAGACCA | 59.702 | 57.895 | 20.97 | 20.05 | 44.36 | 4.02 |
2950 | 3013 | 3.583383 | GTGGCATCTGCAGACCAC | 58.417 | 61.111 | 30.10 | 30.10 | 45.22 | 4.16 |
2951 | 3014 | 2.046988 | TGGCATCTGCAGACCACG | 60.047 | 61.111 | 20.97 | 9.19 | 44.36 | 4.94 |
2952 | 3015 | 3.503363 | GGCATCTGCAGACCACGC | 61.503 | 66.667 | 20.97 | 18.36 | 44.36 | 5.34 |
2953 | 3016 | 2.743538 | GCATCTGCAGACCACGCA | 60.744 | 61.111 | 20.97 | 0.00 | 41.59 | 5.24 |
2954 | 3017 | 2.110967 | GCATCTGCAGACCACGCAT | 61.111 | 57.895 | 20.97 | 0.00 | 39.02 | 4.73 |
2955 | 3018 | 2.012237 | CATCTGCAGACCACGCATC | 58.988 | 57.895 | 20.97 | 0.00 | 39.02 | 3.91 |
2956 | 3019 | 0.461516 | CATCTGCAGACCACGCATCT | 60.462 | 55.000 | 20.97 | 0.00 | 39.02 | 2.90 |
2957 | 3020 | 0.179089 | ATCTGCAGACCACGCATCTC | 60.179 | 55.000 | 20.97 | 0.00 | 39.02 | 2.75 |
2958 | 3021 | 1.812922 | CTGCAGACCACGCATCTCC | 60.813 | 63.158 | 8.42 | 0.00 | 39.02 | 3.71 |
2959 | 3022 | 2.512515 | GCAGACCACGCATCTCCC | 60.513 | 66.667 | 0.00 | 0.00 | 0.00 | 4.30 |
2960 | 3023 | 2.202797 | CAGACCACGCATCTCCCG | 60.203 | 66.667 | 0.00 | 0.00 | 0.00 | 5.14 |
2961 | 3024 | 4.148825 | AGACCACGCATCTCCCGC | 62.149 | 66.667 | 0.00 | 0.00 | 0.00 | 6.13 |
2962 | 3025 | 4.451150 | GACCACGCATCTCCCGCA | 62.451 | 66.667 | 0.00 | 0.00 | 0.00 | 5.69 |
2963 | 3026 | 4.760047 | ACCACGCATCTCCCGCAC | 62.760 | 66.667 | 0.00 | 0.00 | 0.00 | 5.34 |
2964 | 3027 | 4.758251 | CCACGCATCTCCCGCACA | 62.758 | 66.667 | 0.00 | 0.00 | 0.00 | 4.57 |
2965 | 3028 | 2.512286 | CACGCATCTCCCGCACAT | 60.512 | 61.111 | 0.00 | 0.00 | 0.00 | 3.21 |
2966 | 3029 | 2.512286 | ACGCATCTCCCGCACATG | 60.512 | 61.111 | 0.00 | 0.00 | 0.00 | 3.21 |
2967 | 3030 | 3.945434 | CGCATCTCCCGCACATGC | 61.945 | 66.667 | 0.00 | 0.00 | 39.70 | 4.06 |
2968 | 3031 | 3.589881 | GCATCTCCCGCACATGCC | 61.590 | 66.667 | 0.00 | 0.00 | 37.54 | 4.40 |
2969 | 3032 | 3.274586 | CATCTCCCGCACATGCCG | 61.275 | 66.667 | 0.00 | 0.00 | 37.91 | 5.69 |
2970 | 3033 | 3.469970 | ATCTCCCGCACATGCCGA | 61.470 | 61.111 | 7.82 | 0.00 | 37.91 | 5.54 |
2971 | 3034 | 3.740128 | ATCTCCCGCACATGCCGAC | 62.740 | 63.158 | 7.82 | 0.00 | 37.91 | 4.79 |
2972 | 3035 | 4.758251 | CTCCCGCACATGCCGACA | 62.758 | 66.667 | 7.82 | 0.00 | 37.91 | 4.35 |
2975 | 3038 | 4.088762 | CCGCACATGCCGACACAC | 62.089 | 66.667 | 7.82 | 0.00 | 37.91 | 3.82 |
2976 | 3039 | 3.043713 | CGCACATGCCGACACACT | 61.044 | 61.111 | 0.00 | 0.00 | 37.91 | 3.55 |
2977 | 3040 | 1.736282 | CGCACATGCCGACACACTA | 60.736 | 57.895 | 0.00 | 0.00 | 37.91 | 2.74 |
2978 | 3041 | 1.686566 | CGCACATGCCGACACACTAG | 61.687 | 60.000 | 0.00 | 0.00 | 37.91 | 2.57 |
2979 | 3042 | 1.361668 | GCACATGCCGACACACTAGG | 61.362 | 60.000 | 0.00 | 0.00 | 34.31 | 3.02 |
2980 | 3043 | 0.246360 | CACATGCCGACACACTAGGA | 59.754 | 55.000 | 0.00 | 0.00 | 0.00 | 2.94 |
2981 | 3044 | 0.532573 | ACATGCCGACACACTAGGAG | 59.467 | 55.000 | 0.00 | 0.00 | 0.00 | 3.69 |
2982 | 3045 | 0.179100 | CATGCCGACACACTAGGAGG | 60.179 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2983 | 3046 | 1.961180 | ATGCCGACACACTAGGAGGC | 61.961 | 60.000 | 0.00 | 0.00 | 44.38 | 4.70 |
2984 | 3047 | 2.893398 | CCGACACACTAGGAGGCC | 59.107 | 66.667 | 0.00 | 0.00 | 0.00 | 5.19 |
2985 | 3048 | 2.490217 | CGACACACTAGGAGGCCG | 59.510 | 66.667 | 0.00 | 0.00 | 0.00 | 6.13 |
2986 | 3049 | 2.184579 | GACACACTAGGAGGCCGC | 59.815 | 66.667 | 0.00 | 0.00 | 0.00 | 6.53 |
2987 | 3050 | 3.701604 | GACACACTAGGAGGCCGCG | 62.702 | 68.421 | 0.00 | 0.00 | 0.00 | 6.46 |
3010 | 3073 | 2.281970 | CAGCCTGCAGCCTCACAA | 60.282 | 61.111 | 8.66 | 0.00 | 45.47 | 3.33 |
3011 | 3074 | 2.282040 | AGCCTGCAGCCTCACAAC | 60.282 | 61.111 | 8.66 | 0.00 | 45.47 | 3.32 |
3012 | 3075 | 3.368571 | GCCTGCAGCCTCACAACC | 61.369 | 66.667 | 8.66 | 0.00 | 34.35 | 3.77 |
3013 | 3076 | 3.052082 | CCTGCAGCCTCACAACCG | 61.052 | 66.667 | 8.66 | 0.00 | 0.00 | 4.44 |
3014 | 3077 | 3.730761 | CTGCAGCCTCACAACCGC | 61.731 | 66.667 | 0.00 | 0.00 | 0.00 | 5.68 |
3017 | 3080 | 4.680237 | CAGCCTCACAACCGCCGA | 62.680 | 66.667 | 0.00 | 0.00 | 0.00 | 5.54 |
3018 | 3081 | 4.681978 | AGCCTCACAACCGCCGAC | 62.682 | 66.667 | 0.00 | 0.00 | 0.00 | 4.79 |
3019 | 3082 | 4.980805 | GCCTCACAACCGCCGACA | 62.981 | 66.667 | 0.00 | 0.00 | 0.00 | 4.35 |
3020 | 3083 | 3.041940 | CCTCACAACCGCCGACAC | 61.042 | 66.667 | 0.00 | 0.00 | 0.00 | 3.67 |
3021 | 3084 | 3.403057 | CTCACAACCGCCGACACG | 61.403 | 66.667 | 0.00 | 0.00 | 0.00 | 4.49 |
3022 | 3085 | 4.210093 | TCACAACCGCCGACACGT | 62.210 | 61.111 | 0.00 | 0.00 | 0.00 | 4.49 |
3023 | 3086 | 3.995669 | CACAACCGCCGACACGTG | 61.996 | 66.667 | 15.48 | 15.48 | 0.00 | 4.49 |
3041 | 3104 | 2.280186 | GCGGGTAGCGATCCAAGG | 60.280 | 66.667 | 0.00 | 0.00 | 35.41 | 3.61 |
3042 | 3105 | 2.280186 | CGGGTAGCGATCCAAGGC | 60.280 | 66.667 | 0.00 | 0.00 | 0.00 | 4.35 |
3043 | 3106 | 2.280186 | GGGTAGCGATCCAAGGCG | 60.280 | 66.667 | 0.00 | 0.00 | 0.00 | 5.52 |
3044 | 3107 | 2.280186 | GGTAGCGATCCAAGGCGG | 60.280 | 66.667 | 0.00 | 0.00 | 0.00 | 6.13 |
3059 | 3122 | 2.254350 | CGGAAGCAGTGACGACGA | 59.746 | 61.111 | 0.00 | 0.00 | 0.00 | 4.20 |
3060 | 3123 | 1.797933 | CGGAAGCAGTGACGACGAG | 60.798 | 63.158 | 0.00 | 0.00 | 0.00 | 4.18 |
3061 | 3124 | 1.444553 | GGAAGCAGTGACGACGAGG | 60.445 | 63.158 | 0.00 | 0.00 | 0.00 | 4.63 |
3062 | 3125 | 1.444553 | GAAGCAGTGACGACGAGGG | 60.445 | 63.158 | 0.00 | 0.00 | 0.00 | 4.30 |
3063 | 3126 | 3.575351 | AAGCAGTGACGACGAGGGC | 62.575 | 63.158 | 0.00 | 0.00 | 0.00 | 5.19 |
3074 | 3137 | 4.436998 | CGAGGGCGTGGACTGGAC | 62.437 | 72.222 | 0.00 | 0.00 | 0.00 | 4.02 |
3075 | 3138 | 2.997897 | GAGGGCGTGGACTGGACT | 60.998 | 66.667 | 0.00 | 0.00 | 0.00 | 3.85 |
3076 | 3139 | 2.526873 | AGGGCGTGGACTGGACTT | 60.527 | 61.111 | 0.00 | 0.00 | 0.00 | 3.01 |
3077 | 3140 | 2.358737 | GGGCGTGGACTGGACTTG | 60.359 | 66.667 | 0.00 | 0.00 | 0.00 | 3.16 |
3078 | 3141 | 2.358737 | GGCGTGGACTGGACTTGG | 60.359 | 66.667 | 0.00 | 0.00 | 0.00 | 3.61 |
3079 | 3142 | 2.426023 | GCGTGGACTGGACTTGGT | 59.574 | 61.111 | 0.00 | 0.00 | 0.00 | 3.67 |
3080 | 3143 | 1.961277 | GCGTGGACTGGACTTGGTG | 60.961 | 63.158 | 0.00 | 0.00 | 0.00 | 4.17 |
3081 | 3144 | 1.745890 | CGTGGACTGGACTTGGTGA | 59.254 | 57.895 | 0.00 | 0.00 | 0.00 | 4.02 |
3082 | 3145 | 0.105964 | CGTGGACTGGACTTGGTGAA | 59.894 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
3083 | 3146 | 1.873903 | CGTGGACTGGACTTGGTGAAG | 60.874 | 57.143 | 0.00 | 0.00 | 35.07 | 3.02 |
3084 | 3147 | 0.108585 | TGGACTGGACTTGGTGAAGC | 59.891 | 55.000 | 0.00 | 0.00 | 31.68 | 3.86 |
3085 | 3148 | 0.951040 | GGACTGGACTTGGTGAAGCG | 60.951 | 60.000 | 0.00 | 0.00 | 31.68 | 4.68 |
3086 | 3149 | 0.951040 | GACTGGACTTGGTGAAGCGG | 60.951 | 60.000 | 0.00 | 0.00 | 31.68 | 5.52 |
3087 | 3150 | 1.672356 | CTGGACTTGGTGAAGCGGG | 60.672 | 63.158 | 0.00 | 0.00 | 31.68 | 6.13 |
3088 | 3151 | 2.111999 | CTGGACTTGGTGAAGCGGGA | 62.112 | 60.000 | 0.00 | 0.00 | 31.68 | 5.14 |
3089 | 3152 | 1.671379 | GGACTTGGTGAAGCGGGAC | 60.671 | 63.158 | 0.00 | 0.00 | 31.68 | 4.46 |
3090 | 3153 | 1.371558 | GACTTGGTGAAGCGGGACT | 59.628 | 57.895 | 0.00 | 0.00 | 31.68 | 3.85 |
3091 | 3154 | 0.670854 | GACTTGGTGAAGCGGGACTC | 60.671 | 60.000 | 0.00 | 0.00 | 31.68 | 3.36 |
3092 | 3155 | 1.376037 | CTTGGTGAAGCGGGACTCC | 60.376 | 63.158 | 0.00 | 0.00 | 0.00 | 3.85 |
3093 | 3156 | 1.831652 | CTTGGTGAAGCGGGACTCCT | 61.832 | 60.000 | 0.00 | 0.00 | 0.00 | 3.69 |
3094 | 3157 | 2.111999 | TTGGTGAAGCGGGACTCCTG | 62.112 | 60.000 | 0.00 | 0.00 | 0.00 | 3.86 |
3120 | 3183 | 4.899239 | GTCGATGCGGGGCCAGAG | 62.899 | 72.222 | 8.22 | 0.00 | 0.00 | 3.35 |
3240 | 3303 | 4.856801 | GCGGTGGTGGCGATGGAT | 62.857 | 66.667 | 0.00 | 0.00 | 0.00 | 3.41 |
3241 | 3304 | 2.896854 | CGGTGGTGGCGATGGATG | 60.897 | 66.667 | 0.00 | 0.00 | 0.00 | 3.51 |
3242 | 3305 | 2.516930 | GGTGGTGGCGATGGATGG | 60.517 | 66.667 | 0.00 | 0.00 | 0.00 | 3.51 |
3243 | 3306 | 3.211963 | GTGGTGGCGATGGATGGC | 61.212 | 66.667 | 0.00 | 0.00 | 0.00 | 4.40 |
3244 | 3307 | 3.726144 | TGGTGGCGATGGATGGCA | 61.726 | 61.111 | 0.00 | 0.00 | 39.86 | 4.92 |
3245 | 3308 | 2.440065 | GGTGGCGATGGATGGCAA | 60.440 | 61.111 | 0.00 | 0.00 | 44.01 | 4.52 |
3246 | 3309 | 2.774799 | GGTGGCGATGGATGGCAAC | 61.775 | 63.158 | 0.00 | 0.00 | 44.01 | 4.17 |
3247 | 3310 | 1.750399 | GTGGCGATGGATGGCAACT | 60.750 | 57.895 | 0.00 | 0.00 | 44.01 | 3.16 |
3248 | 3311 | 1.750018 | TGGCGATGGATGGCAACTG | 60.750 | 57.895 | 0.00 | 0.00 | 39.13 | 3.16 |
3249 | 3312 | 2.410469 | GCGATGGATGGCAACTGC | 59.590 | 61.111 | 0.00 | 0.00 | 41.14 | 4.40 |
3250 | 3313 | 2.409055 | GCGATGGATGGCAACTGCA | 61.409 | 57.895 | 3.76 | 0.00 | 44.36 | 4.41 |
3251 | 3314 | 1.725665 | CGATGGATGGCAACTGCAG | 59.274 | 57.895 | 13.48 | 13.48 | 44.36 | 4.41 |
3252 | 3315 | 1.436336 | GATGGATGGCAACTGCAGC | 59.564 | 57.895 | 15.27 | 0.00 | 44.36 | 5.25 |
3253 | 3316 | 2.332362 | GATGGATGGCAACTGCAGCG | 62.332 | 60.000 | 15.27 | 6.49 | 44.36 | 5.18 |
3254 | 3317 | 2.747460 | GGATGGCAACTGCAGCGA | 60.747 | 61.111 | 15.27 | 0.00 | 44.36 | 4.93 |
3255 | 3318 | 2.482374 | GATGGCAACTGCAGCGAC | 59.518 | 61.111 | 15.27 | 8.31 | 44.36 | 5.19 |
3256 | 3319 | 3.372676 | GATGGCAACTGCAGCGACG | 62.373 | 63.158 | 15.27 | 0.28 | 44.36 | 5.12 |
3998 | 6437 | 3.330720 | GGGCTGGCCAGGTACAGT | 61.331 | 66.667 | 33.46 | 0.00 | 37.07 | 3.55 |
4027 | 6466 | 2.338015 | GGACGGCTGTGACGAGGTA | 61.338 | 63.158 | 0.80 | 0.00 | 35.20 | 3.08 |
4031 | 6470 | 0.806868 | CGGCTGTGACGAGGTAGTTA | 59.193 | 55.000 | 0.00 | 0.00 | 35.20 | 2.24 |
4052 | 6491 | 1.075896 | GACCCCGGTGATCTCCTCT | 60.076 | 63.158 | 11.86 | 0.00 | 0.00 | 3.69 |
4437 | 6918 | 0.396811 | CCCTAAGACTAATGGGCCCG | 59.603 | 60.000 | 19.37 | 4.81 | 32.49 | 6.13 |
4465 | 6946 | 5.010415 | GGCCCATTACGTACTCTAACACTAT | 59.990 | 44.000 | 0.00 | 0.00 | 0.00 | 2.12 |
4466 | 6947 | 5.919141 | GCCCATTACGTACTCTAACACTATG | 59.081 | 44.000 | 0.00 | 0.00 | 0.00 | 2.23 |
4556 | 7636 | 7.605410 | GGTGATGAACCTCGTTTATTCTTTA | 57.395 | 36.000 | 0.00 | 0.00 | 46.55 | 1.85 |
4615 | 7695 | 5.006746 | GGCATAGACCTATGTTTTGAACTCG | 59.993 | 44.000 | 15.90 | 0.00 | 43.57 | 4.18 |
4648 | 7728 | 4.352893 | CCCCCAAAATAACTCATCTTGGT | 58.647 | 43.478 | 0.00 | 0.00 | 35.73 | 3.67 |
4705 | 7785 | 3.500448 | TGTAGTTGCATTCCTTGTGGA | 57.500 | 42.857 | 0.00 | 0.00 | 41.36 | 4.02 |
4714 | 7794 | 3.375299 | GCATTCCTTGTGGACATGTCTAC | 59.625 | 47.826 | 29.57 | 29.57 | 43.06 | 2.59 |
4774 | 7854 | 2.561478 | AGAAAAGTGCCACGGTATGT | 57.439 | 45.000 | 0.00 | 0.00 | 0.00 | 2.29 |
5111 | 8201 | 5.003804 | GCTACTTCCTTTTCAGAATCCACA | 58.996 | 41.667 | 0.00 | 0.00 | 0.00 | 4.17 |
5161 | 8252 | 8.970859 | AGGATTTATATGAACACTCTTTCCTG | 57.029 | 34.615 | 0.00 | 0.00 | 0.00 | 3.86 |
5438 | 8529 | 6.314917 | ACAAAAAGGGTAACTCAGATGGAAT | 58.685 | 36.000 | 0.00 | 0.00 | 0.00 | 3.01 |
5502 | 8593 | 2.270986 | CCCTGCCTGGTTCAGCAAC | 61.271 | 63.158 | 0.00 | 0.00 | 0.00 | 4.17 |
5526 | 8617 | 7.454225 | ACTGCCTGATTACTCTCTTTTTAGTT | 58.546 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
5550 | 8641 | 1.985447 | CTGTAGCTTGTGCATGCCCG | 61.985 | 60.000 | 16.68 | 1.62 | 42.74 | 6.13 |
5551 | 8642 | 1.745115 | GTAGCTTGTGCATGCCCGA | 60.745 | 57.895 | 16.68 | 1.77 | 42.74 | 5.14 |
5590 | 8681 | 8.045507 | ACTTCTGCTATTGAATTCATCTCTTCA | 58.954 | 33.333 | 9.40 | 2.75 | 0.00 | 3.02 |
5678 | 8769 | 7.775053 | ATATGTTAATGTTCTGTTGTTGGGT | 57.225 | 32.000 | 0.00 | 0.00 | 0.00 | 4.51 |
6060 | 9287 | 4.617298 | GCTAGTTTCTGACTGACCTCTCAC | 60.617 | 50.000 | 0.00 | 0.00 | 39.48 | 3.51 |
6061 | 9288 | 3.300388 | AGTTTCTGACTGACCTCTCACA | 58.700 | 45.455 | 0.00 | 0.00 | 37.17 | 3.58 |
6095 | 9322 | 7.817418 | ATAAACCTTTTTGTTCAGTAGAGCA | 57.183 | 32.000 | 0.00 | 0.00 | 32.81 | 4.26 |
6168 | 9395 | 8.352752 | TGTATCAGCAACGTCTAATAAATGAG | 57.647 | 34.615 | 0.00 | 0.00 | 0.00 | 2.90 |
6250 | 9477 | 8.814038 | ACAATAGAGGATGCTAATGTTCTTTT | 57.186 | 30.769 | 0.00 | 0.00 | 32.11 | 2.27 |
6287 | 9514 | 4.701651 | AGAAAATGGCAGAACAATCATCGA | 59.298 | 37.500 | 0.00 | 0.00 | 0.00 | 3.59 |
6370 | 9597 | 3.569194 | TGCAAGTTTGTTCTCCAGGTA | 57.431 | 42.857 | 0.00 | 0.00 | 0.00 | 3.08 |
6398 | 9625 | 4.836125 | ATTTCGAGTGTTGCTTGATTGT | 57.164 | 36.364 | 0.00 | 0.00 | 37.45 | 2.71 |
6516 | 9749 | 6.686484 | TCTATCATGTACATGCCTTGGTAT | 57.314 | 37.500 | 27.71 | 17.24 | 38.65 | 2.73 |
6589 | 9822 | 7.209475 | TGATCCAATTTGTTTTTCTGTTCCTC | 58.791 | 34.615 | 0.00 | 0.00 | 0.00 | 3.71 |
6657 | 9890 | 5.519722 | CACCATGTTCTGAAGTTGTTTACC | 58.480 | 41.667 | 0.00 | 0.00 | 0.00 | 2.85 |
6849 | 10404 | 4.717233 | TGCTTCTTGACACACATTTTGT | 57.283 | 36.364 | 0.00 | 0.00 | 39.97 | 2.83 |
6924 | 10479 | 4.040339 | TGCATGTTCTCTAGACAGGAAACA | 59.960 | 41.667 | 0.00 | 1.89 | 33.81 | 2.83 |
7242 | 10798 | 3.161866 | GACTAAACCAATGCTCCCCAAA | 58.838 | 45.455 | 0.00 | 0.00 | 0.00 | 3.28 |
7353 | 10945 | 1.480498 | GGGTTTCCAGAAGGCTTTCCA | 60.480 | 52.381 | 4.73 | 0.00 | 33.64 | 3.53 |
7356 | 10948 | 3.056536 | GGTTTCCAGAAGGCTTTCCATTC | 60.057 | 47.826 | 4.73 | 0.00 | 33.64 | 2.67 |
7430 | 11035 | 7.919091 | AGCAGCATACATGTTTCAAAATATCAG | 59.081 | 33.333 | 2.30 | 0.00 | 0.00 | 2.90 |
7448 | 11053 | 8.915057 | AATATCAGAAGATTTACATCCTGTGG | 57.085 | 34.615 | 0.00 | 0.00 | 35.67 | 4.17 |
7472 | 11077 | 5.149273 | CACTTGTAACTGACAATGATGCAC | 58.851 | 41.667 | 0.00 | 0.00 | 46.95 | 4.57 |
7480 | 11085 | 5.466819 | ACTGACAATGATGCACAGAAATTG | 58.533 | 37.500 | 5.35 | 6.26 | 37.55 | 2.32 |
7637 | 11242 | 0.325577 | GGGATCAAACTGGCCCCAAT | 60.326 | 55.000 | 0.00 | 0.00 | 37.04 | 3.16 |
7700 | 11305 | 8.567285 | TCTTATGATTCCTTCTGAACCTTTTC | 57.433 | 34.615 | 0.00 | 0.00 | 35.31 | 2.29 |
7917 | 11522 | 2.295349 | GCATTTGGGATGTAGATGGCAG | 59.705 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
7940 | 11547 | 4.095036 | GTGAAAATAGGTACTTGCCAGCTC | 59.905 | 45.833 | 0.00 | 0.00 | 41.75 | 4.09 |
7986 | 11593 | 3.895998 | TGCCTATGGTATGTGCAAATGA | 58.104 | 40.909 | 0.00 | 0.00 | 0.00 | 2.57 |
8178 | 11785 | 1.546029 | CACAATCACCGACTCTCTCCA | 59.454 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
8186 | 11793 | 0.814457 | CGACTCTCTCCAGTTCTGGG | 59.186 | 60.000 | 17.37 | 9.33 | 0.00 | 4.45 |
8295 | 11902 | 1.471676 | GGATGTCGAAGTCCGCAATCT | 60.472 | 52.381 | 1.95 | 0.00 | 38.37 | 2.40 |
8333 | 11940 | 0.605589 | ACCAACGCCTCTTTGCCTAC | 60.606 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
8388 | 11995 | 3.314388 | CTGCCTTCGTTTCAGCCGC | 62.314 | 63.158 | 0.00 | 0.00 | 0.00 | 6.53 |
8465 | 12072 | 1.328430 | CCACCGGGGAGAAGTACCTC | 61.328 | 65.000 | 4.41 | 0.00 | 40.01 | 3.85 |
8574 | 12184 | 5.128468 | CGTTGTAACGCTTCACTAGTTTTC | 58.872 | 41.667 | 4.08 | 0.00 | 46.06 | 2.29 |
8619 | 12229 | 7.771826 | GTCTTCCTCTGTACAGTATTCTCTAGT | 59.228 | 40.741 | 21.99 | 0.00 | 0.00 | 2.57 |
8620 | 12230 | 8.990203 | TCTTCCTCTGTACAGTATTCTCTAGTA | 58.010 | 37.037 | 21.99 | 0.00 | 0.00 | 1.82 |
8621 | 12231 | 9.268268 | CTTCCTCTGTACAGTATTCTCTAGTAG | 57.732 | 40.741 | 21.99 | 7.66 | 0.00 | 2.57 |
8623 | 12233 | 8.423349 | TCCTCTGTACAGTATTCTCTAGTAGAC | 58.577 | 40.741 | 21.99 | 0.00 | 32.51 | 2.59 |
8624 | 12234 | 8.426489 | CCTCTGTACAGTATTCTCTAGTAGACT | 58.574 | 40.741 | 21.99 | 0.00 | 32.51 | 3.24 |
8625 | 12235 | 9.256477 | CTCTGTACAGTATTCTCTAGTAGACTG | 57.744 | 40.741 | 21.99 | 12.22 | 33.89 | 3.51 |
8637 | 12247 | 7.793036 | TCTCTAGTAGACTGCACATCTTAGTA | 58.207 | 38.462 | 0.00 | 0.00 | 0.00 | 1.82 |
8650 | 12260 | 6.347402 | GCACATCTTAGTACACAAATCAACGT | 60.347 | 38.462 | 0.00 | 0.00 | 0.00 | 3.99 |
8651 | 12261 | 7.148705 | GCACATCTTAGTACACAAATCAACGTA | 60.149 | 37.037 | 0.00 | 0.00 | 0.00 | 3.57 |
8652 | 12262 | 8.160342 | CACATCTTAGTACACAAATCAACGTAC | 58.840 | 37.037 | 0.00 | 0.00 | 35.53 | 3.67 |
8653 | 12263 | 8.086522 | ACATCTTAGTACACAAATCAACGTACT | 58.913 | 33.333 | 0.00 | 0.00 | 44.93 | 2.73 |
8654 | 12264 | 8.584600 | CATCTTAGTACACAAATCAACGTACTC | 58.415 | 37.037 | 4.46 | 0.00 | 42.61 | 2.59 |
8655 | 12265 | 7.086376 | TCTTAGTACACAAATCAACGTACTCC | 58.914 | 38.462 | 4.46 | 0.00 | 42.61 | 3.85 |
8656 | 12266 | 5.464030 | AGTACACAAATCAACGTACTCCT | 57.536 | 39.130 | 0.00 | 0.00 | 40.29 | 3.69 |
8657 | 12267 | 5.467705 | AGTACACAAATCAACGTACTCCTC | 58.532 | 41.667 | 0.00 | 0.00 | 40.29 | 3.71 |
8658 | 12268 | 4.330944 | ACACAAATCAACGTACTCCTCA | 57.669 | 40.909 | 0.00 | 0.00 | 0.00 | 3.86 |
8659 | 12269 | 4.307432 | ACACAAATCAACGTACTCCTCAG | 58.693 | 43.478 | 0.00 | 0.00 | 0.00 | 3.35 |
8660 | 12270 | 3.123621 | CACAAATCAACGTACTCCTCAGC | 59.876 | 47.826 | 0.00 | 0.00 | 0.00 | 4.26 |
8661 | 12271 | 3.244078 | ACAAATCAACGTACTCCTCAGCA | 60.244 | 43.478 | 0.00 | 0.00 | 0.00 | 4.41 |
8662 | 12272 | 2.949451 | ATCAACGTACTCCTCAGCAG | 57.051 | 50.000 | 0.00 | 0.00 | 0.00 | 4.24 |
8663 | 12273 | 1.905637 | TCAACGTACTCCTCAGCAGA | 58.094 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
8664 | 12274 | 1.540267 | TCAACGTACTCCTCAGCAGAC | 59.460 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
8665 | 12275 | 1.269723 | CAACGTACTCCTCAGCAGACA | 59.730 | 52.381 | 0.00 | 0.00 | 0.00 | 3.41 |
8666 | 12276 | 1.840737 | ACGTACTCCTCAGCAGACAT | 58.159 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
8667 | 12277 | 1.474478 | ACGTACTCCTCAGCAGACATG | 59.526 | 52.381 | 0.00 | 0.00 | 0.00 | 3.21 |
8668 | 12278 | 1.474478 | CGTACTCCTCAGCAGACATGT | 59.526 | 52.381 | 0.00 | 0.00 | 0.00 | 3.21 |
8669 | 12279 | 2.683362 | CGTACTCCTCAGCAGACATGTA | 59.317 | 50.000 | 0.00 | 0.00 | 0.00 | 2.29 |
8670 | 12280 | 3.316588 | CGTACTCCTCAGCAGACATGTAT | 59.683 | 47.826 | 0.00 | 0.00 | 0.00 | 2.29 |
8671 | 12281 | 3.815856 | ACTCCTCAGCAGACATGTATG | 57.184 | 47.619 | 16.15 | 16.15 | 0.00 | 2.39 |
8672 | 12282 | 3.369175 | ACTCCTCAGCAGACATGTATGA | 58.631 | 45.455 | 24.15 | 12.45 | 0.00 | 2.15 |
8673 | 12283 | 3.966006 | ACTCCTCAGCAGACATGTATGAT | 59.034 | 43.478 | 24.15 | 15.56 | 0.00 | 2.45 |
8674 | 12284 | 4.408270 | ACTCCTCAGCAGACATGTATGATT | 59.592 | 41.667 | 24.15 | 8.28 | 0.00 | 2.57 |
8675 | 12285 | 5.104610 | ACTCCTCAGCAGACATGTATGATTT | 60.105 | 40.000 | 24.15 | 5.76 | 0.00 | 2.17 |
8676 | 12286 | 5.121105 | TCCTCAGCAGACATGTATGATTTG | 58.879 | 41.667 | 24.15 | 16.74 | 0.00 | 2.32 |
8677 | 12287 | 4.261072 | CCTCAGCAGACATGTATGATTTGC | 60.261 | 45.833 | 24.15 | 14.00 | 34.62 | 3.68 |
8678 | 12288 | 4.520179 | TCAGCAGACATGTATGATTTGCT | 58.480 | 39.130 | 24.15 | 15.79 | 40.17 | 3.91 |
8679 | 12289 | 5.673514 | TCAGCAGACATGTATGATTTGCTA | 58.326 | 37.500 | 24.15 | 1.86 | 38.81 | 3.49 |
8680 | 12290 | 6.293698 | TCAGCAGACATGTATGATTTGCTAT | 58.706 | 36.000 | 24.15 | 0.00 | 38.81 | 2.97 |
8681 | 12291 | 6.204108 | TCAGCAGACATGTATGATTTGCTATG | 59.796 | 38.462 | 24.15 | 4.24 | 38.81 | 2.23 |
8682 | 12292 | 6.204108 | CAGCAGACATGTATGATTTGCTATGA | 59.796 | 38.462 | 24.15 | 0.00 | 38.81 | 2.15 |
8683 | 12293 | 6.940867 | AGCAGACATGTATGATTTGCTATGAT | 59.059 | 34.615 | 24.15 | 0.00 | 38.94 | 2.45 |
8724 | 12334 | 8.284945 | ACATTGACATGTATGATTTGCTAGTT | 57.715 | 30.769 | 14.22 | 0.00 | 42.24 | 2.24 |
8769 | 12379 | 1.610522 | GGGATGATGCCTTGTATGCAC | 59.389 | 52.381 | 0.00 | 0.00 | 42.38 | 4.57 |
8793 | 12403 | 6.205853 | ACATTACGCTGACATTTTTCCAACTA | 59.794 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
8819 | 12429 | 9.566432 | ACTTTTCATCATAATCAATACTCCCTC | 57.434 | 33.333 | 0.00 | 0.00 | 0.00 | 4.30 |
8821 | 12431 | 6.286240 | TCATCATAATCAATACTCCCTCCG | 57.714 | 41.667 | 0.00 | 0.00 | 0.00 | 4.63 |
8822 | 12432 | 5.780282 | TCATCATAATCAATACTCCCTCCGT | 59.220 | 40.000 | 0.00 | 0.00 | 0.00 | 4.69 |
8823 | 12433 | 6.951778 | TCATCATAATCAATACTCCCTCCGTA | 59.048 | 38.462 | 0.00 | 0.00 | 0.00 | 4.02 |
8825 | 12435 | 7.606135 | TCATAATCAATACTCCCTCCGTAAA | 57.394 | 36.000 | 0.00 | 0.00 | 0.00 | 2.01 |
8826 | 12436 | 7.667557 | TCATAATCAATACTCCCTCCGTAAAG | 58.332 | 38.462 | 0.00 | 0.00 | 0.00 | 1.85 |
8827 | 12437 | 7.507956 | TCATAATCAATACTCCCTCCGTAAAGA | 59.492 | 37.037 | 0.00 | 0.00 | 0.00 | 2.52 |
8828 | 12438 | 6.555463 | AATCAATACTCCCTCCGTAAAGAA | 57.445 | 37.500 | 0.00 | 0.00 | 0.00 | 2.52 |
8830 | 12440 | 6.555463 | TCAATACTCCCTCCGTAAAGAAAT | 57.445 | 37.500 | 0.00 | 0.00 | 0.00 | 2.17 |
8831 | 12441 | 7.664552 | TCAATACTCCCTCCGTAAAGAAATA | 57.335 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
8833 | 12443 | 8.542080 | TCAATACTCCCTCCGTAAAGAAATAAA | 58.458 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
8835 | 12445 | 8.959705 | ATACTCCCTCCGTAAAGAAATAAAAG | 57.040 | 34.615 | 0.00 | 0.00 | 0.00 | 2.27 |
8836 | 12446 | 7.012661 | ACTCCCTCCGTAAAGAAATAAAAGA | 57.987 | 36.000 | 0.00 | 0.00 | 0.00 | 2.52 |
8837 | 12447 | 7.104290 | ACTCCCTCCGTAAAGAAATAAAAGAG | 58.896 | 38.462 | 0.00 | 0.00 | 0.00 | 2.85 |
8838 | 12448 | 5.878669 | TCCCTCCGTAAAGAAATAAAAGAGC | 59.121 | 40.000 | 0.00 | 0.00 | 0.00 | 4.09 |
8839 | 12449 | 5.220605 | CCCTCCGTAAAGAAATAAAAGAGCG | 60.221 | 44.000 | 0.00 | 0.00 | 0.00 | 5.03 |
8841 | 12451 | 6.128363 | CCTCCGTAAAGAAATAAAAGAGCGTT | 60.128 | 38.462 | 0.00 | 0.00 | 0.00 | 4.84 |
8842 | 12452 | 6.824557 | TCCGTAAAGAAATAAAAGAGCGTTC | 58.175 | 36.000 | 0.00 | 0.00 | 0.00 | 3.95 |
8844 | 12454 | 6.736853 | CCGTAAAGAAATAAAAGAGCGTTCAG | 59.263 | 38.462 | 1.01 | 0.00 | 0.00 | 3.02 |
8845 | 12455 | 7.359765 | CCGTAAAGAAATAAAAGAGCGTTCAGA | 60.360 | 37.037 | 1.01 | 0.00 | 0.00 | 3.27 |
8847 | 12457 | 9.479278 | GTAAAGAAATAAAAGAGCGTTCAGATC | 57.521 | 33.333 | 1.01 | 0.00 | 35.01 | 2.75 |
8848 | 12458 | 7.672983 | AAGAAATAAAAGAGCGTTCAGATCA | 57.327 | 32.000 | 1.01 | 0.00 | 37.82 | 2.92 |
8850 | 12460 | 6.876257 | AGAAATAAAAGAGCGTTCAGATCACT | 59.124 | 34.615 | 1.01 | 0.00 | 37.82 | 3.41 |
8851 | 12461 | 8.035394 | AGAAATAAAAGAGCGTTCAGATCACTA | 58.965 | 33.333 | 1.01 | 0.00 | 37.82 | 2.74 |
8852 | 12462 | 7.527084 | AATAAAAGAGCGTTCAGATCACTAC | 57.473 | 36.000 | 1.01 | 0.00 | 37.82 | 2.73 |
8853 | 12463 | 4.792521 | AAAGAGCGTTCAGATCACTACT | 57.207 | 40.909 | 1.01 | 0.00 | 37.82 | 2.57 |
8854 | 12464 | 4.792521 | AAGAGCGTTCAGATCACTACTT | 57.207 | 40.909 | 1.01 | 0.00 | 37.82 | 2.24 |
8855 | 12465 | 4.792521 | AGAGCGTTCAGATCACTACTTT | 57.207 | 40.909 | 1.01 | 0.00 | 37.82 | 2.66 |
8856 | 12466 | 5.899120 | AGAGCGTTCAGATCACTACTTTA | 57.101 | 39.130 | 1.01 | 0.00 | 37.82 | 1.85 |
8857 | 12467 | 5.885881 | AGAGCGTTCAGATCACTACTTTAG | 58.114 | 41.667 | 1.01 | 0.00 | 37.82 | 1.85 |
8858 | 12468 | 5.416326 | AGAGCGTTCAGATCACTACTTTAGT | 59.584 | 40.000 | 1.01 | 0.00 | 37.82 | 2.24 |
8904 | 12514 | 9.496710 | TTCTTTATAGAGGGAGTACCAATTACA | 57.503 | 33.333 | 0.00 | 0.00 | 43.89 | 2.41 |
8905 | 12515 | 8.921205 | TCTTTATAGAGGGAGTACCAATTACAC | 58.079 | 37.037 | 0.00 | 0.00 | 43.89 | 2.90 |
8906 | 12516 | 8.849543 | TTTATAGAGGGAGTACCAATTACACT | 57.150 | 34.615 | 0.00 | 0.00 | 43.89 | 3.55 |
8907 | 12517 | 6.732896 | ATAGAGGGAGTACCAATTACACTG | 57.267 | 41.667 | 0.00 | 0.00 | 43.89 | 3.66 |
8933 | 13938 | 5.826586 | ACATCACAGTTAGAGATCATCGAC | 58.173 | 41.667 | 0.00 | 0.00 | 0.00 | 4.20 |
8948 | 13953 | 2.544480 | TCGACTGATACAGTTCGCAG | 57.456 | 50.000 | 5.88 | 0.00 | 45.44 | 5.18 |
8970 | 13975 | 1.678627 | ACTACAGAGCAGGACGCATAG | 59.321 | 52.381 | 0.00 | 0.00 | 46.13 | 2.23 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
10 | 11 | 2.041265 | AGGTGAAGATCCCCGCCT | 59.959 | 61.111 | 10.34 | 10.34 | 38.38 | 5.52 |
11 | 12 | 2.190578 | CAGGTGAAGATCCCCGCC | 59.809 | 66.667 | 6.46 | 6.46 | 0.00 | 6.13 |
143 | 144 | 3.505386 | GGATGAGGAGAGGAGCTATCAA | 58.495 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
175 | 176 | 2.787473 | TCGGGAGCTGATGATTGTTT | 57.213 | 45.000 | 0.00 | 0.00 | 0.00 | 2.83 |
177 | 178 | 2.804572 | CGATTCGGGAGCTGATGATTGT | 60.805 | 50.000 | 0.00 | 0.00 | 0.00 | 2.71 |
181 | 182 | 1.742146 | CCGATTCGGGAGCTGATGA | 59.258 | 57.895 | 17.53 | 0.00 | 44.15 | 2.92 |
235 | 237 | 1.955778 | TCGACGTCAGGTAAACAGGAA | 59.044 | 47.619 | 17.16 | 0.00 | 0.00 | 3.36 |
243 | 245 | 0.384309 | GCCATCATCGACGTCAGGTA | 59.616 | 55.000 | 17.16 | 0.00 | 0.00 | 3.08 |
293 | 295 | 4.764336 | TACGTGTCGGCGGCGAAG | 62.764 | 66.667 | 36.31 | 28.87 | 35.98 | 3.79 |
344 | 346 | 4.369872 | AGACAGAGGGAGGAAGATTTGAT | 58.630 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
365 | 367 | 3.053455 | GGATCTCAATCCGAAAGCGTAG | 58.947 | 50.000 | 0.00 | 0.00 | 42.16 | 3.51 |
413 | 418 | 5.619625 | ATTTCCTGAAGAGAAAGAAAGCG | 57.380 | 39.130 | 0.00 | 0.00 | 36.71 | 4.68 |
414 | 419 | 6.082984 | CGAATTTCCTGAAGAGAAAGAAAGC | 58.917 | 40.000 | 0.00 | 0.00 | 36.71 | 3.51 |
415 | 420 | 6.082984 | GCGAATTTCCTGAAGAGAAAGAAAG | 58.917 | 40.000 | 0.00 | 0.00 | 36.71 | 2.62 |
416 | 421 | 5.530915 | TGCGAATTTCCTGAAGAGAAAGAAA | 59.469 | 36.000 | 0.00 | 0.00 | 36.71 | 2.52 |
417 | 422 | 5.049405 | GTGCGAATTTCCTGAAGAGAAAGAA | 60.049 | 40.000 | 0.00 | 0.00 | 36.71 | 2.52 |
418 | 423 | 4.452455 | GTGCGAATTTCCTGAAGAGAAAGA | 59.548 | 41.667 | 0.00 | 0.00 | 36.71 | 2.52 |
419 | 424 | 4.453819 | AGTGCGAATTTCCTGAAGAGAAAG | 59.546 | 41.667 | 0.00 | 0.00 | 36.71 | 2.62 |
430 | 435 | 6.791303 | TGGATACATTAAAGTGCGAATTTCC | 58.209 | 36.000 | 0.00 | 0.00 | 46.17 | 3.13 |
480 | 495 | 3.350219 | TTCATTTGAGACCCTACAGCC | 57.650 | 47.619 | 0.00 | 0.00 | 0.00 | 4.85 |
550 | 568 | 9.454859 | CATCCTTTAGACCTTGTTTCTAAGATT | 57.545 | 33.333 | 0.00 | 0.00 | 36.99 | 2.40 |
551 | 569 | 8.826765 | TCATCCTTTAGACCTTGTTTCTAAGAT | 58.173 | 33.333 | 0.00 | 0.00 | 36.99 | 2.40 |
554 | 572 | 9.635404 | TTTTCATCCTTTAGACCTTGTTTCTAA | 57.365 | 29.630 | 0.00 | 0.00 | 34.43 | 2.10 |
582 | 600 | 8.758829 | AGGTCTGAAAGTTTCCTGTAAAATTTT | 58.241 | 29.630 | 13.01 | 8.75 | 43.36 | 1.82 |
586 | 604 | 8.810990 | TTAAGGTCTGAAAGTTTCCTGTAAAA | 57.189 | 30.769 | 13.01 | 0.00 | 33.05 | 1.52 |
597 | 615 | 9.495572 | CTCAGTTTATTCTTAAGGTCTGAAAGT | 57.504 | 33.333 | 1.85 | 0.00 | 33.76 | 2.66 |
609 | 627 | 4.501071 | GGGCGTGTCTCAGTTTATTCTTA | 58.499 | 43.478 | 0.00 | 0.00 | 0.00 | 2.10 |
680 | 699 | 1.339097 | ATGGTAGAGGGGTATGCGTC | 58.661 | 55.000 | 0.00 | 0.00 | 0.00 | 5.19 |
685 | 704 | 6.071728 | CGTCGTAATTTATGGTAGAGGGGTAT | 60.072 | 42.308 | 0.00 | 0.00 | 0.00 | 2.73 |
699 | 719 | 4.218200 | TGGGAGAGTGAACGTCGTAATTTA | 59.782 | 41.667 | 0.00 | 0.00 | 0.00 | 1.40 |
725 | 745 | 0.035458 | GTTGGCCTATCATCTCCCCG | 59.965 | 60.000 | 3.32 | 0.00 | 0.00 | 5.73 |
767 | 787 | 1.819632 | CGTGGCCTAGGTCAATGGC | 60.820 | 63.158 | 19.95 | 4.43 | 45.42 | 4.40 |
799 | 819 | 1.990060 | CTGGATGGGGTCGACAGGT | 60.990 | 63.158 | 18.91 | 0.00 | 0.00 | 4.00 |
802 | 822 | 0.252330 | TTACCTGGATGGGGTCGACA | 60.252 | 55.000 | 18.91 | 0.00 | 41.11 | 4.35 |
812 | 832 | 6.290294 | ACGTTGTAACATACTTACCTGGAT | 57.710 | 37.500 | 0.00 | 0.00 | 0.00 | 3.41 |
836 | 856 | 1.264749 | ATAAGGAGCGGCACCTGTCA | 61.265 | 55.000 | 19.80 | 8.70 | 37.85 | 3.58 |
838 | 858 | 1.221840 | CATAAGGAGCGGCACCTGT | 59.778 | 57.895 | 19.80 | 11.95 | 37.85 | 4.00 |
841 | 861 | 0.880718 | GCTACATAAGGAGCGGCACC | 60.881 | 60.000 | 8.52 | 8.52 | 0.00 | 5.01 |
978 | 998 | 2.983879 | CGGGCCTGGGGAAACATCT | 61.984 | 63.158 | 2.57 | 0.00 | 0.00 | 2.90 |
1266 | 1288 | 3.570621 | TAACGCACTAACCGCCGCA | 62.571 | 57.895 | 0.00 | 0.00 | 0.00 | 5.69 |
1268 | 1290 | 2.447070 | GGTAACGCACTAACCGCCG | 61.447 | 63.158 | 0.00 | 0.00 | 0.00 | 6.46 |
1317 | 1348 | 1.075970 | CTCCTCCCCATCGTCCTCA | 60.076 | 63.158 | 0.00 | 0.00 | 0.00 | 3.86 |
1499 | 1530 | 7.704472 | CAGTACCAAGCAATCTAGAACTAGAAG | 59.296 | 40.741 | 14.25 | 11.28 | 44.44 | 2.85 |
1502 | 1533 | 5.751028 | GCAGTACCAAGCAATCTAGAACTAG | 59.249 | 44.000 | 0.00 | 2.77 | 34.56 | 2.57 |
1503 | 1534 | 5.422331 | AGCAGTACCAAGCAATCTAGAACTA | 59.578 | 40.000 | 0.00 | 0.00 | 0.00 | 2.24 |
1504 | 1535 | 4.223923 | AGCAGTACCAAGCAATCTAGAACT | 59.776 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
1505 | 1536 | 4.331168 | CAGCAGTACCAAGCAATCTAGAAC | 59.669 | 45.833 | 0.00 | 0.00 | 0.00 | 3.01 |
1506 | 1537 | 4.507710 | CAGCAGTACCAAGCAATCTAGAA | 58.492 | 43.478 | 0.00 | 0.00 | 0.00 | 2.10 |
1507 | 1538 | 3.679917 | GCAGCAGTACCAAGCAATCTAGA | 60.680 | 47.826 | 0.00 | 0.00 | 0.00 | 2.43 |
1575 | 1606 | 2.351350 | GGGAAACACAGCACAATTACCG | 60.351 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
1628 | 1659 | 0.253347 | ACCTCCAGTCCATCCACCAT | 60.253 | 55.000 | 0.00 | 0.00 | 0.00 | 3.55 |
1630 | 1661 | 0.253327 | GAACCTCCAGTCCATCCACC | 59.747 | 60.000 | 0.00 | 0.00 | 0.00 | 4.61 |
1675 | 1706 | 1.064060 | GAGTCAAATATGTGCCACCGC | 59.936 | 52.381 | 0.00 | 0.00 | 0.00 | 5.68 |
1677 | 1708 | 5.506317 | GCTTATGAGTCAAATATGTGCCACC | 60.506 | 44.000 | 0.00 | 0.00 | 0.00 | 4.61 |
1921 | 1952 | 5.220777 | GCTACTCAACAAGCAAAACACAGTA | 60.221 | 40.000 | 0.00 | 0.00 | 38.63 | 2.74 |
1937 | 1968 | 6.701145 | AGATTATCTTCGTCTGCTACTCAA | 57.299 | 37.500 | 0.00 | 0.00 | 0.00 | 3.02 |
1982 | 2013 | 6.499350 | AGAACTTAGGTGACCCACTTACAATA | 59.501 | 38.462 | 0.00 | 0.00 | 34.40 | 1.90 |
2045 | 2076 | 4.450082 | AATTTGACGGCCCATTTTAGAC | 57.550 | 40.909 | 0.00 | 0.00 | 0.00 | 2.59 |
2059 | 2090 | 4.286910 | TCTGCGTTGTTAGCAAATTTGAC | 58.713 | 39.130 | 22.31 | 11.47 | 44.67 | 3.18 |
2062 | 2093 | 5.231991 | CAGTTTCTGCGTTGTTAGCAAATTT | 59.768 | 36.000 | 0.00 | 0.00 | 44.67 | 1.82 |
2341 | 2373 | 5.652891 | CAGGTGGAGTGTAGTGTTAGAGTAT | 59.347 | 44.000 | 0.00 | 0.00 | 0.00 | 2.12 |
2418 | 2450 | 4.000988 | AGGTGTTAGGTTTATCTTGCGTG | 58.999 | 43.478 | 0.00 | 0.00 | 0.00 | 5.34 |
2686 | 2744 | 0.326264 | GGAGAAGGCATGGTGTCACT | 59.674 | 55.000 | 2.35 | 0.00 | 0.00 | 3.41 |
2716 | 2774 | 0.030638 | GTGCGGTGCAAATCAACAGT | 59.969 | 50.000 | 0.00 | 0.00 | 41.47 | 3.55 |
2723 | 2781 | 1.526575 | CTTCCCTGTGCGGTGCAAAT | 61.527 | 55.000 | 0.00 | 0.00 | 41.47 | 2.32 |
2794 | 2857 | 1.402852 | CCTCAAAGTCTGCGACATCGA | 60.403 | 52.381 | 5.26 | 0.00 | 43.02 | 3.59 |
2851 | 2914 | 1.686800 | GGCATGCAGTTTCCCCCAT | 60.687 | 57.895 | 21.36 | 0.00 | 0.00 | 4.00 |
2862 | 2925 | 2.279743 | GGGGATCTTGGGCATGCA | 59.720 | 61.111 | 21.36 | 0.00 | 0.00 | 3.96 |
2883 | 2946 | 1.372748 | CCTCGATCTCATCCGCTGC | 60.373 | 63.158 | 0.00 | 0.00 | 0.00 | 5.25 |
2934 | 2997 | 2.046988 | CGTGGTCTGCAGATGCCA | 60.047 | 61.111 | 21.47 | 20.29 | 41.18 | 4.92 |
2935 | 2998 | 3.503363 | GCGTGGTCTGCAGATGCC | 61.503 | 66.667 | 21.47 | 17.74 | 41.18 | 4.40 |
2936 | 2999 | 2.044832 | GATGCGTGGTCTGCAGATGC | 62.045 | 60.000 | 21.47 | 20.46 | 46.98 | 3.91 |
2937 | 3000 | 0.461516 | AGATGCGTGGTCTGCAGATG | 60.462 | 55.000 | 21.47 | 11.41 | 46.98 | 2.90 |
2938 | 3001 | 0.179089 | GAGATGCGTGGTCTGCAGAT | 60.179 | 55.000 | 21.47 | 0.62 | 46.98 | 2.90 |
2939 | 3002 | 1.216444 | GAGATGCGTGGTCTGCAGA | 59.784 | 57.895 | 13.74 | 13.74 | 46.98 | 4.26 |
2940 | 3003 | 1.812922 | GGAGATGCGTGGTCTGCAG | 60.813 | 63.158 | 7.63 | 7.63 | 46.98 | 4.41 |
2942 | 3005 | 2.512515 | GGGAGATGCGTGGTCTGC | 60.513 | 66.667 | 0.00 | 0.00 | 33.79 | 4.26 |
2943 | 3006 | 2.202797 | CGGGAGATGCGTGGTCTG | 60.203 | 66.667 | 0.00 | 0.00 | 0.00 | 3.51 |
2944 | 3007 | 4.148825 | GCGGGAGATGCGTGGTCT | 62.149 | 66.667 | 0.00 | 0.00 | 0.00 | 3.85 |
2945 | 3008 | 4.451150 | TGCGGGAGATGCGTGGTC | 62.451 | 66.667 | 0.00 | 0.00 | 34.24 | 4.02 |
2946 | 3009 | 4.760047 | GTGCGGGAGATGCGTGGT | 62.760 | 66.667 | 0.00 | 0.00 | 34.24 | 4.16 |
2947 | 3010 | 4.758251 | TGTGCGGGAGATGCGTGG | 62.758 | 66.667 | 0.00 | 0.00 | 34.24 | 4.94 |
2948 | 3011 | 2.512286 | ATGTGCGGGAGATGCGTG | 60.512 | 61.111 | 0.00 | 0.00 | 34.24 | 5.34 |
2949 | 3012 | 2.512286 | CATGTGCGGGAGATGCGT | 60.512 | 61.111 | 0.00 | 0.00 | 34.24 | 5.24 |
2950 | 3013 | 3.945434 | GCATGTGCGGGAGATGCG | 61.945 | 66.667 | 15.31 | 0.00 | 33.67 | 4.73 |
2951 | 3014 | 3.589881 | GGCATGTGCGGGAGATGC | 61.590 | 66.667 | 20.86 | 20.86 | 43.26 | 3.91 |
2952 | 3015 | 3.274586 | CGGCATGTGCGGGAGATG | 61.275 | 66.667 | 2.14 | 2.14 | 43.26 | 2.90 |
2953 | 3016 | 3.469970 | TCGGCATGTGCGGGAGAT | 61.470 | 61.111 | 11.82 | 0.00 | 43.26 | 2.75 |
2954 | 3017 | 4.451150 | GTCGGCATGTGCGGGAGA | 62.451 | 66.667 | 11.82 | 0.93 | 43.26 | 3.71 |
2955 | 3018 | 4.758251 | TGTCGGCATGTGCGGGAG | 62.758 | 66.667 | 11.82 | 0.00 | 43.26 | 4.30 |
2958 | 3021 | 4.088762 | GTGTGTCGGCATGTGCGG | 62.089 | 66.667 | 0.00 | 6.24 | 43.26 | 5.69 |
2959 | 3022 | 1.686566 | CTAGTGTGTCGGCATGTGCG | 61.687 | 60.000 | 0.00 | 0.00 | 43.26 | 5.34 |
2960 | 3023 | 1.361668 | CCTAGTGTGTCGGCATGTGC | 61.362 | 60.000 | 0.00 | 0.00 | 41.14 | 4.57 |
2961 | 3024 | 0.246360 | TCCTAGTGTGTCGGCATGTG | 59.754 | 55.000 | 0.00 | 0.00 | 0.00 | 3.21 |
2962 | 3025 | 0.532573 | CTCCTAGTGTGTCGGCATGT | 59.467 | 55.000 | 0.00 | 0.00 | 0.00 | 3.21 |
2963 | 3026 | 0.179100 | CCTCCTAGTGTGTCGGCATG | 60.179 | 60.000 | 0.00 | 0.00 | 0.00 | 4.06 |
2964 | 3027 | 1.961180 | GCCTCCTAGTGTGTCGGCAT | 61.961 | 60.000 | 0.00 | 0.00 | 37.48 | 4.40 |
2965 | 3028 | 2.646175 | GCCTCCTAGTGTGTCGGCA | 61.646 | 63.158 | 0.00 | 0.00 | 37.48 | 5.69 |
2966 | 3029 | 2.184579 | GCCTCCTAGTGTGTCGGC | 59.815 | 66.667 | 0.00 | 0.00 | 0.00 | 5.54 |
2967 | 3030 | 2.893398 | GGCCTCCTAGTGTGTCGG | 59.107 | 66.667 | 0.00 | 0.00 | 0.00 | 4.79 |
2968 | 3031 | 2.490217 | CGGCCTCCTAGTGTGTCG | 59.510 | 66.667 | 0.00 | 0.00 | 0.00 | 4.35 |
2969 | 3032 | 2.184579 | GCGGCCTCCTAGTGTGTC | 59.815 | 66.667 | 0.00 | 0.00 | 0.00 | 3.67 |
2970 | 3033 | 3.760035 | CGCGGCCTCCTAGTGTGT | 61.760 | 66.667 | 0.00 | 0.00 | 0.00 | 3.72 |
2995 | 3058 | 3.368571 | GGTTGTGAGGCTGCAGGC | 61.369 | 66.667 | 31.58 | 31.58 | 41.43 | 4.85 |
2996 | 3059 | 3.052082 | CGGTTGTGAGGCTGCAGG | 61.052 | 66.667 | 17.12 | 0.00 | 0.00 | 4.85 |
2997 | 3060 | 3.730761 | GCGGTTGTGAGGCTGCAG | 61.731 | 66.667 | 10.11 | 10.11 | 37.00 | 4.41 |
3000 | 3063 | 4.680237 | TCGGCGGTTGTGAGGCTG | 62.680 | 66.667 | 7.21 | 0.00 | 0.00 | 4.85 |
3001 | 3064 | 4.681978 | GTCGGCGGTTGTGAGGCT | 62.682 | 66.667 | 7.21 | 0.00 | 0.00 | 4.58 |
3002 | 3065 | 4.980805 | TGTCGGCGGTTGTGAGGC | 62.981 | 66.667 | 7.21 | 0.00 | 0.00 | 4.70 |
3003 | 3066 | 3.041940 | GTGTCGGCGGTTGTGAGG | 61.042 | 66.667 | 7.21 | 0.00 | 0.00 | 3.86 |
3004 | 3067 | 3.403057 | CGTGTCGGCGGTTGTGAG | 61.403 | 66.667 | 7.21 | 0.00 | 0.00 | 3.51 |
3005 | 3068 | 4.210093 | ACGTGTCGGCGGTTGTGA | 62.210 | 61.111 | 7.21 | 0.00 | 35.98 | 3.58 |
3006 | 3069 | 3.995669 | CACGTGTCGGCGGTTGTG | 61.996 | 66.667 | 7.58 | 7.56 | 35.98 | 3.33 |
3014 | 3077 | 4.789075 | CTACCCGCCACGTGTCGG | 62.789 | 72.222 | 29.85 | 29.85 | 44.89 | 4.79 |
3018 | 3081 | 4.508128 | ATCGCTACCCGCCACGTG | 62.508 | 66.667 | 9.08 | 9.08 | 36.73 | 4.49 |
3019 | 3082 | 4.203076 | GATCGCTACCCGCCACGT | 62.203 | 66.667 | 0.00 | 0.00 | 36.73 | 4.49 |
3020 | 3083 | 4.944372 | GGATCGCTACCCGCCACG | 62.944 | 72.222 | 0.00 | 0.00 | 36.73 | 4.94 |
3021 | 3084 | 3.379865 | TTGGATCGCTACCCGCCAC | 62.380 | 63.158 | 0.00 | 0.00 | 36.73 | 5.01 |
3022 | 3085 | 3.078196 | TTGGATCGCTACCCGCCA | 61.078 | 61.111 | 0.00 | 0.00 | 36.73 | 5.69 |
3023 | 3086 | 2.280186 | CTTGGATCGCTACCCGCC | 60.280 | 66.667 | 0.00 | 0.00 | 36.73 | 6.13 |
3024 | 3087 | 2.280186 | CCTTGGATCGCTACCCGC | 60.280 | 66.667 | 0.00 | 0.00 | 36.73 | 6.13 |
3025 | 3088 | 2.280186 | GCCTTGGATCGCTACCCG | 60.280 | 66.667 | 0.00 | 0.00 | 38.61 | 5.28 |
3026 | 3089 | 2.280186 | CGCCTTGGATCGCTACCC | 60.280 | 66.667 | 0.00 | 0.00 | 0.00 | 3.69 |
3027 | 3090 | 2.280186 | CCGCCTTGGATCGCTACC | 60.280 | 66.667 | 0.00 | 0.00 | 42.00 | 3.18 |
3028 | 3091 | 2.812499 | TCCGCCTTGGATCGCTAC | 59.188 | 61.111 | 0.00 | 0.00 | 43.74 | 3.58 |
3036 | 3099 | 2.032528 | TCACTGCTTCCGCCTTGG | 59.967 | 61.111 | 0.00 | 0.00 | 40.09 | 3.61 |
3037 | 3100 | 2.671177 | CGTCACTGCTTCCGCCTTG | 61.671 | 63.158 | 0.00 | 0.00 | 34.43 | 3.61 |
3038 | 3101 | 2.357517 | CGTCACTGCTTCCGCCTT | 60.358 | 61.111 | 0.00 | 0.00 | 34.43 | 4.35 |
3039 | 3102 | 3.303135 | TCGTCACTGCTTCCGCCT | 61.303 | 61.111 | 0.00 | 0.00 | 34.43 | 5.52 |
3040 | 3103 | 3.112709 | GTCGTCACTGCTTCCGCC | 61.113 | 66.667 | 0.00 | 0.00 | 34.43 | 6.13 |
3041 | 3104 | 3.470567 | CGTCGTCACTGCTTCCGC | 61.471 | 66.667 | 0.00 | 0.00 | 0.00 | 5.54 |
3042 | 3105 | 1.797933 | CTCGTCGTCACTGCTTCCG | 60.798 | 63.158 | 0.00 | 0.00 | 0.00 | 4.30 |
3043 | 3106 | 1.444553 | CCTCGTCGTCACTGCTTCC | 60.445 | 63.158 | 0.00 | 0.00 | 0.00 | 3.46 |
3044 | 3107 | 1.444553 | CCCTCGTCGTCACTGCTTC | 60.445 | 63.158 | 0.00 | 0.00 | 0.00 | 3.86 |
3045 | 3108 | 2.651361 | CCCTCGTCGTCACTGCTT | 59.349 | 61.111 | 0.00 | 0.00 | 0.00 | 3.91 |
3046 | 3109 | 4.057428 | GCCCTCGTCGTCACTGCT | 62.057 | 66.667 | 0.00 | 0.00 | 0.00 | 4.24 |
3057 | 3120 | 4.436998 | GTCCAGTCCACGCCCTCG | 62.437 | 72.222 | 0.00 | 0.00 | 42.43 | 4.63 |
3058 | 3121 | 2.584391 | AAGTCCAGTCCACGCCCTC | 61.584 | 63.158 | 0.00 | 0.00 | 0.00 | 4.30 |
3059 | 3122 | 2.526873 | AAGTCCAGTCCACGCCCT | 60.527 | 61.111 | 0.00 | 0.00 | 0.00 | 5.19 |
3060 | 3123 | 2.358737 | CAAGTCCAGTCCACGCCC | 60.359 | 66.667 | 0.00 | 0.00 | 0.00 | 6.13 |
3061 | 3124 | 2.358737 | CCAAGTCCAGTCCACGCC | 60.359 | 66.667 | 0.00 | 0.00 | 0.00 | 5.68 |
3062 | 3125 | 1.961277 | CACCAAGTCCAGTCCACGC | 60.961 | 63.158 | 0.00 | 0.00 | 0.00 | 5.34 |
3063 | 3126 | 0.105964 | TTCACCAAGTCCAGTCCACG | 59.894 | 55.000 | 0.00 | 0.00 | 0.00 | 4.94 |
3064 | 3127 | 1.884235 | CTTCACCAAGTCCAGTCCAC | 58.116 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
3065 | 3128 | 0.108585 | GCTTCACCAAGTCCAGTCCA | 59.891 | 55.000 | 0.00 | 0.00 | 31.45 | 4.02 |
3066 | 3129 | 0.951040 | CGCTTCACCAAGTCCAGTCC | 60.951 | 60.000 | 0.00 | 0.00 | 31.45 | 3.85 |
3067 | 3130 | 0.951040 | CCGCTTCACCAAGTCCAGTC | 60.951 | 60.000 | 0.00 | 0.00 | 31.45 | 3.51 |
3068 | 3131 | 1.071471 | CCGCTTCACCAAGTCCAGT | 59.929 | 57.895 | 0.00 | 0.00 | 31.45 | 4.00 |
3069 | 3132 | 1.672356 | CCCGCTTCACCAAGTCCAG | 60.672 | 63.158 | 0.00 | 0.00 | 31.45 | 3.86 |
3070 | 3133 | 2.144078 | TCCCGCTTCACCAAGTCCA | 61.144 | 57.895 | 0.00 | 0.00 | 31.45 | 4.02 |
3071 | 3134 | 1.671379 | GTCCCGCTTCACCAAGTCC | 60.671 | 63.158 | 0.00 | 0.00 | 31.45 | 3.85 |
3072 | 3135 | 0.670854 | GAGTCCCGCTTCACCAAGTC | 60.671 | 60.000 | 0.00 | 0.00 | 31.45 | 3.01 |
3073 | 3136 | 1.371558 | GAGTCCCGCTTCACCAAGT | 59.628 | 57.895 | 0.00 | 0.00 | 31.45 | 3.16 |
3074 | 3137 | 1.376037 | GGAGTCCCGCTTCACCAAG | 60.376 | 63.158 | 0.00 | 0.00 | 0.00 | 3.61 |
3075 | 3138 | 1.841556 | AGGAGTCCCGCTTCACCAA | 60.842 | 57.895 | 5.25 | 0.00 | 37.58 | 3.67 |
3076 | 3139 | 2.203788 | AGGAGTCCCGCTTCACCA | 60.204 | 61.111 | 5.25 | 0.00 | 37.58 | 4.17 |
3077 | 3140 | 2.266055 | CAGGAGTCCCGCTTCACC | 59.734 | 66.667 | 5.25 | 0.00 | 37.58 | 4.02 |
3078 | 3141 | 2.435059 | GCAGGAGTCCCGCTTCAC | 60.435 | 66.667 | 10.32 | 0.00 | 37.58 | 3.18 |
3079 | 3142 | 3.706373 | GGCAGGAGTCCCGCTTCA | 61.706 | 66.667 | 16.93 | 0.00 | 37.58 | 3.02 |
3080 | 3143 | 4.821589 | CGGCAGGAGTCCCGCTTC | 62.822 | 72.222 | 16.93 | 0.59 | 37.85 | 3.86 |
3103 | 3166 | 4.899239 | CTCTGGCCCCGCATCGAC | 62.899 | 72.222 | 0.00 | 0.00 | 0.00 | 4.20 |
3223 | 3286 | 4.856801 | ATCCATCGCCACCACCGC | 62.857 | 66.667 | 0.00 | 0.00 | 0.00 | 5.68 |
3224 | 3287 | 2.896854 | CATCCATCGCCACCACCG | 60.897 | 66.667 | 0.00 | 0.00 | 0.00 | 4.94 |
3225 | 3288 | 2.516930 | CCATCCATCGCCACCACC | 60.517 | 66.667 | 0.00 | 0.00 | 0.00 | 4.61 |
3226 | 3289 | 3.211963 | GCCATCCATCGCCACCAC | 61.212 | 66.667 | 0.00 | 0.00 | 0.00 | 4.16 |
3227 | 3290 | 3.279504 | TTGCCATCCATCGCCACCA | 62.280 | 57.895 | 0.00 | 0.00 | 0.00 | 4.17 |
3228 | 3291 | 2.440065 | TTGCCATCCATCGCCACC | 60.440 | 61.111 | 0.00 | 0.00 | 0.00 | 4.61 |
3229 | 3292 | 1.750399 | AGTTGCCATCCATCGCCAC | 60.750 | 57.895 | 0.00 | 0.00 | 0.00 | 5.01 |
3230 | 3293 | 1.750018 | CAGTTGCCATCCATCGCCA | 60.750 | 57.895 | 0.00 | 0.00 | 0.00 | 5.69 |
3231 | 3294 | 3.113745 | CAGTTGCCATCCATCGCC | 58.886 | 61.111 | 0.00 | 0.00 | 0.00 | 5.54 |
3232 | 3295 | 2.332362 | CTGCAGTTGCCATCCATCGC | 62.332 | 60.000 | 5.25 | 0.00 | 41.18 | 4.58 |
3233 | 3296 | 1.725665 | CTGCAGTTGCCATCCATCG | 59.274 | 57.895 | 5.25 | 0.00 | 41.18 | 3.84 |
3234 | 3297 | 1.436336 | GCTGCAGTTGCCATCCATC | 59.564 | 57.895 | 16.64 | 0.00 | 41.18 | 3.51 |
3235 | 3298 | 2.412323 | CGCTGCAGTTGCCATCCAT | 61.412 | 57.895 | 16.64 | 0.00 | 41.18 | 3.41 |
3236 | 3299 | 3.057548 | CGCTGCAGTTGCCATCCA | 61.058 | 61.111 | 16.64 | 0.00 | 41.18 | 3.41 |
3237 | 3300 | 2.747460 | TCGCTGCAGTTGCCATCC | 60.747 | 61.111 | 16.64 | 0.00 | 41.18 | 3.51 |
3238 | 3301 | 2.482374 | GTCGCTGCAGTTGCCATC | 59.518 | 61.111 | 16.64 | 0.00 | 41.18 | 3.51 |
3239 | 3302 | 3.425713 | CGTCGCTGCAGTTGCCAT | 61.426 | 61.111 | 16.64 | 0.00 | 41.18 | 4.40 |
4027 | 6466 | 1.201424 | GATCACCGGGGTCCTTAACT | 58.799 | 55.000 | 2.12 | 0.00 | 0.00 | 2.24 |
4031 | 6470 | 1.689582 | GGAGATCACCGGGGTCCTT | 60.690 | 63.158 | 2.12 | 0.00 | 0.00 | 3.36 |
4114 | 6553 | 4.147449 | CGCTGGTCGCATCCTCCA | 62.147 | 66.667 | 0.00 | 0.00 | 39.08 | 3.86 |
4178 | 6659 | 3.677148 | GCTCAGTTCCGATCATGTCTTCA | 60.677 | 47.826 | 0.00 | 0.00 | 0.00 | 3.02 |
4437 | 6918 | 5.163519 | TGTTAGAGTACGTAATGGGCCTAAC | 60.164 | 44.000 | 18.13 | 18.13 | 36.77 | 2.34 |
4465 | 6946 | 4.811969 | AATCAAAAGGCTCAATGATGCA | 57.188 | 36.364 | 9.51 | 0.00 | 33.06 | 3.96 |
4466 | 6947 | 7.493320 | TCAAATAATCAAAAGGCTCAATGATGC | 59.507 | 33.333 | 9.51 | 0.00 | 33.06 | 3.91 |
4519 | 7000 | 4.546674 | GTTCATCACCCCCTGGATATTTT | 58.453 | 43.478 | 0.00 | 0.00 | 34.81 | 1.82 |
4520 | 7001 | 3.117131 | GGTTCATCACCCCCTGGATATTT | 60.117 | 47.826 | 0.00 | 0.00 | 40.19 | 1.40 |
4521 | 7002 | 2.447047 | GGTTCATCACCCCCTGGATATT | 59.553 | 50.000 | 0.00 | 0.00 | 40.19 | 1.28 |
4522 | 7003 | 2.065799 | GGTTCATCACCCCCTGGATAT | 58.934 | 52.381 | 0.00 | 0.00 | 40.19 | 1.63 |
4523 | 7004 | 1.518367 | GGTTCATCACCCCCTGGATA | 58.482 | 55.000 | 0.00 | 0.00 | 40.19 | 2.59 |
4534 | 7288 | 8.508875 | GGTTTAAAGAATAAACGAGGTTCATCA | 58.491 | 33.333 | 0.00 | 0.00 | 38.06 | 3.07 |
4615 | 7695 | 7.093684 | TGAGTTATTTTGGGGGCTACAAATAAC | 60.094 | 37.037 | 14.40 | 14.40 | 37.62 | 1.89 |
4705 | 7785 | 2.739932 | GCAAGATCTGCCGTAGACATGT | 60.740 | 50.000 | 0.00 | 0.00 | 46.13 | 3.21 |
4774 | 7854 | 8.208224 | TGATTCTAAACTAGGAGTTGTTGACAA | 58.792 | 33.333 | 0.00 | 0.00 | 38.66 | 3.18 |
4984 | 8074 | 8.556589 | TGGTCAGAAATATATCCAAGGAAAAGA | 58.443 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
5140 | 8231 | 8.999431 | GTCAACAGGAAAGAGTGTTCATATAAA | 58.001 | 33.333 | 0.00 | 0.00 | 34.62 | 1.40 |
5142 | 8233 | 7.676004 | TGTCAACAGGAAAGAGTGTTCATATA | 58.324 | 34.615 | 0.00 | 0.00 | 34.62 | 0.86 |
5143 | 8234 | 6.533730 | TGTCAACAGGAAAGAGTGTTCATAT | 58.466 | 36.000 | 0.00 | 0.00 | 34.62 | 1.78 |
5160 | 8251 | 6.765512 | TCTTACATTCAGTGAACATGTCAACA | 59.234 | 34.615 | 13.97 | 0.00 | 38.23 | 3.33 |
5161 | 8252 | 7.189693 | TCTTACATTCAGTGAACATGTCAAC | 57.810 | 36.000 | 13.97 | 0.19 | 38.23 | 3.18 |
5252 | 8343 | 5.005740 | CACCAGGATTTCTTGATTCACAGA | 58.994 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
5348 | 8439 | 8.925161 | TGCTAATAGTTTGTTATCCATTTTGC | 57.075 | 30.769 | 0.00 | 0.00 | 0.00 | 3.68 |
5438 | 8529 | 4.570772 | GCAAACGCCTATGATTTACTCAGA | 59.429 | 41.667 | 0.00 | 0.00 | 37.28 | 3.27 |
5502 | 8593 | 7.604164 | TCAACTAAAAAGAGAGTAATCAGGCAG | 59.396 | 37.037 | 0.00 | 0.00 | 0.00 | 4.85 |
5526 | 8617 | 2.421073 | GCATGCACAAGCTACAGAATCA | 59.579 | 45.455 | 14.21 | 0.00 | 42.74 | 2.57 |
5550 | 8641 | 5.368256 | AGCAGAAGTGAACATTCAACATC | 57.632 | 39.130 | 0.00 | 0.00 | 39.21 | 3.06 |
5551 | 8642 | 7.175467 | TCAATAGCAGAAGTGAACATTCAACAT | 59.825 | 33.333 | 0.00 | 0.00 | 39.21 | 2.71 |
5590 | 8681 | 6.015180 | ACATTTACACTGAACTGAAATGGCAT | 60.015 | 34.615 | 0.00 | 0.00 | 40.29 | 4.40 |
5678 | 8769 | 6.439636 | AGAGAATATGCCAGTTGCCTATAA | 57.560 | 37.500 | 0.00 | 0.00 | 40.16 | 0.98 |
6060 | 9287 | 8.661352 | AACAAAAAGGTTTATTTCCTGACATG | 57.339 | 30.769 | 0.00 | 0.00 | 35.27 | 3.21 |
6061 | 9288 | 8.482128 | TGAACAAAAAGGTTTATTTCCTGACAT | 58.518 | 29.630 | 0.00 | 0.00 | 35.27 | 3.06 |
6168 | 9395 | 0.514691 | CCTGTCGCTTTGAGCTTGAC | 59.485 | 55.000 | 0.00 | 0.48 | 39.60 | 3.18 |
6250 | 9477 | 7.002250 | TGCCATTTTCTTCATAATTGGTTGA | 57.998 | 32.000 | 0.00 | 0.00 | 31.70 | 3.18 |
6428 | 9660 | 5.527582 | GGCACTAGAAAACAACTCTCAAGAA | 59.472 | 40.000 | 0.00 | 0.00 | 0.00 | 2.52 |
6497 | 9730 | 5.125356 | CAAGATACCAAGGCATGTACATGA | 58.875 | 41.667 | 34.65 | 15.54 | 41.20 | 3.07 |
6516 | 9749 | 4.431809 | CAAAGTTGGCATGACAAACAAGA | 58.568 | 39.130 | 17.49 | 0.00 | 31.17 | 3.02 |
6627 | 9860 | 3.181445 | ACTTCAGAACATGGTGCCTTACA | 60.181 | 43.478 | 0.00 | 0.00 | 0.00 | 2.41 |
6657 | 9890 | 8.393366 | CAGGACAAACTCATTCTACAACATATG | 58.607 | 37.037 | 0.00 | 0.00 | 0.00 | 1.78 |
6849 | 10404 | 8.836268 | ACATAAGGTGACTACGAATAAACAAA | 57.164 | 30.769 | 0.00 | 0.00 | 42.68 | 2.83 |
6893 | 10448 | 5.186603 | TGTCTAGAGAACATGCAGATCTGTT | 59.813 | 40.000 | 23.38 | 10.94 | 38.26 | 3.16 |
7116 | 10672 | 3.888323 | ACATTGTTGGTTGTCATGCTGTA | 59.112 | 39.130 | 0.00 | 0.00 | 0.00 | 2.74 |
7228 | 10784 | 3.753815 | ACAAAATTTTGGGGAGCATTGG | 58.246 | 40.909 | 29.37 | 5.58 | 42.34 | 3.16 |
7242 | 10798 | 6.205270 | GCAAATGGAATCAGGTGAACAAAATT | 59.795 | 34.615 | 0.00 | 0.00 | 0.00 | 1.82 |
7443 | 11048 | 2.560504 | TGTCAGTTACAAGTGCCACAG | 58.439 | 47.619 | 0.00 | 0.00 | 34.29 | 3.66 |
7480 | 11085 | 9.934190 | TCAGTACGTTTAAAGTTTAAATGTTCC | 57.066 | 29.630 | 34.26 | 27.19 | 37.66 | 3.62 |
7637 | 11242 | 4.587262 | ACCTGTAATCCAGCATATACGTGA | 59.413 | 41.667 | 0.00 | 0.00 | 40.06 | 4.35 |
7700 | 11305 | 4.761739 | TCTTGTCACCCTTTCAAATAGCAG | 59.238 | 41.667 | 0.00 | 0.00 | 0.00 | 4.24 |
7807 | 11412 | 6.884832 | TGTATGAACTGGGTTTGTAGATAGG | 58.115 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
7917 | 11522 | 4.010349 | AGCTGGCAAGTACCTATTTTCAC | 58.990 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
7940 | 11547 | 3.181506 | GGCAGAATCGGTAAGAGCTTTTG | 60.182 | 47.826 | 0.00 | 0.00 | 0.00 | 2.44 |
7953 | 11560 | 1.073964 | CATAGGCATCGGCAGAATCG | 58.926 | 55.000 | 0.00 | 0.00 | 43.71 | 3.34 |
8178 | 11785 | 1.536662 | ACCCGAGCTTCCCAGAACT | 60.537 | 57.895 | 0.00 | 0.00 | 0.00 | 3.01 |
8218 | 11825 | 0.390866 | CACGAAGGATGTGCTGCTCT | 60.391 | 55.000 | 0.00 | 0.00 | 0.00 | 4.09 |
8295 | 11902 | 2.349755 | GGTTCCGCTGCAGGGTAA | 59.650 | 61.111 | 26.94 | 16.81 | 0.00 | 2.85 |
8388 | 11995 | 2.027314 | CGGCCTGAGATCAGCGAG | 59.973 | 66.667 | 0.00 | 0.00 | 42.47 | 5.03 |
8417 | 12024 | 2.354704 | CGCAAACCTCAGGTCAAGGATA | 60.355 | 50.000 | 0.00 | 0.00 | 37.35 | 2.59 |
8465 | 12072 | 3.997064 | CTCCTCGCTCAAGCACCCG | 62.997 | 68.421 | 2.50 | 0.00 | 42.21 | 5.28 |
8574 | 12184 | 5.078411 | AGACCTGTTCATGCTAGTACAAG | 57.922 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
8619 | 12229 | 6.584185 | TTGTGTACTAAGATGTGCAGTCTA | 57.416 | 37.500 | 2.20 | 0.00 | 33.52 | 2.59 |
8620 | 12230 | 5.468540 | TTGTGTACTAAGATGTGCAGTCT | 57.531 | 39.130 | 0.00 | 0.00 | 33.52 | 3.24 |
8621 | 12231 | 6.368791 | TGATTTGTGTACTAAGATGTGCAGTC | 59.631 | 38.462 | 0.00 | 0.00 | 33.52 | 3.51 |
8623 | 12233 | 6.726258 | TGATTTGTGTACTAAGATGTGCAG | 57.274 | 37.500 | 0.00 | 0.00 | 33.52 | 4.41 |
8624 | 12234 | 6.347321 | CGTTGATTTGTGTACTAAGATGTGCA | 60.347 | 38.462 | 0.00 | 0.00 | 0.00 | 4.57 |
8625 | 12235 | 6.015504 | CGTTGATTTGTGTACTAAGATGTGC | 58.984 | 40.000 | 0.00 | 0.00 | 0.00 | 4.57 |
8637 | 12247 | 4.307432 | CTGAGGAGTACGTTGATTTGTGT | 58.693 | 43.478 | 0.00 | 0.00 | 0.00 | 3.72 |
8650 | 12260 | 4.536765 | TCATACATGTCTGCTGAGGAGTA | 58.463 | 43.478 | 0.00 | 0.00 | 0.00 | 2.59 |
8651 | 12261 | 3.369175 | TCATACATGTCTGCTGAGGAGT | 58.631 | 45.455 | 0.00 | 0.00 | 0.00 | 3.85 |
8652 | 12262 | 4.603989 | ATCATACATGTCTGCTGAGGAG | 57.396 | 45.455 | 0.00 | 0.00 | 0.00 | 3.69 |
8653 | 12263 | 5.121105 | CAAATCATACATGTCTGCTGAGGA | 58.879 | 41.667 | 0.00 | 0.00 | 0.00 | 3.71 |
8654 | 12264 | 4.261072 | GCAAATCATACATGTCTGCTGAGG | 60.261 | 45.833 | 0.00 | 0.00 | 0.00 | 3.86 |
8655 | 12265 | 4.575236 | AGCAAATCATACATGTCTGCTGAG | 59.425 | 41.667 | 0.00 | 0.00 | 37.00 | 3.35 |
8656 | 12266 | 4.520179 | AGCAAATCATACATGTCTGCTGA | 58.480 | 39.130 | 0.00 | 2.09 | 37.00 | 4.26 |
8657 | 12267 | 4.895224 | AGCAAATCATACATGTCTGCTG | 57.105 | 40.909 | 0.00 | 2.79 | 37.00 | 4.41 |
8658 | 12268 | 6.293698 | TCATAGCAAATCATACATGTCTGCT | 58.706 | 36.000 | 0.00 | 10.62 | 39.46 | 4.24 |
8659 | 12269 | 6.549912 | TCATAGCAAATCATACATGTCTGC | 57.450 | 37.500 | 0.00 | 3.33 | 0.00 | 4.26 |
8660 | 12270 | 9.961265 | AAAATCATAGCAAATCATACATGTCTG | 57.039 | 29.630 | 0.00 | 2.54 | 0.00 | 3.51 |
8736 | 12346 | 5.773680 | AGGCATCATCCCATTTAAATCTCTG | 59.226 | 40.000 | 0.00 | 0.00 | 0.00 | 3.35 |
8744 | 12354 | 4.523943 | GCATACAAGGCATCATCCCATTTA | 59.476 | 41.667 | 0.00 | 0.00 | 0.00 | 1.40 |
8769 | 12379 | 5.460646 | AGTTGGAAAAATGTCAGCGTAATG | 58.539 | 37.500 | 0.00 | 0.00 | 0.00 | 1.90 |
8793 | 12403 | 9.566432 | GAGGGAGTATTGATTATGATGAAAAGT | 57.434 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
8814 | 12424 | 5.878669 | GCTCTTTTATTTCTTTACGGAGGGA | 59.121 | 40.000 | 0.00 | 0.00 | 0.00 | 4.20 |
8815 | 12425 | 5.220605 | CGCTCTTTTATTTCTTTACGGAGGG | 60.221 | 44.000 | 0.00 | 0.00 | 0.00 | 4.30 |
8816 | 12426 | 5.350640 | ACGCTCTTTTATTTCTTTACGGAGG | 59.649 | 40.000 | 0.00 | 0.00 | 0.00 | 4.30 |
8817 | 12427 | 6.404712 | ACGCTCTTTTATTTCTTTACGGAG | 57.595 | 37.500 | 0.00 | 0.00 | 0.00 | 4.63 |
8818 | 12428 | 6.424509 | TGAACGCTCTTTTATTTCTTTACGGA | 59.575 | 34.615 | 0.00 | 0.00 | 0.00 | 4.69 |
8819 | 12429 | 6.595794 | TGAACGCTCTTTTATTTCTTTACGG | 58.404 | 36.000 | 0.00 | 0.00 | 0.00 | 4.02 |
8821 | 12431 | 9.479278 | GATCTGAACGCTCTTTTATTTCTTTAC | 57.521 | 33.333 | 0.00 | 0.00 | 0.00 | 2.01 |
8822 | 12432 | 9.214957 | TGATCTGAACGCTCTTTTATTTCTTTA | 57.785 | 29.630 | 0.00 | 0.00 | 0.00 | 1.85 |
8823 | 12433 | 8.017946 | GTGATCTGAACGCTCTTTTATTTCTTT | 58.982 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
8825 | 12435 | 6.876257 | AGTGATCTGAACGCTCTTTTATTTCT | 59.124 | 34.615 | 0.00 | 0.00 | 0.00 | 2.52 |
8826 | 12436 | 7.066374 | AGTGATCTGAACGCTCTTTTATTTC | 57.934 | 36.000 | 0.00 | 0.00 | 0.00 | 2.17 |
8827 | 12437 | 7.819900 | AGTAGTGATCTGAACGCTCTTTTATTT | 59.180 | 33.333 | 4.17 | 0.00 | 0.00 | 1.40 |
8828 | 12438 | 7.324178 | AGTAGTGATCTGAACGCTCTTTTATT | 58.676 | 34.615 | 4.17 | 0.00 | 0.00 | 1.40 |
8830 | 12440 | 6.268825 | AGTAGTGATCTGAACGCTCTTTTA | 57.731 | 37.500 | 4.17 | 0.00 | 0.00 | 1.52 |
8831 | 12441 | 5.140747 | AGTAGTGATCTGAACGCTCTTTT | 57.859 | 39.130 | 4.17 | 0.00 | 0.00 | 2.27 |
8833 | 12443 | 4.792521 | AAGTAGTGATCTGAACGCTCTT | 57.207 | 40.909 | 4.17 | 5.99 | 0.00 | 2.85 |
8835 | 12445 | 5.642686 | ACTAAAGTAGTGATCTGAACGCTC | 58.357 | 41.667 | 4.17 | 0.00 | 37.69 | 5.03 |
8836 | 12446 | 5.646577 | ACTAAAGTAGTGATCTGAACGCT | 57.353 | 39.130 | 6.26 | 6.26 | 37.69 | 5.07 |
8878 | 12488 | 9.496710 | TGTAATTGGTACTCCCTCTATAAAGAA | 57.503 | 33.333 | 0.00 | 0.00 | 33.46 | 2.52 |
8879 | 12489 | 8.921205 | GTGTAATTGGTACTCCCTCTATAAAGA | 58.079 | 37.037 | 0.00 | 0.00 | 33.46 | 2.52 |
8880 | 12490 | 8.925338 | AGTGTAATTGGTACTCCCTCTATAAAG | 58.075 | 37.037 | 0.00 | 0.00 | 33.46 | 1.85 |
8883 | 12493 | 7.359849 | ACAGTGTAATTGGTACTCCCTCTATA | 58.640 | 38.462 | 0.00 | 0.00 | 33.46 | 1.31 |
8885 | 12495 | 5.586877 | ACAGTGTAATTGGTACTCCCTCTA | 58.413 | 41.667 | 0.00 | 0.00 | 33.46 | 2.43 |
8887 | 12497 | 4.820894 | ACAGTGTAATTGGTACTCCCTC | 57.179 | 45.455 | 0.00 | 0.00 | 33.46 | 4.30 |
8888 | 12498 | 5.544948 | TGTTACAGTGTAATTGGTACTCCCT | 59.455 | 40.000 | 18.35 | 0.00 | 33.46 | 4.20 |
8889 | 12499 | 5.797051 | TGTTACAGTGTAATTGGTACTCCC | 58.203 | 41.667 | 18.35 | 2.99 | 33.46 | 4.30 |
8890 | 12500 | 7.064253 | GTGATGTTACAGTGTAATTGGTACTCC | 59.936 | 40.741 | 18.35 | 3.66 | 33.46 | 3.85 |
8891 | 12501 | 7.601130 | TGTGATGTTACAGTGTAATTGGTACTC | 59.399 | 37.037 | 18.35 | 4.33 | 33.46 | 2.59 |
8892 | 12502 | 7.446769 | TGTGATGTTACAGTGTAATTGGTACT | 58.553 | 34.615 | 18.35 | 0.00 | 33.46 | 2.73 |
8893 | 12503 | 7.661127 | TGTGATGTTACAGTGTAATTGGTAC | 57.339 | 36.000 | 18.35 | 13.69 | 0.00 | 3.34 |
8894 | 12504 | 7.899178 | CTGTGATGTTACAGTGTAATTGGTA | 57.101 | 36.000 | 18.35 | 4.60 | 42.38 | 3.25 |
8906 | 12516 | 7.067008 | TCGATGATCTCTAACTGTGATGTTACA | 59.933 | 37.037 | 0.00 | 0.00 | 0.00 | 2.41 |
8907 | 12517 | 7.377397 | GTCGATGATCTCTAACTGTGATGTTAC | 59.623 | 40.741 | 0.00 | 0.00 | 0.00 | 2.50 |
8933 | 13938 | 2.001812 | AGTGCTGCGAACTGTATCAG | 57.998 | 50.000 | 0.00 | 0.00 | 37.52 | 2.90 |
8937 | 13942 | 1.883926 | TCTGTAGTGCTGCGAACTGTA | 59.116 | 47.619 | 3.14 | 0.00 | 0.00 | 2.74 |
8948 | 13953 | 1.807573 | GCGTCCTGCTCTGTAGTGC | 60.808 | 63.158 | 0.00 | 0.00 | 41.73 | 4.40 |
8970 | 13975 | 2.289002 | CCATGCTTAGATGGAACGCTTC | 59.711 | 50.000 | 0.00 | 0.00 | 45.24 | 3.86 |
8978 | 13983 | 0.179048 | TGACCGCCATGCTTAGATGG | 60.179 | 55.000 | 0.00 | 0.00 | 45.20 | 3.51 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.