Multiple sequence alignment - TraesCS1B01G218700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G218700 chr1B 100.000 3741 0 0 1 3741 396116006 396119746 0.000000e+00 6909
1 TraesCS1B01G218700 chr1B 96.667 330 10 1 284 613 114916024 114916352 7.060000e-152 547
2 TraesCS1B01G218700 chr1B 96.096 333 13 0 289 621 162352603 162352935 9.140000e-151 544
3 TraesCS1B01G218700 chr1D 91.959 2537 100 34 615 3089 294404970 294407464 0.000000e+00 3459
4 TraesCS1B01G218700 chr1D 83.130 492 73 6 3249 3731 463981768 463982258 1.230000e-119 440
5 TraesCS1B01G218700 chr1D 89.865 296 20 6 1 292 294404678 294404967 4.560000e-99 372
6 TraesCS1B01G218700 chr1A 92.521 1551 57 16 1570 3089 367381922 367383444 0.000000e+00 2167
7 TraesCS1B01G218700 chr1A 94.677 883 29 7 615 1485 367381053 367381929 0.000000e+00 1354
8 TraesCS1B01G218700 chr1A 91.525 295 22 1 1 292 367380756 367381050 1.620000e-108 403
9 TraesCS1B01G218700 chr5B 97.531 324 8 0 290 613 688021986 688022309 4.220000e-154 555
10 TraesCS1B01G218700 chr5B 81.047 554 89 8 3195 3733 118424200 118423648 9.600000e-116 427
11 TraesCS1B01G218700 chr4B 97.531 324 8 0 290 613 579401576 579401253 4.220000e-154 555
12 TraesCS1B01G218700 chr4B 97.516 322 8 0 292 613 653733487 653733808 5.460000e-153 551
13 TraesCS1B01G218700 chr2B 97.531 324 8 0 290 613 783866278 783865955 4.220000e-154 555
14 TraesCS1B01G218700 chr3A 97.239 326 9 0 288 613 580643691 580643366 1.520000e-153 553
15 TraesCS1B01G218700 chr3A 80.895 581 90 10 3172 3732 1646417 1646996 4.440000e-119 438
16 TraesCS1B01G218700 chr7A 97.231 325 9 0 289 613 726896108 726896432 5.460000e-153 551
17 TraesCS1B01G218700 chr4A 97.516 322 8 0 292 613 249545111 249545432 5.460000e-153 551
18 TraesCS1B01G218700 chr5D 81.753 559 95 7 3179 3732 523941398 523941954 9.470000e-126 460
19 TraesCS1B01G218700 chr5D 81.720 558 97 5 3179 3732 523995231 523995787 9.470000e-126 460
20 TraesCS1B01G218700 chr5D 82.731 498 81 5 3248 3741 515237624 515237128 4.440000e-119 438
21 TraesCS1B01G218700 chr2D 81.469 572 92 7 3183 3741 650470475 650469905 1.220000e-124 457
22 TraesCS1B01G218700 chr2D 75.532 282 59 8 1 274 136610083 136610362 3.030000e-26 130
23 TraesCS1B01G218700 chr2A 82.422 512 81 6 3233 3741 526281068 526281573 4.440000e-119 438
24 TraesCS1B01G218700 chr4D 82.677 508 71 9 3235 3741 312581807 312582298 5.740000e-118 435


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G218700 chr1B 396116006 396119746 3740 False 6909.0 6909 100.000000 1 3741 1 chr1B.!!$F3 3740
1 TraesCS1B01G218700 chr1D 294404678 294407464 2786 False 1915.5 3459 90.912000 1 3089 2 chr1D.!!$F2 3088
2 TraesCS1B01G218700 chr1A 367380756 367383444 2688 False 1308.0 2167 92.907667 1 3089 3 chr1A.!!$F1 3088
3 TraesCS1B01G218700 chr5B 118423648 118424200 552 True 427.0 427 81.047000 3195 3733 1 chr5B.!!$R1 538
4 TraesCS1B01G218700 chr3A 1646417 1646996 579 False 438.0 438 80.895000 3172 3732 1 chr3A.!!$F1 560
5 TraesCS1B01G218700 chr5D 523941398 523941954 556 False 460.0 460 81.753000 3179 3732 1 chr5D.!!$F1 553
6 TraesCS1B01G218700 chr5D 523995231 523995787 556 False 460.0 460 81.720000 3179 3732 1 chr5D.!!$F2 553
7 TraesCS1B01G218700 chr2D 650469905 650470475 570 True 457.0 457 81.469000 3183 3741 1 chr2D.!!$R1 558
8 TraesCS1B01G218700 chr2A 526281068 526281573 505 False 438.0 438 82.422000 3233 3741 1 chr2A.!!$F1 508

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
332 336 0.034574 CGGTCATGAATGGGTTGGGA 60.035 55.0 0.0 0.0 0.00 4.37 F
493 497 0.035317 TGTGAGCATGACTGGTGGTC 59.965 55.0 0.0 0.0 44.70 4.02 F
1387 1419 0.040603 CGCCCGAGTCCGACTATAAC 60.041 60.0 0.0 0.0 38.22 1.89 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1800 1845 0.035152 GGATGATGTCCACCTGCACA 60.035 55.0 0.00 0.0 46.96 4.57 R
2223 2276 0.394192 TGAGCTCACCTCACCAAGTG 59.606 55.0 13.74 0.0 45.44 3.16 R
3159 3278 0.037605 CGTGCTTTAAGAGGTCCGGT 60.038 55.0 0.00 0.0 0.00 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
89 93 6.238320 GCAAAACAAATTACATGGCTTTGTCA 60.238 34.615 17.40 0.00 41.03 3.58
136 140 2.033049 GCTAGTAGCCGTCAGATCGAAA 59.967 50.000 11.33 0.00 34.48 3.46
164 168 2.093288 GGATGAGGACAGTCATTGCTGA 60.093 50.000 12.89 0.00 37.29 4.26
224 228 2.584391 AACGCCTCCTGTGACTCCC 61.584 63.158 0.00 0.00 0.00 4.30
225 229 2.997315 CGCCTCCTGTGACTCCCA 60.997 66.667 0.00 0.00 0.00 4.37
230 234 1.459348 TCCTGTGACTCCCAGCACA 60.459 57.895 0.00 0.00 42.25 4.57
232 236 1.302033 CTGTGACTCCCAGCACACC 60.302 63.158 0.00 0.00 39.86 4.16
235 239 4.394712 GACTCCCAGCACACCGGG 62.395 72.222 6.32 0.00 44.60 5.73
240 244 4.704833 CCAGCACACCGGGACAGG 62.705 72.222 6.32 0.00 37.30 4.00
276 280 8.378565 TCTAGTTCTTCAGAAATGATGGACTTT 58.621 33.333 9.56 0.00 34.73 2.66
292 296 3.274288 GACTTTGGGCCTGACATCTTAG 58.726 50.000 4.53 0.00 0.00 2.18
293 297 2.025887 ACTTTGGGCCTGACATCTTAGG 60.026 50.000 4.53 0.00 37.14 2.69
294 298 0.918983 TTGGGCCTGACATCTTAGGG 59.081 55.000 4.53 0.00 34.58 3.53
295 299 0.253160 TGGGCCTGACATCTTAGGGT 60.253 55.000 4.53 0.00 34.58 4.34
296 300 0.181350 GGGCCTGACATCTTAGGGTG 59.819 60.000 0.84 0.00 34.58 4.61
297 301 0.464554 GGCCTGACATCTTAGGGTGC 60.465 60.000 0.00 0.00 34.58 5.01
298 302 0.811616 GCCTGACATCTTAGGGTGCG 60.812 60.000 0.00 0.00 34.58 5.34
299 303 0.537188 CCTGACATCTTAGGGTGCGT 59.463 55.000 0.00 0.00 0.00 5.24
300 304 1.066143 CCTGACATCTTAGGGTGCGTT 60.066 52.381 0.00 0.00 0.00 4.84
301 305 2.615493 CCTGACATCTTAGGGTGCGTTT 60.615 50.000 0.00 0.00 0.00 3.60
302 306 2.416547 CTGACATCTTAGGGTGCGTTTG 59.583 50.000 0.00 0.00 0.00 2.93
303 307 1.737793 GACATCTTAGGGTGCGTTTGG 59.262 52.381 0.00 0.00 0.00 3.28
304 308 1.073284 ACATCTTAGGGTGCGTTTGGT 59.927 47.619 0.00 0.00 0.00 3.67
305 309 1.737793 CATCTTAGGGTGCGTTTGGTC 59.262 52.381 0.00 0.00 0.00 4.02
306 310 0.320073 TCTTAGGGTGCGTTTGGTCG 60.320 55.000 0.00 0.00 0.00 4.79
323 327 3.924507 GCAAGGGCGGTCATGAAT 58.075 55.556 0.00 0.00 0.00 2.57
324 328 1.434696 GCAAGGGCGGTCATGAATG 59.565 57.895 0.00 0.00 0.00 2.67
325 329 2.008268 GCAAGGGCGGTCATGAATGG 62.008 60.000 0.00 0.00 0.00 3.16
326 330 1.076777 AAGGGCGGTCATGAATGGG 60.077 57.895 0.00 0.00 0.00 4.00
327 331 1.863155 AAGGGCGGTCATGAATGGGT 61.863 55.000 0.00 0.00 0.00 4.51
328 332 1.379843 GGGCGGTCATGAATGGGTT 60.380 57.895 0.00 0.00 0.00 4.11
329 333 1.666209 GGGCGGTCATGAATGGGTTG 61.666 60.000 0.00 0.00 0.00 3.77
330 334 1.666209 GGCGGTCATGAATGGGTTGG 61.666 60.000 0.00 0.00 0.00 3.77
331 335 1.666209 GCGGTCATGAATGGGTTGGG 61.666 60.000 0.00 0.00 0.00 4.12
332 336 0.034574 CGGTCATGAATGGGTTGGGA 60.035 55.000 0.00 0.00 0.00 4.37
333 337 1.410083 CGGTCATGAATGGGTTGGGAT 60.410 52.381 0.00 0.00 0.00 3.85
334 338 2.310538 GGTCATGAATGGGTTGGGATC 58.689 52.381 0.00 0.00 0.00 3.36
335 339 1.949525 GTCATGAATGGGTTGGGATCG 59.050 52.381 0.00 0.00 0.00 3.69
336 340 1.563879 TCATGAATGGGTTGGGATCGT 59.436 47.619 0.00 0.00 0.00 3.73
337 341 2.025416 TCATGAATGGGTTGGGATCGTT 60.025 45.455 0.00 0.00 0.00 3.85
338 342 2.122783 TGAATGGGTTGGGATCGTTC 57.877 50.000 0.00 0.00 0.00 3.95
339 343 1.352687 TGAATGGGTTGGGATCGTTCA 59.647 47.619 0.00 0.00 35.03 3.18
340 344 2.017049 GAATGGGTTGGGATCGTTCAG 58.983 52.381 0.00 0.00 0.00 3.02
341 345 1.285280 ATGGGTTGGGATCGTTCAGA 58.715 50.000 0.00 0.00 0.00 3.27
342 346 1.060729 TGGGTTGGGATCGTTCAGAA 58.939 50.000 0.00 0.00 0.00 3.02
343 347 1.422024 TGGGTTGGGATCGTTCAGAAA 59.578 47.619 0.00 0.00 0.00 2.52
344 348 2.158593 TGGGTTGGGATCGTTCAGAAAA 60.159 45.455 0.00 0.00 0.00 2.29
345 349 3.089284 GGGTTGGGATCGTTCAGAAAAT 58.911 45.455 0.00 0.00 0.00 1.82
346 350 4.263550 TGGGTTGGGATCGTTCAGAAAATA 60.264 41.667 0.00 0.00 0.00 1.40
347 351 4.335594 GGGTTGGGATCGTTCAGAAAATAG 59.664 45.833 0.00 0.00 0.00 1.73
348 352 5.183228 GGTTGGGATCGTTCAGAAAATAGA 58.817 41.667 0.00 0.00 0.00 1.98
349 353 5.064834 GGTTGGGATCGTTCAGAAAATAGAC 59.935 44.000 0.00 0.00 0.00 2.59
350 354 5.414789 TGGGATCGTTCAGAAAATAGACA 57.585 39.130 0.00 0.00 0.00 3.41
351 355 5.989477 TGGGATCGTTCAGAAAATAGACAT 58.011 37.500 0.00 0.00 0.00 3.06
352 356 5.817296 TGGGATCGTTCAGAAAATAGACATG 59.183 40.000 0.00 0.00 0.00 3.21
353 357 5.817816 GGGATCGTTCAGAAAATAGACATGT 59.182 40.000 0.00 0.00 0.00 3.21
354 358 6.316390 GGGATCGTTCAGAAAATAGACATGTT 59.684 38.462 0.00 0.00 0.00 2.71
355 359 7.148239 GGGATCGTTCAGAAAATAGACATGTTT 60.148 37.037 0.00 0.00 0.00 2.83
356 360 7.693951 GGATCGTTCAGAAAATAGACATGTTTG 59.306 37.037 0.00 0.00 0.00 2.93
357 361 6.898041 TCGTTCAGAAAATAGACATGTTTGG 58.102 36.000 0.00 0.00 0.00 3.28
358 362 6.485313 TCGTTCAGAAAATAGACATGTTTGGT 59.515 34.615 0.00 0.00 0.00 3.67
359 363 7.012894 TCGTTCAGAAAATAGACATGTTTGGTT 59.987 33.333 0.00 0.00 0.00 3.67
360 364 8.286800 CGTTCAGAAAATAGACATGTTTGGTTA 58.713 33.333 0.00 0.00 0.00 2.85
368 372 9.855021 AAATAGACATGTTTGGTTATAAAGCAC 57.145 29.630 0.00 0.00 38.84 4.40
369 373 6.892658 AGACATGTTTGGTTATAAAGCACA 57.107 33.333 0.00 0.00 38.84 4.57
370 374 7.466746 AGACATGTTTGGTTATAAAGCACAT 57.533 32.000 0.00 0.00 38.84 3.21
371 375 7.315142 AGACATGTTTGGTTATAAAGCACATG 58.685 34.615 18.14 18.14 43.36 3.21
372 376 7.176515 AGACATGTTTGGTTATAAAGCACATGA 59.823 33.333 22.73 0.00 41.79 3.07
373 377 7.665690 ACATGTTTGGTTATAAAGCACATGAA 58.334 30.769 22.73 1.35 41.79 2.57
374 378 8.313292 ACATGTTTGGTTATAAAGCACATGAAT 58.687 29.630 22.73 8.91 41.79 2.57
375 379 8.597227 CATGTTTGGTTATAAAGCACATGAATG 58.403 33.333 16.31 0.00 41.79 2.67
376 380 7.095910 TGTTTGGTTATAAAGCACATGAATGG 58.904 34.615 0.00 0.00 38.84 3.16
377 381 6.849085 TTGGTTATAAAGCACATGAATGGT 57.151 33.333 0.00 0.00 38.84 3.55
378 382 6.849085 TGGTTATAAAGCACATGAATGGTT 57.151 33.333 0.00 0.00 41.95 3.67
379 383 6.862209 TGGTTATAAAGCACATGAATGGTTC 58.138 36.000 0.00 0.00 39.32 3.62
380 384 5.971202 GGTTATAAAGCACATGAATGGTTCG 59.029 40.000 0.00 0.00 39.32 3.95
381 385 6.183360 GGTTATAAAGCACATGAATGGTTCGA 60.183 38.462 0.00 0.00 39.32 3.71
382 386 3.837213 AAAGCACATGAATGGTTCGAG 57.163 42.857 0.00 0.00 39.32 4.04
383 387 1.089920 AGCACATGAATGGTTCGAGC 58.910 50.000 0.00 0.00 0.00 5.03
384 388 1.089920 GCACATGAATGGTTCGAGCT 58.910 50.000 0.00 0.00 0.00 4.09
385 389 2.093500 AGCACATGAATGGTTCGAGCTA 60.093 45.455 0.00 0.00 0.00 3.32
386 390 2.677836 GCACATGAATGGTTCGAGCTAA 59.322 45.455 0.00 0.00 0.00 3.09
387 391 3.126858 GCACATGAATGGTTCGAGCTAAA 59.873 43.478 0.00 0.00 0.00 1.85
388 392 4.379394 GCACATGAATGGTTCGAGCTAAAA 60.379 41.667 0.00 0.00 0.00 1.52
389 393 5.698832 CACATGAATGGTTCGAGCTAAAAA 58.301 37.500 0.00 0.00 0.00 1.94
412 416 9.485206 AAAAATTAGAATATGCCATGAAGATGC 57.515 29.630 0.00 0.00 0.00 3.91
413 417 8.418597 AAATTAGAATATGCCATGAAGATGCT 57.581 30.769 0.00 0.00 0.00 3.79
414 418 6.812879 TTAGAATATGCCATGAAGATGCTG 57.187 37.500 0.00 0.00 0.00 4.41
415 419 4.981812 AGAATATGCCATGAAGATGCTGA 58.018 39.130 0.00 0.00 0.00 4.26
416 420 5.382616 AGAATATGCCATGAAGATGCTGAA 58.617 37.500 0.00 0.00 0.00 3.02
417 421 5.241064 AGAATATGCCATGAAGATGCTGAAC 59.759 40.000 0.00 0.00 0.00 3.18
418 422 1.466856 TGCCATGAAGATGCTGAACC 58.533 50.000 0.00 0.00 0.00 3.62
419 423 0.379669 GCCATGAAGATGCTGAACCG 59.620 55.000 0.00 0.00 0.00 4.44
420 424 1.742761 CCATGAAGATGCTGAACCGT 58.257 50.000 0.00 0.00 0.00 4.83
421 425 2.086869 CCATGAAGATGCTGAACCGTT 58.913 47.619 0.00 0.00 0.00 4.44
422 426 2.096496 CCATGAAGATGCTGAACCGTTC 59.904 50.000 4.18 4.18 0.00 3.95
423 427 1.808411 TGAAGATGCTGAACCGTTCC 58.192 50.000 8.80 0.00 0.00 3.62
424 428 1.071542 TGAAGATGCTGAACCGTTCCA 59.928 47.619 8.80 1.07 0.00 3.53
425 429 1.464997 GAAGATGCTGAACCGTTCCAC 59.535 52.381 8.80 1.68 0.00 4.02
426 430 0.321653 AGATGCTGAACCGTTCCACC 60.322 55.000 8.80 0.00 0.00 4.61
427 431 1.303317 ATGCTGAACCGTTCCACCC 60.303 57.895 8.80 0.00 0.00 4.61
428 432 2.063015 ATGCTGAACCGTTCCACCCA 62.063 55.000 8.80 1.59 0.00 4.51
429 433 1.527380 GCTGAACCGTTCCACCCAA 60.527 57.895 8.80 0.00 0.00 4.12
430 434 1.792118 GCTGAACCGTTCCACCCAAC 61.792 60.000 8.80 0.00 0.00 3.77
431 435 1.152922 TGAACCGTTCCACCCAACC 60.153 57.895 8.80 0.00 0.00 3.77
432 436 1.152922 GAACCGTTCCACCCAACCA 60.153 57.895 0.00 0.00 0.00 3.67
433 437 0.752376 GAACCGTTCCACCCAACCAA 60.752 55.000 0.00 0.00 0.00 3.67
434 438 0.324460 AACCGTTCCACCCAACCAAA 60.324 50.000 0.00 0.00 0.00 3.28
435 439 0.105913 ACCGTTCCACCCAACCAAAT 60.106 50.000 0.00 0.00 0.00 2.32
436 440 0.601057 CCGTTCCACCCAACCAAATC 59.399 55.000 0.00 0.00 0.00 2.17
437 441 0.239879 CGTTCCACCCAACCAAATCG 59.760 55.000 0.00 0.00 0.00 3.34
438 442 0.601057 GTTCCACCCAACCAAATCGG 59.399 55.000 0.00 0.00 42.50 4.18
451 455 3.694734 CCAAATCGGTCGAATCAAATGG 58.305 45.455 0.00 0.00 0.00 3.16
452 456 3.108144 CAAATCGGTCGAATCAAATGGC 58.892 45.455 0.00 0.00 0.00 4.40
453 457 1.308998 ATCGGTCGAATCAAATGGCC 58.691 50.000 0.00 0.00 0.00 5.36
454 458 0.035915 TCGGTCGAATCAAATGGCCA 60.036 50.000 8.56 8.56 0.00 5.36
455 459 0.098728 CGGTCGAATCAAATGGCCAC 59.901 55.000 8.16 0.00 0.00 5.01
456 460 0.455815 GGTCGAATCAAATGGCCACC 59.544 55.000 8.16 0.00 0.00 4.61
457 461 0.455815 GTCGAATCAAATGGCCACCC 59.544 55.000 8.16 0.00 0.00 4.61
458 462 0.331278 TCGAATCAAATGGCCACCCT 59.669 50.000 8.16 0.00 0.00 4.34
459 463 1.185315 CGAATCAAATGGCCACCCTT 58.815 50.000 8.16 0.00 0.00 3.95
460 464 1.550072 CGAATCAAATGGCCACCCTTT 59.450 47.619 8.16 1.16 0.00 3.11
461 465 2.674747 CGAATCAAATGGCCACCCTTTG 60.675 50.000 19.88 19.88 33.89 2.77
462 466 0.614812 ATCAAATGGCCACCCTTTGC 59.385 50.000 20.77 0.00 33.24 3.68
463 467 0.762082 TCAAATGGCCACCCTTTGCA 60.762 50.000 20.77 10.39 33.24 4.08
464 468 0.325602 CAAATGGCCACCCTTTGCAT 59.674 50.000 8.16 0.00 0.00 3.96
465 469 0.325602 AAATGGCCACCCTTTGCATG 59.674 50.000 8.16 0.00 0.00 4.06
466 470 2.187896 AATGGCCACCCTTTGCATGC 62.188 55.000 8.16 11.82 0.00 4.06
467 471 3.312718 GGCCACCCTTTGCATGCA 61.313 61.111 18.46 18.46 0.00 3.96
468 472 2.662070 GGCCACCCTTTGCATGCAT 61.662 57.895 23.37 2.36 0.00 3.96
469 473 1.448893 GCCACCCTTTGCATGCATG 60.449 57.895 23.37 22.70 0.00 4.06
470 474 1.890625 GCCACCCTTTGCATGCATGA 61.891 55.000 30.64 12.55 0.00 3.07
471 475 0.108520 CCACCCTTTGCATGCATGAC 60.109 55.000 30.64 20.41 0.00 3.06
472 476 0.892755 CACCCTTTGCATGCATGACT 59.107 50.000 30.64 0.05 0.00 3.41
473 477 2.093890 CACCCTTTGCATGCATGACTA 58.906 47.619 30.64 14.85 0.00 2.59
474 478 2.691526 CACCCTTTGCATGCATGACTAT 59.308 45.455 30.64 3.00 0.00 2.12
475 479 2.691526 ACCCTTTGCATGCATGACTATG 59.308 45.455 30.64 17.48 37.36 2.23
476 480 2.691526 CCCTTTGCATGCATGACTATGT 59.308 45.455 30.64 0.00 36.65 2.29
477 481 3.490249 CCCTTTGCATGCATGACTATGTG 60.490 47.826 30.64 10.85 36.65 3.21
478 482 3.379057 CCTTTGCATGCATGACTATGTGA 59.621 43.478 30.64 0.00 36.65 3.58
479 483 4.497507 CCTTTGCATGCATGACTATGTGAG 60.498 45.833 30.64 13.72 36.65 3.51
480 484 1.944709 TGCATGCATGACTATGTGAGC 59.055 47.619 30.64 10.98 36.65 4.26
481 485 1.944709 GCATGCATGACTATGTGAGCA 59.055 47.619 30.64 0.00 36.65 4.26
482 486 2.552743 GCATGCATGACTATGTGAGCAT 59.447 45.455 30.64 0.00 42.82 3.79
484 488 3.547054 TGCATGACTATGTGAGCATGA 57.453 42.857 0.00 0.00 39.82 3.07
485 489 3.200483 TGCATGACTATGTGAGCATGAC 58.800 45.455 0.00 0.00 39.82 3.06
486 490 3.118519 TGCATGACTATGTGAGCATGACT 60.119 43.478 0.00 0.00 39.82 3.41
487 491 3.247886 GCATGACTATGTGAGCATGACTG 59.752 47.826 0.00 0.00 39.82 3.51
488 492 3.531934 TGACTATGTGAGCATGACTGG 57.468 47.619 0.00 0.00 36.58 4.00
489 493 2.833943 TGACTATGTGAGCATGACTGGT 59.166 45.455 0.00 0.00 36.58 4.00
490 494 3.193263 GACTATGTGAGCATGACTGGTG 58.807 50.000 0.00 0.00 36.58 4.17
491 495 2.093288 ACTATGTGAGCATGACTGGTGG 60.093 50.000 0.00 0.00 36.58 4.61
492 496 0.694771 ATGTGAGCATGACTGGTGGT 59.305 50.000 0.00 0.00 33.37 4.16
493 497 0.035317 TGTGAGCATGACTGGTGGTC 59.965 55.000 0.00 0.00 44.70 4.02
494 498 0.674895 GTGAGCATGACTGGTGGTCC 60.675 60.000 0.00 0.00 43.89 4.46
495 499 1.078143 GAGCATGACTGGTGGTCCC 60.078 63.158 0.00 0.00 43.89 4.46
496 500 2.436646 GCATGACTGGTGGTCCCG 60.437 66.667 0.00 0.00 43.89 5.14
497 501 3.068881 CATGACTGGTGGTCCCGT 58.931 61.111 0.00 0.00 43.89 5.28
498 502 1.079127 CATGACTGGTGGTCCCGTC 60.079 63.158 0.00 2.67 44.58 4.79
499 503 2.291043 ATGACTGGTGGTCCCGTCC 61.291 63.158 6.41 0.00 43.99 4.79
500 504 2.603776 GACTGGTGGTCCCGTCCT 60.604 66.667 0.00 0.00 40.51 3.85
501 505 1.304713 GACTGGTGGTCCCGTCCTA 60.305 63.158 0.00 0.00 40.51 2.94
502 506 0.901580 GACTGGTGGTCCCGTCCTAA 60.902 60.000 0.00 0.00 40.51 2.69
503 507 0.472352 ACTGGTGGTCCCGTCCTAAA 60.472 55.000 0.00 0.00 35.15 1.85
504 508 0.909623 CTGGTGGTCCCGTCCTAAAT 59.090 55.000 0.00 0.00 35.15 1.40
505 509 2.112998 CTGGTGGTCCCGTCCTAAATA 58.887 52.381 0.00 0.00 35.15 1.40
506 510 2.502538 CTGGTGGTCCCGTCCTAAATAA 59.497 50.000 0.00 0.00 35.15 1.40
507 511 3.116959 TGGTGGTCCCGTCCTAAATAAT 58.883 45.455 0.00 0.00 35.15 1.28
508 512 3.524380 TGGTGGTCCCGTCCTAAATAATT 59.476 43.478 0.00 0.00 35.15 1.40
509 513 4.720773 TGGTGGTCCCGTCCTAAATAATTA 59.279 41.667 0.00 0.00 35.15 1.40
510 514 5.163280 TGGTGGTCCCGTCCTAAATAATTAG 60.163 44.000 0.00 0.00 36.05 1.73
511 515 4.753610 GTGGTCCCGTCCTAAATAATTAGC 59.246 45.833 0.00 0.00 37.74 3.09
512 516 4.657039 TGGTCCCGTCCTAAATAATTAGCT 59.343 41.667 0.00 0.00 37.74 3.32
513 517 5.221581 TGGTCCCGTCCTAAATAATTAGCTC 60.222 44.000 0.00 0.00 37.74 4.09
514 518 5.221581 GGTCCCGTCCTAAATAATTAGCTCA 60.222 44.000 0.00 0.00 37.74 4.26
515 519 5.695363 GTCCCGTCCTAAATAATTAGCTCAC 59.305 44.000 0.00 0.00 37.74 3.51
516 520 4.995487 CCCGTCCTAAATAATTAGCTCACC 59.005 45.833 0.00 0.00 37.74 4.02
517 521 5.454187 CCCGTCCTAAATAATTAGCTCACCA 60.454 44.000 0.00 0.00 37.74 4.17
518 522 5.465724 CCGTCCTAAATAATTAGCTCACCAC 59.534 44.000 0.00 0.00 37.74 4.16
519 523 6.281405 CGTCCTAAATAATTAGCTCACCACT 58.719 40.000 0.00 0.00 37.74 4.00
520 524 6.761714 CGTCCTAAATAATTAGCTCACCACTT 59.238 38.462 0.00 0.00 37.74 3.16
521 525 7.924412 CGTCCTAAATAATTAGCTCACCACTTA 59.076 37.037 0.00 0.00 37.74 2.24
522 526 9.780186 GTCCTAAATAATTAGCTCACCACTTAT 57.220 33.333 0.00 0.00 37.74 1.73
529 533 7.736447 AATTAGCTCACCACTTATATTCAGC 57.264 36.000 0.00 0.00 0.00 4.26
530 534 4.078639 AGCTCACCACTTATATTCAGCC 57.921 45.455 0.00 0.00 0.00 4.85
531 535 3.455910 AGCTCACCACTTATATTCAGCCA 59.544 43.478 0.00 0.00 0.00 4.75
532 536 4.080356 AGCTCACCACTTATATTCAGCCAA 60.080 41.667 0.00 0.00 0.00 4.52
533 537 4.640201 GCTCACCACTTATATTCAGCCAAA 59.360 41.667 0.00 0.00 0.00 3.28
534 538 5.449177 GCTCACCACTTATATTCAGCCAAAC 60.449 44.000 0.00 0.00 0.00 2.93
535 539 5.565509 TCACCACTTATATTCAGCCAAACA 58.434 37.500 0.00 0.00 0.00 2.83
536 540 5.414454 TCACCACTTATATTCAGCCAAACAC 59.586 40.000 0.00 0.00 0.00 3.32
537 541 5.182950 CACCACTTATATTCAGCCAAACACA 59.817 40.000 0.00 0.00 0.00 3.72
538 542 5.951747 ACCACTTATATTCAGCCAAACACAT 59.048 36.000 0.00 0.00 0.00 3.21
539 543 6.127647 ACCACTTATATTCAGCCAAACACATG 60.128 38.462 0.00 0.00 0.00 3.21
540 544 6.095300 CCACTTATATTCAGCCAAACACATGA 59.905 38.462 0.00 0.00 0.00 3.07
541 545 7.362834 CCACTTATATTCAGCCAAACACATGAA 60.363 37.037 0.00 0.00 36.22 2.57
542 546 8.192774 CACTTATATTCAGCCAAACACATGAAT 58.807 33.333 0.00 4.83 43.08 2.57
543 547 8.752187 ACTTATATTCAGCCAAACACATGAATT 58.248 29.630 0.00 0.00 41.38 2.17
544 548 8.929827 TTATATTCAGCCAAACACATGAATTG 57.070 30.769 0.00 1.27 41.38 2.32
545 549 4.933505 TTCAGCCAAACACATGAATTGA 57.066 36.364 0.00 0.00 0.00 2.57
546 550 4.933505 TCAGCCAAACACATGAATTGAA 57.066 36.364 0.00 0.00 0.00 2.69
547 551 5.471556 TCAGCCAAACACATGAATTGAAT 57.528 34.783 0.00 0.00 0.00 2.57
548 552 5.231702 TCAGCCAAACACATGAATTGAATG 58.768 37.500 0.00 4.33 0.00 2.67
549 553 5.010820 TCAGCCAAACACATGAATTGAATGA 59.989 36.000 0.00 6.36 0.00 2.57
550 554 5.872617 CAGCCAAACACATGAATTGAATGAT 59.127 36.000 0.00 0.00 0.00 2.45
551 555 6.370442 CAGCCAAACACATGAATTGAATGATT 59.630 34.615 0.00 0.00 0.00 2.57
552 556 6.592607 AGCCAAACACATGAATTGAATGATTC 59.407 34.615 0.00 0.00 36.73 2.52
553 557 6.369340 GCCAAACACATGAATTGAATGATTCA 59.631 34.615 3.29 3.29 46.64 2.57
582 586 4.339872 AAAAATTAAACGGTCCCAACCC 57.660 40.909 0.00 0.00 43.21 4.11
583 587 2.679429 AATTAAACGGTCCCAACCCA 57.321 45.000 0.00 0.00 43.21 4.51
584 588 2.911552 ATTAAACGGTCCCAACCCAT 57.088 45.000 0.00 0.00 43.21 4.00
585 589 2.679429 TTAAACGGTCCCAACCCATT 57.321 45.000 0.00 0.00 43.21 3.16
586 590 2.679429 TAAACGGTCCCAACCCATTT 57.321 45.000 0.00 0.00 43.21 2.32
587 591 2.679429 AAACGGTCCCAACCCATTTA 57.321 45.000 0.00 0.00 43.21 1.40
588 592 2.911552 AACGGTCCCAACCCATTTAT 57.088 45.000 0.00 0.00 43.21 1.40
589 593 4.319037 AAACGGTCCCAACCCATTTATA 57.681 40.909 0.00 0.00 43.21 0.98
590 594 3.286329 ACGGTCCCAACCCATTTATAC 57.714 47.619 0.00 0.00 43.21 1.47
591 595 2.215196 CGGTCCCAACCCATTTATACG 58.785 52.381 0.00 0.00 43.21 3.06
592 596 2.158928 CGGTCCCAACCCATTTATACGA 60.159 50.000 0.00 0.00 43.21 3.43
593 597 3.208594 GGTCCCAACCCATTTATACGAC 58.791 50.000 0.00 0.00 39.93 4.34
594 598 3.370739 GGTCCCAACCCATTTATACGACA 60.371 47.826 0.00 0.00 39.93 4.35
595 599 3.624410 GTCCCAACCCATTTATACGACAC 59.376 47.826 0.00 0.00 0.00 3.67
596 600 2.610374 CCCAACCCATTTATACGACACG 59.390 50.000 0.00 0.00 0.00 4.49
597 601 3.264104 CCAACCCATTTATACGACACGT 58.736 45.455 1.91 1.91 44.35 4.49
598 602 3.685756 CCAACCCATTTATACGACACGTT 59.314 43.478 1.53 0.00 41.54 3.99
599 603 4.201744 CCAACCCATTTATACGACACGTTC 60.202 45.833 1.53 0.00 41.54 3.95
600 604 4.191033 ACCCATTTATACGACACGTTCA 57.809 40.909 1.53 0.00 41.54 3.18
601 605 4.567971 ACCCATTTATACGACACGTTCAA 58.432 39.130 1.53 0.00 41.54 2.69
602 606 4.389687 ACCCATTTATACGACACGTTCAAC 59.610 41.667 1.53 0.00 41.54 3.18
603 607 4.201744 CCCATTTATACGACACGTTCAACC 60.202 45.833 1.53 0.00 41.54 3.77
604 608 4.389382 CCATTTATACGACACGTTCAACCA 59.611 41.667 1.53 0.00 41.54 3.67
605 609 5.107026 CCATTTATACGACACGTTCAACCAA 60.107 40.000 1.53 0.00 41.54 3.67
606 610 5.980698 TTTATACGACACGTTCAACCAAA 57.019 34.783 1.53 0.00 41.54 3.28
607 611 3.865224 ATACGACACGTTCAACCAAAC 57.135 42.857 1.53 0.00 41.54 2.93
667 671 2.125269 CGATGGGGTCGGGTGTTC 60.125 66.667 0.00 0.00 46.47 3.18
801 820 2.713531 ATCAAAACCAGTGGCGGCCT 62.714 55.000 21.46 0.00 0.00 5.19
997 1022 2.937136 TTCCCGGTTTCCCTCCCC 60.937 66.667 0.00 0.00 0.00 4.81
1009 1034 2.187946 CTCCCCTGATGGACACGC 59.812 66.667 0.00 0.00 35.39 5.34
1269 1294 2.124653 ATCGAGGTCGCCGAGTCT 60.125 61.111 0.00 0.00 39.55 3.24
1350 1375 1.732941 TTACTGCATTGCCACCTACG 58.267 50.000 6.12 0.00 0.00 3.51
1385 1417 1.146930 ACGCCCGAGTCCGACTATA 59.853 57.895 0.00 0.00 38.22 1.31
1386 1418 0.464373 ACGCCCGAGTCCGACTATAA 60.464 55.000 0.00 0.00 38.22 0.98
1387 1419 0.040603 CGCCCGAGTCCGACTATAAC 60.041 60.000 0.00 0.00 38.22 1.89
1388 1420 1.316651 GCCCGAGTCCGACTATAACT 58.683 55.000 0.00 0.00 38.22 2.24
1389 1421 2.498167 GCCCGAGTCCGACTATAACTA 58.502 52.381 0.00 0.00 38.22 2.24
1390 1422 3.080319 GCCCGAGTCCGACTATAACTAT 58.920 50.000 0.00 0.00 38.22 2.12
1413 1445 3.474600 CATGGAATAGAGCAGTCCCTTG 58.525 50.000 0.00 0.00 40.90 3.61
1516 1548 5.748630 GCCGTTTCAAAACTCTGAAAGAATT 59.251 36.000 4.28 0.00 46.34 2.17
1518 1550 7.113544 GCCGTTTCAAAACTCTGAAAGAATTAG 59.886 37.037 4.28 0.00 46.34 1.73
1568 1600 1.062488 GGTGGGAGAGGCCATGGTAT 61.062 60.000 14.67 1.44 38.95 2.73
1599 1631 2.608546 CTCTGACTGCTTATGCTTGCTC 59.391 50.000 1.96 0.00 40.48 4.26
1600 1632 1.326852 CTGACTGCTTATGCTTGCTCG 59.673 52.381 1.96 0.00 40.48 5.03
1601 1633 1.066929 TGACTGCTTATGCTTGCTCGA 60.067 47.619 1.96 0.00 40.48 4.04
1602 1634 1.325943 GACTGCTTATGCTTGCTCGAC 59.674 52.381 1.96 0.00 40.48 4.20
1603 1635 0.299895 CTGCTTATGCTTGCTCGACG 59.700 55.000 1.96 0.00 40.48 5.12
1604 1636 1.011794 GCTTATGCTTGCTCGACGC 60.012 57.895 0.00 0.58 36.16 5.19
1605 1637 1.638467 CTTATGCTTGCTCGACGCC 59.362 57.895 4.73 0.00 38.05 5.68
1606 1638 2.082437 CTTATGCTTGCTCGACGCCG 62.082 60.000 4.73 0.00 38.05 6.46
1609 1641 4.789075 GCTTGCTCGACGCCGGTA 62.789 66.667 1.90 0.00 38.05 4.02
1610 1642 2.126228 CTTGCTCGACGCCGGTAA 60.126 61.111 1.90 0.00 38.05 2.85
1645 1690 1.216122 CGTGGTTTGTTTTGCATGGG 58.784 50.000 0.00 0.00 0.00 4.00
1692 1737 1.668151 GACTGTTGACTCCCGGCAC 60.668 63.158 0.00 0.00 0.00 5.01
1800 1845 5.190992 TGACTGTGTTTGTACTGTACGAT 57.809 39.130 12.87 0.00 33.63 3.73
1911 1956 2.604299 TAGCGCCTCGACCTCAGCTA 62.604 60.000 2.29 0.00 36.30 3.32
1912 1957 3.064987 GCGCCTCGACCTCAGCTAA 62.065 63.158 0.00 0.00 0.00 3.09
1976 2025 2.872925 GCTCTTTACGACGCGCGA 60.873 61.111 39.36 11.73 44.57 5.87
2048 2097 6.773685 ACTTACTCTACTATCATGAGGTGACC 59.226 42.308 12.56 0.00 40.28 4.02
2164 2217 5.335819 GCGGCCTAAAAATGGTTAGTTACAA 60.336 40.000 0.00 0.00 30.39 2.41
2202 2255 3.437049 GCAAATCTTGTAGACCACTCACC 59.563 47.826 0.00 0.00 0.00 4.02
2223 2276 3.000322 CCGATTCACACTTGATAAGTCGC 60.000 47.826 0.00 0.00 40.46 5.19
2346 2399 5.069318 TGTGGATCACAACAAATTAGAGCA 58.931 37.500 0.00 0.00 41.69 4.26
2347 2400 5.711506 TGTGGATCACAACAAATTAGAGCAT 59.288 36.000 0.00 0.00 41.69 3.79
2862 2978 2.539688 TGTAGCGATGCGTGAATGAATC 59.460 45.455 0.00 0.00 0.00 2.52
2872 2988 2.935849 CGTGAATGAATCGGGAATGTGA 59.064 45.455 0.00 0.00 0.00 3.58
2877 2993 6.473455 GTGAATGAATCGGGAATGTGAAATTC 59.527 38.462 0.00 0.00 0.00 2.17
2902 3018 8.094548 TCTGGATAAGAAAGAAGAATTGTTCGA 58.905 33.333 9.47 0.00 25.94 3.71
2909 3025 3.330267 AGAAGAATTGTTCGAGGCTGAC 58.670 45.455 9.47 0.00 34.02 3.51
2922 3038 2.426842 GGCTGACCTGGCTTTCTATT 57.573 50.000 0.00 0.00 0.00 1.73
2923 3039 3.560636 GGCTGACCTGGCTTTCTATTA 57.439 47.619 0.00 0.00 0.00 0.98
2924 3040 3.206964 GGCTGACCTGGCTTTCTATTAC 58.793 50.000 0.00 0.00 0.00 1.89
2925 3041 3.118223 GGCTGACCTGGCTTTCTATTACT 60.118 47.826 0.00 0.00 0.00 2.24
2926 3042 4.101119 GGCTGACCTGGCTTTCTATTACTA 59.899 45.833 0.00 0.00 0.00 1.82
2927 3043 5.051153 GCTGACCTGGCTTTCTATTACTAC 58.949 45.833 0.00 0.00 0.00 2.73
2928 3044 5.163395 GCTGACCTGGCTTTCTATTACTACT 60.163 44.000 0.00 0.00 0.00 2.57
2929 3045 6.222038 TGACCTGGCTTTCTATTACTACTG 57.778 41.667 0.00 0.00 0.00 2.74
2932 3048 7.068348 TGACCTGGCTTTCTATTACTACTGTAG 59.932 40.741 13.13 13.13 0.00 2.74
2971 3089 4.700268 TGCACGTTCTGATTTATTGCAT 57.300 36.364 0.00 0.00 33.72 3.96
2980 3098 0.871163 ATTTATTGCATGCACGCCGC 60.871 50.000 22.58 0.00 42.89 6.53
3089 3208 2.190161 GGTTTTGAAAACGGTGTGCTC 58.810 47.619 13.93 0.00 0.00 4.26
3090 3209 2.190161 GTTTTGAAAACGGTGTGCTCC 58.810 47.619 4.92 0.00 0.00 4.70
3099 3218 4.459089 GTGTGCTCCGGGCCTCTC 62.459 72.222 0.84 0.00 40.92 3.20
3112 3231 4.069232 CTCTCGTGCCCGCCTCAA 62.069 66.667 0.00 0.00 0.00 3.02
3113 3232 3.589654 CTCTCGTGCCCGCCTCAAA 62.590 63.158 0.00 0.00 0.00 2.69
3114 3233 3.423154 CTCGTGCCCGCCTCAAAC 61.423 66.667 0.00 0.00 0.00 2.93
3115 3234 4.243008 TCGTGCCCGCCTCAAACA 62.243 61.111 0.00 0.00 0.00 2.83
3116 3235 4.025401 CGTGCCCGCCTCAAACAC 62.025 66.667 0.00 0.00 0.00 3.32
3117 3236 3.670377 GTGCCCGCCTCAAACACC 61.670 66.667 0.00 0.00 0.00 4.16
3118 3237 3.884774 TGCCCGCCTCAAACACCT 61.885 61.111 0.00 0.00 0.00 4.00
3119 3238 3.365265 GCCCGCCTCAAACACCTG 61.365 66.667 0.00 0.00 0.00 4.00
3120 3239 3.365265 CCCGCCTCAAACACCTGC 61.365 66.667 0.00 0.00 0.00 4.85
3121 3240 2.594303 CCGCCTCAAACACCTGCA 60.594 61.111 0.00 0.00 0.00 4.41
3122 3241 2.639286 CGCCTCAAACACCTGCAC 59.361 61.111 0.00 0.00 0.00 4.57
3123 3242 2.186160 CGCCTCAAACACCTGCACA 61.186 57.895 0.00 0.00 0.00 4.57
3124 3243 1.360192 GCCTCAAACACCTGCACAC 59.640 57.895 0.00 0.00 0.00 3.82
3125 3244 1.383456 GCCTCAAACACCTGCACACA 61.383 55.000 0.00 0.00 0.00 3.72
3126 3245 0.381801 CCTCAAACACCTGCACACAC 59.618 55.000 0.00 0.00 0.00 3.82
3127 3246 0.381801 CTCAAACACCTGCACACACC 59.618 55.000 0.00 0.00 0.00 4.16
3128 3247 0.322906 TCAAACACCTGCACACACCA 60.323 50.000 0.00 0.00 0.00 4.17
3129 3248 0.746063 CAAACACCTGCACACACCAT 59.254 50.000 0.00 0.00 0.00 3.55
3130 3249 1.952990 CAAACACCTGCACACACCATA 59.047 47.619 0.00 0.00 0.00 2.74
3131 3250 2.557924 CAAACACCTGCACACACCATAT 59.442 45.455 0.00 0.00 0.00 1.78
3132 3251 1.825090 ACACCTGCACACACCATATG 58.175 50.000 0.00 0.00 0.00 1.78
3133 3252 1.350684 ACACCTGCACACACCATATGA 59.649 47.619 3.65 0.00 0.00 2.15
3134 3253 2.025981 ACACCTGCACACACCATATGAT 60.026 45.455 3.65 0.00 0.00 2.45
3135 3254 2.615447 CACCTGCACACACCATATGATC 59.385 50.000 3.65 0.00 0.00 2.92
3136 3255 2.239402 ACCTGCACACACCATATGATCA 59.761 45.455 3.65 0.00 0.00 2.92
3137 3256 2.615447 CCTGCACACACCATATGATCAC 59.385 50.000 3.65 0.00 0.00 3.06
3138 3257 3.538591 CTGCACACACCATATGATCACT 58.461 45.455 3.65 0.00 0.00 3.41
3139 3258 3.272581 TGCACACACCATATGATCACTG 58.727 45.455 3.65 0.00 0.00 3.66
3140 3259 3.055240 TGCACACACCATATGATCACTGA 60.055 43.478 3.65 0.00 0.00 3.41
3141 3260 3.310774 GCACACACCATATGATCACTGAC 59.689 47.826 3.65 0.00 0.00 3.51
3142 3261 3.873361 CACACACCATATGATCACTGACC 59.127 47.826 3.65 0.00 0.00 4.02
3143 3262 3.126073 CACACCATATGATCACTGACCG 58.874 50.000 3.65 0.00 0.00 4.79
3144 3263 2.766263 ACACCATATGATCACTGACCGT 59.234 45.455 3.65 0.00 0.00 4.83
3145 3264 3.958147 ACACCATATGATCACTGACCGTA 59.042 43.478 3.65 0.00 0.00 4.02
3146 3265 4.404394 ACACCATATGATCACTGACCGTAA 59.596 41.667 3.65 0.00 0.00 3.18
3147 3266 5.105106 ACACCATATGATCACTGACCGTAAA 60.105 40.000 3.65 0.00 0.00 2.01
3148 3267 5.991606 CACCATATGATCACTGACCGTAAAT 59.008 40.000 3.65 0.00 0.00 1.40
3149 3268 7.151976 CACCATATGATCACTGACCGTAAATA 58.848 38.462 3.65 0.00 0.00 1.40
3150 3269 7.655732 CACCATATGATCACTGACCGTAAATAA 59.344 37.037 3.65 0.00 0.00 1.40
3151 3270 8.208224 ACCATATGATCACTGACCGTAAATAAA 58.792 33.333 3.65 0.00 0.00 1.40
3152 3271 8.495949 CCATATGATCACTGACCGTAAATAAAC 58.504 37.037 3.65 0.00 0.00 2.01
3153 3272 6.583912 ATGATCACTGACCGTAAATAAACG 57.416 37.500 0.00 0.00 42.49 3.60
3154 3273 5.712004 TGATCACTGACCGTAAATAAACGA 58.288 37.500 0.00 0.00 45.68 3.85
3155 3274 6.157904 TGATCACTGACCGTAAATAAACGAA 58.842 36.000 0.00 0.00 45.68 3.85
3156 3275 5.827568 TCACTGACCGTAAATAAACGAAC 57.172 39.130 0.00 0.00 45.68 3.95
3157 3276 4.685628 TCACTGACCGTAAATAAACGAACC 59.314 41.667 0.00 0.00 45.68 3.62
3158 3277 4.448395 CACTGACCGTAAATAAACGAACCA 59.552 41.667 0.00 0.00 45.68 3.67
3159 3278 5.050227 CACTGACCGTAAATAAACGAACCAA 60.050 40.000 0.00 0.00 45.68 3.67
3160 3279 5.050159 ACTGACCGTAAATAAACGAACCAAC 60.050 40.000 0.00 0.00 45.68 3.77
3161 3280 4.213059 TGACCGTAAATAAACGAACCAACC 59.787 41.667 0.00 0.00 45.68 3.77
3162 3281 3.186205 ACCGTAAATAAACGAACCAACCG 59.814 43.478 0.00 0.00 45.68 4.44
3163 3282 3.424697 CCGTAAATAAACGAACCAACCGG 60.425 47.826 0.00 0.00 45.68 5.28
3164 3283 3.431572 CGTAAATAAACGAACCAACCGGA 59.568 43.478 9.46 0.00 45.68 5.14
3165 3284 3.902261 AAATAAACGAACCAACCGGAC 57.098 42.857 9.46 0.00 35.59 4.79
3166 3285 1.812235 ATAAACGAACCAACCGGACC 58.188 50.000 9.46 0.00 35.59 4.46
3167 3286 0.758123 TAAACGAACCAACCGGACCT 59.242 50.000 9.46 0.00 35.59 3.85
3168 3287 0.533531 AAACGAACCAACCGGACCTC 60.534 55.000 9.46 0.00 35.59 3.85
3169 3288 1.405272 AACGAACCAACCGGACCTCT 61.405 55.000 9.46 0.00 35.59 3.69
3170 3289 1.370064 CGAACCAACCGGACCTCTT 59.630 57.895 9.46 0.00 35.59 2.85
3171 3290 0.604578 CGAACCAACCGGACCTCTTA 59.395 55.000 9.46 0.00 35.59 2.10
3172 3291 1.001181 CGAACCAACCGGACCTCTTAA 59.999 52.381 9.46 0.00 35.59 1.85
3173 3292 2.548493 CGAACCAACCGGACCTCTTAAA 60.548 50.000 9.46 0.00 35.59 1.52
3174 3293 2.853235 ACCAACCGGACCTCTTAAAG 57.147 50.000 9.46 0.00 35.59 1.85
3175 3294 1.271217 ACCAACCGGACCTCTTAAAGC 60.271 52.381 9.46 0.00 35.59 3.51
3176 3295 1.271163 CCAACCGGACCTCTTAAAGCA 60.271 52.381 9.46 0.00 0.00 3.91
3180 3299 0.245539 CGGACCTCTTAAAGCACGGA 59.754 55.000 0.00 0.00 0.00 4.69
3185 3304 2.028930 ACCTCTTAAAGCACGGACTGAG 60.029 50.000 0.00 0.00 0.00 3.35
3191 3310 3.106407 GCACGGACTGAGCGACAC 61.106 66.667 0.00 0.00 0.00 3.67
3206 3325 1.807814 GACACCCCCTCATATCCAGT 58.192 55.000 0.00 0.00 0.00 4.00
3207 3326 2.127708 GACACCCCCTCATATCCAGTT 58.872 52.381 0.00 0.00 0.00 3.16
3220 3339 7.768120 CCTCATATCCAGTTCAAATATAGAGCC 59.232 40.741 0.00 0.00 0.00 4.70
3238 3377 1.835267 CGATATGGGGTGGTCCGGA 60.835 63.158 0.00 0.00 36.01 5.14
3267 3406 2.262774 CTGACAGGTCCAGCCCATCC 62.263 65.000 0.00 0.00 38.26 3.51
3279 3419 3.096495 CCATCCCCGACCCCACAT 61.096 66.667 0.00 0.00 0.00 3.21
3294 3434 2.621929 CCCACATAAAACCCCAATCCGA 60.622 50.000 0.00 0.00 0.00 4.55
3324 3464 3.431068 GCTTAAACCCTAGCTCACTCTCC 60.431 52.174 0.00 0.00 34.57 3.71
3335 3475 1.287739 CTCACTCTCCCCCTCTCTCTT 59.712 57.143 0.00 0.00 0.00 2.85
3346 3488 1.110442 CTCTCTCTTGCTCCGTCCAT 58.890 55.000 0.00 0.00 0.00 3.41
3348 3490 1.902508 TCTCTCTTGCTCCGTCCATTT 59.097 47.619 0.00 0.00 0.00 2.32
3359 3507 2.243994 TCCGTCCATTTCTCTCCCTCTA 59.756 50.000 0.00 0.00 0.00 2.43
3376 3524 3.085533 CTCTACGATTCCGATCCCATCT 58.914 50.000 0.00 0.00 39.50 2.90
3379 3527 2.877866 ACGATTCCGATCCCATCTACT 58.122 47.619 0.00 0.00 39.50 2.57
3390 3538 3.562182 TCCCATCTACTACGATGAGCAA 58.438 45.455 2.57 0.00 42.63 3.91
3393 3542 4.202161 CCCATCTACTACGATGAGCAACTT 60.202 45.833 2.57 0.00 42.63 2.66
3394 3543 5.352284 CCATCTACTACGATGAGCAACTTT 58.648 41.667 2.57 0.00 42.63 2.66
3400 3551 5.967088 ACTACGATGAGCAACTTTGATAGT 58.033 37.500 0.00 0.00 39.32 2.12
3498 3649 1.519719 GCAGCTTCGGATCTGGAGT 59.480 57.895 11.66 0.00 0.00 3.85
3522 3673 4.783621 GCAGCTCCCATGCCGACA 62.784 66.667 0.00 0.00 37.73 4.35
3524 3675 4.457496 AGCTCCCATGCCGACACG 62.457 66.667 0.00 0.00 0.00 4.49
3615 3767 3.068691 CGCCGTCTCCTTCCTCCA 61.069 66.667 0.00 0.00 0.00 3.86
3616 3768 2.646175 CGCCGTCTCCTTCCTCCAA 61.646 63.158 0.00 0.00 0.00 3.53
3701 3860 4.087892 AGAGTTGGAGGCGCGCAT 62.088 61.111 34.42 29.11 0.00 4.73
3733 3892 2.203640 TGCACAGGAGAGGGACGT 60.204 61.111 0.00 0.00 0.00 4.34
3734 3893 1.837051 TGCACAGGAGAGGGACGTT 60.837 57.895 0.00 0.00 0.00 3.99
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
101 105 1.321074 ACTAGCTACCACCAGTCGCC 61.321 60.000 0.00 0.00 37.90 5.54
107 111 0.033796 ACGGCTACTAGCTACCACCA 60.034 55.000 7.99 0.00 41.99 4.17
136 140 2.035632 GACTGTCCTCATCCCTCGATT 58.964 52.381 0.00 0.00 0.00 3.34
164 168 1.206371 CCTTGGAAGATACCGGTTCGT 59.794 52.381 15.04 8.73 0.00 3.85
224 228 4.704833 CCCTGTCCCGGTGTGCTG 62.705 72.222 0.00 0.00 0.00 4.41
230 234 0.622136 GTTAATTCCCCTGTCCCGGT 59.378 55.000 0.00 0.00 0.00 5.28
232 236 1.838077 AGAGTTAATTCCCCTGTCCCG 59.162 52.381 0.00 0.00 0.00 5.14
235 239 6.547930 AGAACTAGAGTTAATTCCCCTGTC 57.452 41.667 0.00 0.00 38.56 3.51
240 244 9.674068 ATTTCTGAAGAACTAGAGTTAATTCCC 57.326 33.333 0.00 0.00 38.56 3.97
276 280 0.253160 ACCCTAAGATGTCAGGCCCA 60.253 55.000 0.00 0.00 0.00 5.36
306 310 1.434696 CATTCATGACCGCCCTTGC 59.565 57.895 0.00 0.00 0.00 4.01
307 311 1.386525 CCCATTCATGACCGCCCTTG 61.387 60.000 0.00 0.00 0.00 3.61
308 312 1.076777 CCCATTCATGACCGCCCTT 60.077 57.895 0.00 0.00 0.00 3.95
309 313 1.863155 AACCCATTCATGACCGCCCT 61.863 55.000 0.00 0.00 0.00 5.19
310 314 1.379843 AACCCATTCATGACCGCCC 60.380 57.895 0.00 0.00 0.00 6.13
311 315 1.666209 CCAACCCATTCATGACCGCC 61.666 60.000 0.00 0.00 0.00 6.13
312 316 1.666209 CCCAACCCATTCATGACCGC 61.666 60.000 0.00 0.00 0.00 5.68
313 317 0.034574 TCCCAACCCATTCATGACCG 60.035 55.000 0.00 0.00 0.00 4.79
314 318 2.310538 GATCCCAACCCATTCATGACC 58.689 52.381 0.00 0.00 0.00 4.02
315 319 1.949525 CGATCCCAACCCATTCATGAC 59.050 52.381 0.00 0.00 0.00 3.06
316 320 1.563879 ACGATCCCAACCCATTCATGA 59.436 47.619 0.00 0.00 0.00 3.07
317 321 2.057137 ACGATCCCAACCCATTCATG 57.943 50.000 0.00 0.00 0.00 3.07
318 322 2.025416 TGAACGATCCCAACCCATTCAT 60.025 45.455 0.00 0.00 0.00 2.57
319 323 1.352687 TGAACGATCCCAACCCATTCA 59.647 47.619 0.00 0.00 0.00 2.57
320 324 2.017049 CTGAACGATCCCAACCCATTC 58.983 52.381 0.00 0.00 0.00 2.67
321 325 1.633432 TCTGAACGATCCCAACCCATT 59.367 47.619 0.00 0.00 0.00 3.16
322 326 1.285280 TCTGAACGATCCCAACCCAT 58.715 50.000 0.00 0.00 0.00 4.00
323 327 1.060729 TTCTGAACGATCCCAACCCA 58.939 50.000 0.00 0.00 0.00 4.51
324 328 2.194201 TTTCTGAACGATCCCAACCC 57.806 50.000 0.00 0.00 0.00 4.11
325 329 5.064834 GTCTATTTTCTGAACGATCCCAACC 59.935 44.000 0.00 0.00 0.00 3.77
326 330 5.642063 TGTCTATTTTCTGAACGATCCCAAC 59.358 40.000 0.00 0.00 0.00 3.77
327 331 5.800296 TGTCTATTTTCTGAACGATCCCAA 58.200 37.500 0.00 0.00 0.00 4.12
328 332 5.414789 TGTCTATTTTCTGAACGATCCCA 57.585 39.130 0.00 0.00 0.00 4.37
329 333 5.817816 ACATGTCTATTTTCTGAACGATCCC 59.182 40.000 0.00 0.00 0.00 3.85
330 334 6.910536 ACATGTCTATTTTCTGAACGATCC 57.089 37.500 0.00 0.00 0.00 3.36
331 335 7.693951 CCAAACATGTCTATTTTCTGAACGATC 59.306 37.037 0.00 0.00 0.00 3.69
332 336 7.174946 ACCAAACATGTCTATTTTCTGAACGAT 59.825 33.333 0.00 0.00 0.00 3.73
333 337 6.485313 ACCAAACATGTCTATTTTCTGAACGA 59.515 34.615 0.00 0.00 0.00 3.85
334 338 6.668323 ACCAAACATGTCTATTTTCTGAACG 58.332 36.000 0.00 0.00 0.00 3.95
342 346 9.855021 GTGCTTTATAACCAAACATGTCTATTT 57.145 29.630 0.00 0.00 0.00 1.40
343 347 9.019656 TGTGCTTTATAACCAAACATGTCTATT 57.980 29.630 0.00 0.00 0.00 1.73
344 348 8.574251 TGTGCTTTATAACCAAACATGTCTAT 57.426 30.769 0.00 0.00 0.00 1.98
345 349 7.987750 TGTGCTTTATAACCAAACATGTCTA 57.012 32.000 0.00 0.00 0.00 2.59
346 350 6.892658 TGTGCTTTATAACCAAACATGTCT 57.107 33.333 0.00 0.00 0.00 3.41
347 351 7.312154 TCATGTGCTTTATAACCAAACATGTC 58.688 34.615 19.24 0.00 42.41 3.06
348 352 7.225784 TCATGTGCTTTATAACCAAACATGT 57.774 32.000 19.24 0.00 42.41 3.21
349 353 8.597227 CATTCATGTGCTTTATAACCAAACATG 58.403 33.333 16.42 16.42 42.90 3.21
350 354 7.765360 CCATTCATGTGCTTTATAACCAAACAT 59.235 33.333 0.00 0.00 0.00 2.71
351 355 7.095910 CCATTCATGTGCTTTATAACCAAACA 58.904 34.615 0.00 0.00 0.00 2.83
352 356 7.096551 ACCATTCATGTGCTTTATAACCAAAC 58.903 34.615 0.00 0.00 0.00 2.93
353 357 7.238486 ACCATTCATGTGCTTTATAACCAAA 57.762 32.000 0.00 0.00 0.00 3.28
354 358 6.849085 ACCATTCATGTGCTTTATAACCAA 57.151 33.333 0.00 0.00 0.00 3.67
355 359 6.404184 CGAACCATTCATGTGCTTTATAACCA 60.404 38.462 0.00 0.00 0.00 3.67
356 360 5.971202 CGAACCATTCATGTGCTTTATAACC 59.029 40.000 0.00 0.00 0.00 2.85
357 361 6.781138 TCGAACCATTCATGTGCTTTATAAC 58.219 36.000 0.00 0.00 0.00 1.89
358 362 6.458206 GCTCGAACCATTCATGTGCTTTATAA 60.458 38.462 0.00 0.00 0.00 0.98
359 363 5.007626 GCTCGAACCATTCATGTGCTTTATA 59.992 40.000 0.00 0.00 0.00 0.98
360 364 4.201950 GCTCGAACCATTCATGTGCTTTAT 60.202 41.667 0.00 0.00 0.00 1.40
361 365 3.126858 GCTCGAACCATTCATGTGCTTTA 59.873 43.478 0.00 0.00 0.00 1.85
362 366 2.095059 GCTCGAACCATTCATGTGCTTT 60.095 45.455 0.00 0.00 0.00 3.51
363 367 1.470098 GCTCGAACCATTCATGTGCTT 59.530 47.619 0.00 0.00 0.00 3.91
364 368 1.089920 GCTCGAACCATTCATGTGCT 58.910 50.000 0.00 0.00 0.00 4.40
365 369 1.089920 AGCTCGAACCATTCATGTGC 58.910 50.000 0.00 0.00 0.00 4.57
366 370 4.944962 TTTAGCTCGAACCATTCATGTG 57.055 40.909 0.00 0.00 0.00 3.21
367 371 5.957842 TTTTTAGCTCGAACCATTCATGT 57.042 34.783 0.00 0.00 0.00 3.21
386 390 9.485206 GCATCTTCATGGCATATTCTAATTTTT 57.515 29.630 0.00 0.00 0.00 1.94
387 391 8.867097 AGCATCTTCATGGCATATTCTAATTTT 58.133 29.630 0.00 0.00 0.00 1.82
388 392 8.304596 CAGCATCTTCATGGCATATTCTAATTT 58.695 33.333 0.00 0.00 0.00 1.82
389 393 7.668469 TCAGCATCTTCATGGCATATTCTAATT 59.332 33.333 0.00 0.00 0.00 1.40
390 394 7.173032 TCAGCATCTTCATGGCATATTCTAAT 58.827 34.615 0.00 0.00 0.00 1.73
391 395 6.536447 TCAGCATCTTCATGGCATATTCTAA 58.464 36.000 0.00 0.00 0.00 2.10
392 396 6.117975 TCAGCATCTTCATGGCATATTCTA 57.882 37.500 0.00 0.00 0.00 2.10
393 397 4.981812 TCAGCATCTTCATGGCATATTCT 58.018 39.130 0.00 0.00 0.00 2.40
394 398 5.458891 GTTCAGCATCTTCATGGCATATTC 58.541 41.667 0.00 0.00 0.00 1.75
395 399 4.280174 GGTTCAGCATCTTCATGGCATATT 59.720 41.667 0.00 0.00 0.00 1.28
396 400 3.825014 GGTTCAGCATCTTCATGGCATAT 59.175 43.478 0.00 0.00 0.00 1.78
397 401 3.216800 GGTTCAGCATCTTCATGGCATA 58.783 45.455 0.00 0.00 0.00 3.14
398 402 2.029623 GGTTCAGCATCTTCATGGCAT 58.970 47.619 0.00 0.00 0.00 4.40
399 403 1.466856 GGTTCAGCATCTTCATGGCA 58.533 50.000 0.00 0.00 0.00 4.92
400 404 0.379669 CGGTTCAGCATCTTCATGGC 59.620 55.000 0.00 0.00 0.00 4.40
401 405 1.742761 ACGGTTCAGCATCTTCATGG 58.257 50.000 0.00 0.00 0.00 3.66
402 406 2.096496 GGAACGGTTCAGCATCTTCATG 59.904 50.000 21.36 0.00 0.00 3.07
403 407 2.290260 TGGAACGGTTCAGCATCTTCAT 60.290 45.455 21.36 0.00 0.00 2.57
404 408 1.071542 TGGAACGGTTCAGCATCTTCA 59.928 47.619 21.36 5.77 0.00 3.02
405 409 1.464997 GTGGAACGGTTCAGCATCTTC 59.535 52.381 21.36 3.29 0.00 2.87
406 410 1.523758 GTGGAACGGTTCAGCATCTT 58.476 50.000 21.36 0.00 0.00 2.40
407 411 0.321653 GGTGGAACGGTTCAGCATCT 60.322 55.000 21.36 0.00 38.12 2.90
408 412 1.305930 GGGTGGAACGGTTCAGCATC 61.306 60.000 21.36 11.58 38.12 3.91
409 413 1.303317 GGGTGGAACGGTTCAGCAT 60.303 57.895 21.36 0.00 38.12 3.79
410 414 2.112297 GGGTGGAACGGTTCAGCA 59.888 61.111 21.36 9.16 38.12 4.41
411 415 1.527380 TTGGGTGGAACGGTTCAGC 60.527 57.895 21.36 1.11 38.12 4.26
412 416 1.170290 GGTTGGGTGGAACGGTTCAG 61.170 60.000 21.36 0.00 38.12 3.02
413 417 1.152922 GGTTGGGTGGAACGGTTCA 60.153 57.895 21.36 6.13 38.12 3.18
414 418 0.752376 TTGGTTGGGTGGAACGGTTC 60.752 55.000 12.41 12.41 38.12 3.62
415 419 0.324460 TTTGGTTGGGTGGAACGGTT 60.324 50.000 0.00 0.00 38.12 4.44
416 420 0.105913 ATTTGGTTGGGTGGAACGGT 60.106 50.000 0.00 0.00 38.12 4.83
417 421 0.601057 GATTTGGTTGGGTGGAACGG 59.399 55.000 0.00 0.00 38.12 4.44
418 422 0.239879 CGATTTGGTTGGGTGGAACG 59.760 55.000 0.00 0.00 38.12 3.95
419 423 0.601057 CCGATTTGGTTGGGTGGAAC 59.399 55.000 0.00 0.00 0.00 3.62
420 424 3.043998 CCGATTTGGTTGGGTGGAA 57.956 52.632 0.00 0.00 0.00 3.53
421 425 4.832741 CCGATTTGGTTGGGTGGA 57.167 55.556 0.00 0.00 0.00 4.02
430 434 3.694734 CCATTTGATTCGACCGATTTGG 58.305 45.455 0.00 0.00 46.41 3.28
431 435 3.108144 GCCATTTGATTCGACCGATTTG 58.892 45.455 0.00 0.00 0.00 2.32
432 436 2.099098 GGCCATTTGATTCGACCGATTT 59.901 45.455 0.00 0.00 0.00 2.17
433 437 1.676006 GGCCATTTGATTCGACCGATT 59.324 47.619 0.00 0.00 0.00 3.34
434 438 1.308998 GGCCATTTGATTCGACCGAT 58.691 50.000 0.00 0.00 0.00 4.18
435 439 0.035915 TGGCCATTTGATTCGACCGA 60.036 50.000 0.00 0.00 0.00 4.69
436 440 0.098728 GTGGCCATTTGATTCGACCG 59.901 55.000 9.72 0.00 0.00 4.79
437 441 0.455815 GGTGGCCATTTGATTCGACC 59.544 55.000 9.72 0.00 0.00 4.79
438 442 0.455815 GGGTGGCCATTTGATTCGAC 59.544 55.000 9.72 0.00 0.00 4.20
439 443 0.331278 AGGGTGGCCATTTGATTCGA 59.669 50.000 9.72 0.00 0.00 3.71
440 444 1.185315 AAGGGTGGCCATTTGATTCG 58.815 50.000 9.72 0.00 0.00 3.34
446 450 0.325602 CATGCAAAGGGTGGCCATTT 59.674 50.000 9.72 2.01 38.06 2.32
447 451 1.984817 CATGCAAAGGGTGGCCATT 59.015 52.632 9.72 0.00 0.00 3.16
448 452 2.662070 GCATGCAAAGGGTGGCCAT 61.662 57.895 9.72 0.00 0.00 4.40
449 453 3.312718 GCATGCAAAGGGTGGCCA 61.313 61.111 14.21 0.00 0.00 5.36
450 454 2.662070 ATGCATGCAAAGGGTGGCC 61.662 57.895 26.68 0.00 0.00 5.36
451 455 1.448893 CATGCATGCAAAGGGTGGC 60.449 57.895 26.68 0.00 0.00 5.01
452 456 0.108520 GTCATGCATGCAAAGGGTGG 60.109 55.000 26.68 8.41 0.00 4.61
453 457 0.892755 AGTCATGCATGCAAAGGGTG 59.107 50.000 26.68 17.99 0.00 4.61
454 458 2.512692 TAGTCATGCATGCAAAGGGT 57.487 45.000 26.68 11.08 0.00 4.34
455 459 2.691526 ACATAGTCATGCATGCAAAGGG 59.308 45.455 26.68 14.51 35.39 3.95
456 460 3.379057 TCACATAGTCATGCATGCAAAGG 59.621 43.478 26.68 17.10 35.39 3.11
457 461 4.598062 CTCACATAGTCATGCATGCAAAG 58.402 43.478 26.68 20.04 35.39 2.77
458 462 3.181494 GCTCACATAGTCATGCATGCAAA 60.181 43.478 26.68 13.49 35.39 3.68
459 463 2.356695 GCTCACATAGTCATGCATGCAA 59.643 45.455 26.68 8.17 35.39 4.08
460 464 1.944709 GCTCACATAGTCATGCATGCA 59.055 47.619 25.04 25.04 35.39 3.96
461 465 1.944709 TGCTCACATAGTCATGCATGC 59.055 47.619 22.25 11.82 35.39 4.06
463 467 3.813724 GTCATGCTCACATAGTCATGCAT 59.186 43.478 0.00 0.00 41.08 3.96
464 468 3.118519 AGTCATGCTCACATAGTCATGCA 60.119 43.478 0.00 0.00 38.52 3.96
465 469 3.247886 CAGTCATGCTCACATAGTCATGC 59.752 47.826 0.00 0.00 38.52 4.06
466 470 3.808174 CCAGTCATGCTCACATAGTCATG 59.192 47.826 0.00 0.00 39.28 3.07
467 471 3.453717 ACCAGTCATGCTCACATAGTCAT 59.546 43.478 0.00 0.00 33.67 3.06
468 472 2.833943 ACCAGTCATGCTCACATAGTCA 59.166 45.455 0.00 0.00 33.67 3.41
469 473 3.193263 CACCAGTCATGCTCACATAGTC 58.807 50.000 0.00 0.00 33.67 2.59
470 474 2.093288 CCACCAGTCATGCTCACATAGT 60.093 50.000 0.00 0.00 33.67 2.12
471 475 2.093288 ACCACCAGTCATGCTCACATAG 60.093 50.000 0.00 0.00 33.67 2.23
472 476 1.908619 ACCACCAGTCATGCTCACATA 59.091 47.619 0.00 0.00 33.67 2.29
473 477 0.694771 ACCACCAGTCATGCTCACAT 59.305 50.000 0.00 0.00 36.79 3.21
474 478 0.035317 GACCACCAGTCATGCTCACA 59.965 55.000 0.00 0.00 45.55 3.58
475 479 2.846371 GACCACCAGTCATGCTCAC 58.154 57.895 0.00 0.00 45.55 3.51
484 488 0.472352 TTTAGGACGGGACCACCAGT 60.472 55.000 0.00 0.00 46.44 4.00
485 489 0.909623 ATTTAGGACGGGACCACCAG 59.090 55.000 0.00 0.00 40.22 4.00
486 490 2.250921 TATTTAGGACGGGACCACCA 57.749 50.000 0.00 0.00 40.22 4.17
487 491 3.851458 ATTATTTAGGACGGGACCACC 57.149 47.619 0.00 0.00 0.00 4.61
488 492 4.753610 GCTAATTATTTAGGACGGGACCAC 59.246 45.833 6.54 0.00 36.18 4.16
489 493 4.657039 AGCTAATTATTTAGGACGGGACCA 59.343 41.667 6.54 0.00 36.18 4.02
490 494 5.221581 TGAGCTAATTATTTAGGACGGGACC 60.222 44.000 6.54 0.00 36.18 4.46
491 495 5.695363 GTGAGCTAATTATTTAGGACGGGAC 59.305 44.000 6.54 0.00 36.18 4.46
492 496 5.221581 GGTGAGCTAATTATTTAGGACGGGA 60.222 44.000 6.54 0.00 36.18 5.14
493 497 4.995487 GGTGAGCTAATTATTTAGGACGGG 59.005 45.833 6.54 0.00 36.18 5.28
494 498 5.465724 GTGGTGAGCTAATTATTTAGGACGG 59.534 44.000 6.54 0.00 36.18 4.79
495 499 6.281405 AGTGGTGAGCTAATTATTTAGGACG 58.719 40.000 6.54 0.00 36.18 4.79
496 500 9.780186 ATAAGTGGTGAGCTAATTATTTAGGAC 57.220 33.333 6.54 0.00 36.18 3.85
503 507 9.442047 GCTGAATATAAGTGGTGAGCTAATTAT 57.558 33.333 0.00 0.00 32.60 1.28
504 508 7.878127 GGCTGAATATAAGTGGTGAGCTAATTA 59.122 37.037 0.00 0.00 0.00 1.40
505 509 6.712547 GGCTGAATATAAGTGGTGAGCTAATT 59.287 38.462 0.00 0.00 0.00 1.40
506 510 6.183361 TGGCTGAATATAAGTGGTGAGCTAAT 60.183 38.462 0.00 0.00 0.00 1.73
507 511 5.130311 TGGCTGAATATAAGTGGTGAGCTAA 59.870 40.000 0.00 0.00 0.00 3.09
508 512 4.653801 TGGCTGAATATAAGTGGTGAGCTA 59.346 41.667 0.00 0.00 0.00 3.32
509 513 3.455910 TGGCTGAATATAAGTGGTGAGCT 59.544 43.478 0.00 0.00 0.00 4.09
510 514 3.808728 TGGCTGAATATAAGTGGTGAGC 58.191 45.455 0.00 0.00 0.00 4.26
511 515 5.647658 TGTTTGGCTGAATATAAGTGGTGAG 59.352 40.000 0.00 0.00 0.00 3.51
512 516 5.414454 GTGTTTGGCTGAATATAAGTGGTGA 59.586 40.000 0.00 0.00 0.00 4.02
513 517 5.182950 TGTGTTTGGCTGAATATAAGTGGTG 59.817 40.000 0.00 0.00 0.00 4.17
514 518 5.321102 TGTGTTTGGCTGAATATAAGTGGT 58.679 37.500 0.00 0.00 0.00 4.16
515 519 5.895636 TGTGTTTGGCTGAATATAAGTGG 57.104 39.130 0.00 0.00 0.00 4.00
516 520 7.087409 TCATGTGTTTGGCTGAATATAAGTG 57.913 36.000 0.00 0.00 0.00 3.16
517 521 7.701539 TTCATGTGTTTGGCTGAATATAAGT 57.298 32.000 0.00 0.00 0.00 2.24
518 522 9.027129 CAATTCATGTGTTTGGCTGAATATAAG 57.973 33.333 0.00 0.00 37.35 1.73
519 523 8.747471 TCAATTCATGTGTTTGGCTGAATATAA 58.253 29.630 0.00 0.00 37.35 0.98
520 524 8.291191 TCAATTCATGTGTTTGGCTGAATATA 57.709 30.769 0.00 0.00 37.35 0.86
521 525 7.172868 TCAATTCATGTGTTTGGCTGAATAT 57.827 32.000 0.00 0.00 37.35 1.28
522 526 6.587206 TCAATTCATGTGTTTGGCTGAATA 57.413 33.333 0.00 0.00 37.35 1.75
523 527 5.471556 TCAATTCATGTGTTTGGCTGAAT 57.528 34.783 0.00 0.00 39.39 2.57
524 528 4.933505 TCAATTCATGTGTTTGGCTGAA 57.066 36.364 0.00 0.00 32.63 3.02
525 529 4.933505 TTCAATTCATGTGTTTGGCTGA 57.066 36.364 0.00 0.00 0.00 4.26
526 530 5.231702 TCATTCAATTCATGTGTTTGGCTG 58.768 37.500 0.00 0.00 0.00 4.85
527 531 5.471556 TCATTCAATTCATGTGTTTGGCT 57.528 34.783 0.00 0.00 0.00 4.75
528 532 6.369340 TGAATCATTCAATTCATGTGTTTGGC 59.631 34.615 0.00 0.00 39.98 4.52
529 533 7.892778 TGAATCATTCAATTCATGTGTTTGG 57.107 32.000 0.00 0.00 39.98 3.28
562 566 7.256727 ATAAATGGGTTGGGACCGTTTAATTTT 60.257 33.333 11.54 0.00 46.66 1.82
563 567 6.213802 ATAAATGGGTTGGGACCGTTTAATTT 59.786 34.615 11.54 4.89 46.66 1.82
564 568 5.722441 ATAAATGGGTTGGGACCGTTTAATT 59.278 36.000 11.54 0.00 46.66 1.40
565 569 5.274015 ATAAATGGGTTGGGACCGTTTAAT 58.726 37.500 11.54 1.25 46.66 1.40
566 570 4.675038 ATAAATGGGTTGGGACCGTTTAA 58.325 39.130 11.54 0.00 46.66 1.52
572 576 3.208594 GTCGTATAAATGGGTTGGGACC 58.791 50.000 0.00 0.00 45.75 4.46
573 577 3.624410 GTGTCGTATAAATGGGTTGGGAC 59.376 47.826 0.00 0.00 0.00 4.46
574 578 3.679361 CGTGTCGTATAAATGGGTTGGGA 60.679 47.826 0.00 0.00 0.00 4.37
575 579 2.610374 CGTGTCGTATAAATGGGTTGGG 59.390 50.000 0.00 0.00 0.00 4.12
576 580 3.264104 ACGTGTCGTATAAATGGGTTGG 58.736 45.455 0.00 0.00 38.73 3.77
577 581 4.389382 TGAACGTGTCGTATAAATGGGTTG 59.611 41.667 0.00 0.00 39.99 3.77
578 582 4.567971 TGAACGTGTCGTATAAATGGGTT 58.432 39.130 0.00 0.00 39.99 4.11
579 583 4.191033 TGAACGTGTCGTATAAATGGGT 57.809 40.909 0.00 0.00 39.99 4.51
580 584 4.201744 GGTTGAACGTGTCGTATAAATGGG 60.202 45.833 0.00 0.00 39.99 4.00
581 585 4.389382 TGGTTGAACGTGTCGTATAAATGG 59.611 41.667 0.00 0.00 39.99 3.16
582 586 5.518529 TGGTTGAACGTGTCGTATAAATG 57.481 39.130 0.00 0.00 39.99 2.32
583 587 6.365050 GTTTGGTTGAACGTGTCGTATAAAT 58.635 36.000 0.00 0.00 39.99 1.40
584 588 5.556006 CGTTTGGTTGAACGTGTCGTATAAA 60.556 40.000 0.00 0.00 45.32 1.40
585 589 4.085158 CGTTTGGTTGAACGTGTCGTATAA 60.085 41.667 0.00 0.00 45.32 0.98
586 590 3.424861 CGTTTGGTTGAACGTGTCGTATA 59.575 43.478 0.00 0.00 45.32 1.47
587 591 2.219216 CGTTTGGTTGAACGTGTCGTAT 59.781 45.455 0.00 0.00 45.32 3.06
588 592 1.587490 CGTTTGGTTGAACGTGTCGTA 59.413 47.619 0.00 0.00 45.32 3.43
589 593 0.370958 CGTTTGGTTGAACGTGTCGT 59.629 50.000 0.00 0.00 45.32 4.34
590 594 3.121945 CGTTTGGTTGAACGTGTCG 57.878 52.632 0.00 0.00 45.32 4.35
596 600 3.347958 TGAAGATGCGTTTGGTTGAAC 57.652 42.857 0.00 0.00 0.00 3.18
597 601 3.057596 GGATGAAGATGCGTTTGGTTGAA 60.058 43.478 0.00 0.00 0.00 2.69
598 602 2.487762 GGATGAAGATGCGTTTGGTTGA 59.512 45.455 0.00 0.00 0.00 3.18
599 603 2.228582 TGGATGAAGATGCGTTTGGTTG 59.771 45.455 0.00 0.00 0.00 3.77
600 604 2.489329 CTGGATGAAGATGCGTTTGGTT 59.511 45.455 0.00 0.00 0.00 3.67
601 605 2.086869 CTGGATGAAGATGCGTTTGGT 58.913 47.619 0.00 0.00 0.00 3.67
602 606 1.402968 CCTGGATGAAGATGCGTTTGG 59.597 52.381 0.00 0.00 0.00 3.28
603 607 2.086869 ACCTGGATGAAGATGCGTTTG 58.913 47.619 0.00 0.00 0.00 2.93
604 608 2.359900 GACCTGGATGAAGATGCGTTT 58.640 47.619 0.00 0.00 0.00 3.60
605 609 1.407437 GGACCTGGATGAAGATGCGTT 60.407 52.381 0.00 0.00 0.00 4.84
606 610 0.179000 GGACCTGGATGAAGATGCGT 59.821 55.000 0.00 0.00 0.00 5.24
607 611 0.533755 GGGACCTGGATGAAGATGCG 60.534 60.000 0.00 0.00 0.00 4.73
608 612 0.548031 TGGGACCTGGATGAAGATGC 59.452 55.000 0.00 0.00 0.00 3.91
609 613 1.142465 CCTGGGACCTGGATGAAGATG 59.858 57.143 8.47 0.00 37.23 2.90
610 614 1.010046 TCCTGGGACCTGGATGAAGAT 59.990 52.381 12.39 0.00 38.79 2.40
611 615 0.417437 TCCTGGGACCTGGATGAAGA 59.583 55.000 12.39 0.00 38.79 2.87
612 616 3.012153 TCCTGGGACCTGGATGAAG 57.988 57.895 12.39 0.00 38.79 3.02
667 671 7.332926 CCTATATGTAGCCTGTTTATTCAGCTG 59.667 40.741 7.63 7.63 34.47 4.24
1350 1375 1.369625 CGTGGTGGTAATGGAGAAGC 58.630 55.000 0.00 0.00 0.00 3.86
1385 1417 5.012561 GGACTGCTCTATTCCATGGATAGTT 59.987 44.000 17.06 3.79 0.00 2.24
1386 1418 4.530161 GGACTGCTCTATTCCATGGATAGT 59.470 45.833 17.06 11.01 0.00 2.12
1387 1419 4.081198 GGGACTGCTCTATTCCATGGATAG 60.081 50.000 17.06 17.78 29.93 2.08
1388 1420 3.840666 GGGACTGCTCTATTCCATGGATA 59.159 47.826 17.06 7.19 29.93 2.59
1389 1421 2.641815 GGGACTGCTCTATTCCATGGAT 59.358 50.000 17.06 8.54 29.93 3.41
1390 1422 2.050144 GGGACTGCTCTATTCCATGGA 58.950 52.381 11.44 11.44 29.93 3.41
1568 1600 1.069204 AGCAGTCAGAGCGAAACAGAA 59.931 47.619 0.00 0.00 37.01 3.02
1599 1631 0.925466 CCTAATTGTTACCGGCGTCG 59.075 55.000 0.29 0.29 0.00 5.12
1600 1632 1.662122 CACCTAATTGTTACCGGCGTC 59.338 52.381 6.01 0.00 0.00 5.19
1601 1633 1.729284 CACCTAATTGTTACCGGCGT 58.271 50.000 6.01 0.00 0.00 5.68
1602 1634 0.375803 GCACCTAATTGTTACCGGCG 59.624 55.000 0.00 0.00 0.00 6.46
1603 1635 0.375803 CGCACCTAATTGTTACCGGC 59.624 55.000 0.00 0.00 0.00 6.13
1604 1636 1.011333 CCGCACCTAATTGTTACCGG 58.989 55.000 0.00 0.00 0.00 5.28
1605 1637 0.375803 GCCGCACCTAATTGTTACCG 59.624 55.000 0.00 0.00 0.00 4.02
1606 1638 0.736636 GGCCGCACCTAATTGTTACC 59.263 55.000 0.00 0.00 34.51 2.85
1607 1639 0.736636 GGGCCGCACCTAATTGTTAC 59.263 55.000 0.00 0.00 39.10 2.50
1608 1640 0.745128 CGGGCCGCACCTAATTGTTA 60.745 55.000 15.42 0.00 39.10 2.41
1609 1641 2.043980 CGGGCCGCACCTAATTGTT 61.044 57.895 15.42 0.00 39.10 2.83
1610 1642 2.437716 CGGGCCGCACCTAATTGT 60.438 61.111 15.42 0.00 39.10 2.71
1635 1680 0.257328 TATCTCCCGCCCATGCAAAA 59.743 50.000 0.00 0.00 37.32 2.44
1645 1690 5.923684 TCATTTTGTTGTTTTTATCTCCCGC 59.076 36.000 0.00 0.00 0.00 6.13
1692 1737 6.019152 CGTCAATAACAAAGTACAAATCCGG 58.981 40.000 0.00 0.00 0.00 5.14
1695 1740 6.741358 GCCTCGTCAATAACAAAGTACAAATC 59.259 38.462 0.00 0.00 0.00 2.17
1800 1845 0.035152 GGATGATGTCCACCTGCACA 60.035 55.000 0.00 0.00 46.96 4.57
2048 2097 2.931969 TGCAAATGAGCTATCACTGACG 59.068 45.455 0.00 0.00 38.57 4.35
2119 2172 3.119291 CTCTCTTGCGTGTGTATGGATC 58.881 50.000 0.00 0.00 0.00 3.36
2202 2255 3.612423 TGCGACTTATCAAGTGTGAATCG 59.388 43.478 0.00 0.00 43.03 3.34
2223 2276 0.394192 TGAGCTCACCTCACCAAGTG 59.606 55.000 13.74 0.00 45.44 3.16
2338 2391 8.874156 TCTTATCCTTGTGACATATGCTCTAAT 58.126 33.333 1.58 0.00 0.00 1.73
2485 2573 2.927580 GCCGGTCTCGAACAGGTCA 61.928 63.158 1.90 0.00 44.37 4.02
2840 2956 2.003196 TCATTCACGCATCGCTACAA 57.997 45.000 0.00 0.00 0.00 2.41
2862 2978 5.822519 TCTTATCCAGAATTTCACATTCCCG 59.177 40.000 0.00 0.00 0.00 5.14
2877 2993 8.256611 TCGAACAATTCTTCTTTCTTATCCAG 57.743 34.615 0.00 0.00 0.00 3.86
2909 3025 7.349412 ACTACAGTAGTAATAGAAAGCCAGG 57.651 40.000 11.84 0.00 37.23 4.45
2921 3037 9.664332 CTACCTTCAAGAGTACTACAGTAGTAA 57.336 37.037 20.11 5.96 42.45 2.24
2922 3038 8.820831 ACTACCTTCAAGAGTACTACAGTAGTA 58.179 37.037 15.43 15.43 40.14 1.82
2923 3039 7.688343 ACTACCTTCAAGAGTACTACAGTAGT 58.312 38.462 17.51 17.51 42.68 2.73
2924 3040 8.564509 AACTACCTTCAAGAGTACTACAGTAG 57.435 38.462 6.00 6.00 0.00 2.57
2925 3041 8.790718 CAAACTACCTTCAAGAGTACTACAGTA 58.209 37.037 0.00 0.00 0.00 2.74
2926 3042 7.659186 CAAACTACCTTCAAGAGTACTACAGT 58.341 38.462 0.00 0.00 0.00 3.55
2927 3043 6.586844 GCAAACTACCTTCAAGAGTACTACAG 59.413 42.308 0.00 0.00 0.00 2.74
2928 3044 6.041182 TGCAAACTACCTTCAAGAGTACTACA 59.959 38.462 0.00 0.00 0.00 2.74
2929 3045 6.365518 GTGCAAACTACCTTCAAGAGTACTAC 59.634 42.308 0.00 0.00 0.00 2.73
2932 3048 4.150098 CGTGCAAACTACCTTCAAGAGTAC 59.850 45.833 0.00 0.00 0.00 2.73
2944 3062 6.032460 GCAATAAATCAGAACGTGCAAACTAC 59.968 38.462 0.00 0.00 0.00 2.73
2980 3098 3.781926 TTGCAGTTCGTGTTGCGCG 62.782 57.895 0.00 0.00 43.13 6.86
2985 3103 0.928229 GTCGTCTTGCAGTTCGTGTT 59.072 50.000 6.44 0.00 0.00 3.32
3095 3214 3.589654 TTTGAGGCGGGCACGAGAG 62.590 63.158 15.48 0.00 44.60 3.20
3096 3215 3.621805 TTTGAGGCGGGCACGAGA 61.622 61.111 15.48 0.00 44.60 4.04
3097 3216 3.423154 GTTTGAGGCGGGCACGAG 61.423 66.667 15.48 0.00 44.60 4.18
3098 3217 4.243008 TGTTTGAGGCGGGCACGA 62.243 61.111 15.48 0.00 44.60 4.35
3099 3218 4.025401 GTGTTTGAGGCGGGCACG 62.025 66.667 2.50 2.50 44.63 5.34
3100 3219 3.670377 GGTGTTTGAGGCGGGCAC 61.670 66.667 3.78 0.00 0.00 5.01
3101 3220 3.884774 AGGTGTTTGAGGCGGGCA 61.885 61.111 3.78 0.00 0.00 5.36
3102 3221 3.365265 CAGGTGTTTGAGGCGGGC 61.365 66.667 0.00 0.00 0.00 6.13
3103 3222 3.365265 GCAGGTGTTTGAGGCGGG 61.365 66.667 0.00 0.00 0.00 6.13
3104 3223 2.594303 TGCAGGTGTTTGAGGCGG 60.594 61.111 0.00 0.00 0.00 6.13
3105 3224 2.186160 TGTGCAGGTGTTTGAGGCG 61.186 57.895 0.00 0.00 0.00 5.52
3106 3225 1.360192 GTGTGCAGGTGTTTGAGGC 59.640 57.895 0.00 0.00 0.00 4.70
3107 3226 0.381801 GTGTGTGCAGGTGTTTGAGG 59.618 55.000 0.00 0.00 0.00 3.86
3108 3227 0.381801 GGTGTGTGCAGGTGTTTGAG 59.618 55.000 0.00 0.00 0.00 3.02
3109 3228 0.322906 TGGTGTGTGCAGGTGTTTGA 60.323 50.000 0.00 0.00 0.00 2.69
3110 3229 0.746063 ATGGTGTGTGCAGGTGTTTG 59.254 50.000 0.00 0.00 0.00 2.93
3111 3230 2.356665 TATGGTGTGTGCAGGTGTTT 57.643 45.000 0.00 0.00 0.00 2.83
3112 3231 2.161855 CATATGGTGTGTGCAGGTGTT 58.838 47.619 0.00 0.00 0.00 3.32
3113 3232 1.350684 TCATATGGTGTGTGCAGGTGT 59.649 47.619 2.13 0.00 0.00 4.16
3114 3233 2.112380 TCATATGGTGTGTGCAGGTG 57.888 50.000 2.13 0.00 0.00 4.00
3115 3234 2.239402 TGATCATATGGTGTGTGCAGGT 59.761 45.455 2.13 0.00 0.00 4.00
3116 3235 2.615447 GTGATCATATGGTGTGTGCAGG 59.385 50.000 0.00 0.00 0.00 4.85
3117 3236 3.311596 CAGTGATCATATGGTGTGTGCAG 59.688 47.826 0.00 0.00 0.00 4.41
3118 3237 3.055240 TCAGTGATCATATGGTGTGTGCA 60.055 43.478 0.00 0.00 0.00 4.57
3119 3238 3.310774 GTCAGTGATCATATGGTGTGTGC 59.689 47.826 0.00 0.00 0.00 4.57
3120 3239 3.873361 GGTCAGTGATCATATGGTGTGTG 59.127 47.826 0.00 0.00 0.00 3.82
3121 3240 3.430790 CGGTCAGTGATCATATGGTGTGT 60.431 47.826 3.88 0.00 0.00 3.72
3122 3241 3.126073 CGGTCAGTGATCATATGGTGTG 58.874 50.000 3.88 0.00 0.00 3.82
3123 3242 2.766263 ACGGTCAGTGATCATATGGTGT 59.234 45.455 3.88 0.00 0.00 4.16
3124 3243 3.459232 ACGGTCAGTGATCATATGGTG 57.541 47.619 3.88 0.00 0.00 4.17
3125 3244 5.607939 TTTACGGTCAGTGATCATATGGT 57.392 39.130 3.88 0.00 0.00 3.55
3126 3245 8.495949 GTTTATTTACGGTCAGTGATCATATGG 58.504 37.037 3.88 0.00 0.00 2.74
3127 3246 8.214472 CGTTTATTTACGGTCAGTGATCATATG 58.786 37.037 3.88 1.24 37.86 1.78
3128 3247 8.139350 TCGTTTATTTACGGTCAGTGATCATAT 58.861 33.333 3.88 0.00 41.67 1.78
3129 3248 7.482474 TCGTTTATTTACGGTCAGTGATCATA 58.518 34.615 3.88 0.00 41.67 2.15
3130 3249 6.334989 TCGTTTATTTACGGTCAGTGATCAT 58.665 36.000 3.88 0.00 41.67 2.45
3131 3250 5.712004 TCGTTTATTTACGGTCAGTGATCA 58.288 37.500 3.88 0.00 41.67 2.92
3132 3251 6.454715 GGTTCGTTTATTTACGGTCAGTGATC 60.455 42.308 0.00 0.00 41.67 2.92
3133 3252 5.349543 GGTTCGTTTATTTACGGTCAGTGAT 59.650 40.000 0.00 0.00 41.67 3.06
3134 3253 4.685628 GGTTCGTTTATTTACGGTCAGTGA 59.314 41.667 0.00 0.00 41.67 3.41
3135 3254 4.448395 TGGTTCGTTTATTTACGGTCAGTG 59.552 41.667 0.00 0.00 41.67 3.66
3136 3255 4.630111 TGGTTCGTTTATTTACGGTCAGT 58.370 39.130 0.00 0.00 41.67 3.41
3137 3256 5.376537 GTTGGTTCGTTTATTTACGGTCAG 58.623 41.667 0.00 0.00 41.67 3.51
3138 3257 4.213059 GGTTGGTTCGTTTATTTACGGTCA 59.787 41.667 0.00 0.00 41.67 4.02
3139 3258 4.666402 CGGTTGGTTCGTTTATTTACGGTC 60.666 45.833 0.00 0.00 41.67 4.79
3140 3259 3.186205 CGGTTGGTTCGTTTATTTACGGT 59.814 43.478 0.00 0.00 41.67 4.83
3141 3260 3.424697 CCGGTTGGTTCGTTTATTTACGG 60.425 47.826 0.00 0.00 41.67 4.02
3142 3261 3.431572 TCCGGTTGGTTCGTTTATTTACG 59.568 43.478 0.00 0.00 38.52 3.18
3143 3262 4.378356 GGTCCGGTTGGTTCGTTTATTTAC 60.378 45.833 0.00 0.00 36.30 2.01
3144 3263 3.750652 GGTCCGGTTGGTTCGTTTATTTA 59.249 43.478 0.00 0.00 36.30 1.40
3145 3264 2.553602 GGTCCGGTTGGTTCGTTTATTT 59.446 45.455 0.00 0.00 36.30 1.40
3146 3265 2.153645 GGTCCGGTTGGTTCGTTTATT 58.846 47.619 0.00 0.00 36.30 1.40
3147 3266 1.348696 AGGTCCGGTTGGTTCGTTTAT 59.651 47.619 0.00 0.00 36.30 1.40
3148 3267 0.758123 AGGTCCGGTTGGTTCGTTTA 59.242 50.000 0.00 0.00 36.30 2.01
3149 3268 0.533531 GAGGTCCGGTTGGTTCGTTT 60.534 55.000 0.00 0.00 36.30 3.60
3150 3269 1.070275 GAGGTCCGGTTGGTTCGTT 59.930 57.895 0.00 0.00 36.30 3.85
3151 3270 1.405272 AAGAGGTCCGGTTGGTTCGT 61.405 55.000 0.00 0.00 36.30 3.85
3152 3271 0.604578 TAAGAGGTCCGGTTGGTTCG 59.395 55.000 0.00 0.00 36.30 3.95
3153 3272 2.845363 TTAAGAGGTCCGGTTGGTTC 57.155 50.000 0.00 0.00 36.30 3.62
3154 3273 2.812983 GCTTTAAGAGGTCCGGTTGGTT 60.813 50.000 0.00 0.00 36.30 3.67
3155 3274 1.271217 GCTTTAAGAGGTCCGGTTGGT 60.271 52.381 0.00 0.00 36.30 3.67
3156 3275 1.271163 TGCTTTAAGAGGTCCGGTTGG 60.271 52.381 0.00 0.00 0.00 3.77
3157 3276 1.804748 GTGCTTTAAGAGGTCCGGTTG 59.195 52.381 0.00 0.00 0.00 3.77
3158 3277 1.607251 CGTGCTTTAAGAGGTCCGGTT 60.607 52.381 0.00 0.00 0.00 4.44
3159 3278 0.037605 CGTGCTTTAAGAGGTCCGGT 60.038 55.000 0.00 0.00 0.00 5.28
3160 3279 0.739813 CCGTGCTTTAAGAGGTCCGG 60.740 60.000 0.00 0.00 0.00 5.14
3161 3280 0.245539 TCCGTGCTTTAAGAGGTCCG 59.754 55.000 0.00 0.00 0.00 4.79
3162 3281 1.275573 AGTCCGTGCTTTAAGAGGTCC 59.724 52.381 0.00 0.00 0.00 4.46
3163 3282 2.029290 TCAGTCCGTGCTTTAAGAGGTC 60.029 50.000 0.00 0.00 0.00 3.85
3164 3283 1.968493 TCAGTCCGTGCTTTAAGAGGT 59.032 47.619 0.00 0.00 0.00 3.85
3165 3284 2.611518 CTCAGTCCGTGCTTTAAGAGG 58.388 52.381 0.00 0.00 0.00 3.69
3166 3285 1.996191 GCTCAGTCCGTGCTTTAAGAG 59.004 52.381 0.00 0.00 0.00 2.85
3167 3286 1.668919 CGCTCAGTCCGTGCTTTAAGA 60.669 52.381 0.00 0.00 31.76 2.10
3168 3287 0.716108 CGCTCAGTCCGTGCTTTAAG 59.284 55.000 0.00 0.00 31.76 1.85
3169 3288 0.315886 TCGCTCAGTCCGTGCTTTAA 59.684 50.000 0.00 0.00 31.76 1.52
3170 3289 0.388134 GTCGCTCAGTCCGTGCTTTA 60.388 55.000 0.00 0.00 31.76 1.85
3171 3290 1.664965 GTCGCTCAGTCCGTGCTTT 60.665 57.895 0.00 0.00 31.76 3.51
3172 3291 2.049063 GTCGCTCAGTCCGTGCTT 60.049 61.111 0.00 0.00 31.76 3.91
3173 3292 3.295273 TGTCGCTCAGTCCGTGCT 61.295 61.111 0.00 0.00 31.76 4.40
3174 3293 3.106407 GTGTCGCTCAGTCCGTGC 61.106 66.667 0.00 0.00 0.00 5.34
3175 3294 2.430921 GGTGTCGCTCAGTCCGTG 60.431 66.667 0.00 0.00 0.00 4.94
3176 3295 3.681835 GGGTGTCGCTCAGTCCGT 61.682 66.667 0.00 0.00 0.00 4.69
3185 3304 1.371558 GGATATGAGGGGGTGTCGC 59.628 63.158 0.00 0.00 0.00 5.19
3191 3310 3.951563 TTTGAACTGGATATGAGGGGG 57.048 47.619 0.00 0.00 0.00 5.40
3206 3325 5.487488 ACCCCATATCGGCTCTATATTTGAA 59.513 40.000 0.00 0.00 0.00 2.69
3207 3326 5.030147 ACCCCATATCGGCTCTATATTTGA 58.970 41.667 0.00 0.00 0.00 2.69
3220 3339 1.835267 TCCGGACCACCCCATATCG 60.835 63.158 0.00 0.00 0.00 2.92
3267 3406 0.681887 GGGTTTTATGTGGGGTCGGG 60.682 60.000 0.00 0.00 0.00 5.14
3279 3419 0.393267 CCGCTCGGATTGGGGTTTTA 60.393 55.000 1.35 0.00 37.50 1.52
3305 3445 2.626149 GGGGAGAGTGAGCTAGGGTTTA 60.626 54.545 0.00 0.00 0.00 2.01
3324 3464 1.671901 GACGGAGCAAGAGAGAGGGG 61.672 65.000 0.00 0.00 0.00 4.79
3335 3475 0.537188 GGAGAGAAATGGACGGAGCA 59.463 55.000 0.00 0.00 0.00 4.26
3346 3488 2.950309 CGGAATCGTAGAGGGAGAGAAA 59.050 50.000 0.00 0.00 43.63 2.52
3348 3490 1.767088 TCGGAATCGTAGAGGGAGAGA 59.233 52.381 0.00 0.00 43.63 3.10
3359 3507 2.877866 AGTAGATGGGATCGGAATCGT 58.122 47.619 0.00 0.00 37.69 3.73
3376 3524 6.972901 CACTATCAAAGTTGCTCATCGTAGTA 59.027 38.462 0.00 0.00 35.76 1.82
3379 3527 5.805486 GTCACTATCAAAGTTGCTCATCGTA 59.195 40.000 0.00 0.00 35.76 3.43
3390 3538 2.166664 GAGCCGGAGTCACTATCAAAGT 59.833 50.000 5.05 0.00 39.81 2.66
3393 3542 0.738975 CGAGCCGGAGTCACTATCAA 59.261 55.000 5.05 0.00 0.00 2.57
3394 3543 2.405143 CGAGCCGGAGTCACTATCA 58.595 57.895 5.05 0.00 0.00 2.15
3455 3606 1.077805 TCTCCACCTTGGACCGCTA 59.922 57.895 0.00 0.00 42.67 4.26
3486 3637 2.415608 GGCGACACTCCAGATCCGA 61.416 63.158 0.00 0.00 0.00 4.55
3526 3677 3.311110 TCCAGCTCCCGTGTCCAC 61.311 66.667 0.00 0.00 0.00 4.02
3527 3678 3.311110 GTCCAGCTCCCGTGTCCA 61.311 66.667 0.00 0.00 0.00 4.02
3639 3791 3.977244 GGCACAAGCACCCAACGG 61.977 66.667 0.00 0.00 44.61 4.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.