Multiple sequence alignment - TraesCS1B01G218600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G218600 chr1B 100.000 3221 0 0 1 3221 395966498 395969718 0.000000e+00 5949.0
1 TraesCS1B01G218600 chr1D 94.694 2337 79 19 752 3074 294219029 294221334 0.000000e+00 3587.0
2 TraesCS1B01G218600 chr1D 96.053 76 3 0 3146 3221 294221485 294221560 1.210000e-24 124.0
3 TraesCS1B01G218600 chr1A 93.005 2130 91 13 816 2931 367010155 367012240 0.000000e+00 3055.0
4 TraesCS1B01G218600 chr1A 96.450 169 4 2 3033 3201 367012291 367012457 8.800000e-71 278.0
5 TraesCS1B01G218600 chr7D 77.869 1098 207 19 1055 2140 45663323 45664396 0.000000e+00 649.0
6 TraesCS1B01G218600 chr4A 78.180 802 160 12 1348 2140 657519623 657518828 6.210000e-137 497.0
7 TraesCS1B01G218600 chr4A 77.556 802 165 12 1348 2140 658239345 658240140 1.350000e-128 470.0
8 TraesCS1B01G218600 chr3A 86.301 73 10 0 1528 1600 38013065 38012993 2.660000e-11 80.5
9 TraesCS1B01G218600 chr3B 86.567 67 9 0 1525 1591 46328609 46328675 1.240000e-09 75.0
10 TraesCS1B01G218600 chr3D 83.562 73 12 0 1528 1600 28123966 28123894 5.770000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G218600 chr1B 395966498 395969718 3220 False 5949.0 5949 100.0000 1 3221 1 chr1B.!!$F1 3220
1 TraesCS1B01G218600 chr1D 294219029 294221560 2531 False 1855.5 3587 95.3735 752 3221 2 chr1D.!!$F1 2469
2 TraesCS1B01G218600 chr1A 367010155 367012457 2302 False 1666.5 3055 94.7275 816 3201 2 chr1A.!!$F1 2385
3 TraesCS1B01G218600 chr7D 45663323 45664396 1073 False 649.0 649 77.8690 1055 2140 1 chr7D.!!$F1 1085
4 TraesCS1B01G218600 chr4A 657518828 657519623 795 True 497.0 497 78.1800 1348 2140 1 chr4A.!!$R1 792
5 TraesCS1B01G218600 chr4A 658239345 658240140 795 False 470.0 470 77.5560 1348 2140 1 chr4A.!!$F1 792

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
257 258 0.244994 GCCACAGAGACACACGAGAT 59.755 55.0 0.00 0.0 0.00 2.75 F
935 937 0.319040 CTCAGGACACAGTGACCACG 60.319 60.0 22.05 13.4 34.63 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2142 2159 0.179094 TGGATGTCGTACATTCGGCC 60.179 55.0 0.0 0.0 39.27 6.13 R
2791 2821 0.106419 TGTGGTTCAGTGTTTCCCCC 60.106 55.0 0.0 0.0 0.00 5.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 9.612066 AAAAAGATTTGATTTGCCTGTCTAAAA 57.388 25.926 0.00 0.00 0.00 1.52
56 57 9.612066 AAAAGATTTGATTTGCCTGTCTAAAAA 57.388 25.926 0.00 0.00 0.00 1.94
82 83 8.757982 ATCTGACATTTGCTGAATATTTAGGT 57.242 30.769 9.11 0.00 0.00 3.08
83 84 8.213518 TCTGACATTTGCTGAATATTTAGGTC 57.786 34.615 9.11 7.68 0.00 3.85
84 85 7.283127 TCTGACATTTGCTGAATATTTAGGTCC 59.717 37.037 9.11 0.00 0.00 4.46
85 86 7.118723 TGACATTTGCTGAATATTTAGGTCCT 58.881 34.615 9.11 0.00 0.00 3.85
86 87 8.271458 TGACATTTGCTGAATATTTAGGTCCTA 58.729 33.333 9.11 0.00 0.00 2.94
87 88 9.120538 GACATTTGCTGAATATTTAGGTCCTAA 57.879 33.333 7.29 7.29 0.00 2.69
88 89 8.903820 ACATTTGCTGAATATTTAGGTCCTAAC 58.096 33.333 11.09 0.32 0.00 2.34
89 90 9.125026 CATTTGCTGAATATTTAGGTCCTAACT 57.875 33.333 11.09 8.68 0.00 2.24
90 91 8.732746 TTTGCTGAATATTTAGGTCCTAACTC 57.267 34.615 11.09 6.57 0.00 3.01
91 92 7.676683 TGCTGAATATTTAGGTCCTAACTCT 57.323 36.000 11.09 2.32 0.00 3.24
92 93 7.500992 TGCTGAATATTTAGGTCCTAACTCTG 58.499 38.462 11.09 10.07 0.00 3.35
93 94 6.425417 GCTGAATATTTAGGTCCTAACTCTGC 59.575 42.308 11.09 14.80 0.00 4.26
94 95 7.432148 TGAATATTTAGGTCCTAACTCTGCA 57.568 36.000 11.09 1.26 0.00 4.41
95 96 8.034313 TGAATATTTAGGTCCTAACTCTGCAT 57.966 34.615 11.09 3.94 0.00 3.96
96 97 8.150945 TGAATATTTAGGTCCTAACTCTGCATC 58.849 37.037 11.09 4.85 0.00 3.91
97 98 7.863901 ATATTTAGGTCCTAACTCTGCATCT 57.136 36.000 11.09 0.00 0.00 2.90
98 99 8.958060 ATATTTAGGTCCTAACTCTGCATCTA 57.042 34.615 11.09 0.00 0.00 1.98
99 100 7.676683 ATTTAGGTCCTAACTCTGCATCTAA 57.323 36.000 11.09 0.00 0.00 2.10
100 101 6.466885 TTAGGTCCTAACTCTGCATCTAAC 57.533 41.667 7.29 0.00 0.00 2.34
101 102 4.615513 AGGTCCTAACTCTGCATCTAACT 58.384 43.478 0.00 0.00 0.00 2.24
102 103 5.767670 AGGTCCTAACTCTGCATCTAACTA 58.232 41.667 0.00 0.00 0.00 2.24
103 104 5.595133 AGGTCCTAACTCTGCATCTAACTAC 59.405 44.000 0.00 0.00 0.00 2.73
104 105 5.595133 GGTCCTAACTCTGCATCTAACTACT 59.405 44.000 0.00 0.00 0.00 2.57
105 106 6.771749 GGTCCTAACTCTGCATCTAACTACTA 59.228 42.308 0.00 0.00 0.00 1.82
106 107 7.284944 GGTCCTAACTCTGCATCTAACTACTAA 59.715 40.741 0.00 0.00 0.00 2.24
107 108 8.684520 GTCCTAACTCTGCATCTAACTACTAAA 58.315 37.037 0.00 0.00 0.00 1.85
108 109 9.251440 TCCTAACTCTGCATCTAACTACTAAAA 57.749 33.333 0.00 0.00 0.00 1.52
109 110 9.871238 CCTAACTCTGCATCTAACTACTAAAAA 57.129 33.333 0.00 0.00 0.00 1.94
131 132 8.545229 AAAAATTCAACAGACAACACATCAAA 57.455 26.923 0.00 0.00 0.00 2.69
132 133 7.524294 AAATTCAACAGACAACACATCAAAC 57.476 32.000 0.00 0.00 0.00 2.93
133 134 5.895636 TTCAACAGACAACACATCAAACT 57.104 34.783 0.00 0.00 0.00 2.66
134 135 6.993786 TTCAACAGACAACACATCAAACTA 57.006 33.333 0.00 0.00 0.00 2.24
135 136 7.566760 TTCAACAGACAACACATCAAACTAT 57.433 32.000 0.00 0.00 0.00 2.12
136 137 7.566760 TCAACAGACAACACATCAAACTATT 57.433 32.000 0.00 0.00 0.00 1.73
137 138 7.995289 TCAACAGACAACACATCAAACTATTT 58.005 30.769 0.00 0.00 0.00 1.40
138 139 9.114952 TCAACAGACAACACATCAAACTATTTA 57.885 29.630 0.00 0.00 0.00 1.40
139 140 9.897744 CAACAGACAACACATCAAACTATTTAT 57.102 29.630 0.00 0.00 0.00 1.40
141 142 9.507329 ACAGACAACACATCAAACTATTTATCT 57.493 29.630 0.00 0.00 0.00 1.98
144 145 9.478019 GACAACACATCAAACTATTTATCTTCG 57.522 33.333 0.00 0.00 0.00 3.79
145 146 8.999431 ACAACACATCAAACTATTTATCTTCGT 58.001 29.630 0.00 0.00 0.00 3.85
146 147 9.478019 CAACACATCAAACTATTTATCTTCGTC 57.522 33.333 0.00 0.00 0.00 4.20
147 148 8.771920 ACACATCAAACTATTTATCTTCGTCA 57.228 30.769 0.00 0.00 0.00 4.35
148 149 9.383519 ACACATCAAACTATTTATCTTCGTCAT 57.616 29.630 0.00 0.00 0.00 3.06
227 228 5.117355 TCGAGATATCGATACCACCAAAC 57.883 43.478 8.65 0.00 37.20 2.93
228 229 4.581409 TCGAGATATCGATACCACCAAACA 59.419 41.667 8.65 0.00 37.20 2.83
229 230 5.068067 TCGAGATATCGATACCACCAAACAA 59.932 40.000 8.65 0.00 37.20 2.83
230 231 5.175126 CGAGATATCGATACCACCAAACAAC 59.825 44.000 7.41 0.00 34.64 3.32
231 232 5.365619 AGATATCGATACCACCAAACAACC 58.634 41.667 7.41 0.00 0.00 3.77
232 233 2.932855 TCGATACCACCAAACAACCA 57.067 45.000 0.00 0.00 0.00 3.67
233 234 2.496111 TCGATACCACCAAACAACCAC 58.504 47.619 0.00 0.00 0.00 4.16
234 235 2.105134 TCGATACCACCAAACAACCACT 59.895 45.455 0.00 0.00 0.00 4.00
235 236 3.324268 TCGATACCACCAAACAACCACTA 59.676 43.478 0.00 0.00 0.00 2.74
236 237 3.434299 CGATACCACCAAACAACCACTAC 59.566 47.826 0.00 0.00 0.00 2.73
237 238 4.648651 GATACCACCAAACAACCACTACT 58.351 43.478 0.00 0.00 0.00 2.57
238 239 2.650322 ACCACCAAACAACCACTACTG 58.350 47.619 0.00 0.00 0.00 2.74
239 240 1.336755 CCACCAAACAACCACTACTGC 59.663 52.381 0.00 0.00 0.00 4.40
240 241 1.336755 CACCAAACAACCACTACTGCC 59.663 52.381 0.00 0.00 0.00 4.85
241 242 1.064314 ACCAAACAACCACTACTGCCA 60.064 47.619 0.00 0.00 0.00 4.92
242 243 1.336755 CCAAACAACCACTACTGCCAC 59.663 52.381 0.00 0.00 0.00 5.01
243 244 2.020720 CAAACAACCACTACTGCCACA 58.979 47.619 0.00 0.00 0.00 4.17
244 245 1.967319 AACAACCACTACTGCCACAG 58.033 50.000 0.00 0.00 37.52 3.66
245 246 1.128200 ACAACCACTACTGCCACAGA 58.872 50.000 0.78 0.00 35.18 3.41
246 247 1.070758 ACAACCACTACTGCCACAGAG 59.929 52.381 0.78 0.00 35.18 3.35
247 248 1.344438 CAACCACTACTGCCACAGAGA 59.656 52.381 0.78 0.00 35.18 3.10
248 249 0.969894 ACCACTACTGCCACAGAGAC 59.030 55.000 0.78 0.00 35.18 3.36
249 250 0.969149 CCACTACTGCCACAGAGACA 59.031 55.000 0.78 0.00 35.18 3.41
250 251 1.337260 CCACTACTGCCACAGAGACAC 60.337 57.143 0.78 0.00 35.18 3.67
251 252 1.341209 CACTACTGCCACAGAGACACA 59.659 52.381 0.78 0.00 35.18 3.72
252 253 1.341531 ACTACTGCCACAGAGACACAC 59.658 52.381 0.78 0.00 35.18 3.82
253 254 0.313987 TACTGCCACAGAGACACACG 59.686 55.000 0.78 0.00 35.18 4.49
254 255 1.363807 CTGCCACAGAGACACACGA 59.636 57.895 0.00 0.00 32.44 4.35
255 256 0.665670 CTGCCACAGAGACACACGAG 60.666 60.000 0.00 0.00 32.44 4.18
256 257 1.106944 TGCCACAGAGACACACGAGA 61.107 55.000 0.00 0.00 0.00 4.04
257 258 0.244994 GCCACAGAGACACACGAGAT 59.755 55.000 0.00 0.00 0.00 2.75
258 259 1.988063 CCACAGAGACACACGAGATG 58.012 55.000 0.00 0.00 0.00 2.90
259 260 1.270826 CCACAGAGACACACGAGATGT 59.729 52.381 0.00 0.00 44.81 3.06
260 261 2.488153 CCACAGAGACACACGAGATGTA 59.512 50.000 0.00 0.00 40.64 2.29
261 262 3.129462 CCACAGAGACACACGAGATGTAT 59.871 47.826 0.00 0.00 40.64 2.29
262 263 4.380973 CCACAGAGACACACGAGATGTATT 60.381 45.833 0.00 0.00 40.64 1.89
263 264 5.164233 CACAGAGACACACGAGATGTATTT 58.836 41.667 0.00 0.00 40.64 1.40
264 265 5.635280 CACAGAGACACACGAGATGTATTTT 59.365 40.000 0.00 0.00 40.64 1.82
265 266 6.146184 CACAGAGACACACGAGATGTATTTTT 59.854 38.462 0.00 0.00 40.64 1.94
305 306 8.684386 TTTTGTACTACCTTGACAATTGATGA 57.316 30.769 13.59 0.00 33.33 2.92
306 307 8.684386 TTTGTACTACCTTGACAATTGATGAA 57.316 30.769 13.59 0.64 33.33 2.57
307 308 8.862325 TTGTACTACCTTGACAATTGATGAAT 57.138 30.769 13.59 0.00 0.00 2.57
308 309 9.952030 TTGTACTACCTTGACAATTGATGAATA 57.048 29.630 13.59 0.00 0.00 1.75
309 310 9.599866 TGTACTACCTTGACAATTGATGAATAG 57.400 33.333 13.59 8.74 0.00 1.73
310 311 9.046296 GTACTACCTTGACAATTGATGAATAGG 57.954 37.037 13.59 11.34 32.88 2.57
311 312 5.841957 ACCTTGACAATTGATGAATAGGC 57.158 39.130 13.59 0.00 31.11 3.93
312 313 4.646492 ACCTTGACAATTGATGAATAGGCC 59.354 41.667 13.59 0.00 31.11 5.19
313 314 4.261322 CCTTGACAATTGATGAATAGGCCG 60.261 45.833 13.59 0.00 0.00 6.13
314 315 3.213506 TGACAATTGATGAATAGGCCGG 58.786 45.455 13.59 0.00 0.00 6.13
315 316 3.118075 TGACAATTGATGAATAGGCCGGA 60.118 43.478 13.59 0.00 0.00 5.14
316 317 3.882888 GACAATTGATGAATAGGCCGGAA 59.117 43.478 13.59 0.00 0.00 4.30
317 318 3.885297 ACAATTGATGAATAGGCCGGAAG 59.115 43.478 13.59 0.00 0.00 3.46
318 319 3.864789 ATTGATGAATAGGCCGGAAGT 57.135 42.857 5.05 0.00 0.00 3.01
319 320 3.644966 TTGATGAATAGGCCGGAAGTT 57.355 42.857 5.05 0.00 0.00 2.66
320 321 3.644966 TGATGAATAGGCCGGAAGTTT 57.355 42.857 5.05 0.00 0.00 2.66
321 322 3.963129 TGATGAATAGGCCGGAAGTTTT 58.037 40.909 5.05 0.00 0.00 2.43
322 323 3.945285 TGATGAATAGGCCGGAAGTTTTC 59.055 43.478 5.05 1.35 0.00 2.29
323 324 2.718563 TGAATAGGCCGGAAGTTTTCC 58.281 47.619 5.05 0.00 46.62 3.13
361 362 9.088987 AGTTGAAAATAATGTACTCCCAATTGT 57.911 29.630 4.43 0.00 0.00 2.71
371 372 7.727578 TGTACTCCCAATTGTATCTAAGACA 57.272 36.000 4.43 0.00 0.00 3.41
372 373 7.782049 TGTACTCCCAATTGTATCTAAGACAG 58.218 38.462 4.43 0.00 0.00 3.51
373 374 6.240549 ACTCCCAATTGTATCTAAGACAGG 57.759 41.667 4.43 0.00 0.00 4.00
374 375 5.964477 ACTCCCAATTGTATCTAAGACAGGA 59.036 40.000 4.43 0.00 0.00 3.86
375 376 6.443849 ACTCCCAATTGTATCTAAGACAGGAA 59.556 38.462 4.43 0.00 0.00 3.36
376 377 7.037586 ACTCCCAATTGTATCTAAGACAGGAAA 60.038 37.037 4.43 0.00 0.00 3.13
377 378 7.695055 TCCCAATTGTATCTAAGACAGGAAAA 58.305 34.615 4.43 0.00 0.00 2.29
378 379 8.167392 TCCCAATTGTATCTAAGACAGGAAAAA 58.833 33.333 4.43 0.00 0.00 1.94
379 380 8.462016 CCCAATTGTATCTAAGACAGGAAAAAG 58.538 37.037 4.43 0.00 0.00 2.27
380 381 8.462016 CCAATTGTATCTAAGACAGGAAAAAGG 58.538 37.037 4.43 0.00 0.00 3.11
381 382 7.631717 ATTGTATCTAAGACAGGAAAAAGGC 57.368 36.000 0.00 0.00 0.00 4.35
382 383 5.175859 TGTATCTAAGACAGGAAAAAGGCG 58.824 41.667 0.00 0.00 0.00 5.52
383 384 3.053831 TCTAAGACAGGAAAAAGGCGG 57.946 47.619 0.00 0.00 0.00 6.13
384 385 2.370849 TCTAAGACAGGAAAAAGGCGGT 59.629 45.455 0.00 0.00 0.00 5.68
385 386 2.943036 AAGACAGGAAAAAGGCGGTA 57.057 45.000 0.00 0.00 0.00 4.02
386 387 3.434940 AAGACAGGAAAAAGGCGGTAT 57.565 42.857 0.00 0.00 0.00 2.73
387 388 3.434940 AGACAGGAAAAAGGCGGTATT 57.565 42.857 0.00 0.00 0.00 1.89
388 389 3.763057 AGACAGGAAAAAGGCGGTATTT 58.237 40.909 0.00 0.00 0.00 1.40
389 390 4.149598 AGACAGGAAAAAGGCGGTATTTT 58.850 39.130 0.00 0.00 0.00 1.82
390 391 4.022329 AGACAGGAAAAAGGCGGTATTTTG 60.022 41.667 0.00 0.00 30.52 2.44
391 392 3.006430 ACAGGAAAAAGGCGGTATTTTGG 59.994 43.478 0.00 0.00 30.52 3.28
392 393 3.006430 CAGGAAAAAGGCGGTATTTTGGT 59.994 43.478 0.00 0.00 30.52 3.67
393 394 3.644265 AGGAAAAAGGCGGTATTTTGGTT 59.356 39.130 0.00 0.00 30.52 3.67
394 395 4.101898 AGGAAAAAGGCGGTATTTTGGTTT 59.898 37.500 0.00 0.00 30.52 3.27
395 396 5.304871 AGGAAAAAGGCGGTATTTTGGTTTA 59.695 36.000 0.00 0.00 30.52 2.01
396 397 5.636121 GGAAAAAGGCGGTATTTTGGTTTAG 59.364 40.000 0.00 0.00 30.52 1.85
397 398 3.861276 AAGGCGGTATTTTGGTTTAGC 57.139 42.857 0.00 0.00 0.00 3.09
398 399 2.797786 AGGCGGTATTTTGGTTTAGCA 58.202 42.857 0.00 0.00 0.00 3.49
399 400 3.158676 AGGCGGTATTTTGGTTTAGCAA 58.841 40.909 0.00 0.00 0.00 3.91
400 401 3.574826 AGGCGGTATTTTGGTTTAGCAAA 59.425 39.130 3.18 3.18 0.00 3.68
401 402 3.924073 GGCGGTATTTTGGTTTAGCAAAG 59.076 43.478 7.12 0.00 0.00 2.77
402 403 4.552355 GCGGTATTTTGGTTTAGCAAAGT 58.448 39.130 7.12 7.27 0.00 2.66
403 404 5.335819 GGCGGTATTTTGGTTTAGCAAAGTA 60.336 40.000 7.12 6.41 0.00 2.24
404 405 6.327154 GCGGTATTTTGGTTTAGCAAAGTAT 58.673 36.000 11.15 5.34 0.00 2.12
405 406 7.415429 GGCGGTATTTTGGTTTAGCAAAGTATA 60.415 37.037 11.15 4.58 0.00 1.47
406 407 7.430211 GCGGTATTTTGGTTTAGCAAAGTATAC 59.570 37.037 14.75 14.75 0.00 1.47
407 408 8.452534 CGGTATTTTGGTTTAGCAAAGTATACA 58.547 33.333 19.96 4.94 0.00 2.29
408 409 9.783256 GGTATTTTGGTTTAGCAAAGTATACAG 57.217 33.333 19.96 0.00 0.00 2.74
411 412 6.715344 TTGGTTTAGCAAAGTATACAGACG 57.285 37.500 5.50 0.00 0.00 4.18
412 413 4.628333 TGGTTTAGCAAAGTATACAGACGC 59.372 41.667 5.50 2.27 0.00 5.19
413 414 4.628333 GGTTTAGCAAAGTATACAGACGCA 59.372 41.667 5.50 0.00 0.00 5.24
414 415 5.293569 GGTTTAGCAAAGTATACAGACGCAT 59.706 40.000 5.50 0.00 0.00 4.73
415 416 6.477688 GGTTTAGCAAAGTATACAGACGCATA 59.522 38.462 5.50 0.00 0.00 3.14
416 417 7.335491 GTTTAGCAAAGTATACAGACGCATAC 58.665 38.462 5.50 0.00 0.00 2.39
417 418 5.006153 AGCAAAGTATACAGACGCATACA 57.994 39.130 5.50 0.00 31.33 2.29
418 419 4.804139 AGCAAAGTATACAGACGCATACAC 59.196 41.667 5.50 0.00 31.33 2.90
419 420 4.804139 GCAAAGTATACAGACGCATACACT 59.196 41.667 5.50 0.00 31.33 3.55
420 421 5.051641 GCAAAGTATACAGACGCATACACTC 60.052 44.000 5.50 0.00 31.33 3.51
421 422 5.830000 AAGTATACAGACGCATACACTCA 57.170 39.130 5.50 0.00 31.33 3.41
422 423 6.392625 AAGTATACAGACGCATACACTCAT 57.607 37.500 5.50 0.00 31.33 2.90
423 424 7.506328 AAGTATACAGACGCATACACTCATA 57.494 36.000 5.50 0.00 31.33 2.15
424 425 7.689446 AGTATACAGACGCATACACTCATAT 57.311 36.000 5.50 0.00 31.33 1.78
425 426 8.788325 AGTATACAGACGCATACACTCATATA 57.212 34.615 5.50 0.00 31.33 0.86
426 427 9.397280 AGTATACAGACGCATACACTCATATAT 57.603 33.333 5.50 0.00 31.33 0.86
431 432 9.174166 ACAGACGCATACACTCATATATATACA 57.826 33.333 0.00 0.00 0.00 2.29
434 435 8.803201 ACGCATACACTCATATATATACATGC 57.197 34.615 0.00 4.28 33.47 4.06
435 436 8.413229 ACGCATACACTCATATATATACATGCA 58.587 33.333 15.27 0.00 35.87 3.96
436 437 9.415544 CGCATACACTCATATATATACATGCAT 57.584 33.333 0.00 0.00 35.87 3.96
465 466 9.758651 ACTTATCTTTATGAATATACACACGCA 57.241 29.630 0.00 0.00 0.00 5.24
467 468 6.505039 TCTTTATGAATATACACACGCACG 57.495 37.500 0.00 0.00 0.00 5.34
468 469 6.037726 TCTTTATGAATATACACACGCACGT 58.962 36.000 0.00 0.00 0.00 4.49
481 482 3.196007 ACGCACGTGAACCAAATTATG 57.804 42.857 22.23 0.00 0.00 1.90
501 502 9.707957 AATTATGGTTGGATAGTTAAATGGACA 57.292 29.630 0.00 0.00 0.00 4.02
502 503 9.707957 ATTATGGTTGGATAGTTAAATGGACAA 57.292 29.630 0.00 0.00 0.00 3.18
503 504 9.707957 TTATGGTTGGATAGTTAAATGGACAAT 57.292 29.630 0.00 0.00 0.00 2.71
504 505 7.403312 TGGTTGGATAGTTAAATGGACAATG 57.597 36.000 0.00 0.00 0.00 2.82
505 506 6.379703 TGGTTGGATAGTTAAATGGACAATGG 59.620 38.462 0.00 0.00 0.00 3.16
506 507 6.379988 GGTTGGATAGTTAAATGGACAATGGT 59.620 38.462 0.00 0.00 0.00 3.55
507 508 7.558444 GGTTGGATAGTTAAATGGACAATGGTA 59.442 37.037 0.00 0.00 0.00 3.25
508 509 9.131791 GTTGGATAGTTAAATGGACAATGGTAT 57.868 33.333 0.00 0.00 0.00 2.73
509 510 8.918202 TGGATAGTTAAATGGACAATGGTATC 57.082 34.615 0.00 0.00 0.00 2.24
510 511 7.942341 TGGATAGTTAAATGGACAATGGTATCC 59.058 37.037 0.00 0.00 34.99 2.59
511 512 8.164070 GGATAGTTAAATGGACAATGGTATCCT 58.836 37.037 0.00 0.00 35.86 3.24
512 513 9.220767 GATAGTTAAATGGACAATGGTATCCTC 57.779 37.037 0.00 0.00 35.86 3.71
513 514 6.969043 AGTTAAATGGACAATGGTATCCTCA 58.031 36.000 0.00 0.00 35.86 3.86
514 515 7.410174 AGTTAAATGGACAATGGTATCCTCAA 58.590 34.615 0.00 0.00 35.86 3.02
515 516 7.339466 AGTTAAATGGACAATGGTATCCTCAAC 59.661 37.037 0.00 0.00 35.86 3.18
516 517 3.644966 TGGACAATGGTATCCTCAACC 57.355 47.619 0.00 0.00 35.86 3.77
517 518 2.241176 TGGACAATGGTATCCTCAACCC 59.759 50.000 0.00 0.00 36.06 4.11
518 519 2.241176 GGACAATGGTATCCTCAACCCA 59.759 50.000 0.00 0.00 36.06 4.51
519 520 3.279434 GACAATGGTATCCTCAACCCAC 58.721 50.000 0.00 0.00 36.06 4.61
520 521 2.025321 ACAATGGTATCCTCAACCCACC 60.025 50.000 0.00 0.00 36.06 4.61
521 522 1.979809 ATGGTATCCTCAACCCACCA 58.020 50.000 0.00 0.00 43.10 4.17
522 523 1.748732 TGGTATCCTCAACCCACCAA 58.251 50.000 0.00 0.00 36.36 3.67
523 524 1.633432 TGGTATCCTCAACCCACCAAG 59.367 52.381 0.00 0.00 36.36 3.61
524 525 1.913419 GGTATCCTCAACCCACCAAGA 59.087 52.381 0.00 0.00 0.00 3.02
525 526 2.509964 GGTATCCTCAACCCACCAAGAT 59.490 50.000 0.00 0.00 0.00 2.40
526 527 3.053619 GGTATCCTCAACCCACCAAGATT 60.054 47.826 0.00 0.00 0.00 2.40
527 528 3.833559 ATCCTCAACCCACCAAGATTT 57.166 42.857 0.00 0.00 0.00 2.17
528 529 4.946160 ATCCTCAACCCACCAAGATTTA 57.054 40.909 0.00 0.00 0.00 1.40
529 530 4.733077 TCCTCAACCCACCAAGATTTAA 57.267 40.909 0.00 0.00 0.00 1.52
530 531 4.662278 TCCTCAACCCACCAAGATTTAAG 58.338 43.478 0.00 0.00 0.00 1.85
531 532 4.105697 TCCTCAACCCACCAAGATTTAAGT 59.894 41.667 0.00 0.00 0.00 2.24
532 533 4.832823 CCTCAACCCACCAAGATTTAAGTT 59.167 41.667 0.00 0.00 0.00 2.66
533 534 5.048013 CCTCAACCCACCAAGATTTAAGTTC 60.048 44.000 0.00 0.00 0.00 3.01
534 535 4.517453 TCAACCCACCAAGATTTAAGTTCG 59.483 41.667 0.00 0.00 0.00 3.95
535 536 3.418047 ACCCACCAAGATTTAAGTTCGG 58.582 45.455 0.00 0.00 0.00 4.30
536 537 2.752903 CCCACCAAGATTTAAGTTCGGG 59.247 50.000 0.00 0.00 0.00 5.14
537 538 3.418047 CCACCAAGATTTAAGTTCGGGT 58.582 45.455 0.00 0.00 0.00 5.28
538 539 3.190535 CCACCAAGATTTAAGTTCGGGTG 59.809 47.826 17.69 17.69 40.29 4.61
539 540 3.818773 CACCAAGATTTAAGTTCGGGTGT 59.181 43.478 17.03 0.00 38.01 4.16
540 541 4.277423 CACCAAGATTTAAGTTCGGGTGTT 59.723 41.667 17.03 0.00 38.01 3.32
541 542 4.517832 ACCAAGATTTAAGTTCGGGTGTTC 59.482 41.667 0.00 0.00 0.00 3.18
542 543 4.378046 CCAAGATTTAAGTTCGGGTGTTCG 60.378 45.833 0.00 0.00 0.00 3.95
543 544 2.740447 AGATTTAAGTTCGGGTGTTCGC 59.260 45.455 0.00 0.00 0.00 4.70
544 545 1.950828 TTTAAGTTCGGGTGTTCGCA 58.049 45.000 0.00 0.00 0.00 5.10
545 546 2.172851 TTAAGTTCGGGTGTTCGCAT 57.827 45.000 0.00 0.00 0.00 4.73
546 547 2.172851 TAAGTTCGGGTGTTCGCATT 57.827 45.000 0.00 0.00 0.00 3.56
547 548 1.314730 AAGTTCGGGTGTTCGCATTT 58.685 45.000 0.00 0.00 0.00 2.32
548 549 0.872388 AGTTCGGGTGTTCGCATTTC 59.128 50.000 0.00 0.00 0.00 2.17
549 550 0.872388 GTTCGGGTGTTCGCATTTCT 59.128 50.000 0.00 0.00 0.00 2.52
550 551 1.265905 GTTCGGGTGTTCGCATTTCTT 59.734 47.619 0.00 0.00 0.00 2.52
551 552 1.600023 TCGGGTGTTCGCATTTCTTT 58.400 45.000 0.00 0.00 0.00 2.52
552 553 1.950909 TCGGGTGTTCGCATTTCTTTT 59.049 42.857 0.00 0.00 0.00 2.27
553 554 2.050691 CGGGTGTTCGCATTTCTTTTG 58.949 47.619 0.00 0.00 0.00 2.44
554 555 2.403259 GGGTGTTCGCATTTCTTTTGG 58.597 47.619 0.00 0.00 0.00 3.28
555 556 2.223947 GGGTGTTCGCATTTCTTTTGGT 60.224 45.455 0.00 0.00 0.00 3.67
556 557 3.453424 GGTGTTCGCATTTCTTTTGGTT 58.547 40.909 0.00 0.00 0.00 3.67
557 558 3.868661 GGTGTTCGCATTTCTTTTGGTTT 59.131 39.130 0.00 0.00 0.00 3.27
558 559 4.331443 GGTGTTCGCATTTCTTTTGGTTTT 59.669 37.500 0.00 0.00 0.00 2.43
559 560 5.520649 GGTGTTCGCATTTCTTTTGGTTTTA 59.479 36.000 0.00 0.00 0.00 1.52
560 561 6.201997 GGTGTTCGCATTTCTTTTGGTTTTAT 59.798 34.615 0.00 0.00 0.00 1.40
561 562 7.254624 GGTGTTCGCATTTCTTTTGGTTTTATT 60.255 33.333 0.00 0.00 0.00 1.40
562 563 8.119845 GTGTTCGCATTTCTTTTGGTTTTATTT 58.880 29.630 0.00 0.00 0.00 1.40
563 564 8.669243 TGTTCGCATTTCTTTTGGTTTTATTTT 58.331 25.926 0.00 0.00 0.00 1.82
564 565 9.497030 GTTCGCATTTCTTTTGGTTTTATTTTT 57.503 25.926 0.00 0.00 0.00 1.94
565 566 9.709600 TTCGCATTTCTTTTGGTTTTATTTTTC 57.290 25.926 0.00 0.00 0.00 2.29
566 567 8.883731 TCGCATTTCTTTTGGTTTTATTTTTCA 58.116 25.926 0.00 0.00 0.00 2.69
567 568 9.157259 CGCATTTCTTTTGGTTTTATTTTTCAG 57.843 29.630 0.00 0.00 0.00 3.02
568 569 9.449550 GCATTTCTTTTGGTTTTATTTTTCAGG 57.550 29.630 0.00 0.00 0.00 3.86
576 577 8.900983 TTGGTTTTATTTTTCAGGATTTCTGG 57.099 30.769 0.00 0.00 43.53 3.86
577 578 6.934083 TGGTTTTATTTTTCAGGATTTCTGGC 59.066 34.615 0.00 0.00 43.53 4.85
578 579 6.090763 GGTTTTATTTTTCAGGATTTCTGGCG 59.909 38.462 0.00 0.00 43.53 5.69
579 580 6.582677 TTTATTTTTCAGGATTTCTGGCGA 57.417 33.333 0.00 0.00 43.53 5.54
580 581 6.773976 TTATTTTTCAGGATTTCTGGCGAT 57.226 33.333 0.00 0.00 43.53 4.58
581 582 5.665916 ATTTTTCAGGATTTCTGGCGATT 57.334 34.783 0.00 0.00 43.53 3.34
582 583 4.701956 TTTTCAGGATTTCTGGCGATTC 57.298 40.909 0.00 0.00 43.53 2.52
583 584 1.939974 TCAGGATTTCTGGCGATTCG 58.060 50.000 0.62 0.62 43.53 3.34
602 603 4.903638 TCGCGTTTAGTGAAAGAAGATG 57.096 40.909 5.77 0.00 36.26 2.90
603 604 4.552355 TCGCGTTTAGTGAAAGAAGATGA 58.448 39.130 5.77 0.00 36.26 2.92
604 605 4.986034 TCGCGTTTAGTGAAAGAAGATGAA 59.014 37.500 5.77 0.00 36.26 2.57
605 606 5.073478 CGCGTTTAGTGAAAGAAGATGAAC 58.927 41.667 0.00 0.00 0.00 3.18
606 607 5.107453 CGCGTTTAGTGAAAGAAGATGAACT 60.107 40.000 0.00 0.00 0.00 3.01
607 608 6.564125 CGCGTTTAGTGAAAGAAGATGAACTT 60.564 38.462 0.00 0.00 42.03 2.66
619 620 5.840940 AAGATGAACTTCGTAAAACCTCG 57.159 39.130 0.00 0.00 32.91 4.63
620 621 5.130292 AGATGAACTTCGTAAAACCTCGA 57.870 39.130 0.00 0.00 0.00 4.04
621 622 5.535333 AGATGAACTTCGTAAAACCTCGAA 58.465 37.500 0.00 0.00 42.41 3.71
622 623 5.987347 AGATGAACTTCGTAAAACCTCGAAA 59.013 36.000 0.00 0.00 43.61 3.46
623 624 6.649557 AGATGAACTTCGTAAAACCTCGAAAT 59.350 34.615 0.00 0.00 43.61 2.17
624 625 5.981174 TGAACTTCGTAAAACCTCGAAATG 58.019 37.500 0.00 0.00 43.61 2.32
625 626 5.754406 TGAACTTCGTAAAACCTCGAAATGA 59.246 36.000 0.00 0.00 43.61 2.57
626 627 6.425721 TGAACTTCGTAAAACCTCGAAATGAT 59.574 34.615 0.00 0.00 43.61 2.45
627 628 7.599621 TGAACTTCGTAAAACCTCGAAATGATA 59.400 33.333 0.00 0.00 43.61 2.15
628 629 8.488651 AACTTCGTAAAACCTCGAAATGATAT 57.511 30.769 0.00 0.00 43.61 1.63
629 630 7.906160 ACTTCGTAAAACCTCGAAATGATATG 58.094 34.615 0.00 0.00 43.61 1.78
630 631 6.281848 TCGTAAAACCTCGAAATGATATGC 57.718 37.500 0.00 0.00 33.13 3.14
631 632 5.235616 TCGTAAAACCTCGAAATGATATGCC 59.764 40.000 0.00 0.00 33.13 4.40
632 633 5.007234 CGTAAAACCTCGAAATGATATGCCA 59.993 40.000 0.00 0.00 0.00 4.92
633 634 5.913137 AAAACCTCGAAATGATATGCCAA 57.087 34.783 0.00 0.00 0.00 4.52
634 635 4.900635 AACCTCGAAATGATATGCCAAC 57.099 40.909 0.00 0.00 0.00 3.77
635 636 4.156455 ACCTCGAAATGATATGCCAACT 57.844 40.909 0.00 0.00 0.00 3.16
636 637 4.130118 ACCTCGAAATGATATGCCAACTC 58.870 43.478 0.00 0.00 0.00 3.01
637 638 4.129380 CCTCGAAATGATATGCCAACTCA 58.871 43.478 0.00 0.00 0.00 3.41
638 639 4.024556 CCTCGAAATGATATGCCAACTCAC 60.025 45.833 0.00 0.00 0.00 3.51
639 640 4.769688 TCGAAATGATATGCCAACTCACT 58.230 39.130 0.00 0.00 0.00 3.41
640 641 4.811024 TCGAAATGATATGCCAACTCACTC 59.189 41.667 0.00 0.00 0.00 3.51
641 642 4.318333 CGAAATGATATGCCAACTCACTCG 60.318 45.833 0.00 0.00 0.00 4.18
642 643 4.406648 AATGATATGCCAACTCACTCGA 57.593 40.909 0.00 0.00 0.00 4.04
643 644 3.885724 TGATATGCCAACTCACTCGAA 57.114 42.857 0.00 0.00 0.00 3.71
644 645 3.785486 TGATATGCCAACTCACTCGAAG 58.215 45.455 0.00 0.00 0.00 3.79
645 646 3.447229 TGATATGCCAACTCACTCGAAGA 59.553 43.478 0.00 0.00 0.00 2.87
646 647 4.100035 TGATATGCCAACTCACTCGAAGAT 59.900 41.667 0.00 0.00 33.89 2.40
647 648 2.084610 TGCCAACTCACTCGAAGATG 57.915 50.000 0.00 0.00 33.89 2.90
648 649 0.723981 GCCAACTCACTCGAAGATGC 59.276 55.000 0.00 0.00 33.89 3.91
649 650 0.994995 CCAACTCACTCGAAGATGCG 59.005 55.000 0.00 0.00 33.89 4.73
650 651 0.994995 CAACTCACTCGAAGATGCGG 59.005 55.000 0.00 0.00 33.89 5.69
651 652 0.888619 AACTCACTCGAAGATGCGGA 59.111 50.000 0.00 0.00 33.89 5.54
652 653 1.107114 ACTCACTCGAAGATGCGGAT 58.893 50.000 0.00 0.00 33.89 4.18
653 654 2.298610 ACTCACTCGAAGATGCGGATA 58.701 47.619 0.00 0.00 33.89 2.59
654 655 2.292016 ACTCACTCGAAGATGCGGATAG 59.708 50.000 0.00 0.00 33.89 2.08
655 656 1.609072 TCACTCGAAGATGCGGATAGG 59.391 52.381 0.00 0.00 33.89 2.57
656 657 0.962489 ACTCGAAGATGCGGATAGGG 59.038 55.000 0.00 0.00 33.89 3.53
657 658 0.962489 CTCGAAGATGCGGATAGGGT 59.038 55.000 0.00 0.00 33.89 4.34
658 659 0.673985 TCGAAGATGCGGATAGGGTG 59.326 55.000 0.00 0.00 0.00 4.61
659 660 0.389391 CGAAGATGCGGATAGGGTGT 59.611 55.000 0.00 0.00 0.00 4.16
660 661 1.611977 CGAAGATGCGGATAGGGTGTA 59.388 52.381 0.00 0.00 0.00 2.90
661 662 2.607282 CGAAGATGCGGATAGGGTGTAC 60.607 54.545 0.00 0.00 0.00 2.90
662 663 2.082140 AGATGCGGATAGGGTGTACA 57.918 50.000 0.00 0.00 0.00 2.90
663 664 2.609747 AGATGCGGATAGGGTGTACAT 58.390 47.619 0.00 0.00 0.00 2.29
664 665 2.300152 AGATGCGGATAGGGTGTACATG 59.700 50.000 0.00 0.00 0.00 3.21
665 666 1.491668 TGCGGATAGGGTGTACATGT 58.508 50.000 2.69 2.69 0.00 3.21
666 667 2.668625 TGCGGATAGGGTGTACATGTA 58.331 47.619 0.08 0.08 0.00 2.29
667 668 3.236047 TGCGGATAGGGTGTACATGTAT 58.764 45.455 9.18 0.00 0.00 2.29
668 669 3.006430 TGCGGATAGGGTGTACATGTATG 59.994 47.826 9.18 0.00 0.00 2.39
669 670 3.006537 GCGGATAGGGTGTACATGTATGT 59.993 47.826 9.18 2.75 44.48 2.29
670 671 4.806330 CGGATAGGGTGTACATGTATGTC 58.194 47.826 9.18 0.44 41.97 3.06
671 672 4.321750 CGGATAGGGTGTACATGTATGTCC 60.322 50.000 9.18 8.72 41.97 4.02
672 673 4.591498 GGATAGGGTGTACATGTATGTCCA 59.409 45.833 9.18 0.00 41.97 4.02
673 674 5.248477 GGATAGGGTGTACATGTATGTCCAT 59.752 44.000 9.18 11.54 41.97 3.41
674 675 6.439375 GGATAGGGTGTACATGTATGTCCATA 59.561 42.308 9.18 13.15 41.97 2.74
675 676 7.125811 GGATAGGGTGTACATGTATGTCCATAT 59.874 40.741 20.31 20.31 41.97 1.78
676 677 6.114187 AGGGTGTACATGTATGTCCATATG 57.886 41.667 9.18 0.00 41.97 1.78
677 678 5.843969 AGGGTGTACATGTATGTCCATATGA 59.156 40.000 9.18 0.00 41.97 2.15
678 679 6.014242 AGGGTGTACATGTATGTCCATATGAG 60.014 42.308 9.18 0.00 41.97 2.90
679 680 5.639506 GGTGTACATGTATGTCCATATGAGC 59.360 44.000 9.18 0.00 41.97 4.26
680 681 6.223120 GTGTACATGTATGTCCATATGAGCA 58.777 40.000 9.18 2.95 41.97 4.26
681 682 6.146184 GTGTACATGTATGTCCATATGAGCAC 59.854 42.308 9.18 3.98 41.97 4.40
682 683 5.557576 ACATGTATGTCCATATGAGCACT 57.442 39.130 3.65 0.00 35.87 4.40
683 684 5.933617 ACATGTATGTCCATATGAGCACTT 58.066 37.500 3.65 0.00 35.87 3.16
684 685 5.761726 ACATGTATGTCCATATGAGCACTTG 59.238 40.000 3.65 5.94 35.87 3.16
685 686 5.357742 TGTATGTCCATATGAGCACTTGT 57.642 39.130 3.65 0.00 0.00 3.16
686 687 6.478512 TGTATGTCCATATGAGCACTTGTA 57.521 37.500 3.65 0.00 0.00 2.41
687 688 7.066307 TGTATGTCCATATGAGCACTTGTAT 57.934 36.000 3.65 0.00 0.00 2.29
688 689 7.508687 TGTATGTCCATATGAGCACTTGTATT 58.491 34.615 3.65 0.00 0.00 1.89
689 690 7.992608 TGTATGTCCATATGAGCACTTGTATTT 59.007 33.333 3.65 0.00 0.00 1.40
690 691 6.682423 TGTCCATATGAGCACTTGTATTTG 57.318 37.500 3.65 0.00 0.00 2.32
691 692 6.179756 TGTCCATATGAGCACTTGTATTTGT 58.820 36.000 3.65 0.00 0.00 2.83
692 693 7.334858 TGTCCATATGAGCACTTGTATTTGTA 58.665 34.615 3.65 0.00 0.00 2.41
693 694 7.495606 TGTCCATATGAGCACTTGTATTTGTAG 59.504 37.037 3.65 0.00 0.00 2.74
694 695 7.495934 GTCCATATGAGCACTTGTATTTGTAGT 59.504 37.037 3.65 0.00 0.00 2.73
695 696 7.495606 TCCATATGAGCACTTGTATTTGTAGTG 59.504 37.037 3.65 0.00 0.00 2.74
696 697 7.280876 CCATATGAGCACTTGTATTTGTAGTGT 59.719 37.037 3.65 0.00 33.49 3.55
697 698 5.922739 TGAGCACTTGTATTTGTAGTGTG 57.077 39.130 0.00 0.00 33.49 3.82
698 699 5.364778 TGAGCACTTGTATTTGTAGTGTGT 58.635 37.500 0.00 0.00 33.49 3.72
699 700 5.820423 TGAGCACTTGTATTTGTAGTGTGTT 59.180 36.000 0.00 0.00 33.49 3.32
700 701 6.987404 TGAGCACTTGTATTTGTAGTGTGTTA 59.013 34.615 0.00 0.00 33.49 2.41
701 702 7.496263 TGAGCACTTGTATTTGTAGTGTGTTAA 59.504 33.333 0.00 0.00 33.49 2.01
702 703 8.215926 AGCACTTGTATTTGTAGTGTGTTAAA 57.784 30.769 0.00 0.00 33.49 1.52
703 704 8.679100 AGCACTTGTATTTGTAGTGTGTTAAAA 58.321 29.630 0.00 0.00 33.49 1.52
704 705 9.291664 GCACTTGTATTTGTAGTGTGTTAAAAA 57.708 29.630 0.00 0.00 33.49 1.94
732 733 7.628769 TGTACACGTACATTCTACCTTATGA 57.371 36.000 5.94 0.00 40.77 2.15
733 734 7.700505 TGTACACGTACATTCTACCTTATGAG 58.299 38.462 5.94 0.00 40.77 2.90
734 735 5.589192 ACACGTACATTCTACCTTATGAGC 58.411 41.667 0.00 0.00 0.00 4.26
735 736 5.126545 ACACGTACATTCTACCTTATGAGCA 59.873 40.000 0.00 0.00 0.00 4.26
736 737 5.459107 CACGTACATTCTACCTTATGAGCAC 59.541 44.000 0.00 0.00 0.00 4.40
737 738 4.982916 CGTACATTCTACCTTATGAGCACC 59.017 45.833 0.00 0.00 0.00 5.01
738 739 5.451381 CGTACATTCTACCTTATGAGCACCA 60.451 44.000 0.00 0.00 0.00 4.17
739 740 5.636903 ACATTCTACCTTATGAGCACCAT 57.363 39.130 0.00 0.00 39.25 3.55
740 741 5.615289 ACATTCTACCTTATGAGCACCATC 58.385 41.667 0.00 0.00 36.71 3.51
741 742 4.322080 TTCTACCTTATGAGCACCATCG 57.678 45.455 0.00 0.00 36.71 3.84
742 743 3.296854 TCTACCTTATGAGCACCATCGT 58.703 45.455 0.00 0.00 36.71 3.73
743 744 4.466827 TCTACCTTATGAGCACCATCGTA 58.533 43.478 0.00 0.00 36.71 3.43
744 745 3.735237 ACCTTATGAGCACCATCGTAG 57.265 47.619 0.00 0.00 36.71 3.51
745 746 3.031736 ACCTTATGAGCACCATCGTAGT 58.968 45.455 0.00 0.00 36.71 2.73
746 747 3.068307 ACCTTATGAGCACCATCGTAGTC 59.932 47.826 0.00 0.00 36.71 2.59
747 748 3.300857 CTTATGAGCACCATCGTAGTCG 58.699 50.000 0.00 0.00 36.71 4.18
748 749 1.103803 ATGAGCACCATCGTAGTCGT 58.896 50.000 0.00 0.00 38.33 4.34
749 750 0.450583 TGAGCACCATCGTAGTCGTC 59.549 55.000 0.00 0.00 38.33 4.20
750 751 0.589229 GAGCACCATCGTAGTCGTCG 60.589 60.000 0.00 0.00 38.33 5.12
762 763 2.027897 TCGTCGGGGACAAACACG 59.972 61.111 0.00 0.00 32.09 4.49
768 769 0.869730 CGGGGACAAACACGGTAAAG 59.130 55.000 0.00 0.00 0.00 1.85
770 771 2.148768 GGGGACAAACACGGTAAAGAG 58.851 52.381 0.00 0.00 0.00 2.85
771 772 2.224354 GGGGACAAACACGGTAAAGAGA 60.224 50.000 0.00 0.00 0.00 3.10
772 773 3.064931 GGGACAAACACGGTAAAGAGAG 58.935 50.000 0.00 0.00 0.00 3.20
797 798 9.665264 AGTTTGTTTTCGATTAGAAATCTGTTC 57.335 29.630 0.00 0.00 46.98 3.18
807 808 9.755064 CGATTAGAAATCTGTTCGTGTATTTTT 57.245 29.630 8.02 0.00 31.47 1.94
810 811 6.599437 AGAAATCTGTTCGTGTATTTTTCGG 58.401 36.000 0.00 0.00 0.00 4.30
811 812 6.425721 AGAAATCTGTTCGTGTATTTTTCGGA 59.574 34.615 0.00 0.00 0.00 4.55
932 934 3.963428 AATACTCAGGACACAGTGACC 57.037 47.619 13.67 13.67 32.33 4.02
933 935 2.375014 TACTCAGGACACAGTGACCA 57.625 50.000 22.05 3.68 34.63 4.02
935 937 0.319040 CTCAGGACACAGTGACCACG 60.319 60.000 22.05 13.40 34.63 4.94
936 938 1.040893 TCAGGACACAGTGACCACGT 61.041 55.000 22.05 0.96 34.63 4.49
937 939 0.671796 CAGGACACAGTGACCACGTA 59.328 55.000 22.05 0.00 34.63 3.57
938 940 1.272490 CAGGACACAGTGACCACGTAT 59.728 52.381 22.05 0.24 34.63 3.06
939 941 1.968493 AGGACACAGTGACCACGTATT 59.032 47.619 22.05 0.00 34.63 1.89
940 942 2.367567 AGGACACAGTGACCACGTATTT 59.632 45.455 22.05 0.00 34.63 1.40
1179 1181 1.893808 CGCCGATCCCCAATTCCTG 60.894 63.158 0.00 0.00 0.00 3.86
1368 1373 2.990479 GGCATCTGGTCCTTCCGT 59.010 61.111 0.00 0.00 39.52 4.69
1401 1406 3.114616 CGCGTGCTCTTCACCAGG 61.115 66.667 0.00 0.00 42.69 4.45
1587 1595 3.965539 CTGCCACTCGAGCCCCTTG 62.966 68.421 13.61 2.31 0.00 3.61
1674 1682 1.478105 TCATGGGGCGATCTCATATCG 59.522 52.381 3.13 3.13 43.72 2.92
1740 1748 2.380064 TCCTGGTTGGCAATTCACTT 57.620 45.000 1.92 0.00 35.26 3.16
1794 1802 4.191544 TCCTTGAGCTTGATTTGGATACG 58.808 43.478 0.00 0.00 42.51 3.06
1799 1807 2.939103 AGCTTGATTTGGATACGCAGAC 59.061 45.455 0.00 0.00 42.51 3.51
1872 1883 2.283529 CCTGAGTACGCTGGGTGGT 61.284 63.158 13.68 0.00 0.00 4.16
1899 1910 2.289631 TGGCTTCATCGTTGTGTCAGAT 60.290 45.455 0.00 0.00 0.00 2.90
2010 2021 4.069232 CCGCTGAGACCAGGCGAA 62.069 66.667 8.12 0.00 40.08 4.70
2142 2159 8.374327 AGAAGATTTTTGAAAGCAATCCTTTG 57.626 30.769 0.13 0.00 43.64 2.77
2164 2181 1.197055 CGAATGTACGACATCCACCG 58.803 55.000 0.00 0.00 37.97 4.94
2245 2262 9.700831 AAGGCATATAGTCTTTTCCAATACTTT 57.299 29.630 0.00 0.00 39.74 2.66
2255 2272 3.732048 TCCAATACTTTTGGAGTCCCC 57.268 47.619 6.74 0.00 43.17 4.81
2334 2351 4.202441 GGCTGGTGATGAACTCATAACAT 58.798 43.478 9.04 0.00 39.08 2.71
2335 2352 4.641989 GGCTGGTGATGAACTCATAACATT 59.358 41.667 9.04 0.00 39.08 2.71
2425 2452 8.129840 CAGTATGTGTAACCTGTACTCTATGAC 58.870 40.741 0.00 0.00 34.36 3.06
2506 2533 2.858745 AGCTTAGCTGAAACCGGAAAA 58.141 42.857 9.46 0.00 37.57 2.29
2640 2667 3.879295 TGTTTTGAAGTGCCTCTCTTCTG 59.121 43.478 9.20 0.00 41.04 3.02
2989 3019 6.238130 GCTCAAGTTAGATAAACATTCGGACC 60.238 42.308 0.00 0.00 40.83 4.46
2992 3022 5.346522 AGTTAGATAAACATTCGGACCGTC 58.653 41.667 14.79 0.94 40.83 4.79
3016 3046 3.551635 TCTTTCTGGGAGAGAAGTCCT 57.448 47.619 0.00 0.00 41.86 3.85
3017 3047 3.436243 TCTTTCTGGGAGAGAAGTCCTC 58.564 50.000 0.00 0.00 41.86 3.71
3052 3082 3.935240 AAACTTAAATTGGGAGGGGGT 57.065 42.857 0.00 0.00 0.00 4.95
3066 3146 1.348775 GGGGGTGAGGATGAAGAGGG 61.349 65.000 0.00 0.00 0.00 4.30
3104 3184 8.293867 TGCAGTTCAAGTAAGCGTTAATTTTAT 58.706 29.630 0.00 0.00 0.00 1.40
3215 3323 9.883142 TCAGTTCTGTTATTGAAAATTTTGGTT 57.117 25.926 8.47 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 9.612066 TTTTAGACAGGCAAATCAAATCTTTTT 57.388 25.926 0.00 0.00 0.00 1.94
30 31 9.612066 TTTTTAGACAGGCAAATCAAATCTTTT 57.388 25.926 0.00 0.00 0.00 2.27
56 57 9.193806 ACCTAAATATTCAGCAAATGTCAGATT 57.806 29.630 0.00 0.00 0.00 2.40
57 58 8.757982 ACCTAAATATTCAGCAAATGTCAGAT 57.242 30.769 0.00 0.00 0.00 2.90
58 59 7.283127 GGACCTAAATATTCAGCAAATGTCAGA 59.717 37.037 0.00 0.00 0.00 3.27
59 60 7.284034 AGGACCTAAATATTCAGCAAATGTCAG 59.716 37.037 0.00 0.00 0.00 3.51
60 61 7.118723 AGGACCTAAATATTCAGCAAATGTCA 58.881 34.615 0.00 0.00 0.00 3.58
61 62 7.573968 AGGACCTAAATATTCAGCAAATGTC 57.426 36.000 0.00 0.00 0.00 3.06
62 63 8.903820 GTTAGGACCTAAATATTCAGCAAATGT 58.096 33.333 15.71 0.00 0.00 2.71
63 64 9.125026 AGTTAGGACCTAAATATTCAGCAAATG 57.875 33.333 15.71 0.00 0.00 2.32
64 65 9.343539 GAGTTAGGACCTAAATATTCAGCAAAT 57.656 33.333 15.71 0.00 0.00 2.32
65 66 8.548877 AGAGTTAGGACCTAAATATTCAGCAAA 58.451 33.333 15.71 0.00 0.00 3.68
66 67 7.987458 CAGAGTTAGGACCTAAATATTCAGCAA 59.013 37.037 15.71 0.00 0.00 3.91
67 68 7.500992 CAGAGTTAGGACCTAAATATTCAGCA 58.499 38.462 15.71 0.00 0.00 4.41
68 69 6.425417 GCAGAGTTAGGACCTAAATATTCAGC 59.575 42.308 15.71 14.07 0.00 4.26
69 70 7.500992 TGCAGAGTTAGGACCTAAATATTCAG 58.499 38.462 15.71 9.15 0.00 3.02
70 71 7.432148 TGCAGAGTTAGGACCTAAATATTCA 57.568 36.000 15.71 9.83 0.00 2.57
71 72 8.371699 AGATGCAGAGTTAGGACCTAAATATTC 58.628 37.037 15.71 7.24 0.00 1.75
72 73 8.268878 AGATGCAGAGTTAGGACCTAAATATT 57.731 34.615 15.71 4.17 0.00 1.28
73 74 7.863901 AGATGCAGAGTTAGGACCTAAATAT 57.136 36.000 15.71 9.29 0.00 1.28
74 75 8.639761 GTTAGATGCAGAGTTAGGACCTAAATA 58.360 37.037 15.71 0.00 0.00 1.40
75 76 7.345914 AGTTAGATGCAGAGTTAGGACCTAAAT 59.654 37.037 15.71 14.80 0.00 1.40
76 77 6.668283 AGTTAGATGCAGAGTTAGGACCTAAA 59.332 38.462 15.71 0.00 0.00 1.85
77 78 6.195700 AGTTAGATGCAGAGTTAGGACCTAA 58.804 40.000 10.06 10.06 0.00 2.69
78 79 5.767670 AGTTAGATGCAGAGTTAGGACCTA 58.232 41.667 0.00 0.00 0.00 3.08
79 80 4.615513 AGTTAGATGCAGAGTTAGGACCT 58.384 43.478 0.00 0.00 0.00 3.85
80 81 5.595133 AGTAGTTAGATGCAGAGTTAGGACC 59.405 44.000 0.00 0.00 0.00 4.46
81 82 6.702716 AGTAGTTAGATGCAGAGTTAGGAC 57.297 41.667 0.00 0.00 0.00 3.85
82 83 8.818622 TTTAGTAGTTAGATGCAGAGTTAGGA 57.181 34.615 0.00 0.00 0.00 2.94
83 84 9.871238 TTTTTAGTAGTTAGATGCAGAGTTAGG 57.129 33.333 0.00 0.00 0.00 2.69
106 107 8.442384 GTTTGATGTGTTGTCTGTTGAATTTTT 58.558 29.630 0.00 0.00 0.00 1.94
107 108 7.818930 AGTTTGATGTGTTGTCTGTTGAATTTT 59.181 29.630 0.00 0.00 0.00 1.82
108 109 7.322664 AGTTTGATGTGTTGTCTGTTGAATTT 58.677 30.769 0.00 0.00 0.00 1.82
109 110 6.866480 AGTTTGATGTGTTGTCTGTTGAATT 58.134 32.000 0.00 0.00 0.00 2.17
110 111 6.455360 AGTTTGATGTGTTGTCTGTTGAAT 57.545 33.333 0.00 0.00 0.00 2.57
111 112 5.895636 AGTTTGATGTGTTGTCTGTTGAA 57.104 34.783 0.00 0.00 0.00 2.69
112 113 7.566760 AATAGTTTGATGTGTTGTCTGTTGA 57.433 32.000 0.00 0.00 0.00 3.18
113 114 9.897744 ATAAATAGTTTGATGTGTTGTCTGTTG 57.102 29.630 0.00 0.00 0.00 3.33
115 116 9.507329 AGATAAATAGTTTGATGTGTTGTCTGT 57.493 29.630 0.00 0.00 0.00 3.41
118 119 9.478019 CGAAGATAAATAGTTTGATGTGTTGTC 57.522 33.333 0.00 0.00 0.00 3.18
119 120 8.999431 ACGAAGATAAATAGTTTGATGTGTTGT 58.001 29.630 0.00 0.00 0.00 3.32
120 121 9.478019 GACGAAGATAAATAGTTTGATGTGTTG 57.522 33.333 0.00 0.00 0.00 3.33
121 122 9.214957 TGACGAAGATAAATAGTTTGATGTGTT 57.785 29.630 0.00 0.00 0.00 3.32
122 123 8.771920 TGACGAAGATAAATAGTTTGATGTGT 57.228 30.769 0.00 0.00 0.00 3.72
206 207 4.866921 TGTTTGGTGGTATCGATATCTCG 58.133 43.478 16.41 0.00 46.41 4.04
207 208 5.465724 GGTTGTTTGGTGGTATCGATATCTC 59.534 44.000 16.41 12.54 0.00 2.75
208 209 5.104693 TGGTTGTTTGGTGGTATCGATATCT 60.105 40.000 16.41 0.00 0.00 1.98
209 210 5.007332 GTGGTTGTTTGGTGGTATCGATATC 59.993 44.000 8.66 8.75 0.00 1.63
210 211 4.879545 GTGGTTGTTTGGTGGTATCGATAT 59.120 41.667 8.66 0.00 0.00 1.63
211 212 4.020039 AGTGGTTGTTTGGTGGTATCGATA 60.020 41.667 0.00 0.00 0.00 2.92
212 213 3.078837 GTGGTTGTTTGGTGGTATCGAT 58.921 45.455 2.16 2.16 0.00 3.59
213 214 2.105134 AGTGGTTGTTTGGTGGTATCGA 59.895 45.455 0.00 0.00 0.00 3.59
214 215 2.500229 AGTGGTTGTTTGGTGGTATCG 58.500 47.619 0.00 0.00 0.00 2.92
215 216 4.454504 CAGTAGTGGTTGTTTGGTGGTATC 59.545 45.833 0.00 0.00 0.00 2.24
216 217 4.394729 CAGTAGTGGTTGTTTGGTGGTAT 58.605 43.478 0.00 0.00 0.00 2.73
217 218 3.811083 CAGTAGTGGTTGTTTGGTGGTA 58.189 45.455 0.00 0.00 0.00 3.25
218 219 2.650322 CAGTAGTGGTTGTTTGGTGGT 58.350 47.619 0.00 0.00 0.00 4.16
219 220 1.336755 GCAGTAGTGGTTGTTTGGTGG 59.663 52.381 0.00 0.00 0.00 4.61
220 221 1.336755 GGCAGTAGTGGTTGTTTGGTG 59.663 52.381 0.00 0.00 0.00 4.17
221 222 1.064314 TGGCAGTAGTGGTTGTTTGGT 60.064 47.619 0.00 0.00 0.00 3.67
222 223 1.336755 GTGGCAGTAGTGGTTGTTTGG 59.663 52.381 0.00 0.00 0.00 3.28
223 224 2.020720 TGTGGCAGTAGTGGTTGTTTG 58.979 47.619 0.00 0.00 0.00 2.93
224 225 2.092646 TCTGTGGCAGTAGTGGTTGTTT 60.093 45.455 0.00 0.00 32.61 2.83
225 226 1.488812 TCTGTGGCAGTAGTGGTTGTT 59.511 47.619 0.00 0.00 32.61 2.83
226 227 1.070758 CTCTGTGGCAGTAGTGGTTGT 59.929 52.381 0.00 0.00 32.61 3.32
227 228 1.344438 TCTCTGTGGCAGTAGTGGTTG 59.656 52.381 0.00 0.00 32.61 3.77
228 229 1.344763 GTCTCTGTGGCAGTAGTGGTT 59.655 52.381 0.00 0.00 32.61 3.67
229 230 0.969894 GTCTCTGTGGCAGTAGTGGT 59.030 55.000 0.00 0.00 32.61 4.16
230 231 0.969149 TGTCTCTGTGGCAGTAGTGG 59.031 55.000 0.00 0.00 32.61 4.00
231 232 1.341209 TGTGTCTCTGTGGCAGTAGTG 59.659 52.381 0.00 0.00 32.61 2.74
232 233 1.341531 GTGTGTCTCTGTGGCAGTAGT 59.658 52.381 0.00 0.00 32.61 2.73
233 234 1.667177 CGTGTGTCTCTGTGGCAGTAG 60.667 57.143 0.00 0.00 32.61 2.57
234 235 0.313987 CGTGTGTCTCTGTGGCAGTA 59.686 55.000 0.00 0.00 32.61 2.74
235 236 1.068083 CGTGTGTCTCTGTGGCAGT 59.932 57.895 0.00 0.00 32.61 4.40
236 237 0.665670 CTCGTGTGTCTCTGTGGCAG 60.666 60.000 0.00 0.00 0.00 4.85
237 238 1.106944 TCTCGTGTGTCTCTGTGGCA 61.107 55.000 0.00 0.00 0.00 4.92
238 239 0.244994 ATCTCGTGTGTCTCTGTGGC 59.755 55.000 0.00 0.00 0.00 5.01
239 240 1.270826 ACATCTCGTGTGTCTCTGTGG 59.729 52.381 0.00 0.00 40.28 4.17
240 241 2.713895 ACATCTCGTGTGTCTCTGTG 57.286 50.000 0.00 0.00 40.28 3.66
241 242 5.392767 AAATACATCTCGTGTGTCTCTGT 57.607 39.130 0.00 0.00 42.24 3.41
242 243 6.712241 AAAAATACATCTCGTGTGTCTCTG 57.288 37.500 0.00 0.00 42.24 3.35
279 280 9.126151 TCATCAATTGTCAAGGTAGTACAAAAA 57.874 29.630 5.13 0.00 36.75 1.94
280 281 8.684386 TCATCAATTGTCAAGGTAGTACAAAA 57.316 30.769 5.13 0.00 36.75 2.44
281 282 8.684386 TTCATCAATTGTCAAGGTAGTACAAA 57.316 30.769 5.13 0.00 36.75 2.83
282 283 8.862325 ATTCATCAATTGTCAAGGTAGTACAA 57.138 30.769 5.13 0.00 37.51 2.41
283 284 9.599866 CTATTCATCAATTGTCAAGGTAGTACA 57.400 33.333 5.13 0.00 0.00 2.90
284 285 9.046296 CCTATTCATCAATTGTCAAGGTAGTAC 57.954 37.037 5.13 0.00 0.00 2.73
285 286 7.715249 GCCTATTCATCAATTGTCAAGGTAGTA 59.285 37.037 5.13 0.00 0.00 1.82
286 287 6.543831 GCCTATTCATCAATTGTCAAGGTAGT 59.456 38.462 5.13 0.00 0.00 2.73
287 288 6.016777 GGCCTATTCATCAATTGTCAAGGTAG 60.017 42.308 5.13 3.15 0.00 3.18
288 289 5.827797 GGCCTATTCATCAATTGTCAAGGTA 59.172 40.000 5.13 0.00 0.00 3.08
289 290 4.646492 GGCCTATTCATCAATTGTCAAGGT 59.354 41.667 5.13 0.00 0.00 3.50
290 291 4.261322 CGGCCTATTCATCAATTGTCAAGG 60.261 45.833 5.13 6.52 0.00 3.61
291 292 4.261322 CCGGCCTATTCATCAATTGTCAAG 60.261 45.833 5.13 0.00 0.00 3.02
292 293 3.631686 CCGGCCTATTCATCAATTGTCAA 59.368 43.478 5.13 0.00 0.00 3.18
293 294 3.118075 TCCGGCCTATTCATCAATTGTCA 60.118 43.478 5.13 0.00 0.00 3.58
294 295 3.476552 TCCGGCCTATTCATCAATTGTC 58.523 45.455 5.13 0.00 0.00 3.18
295 296 3.576078 TCCGGCCTATTCATCAATTGT 57.424 42.857 5.13 0.00 0.00 2.71
296 297 3.885297 ACTTCCGGCCTATTCATCAATTG 59.115 43.478 0.00 0.00 0.00 2.32
297 298 4.170468 ACTTCCGGCCTATTCATCAATT 57.830 40.909 0.00 0.00 0.00 2.32
298 299 3.864789 ACTTCCGGCCTATTCATCAAT 57.135 42.857 0.00 0.00 0.00 2.57
299 300 3.644966 AACTTCCGGCCTATTCATCAA 57.355 42.857 0.00 0.00 0.00 2.57
300 301 3.644966 AAACTTCCGGCCTATTCATCA 57.355 42.857 0.00 0.00 0.00 3.07
301 302 3.315470 GGAAAACTTCCGGCCTATTCATC 59.685 47.826 0.00 0.00 40.59 2.92
302 303 3.288092 GGAAAACTTCCGGCCTATTCAT 58.712 45.455 0.00 0.00 40.59 2.57
303 304 2.718563 GGAAAACTTCCGGCCTATTCA 58.281 47.619 0.00 0.00 40.59 2.57
335 336 9.088987 ACAATTGGGAGTACATTATTTTCAACT 57.911 29.630 10.83 0.00 0.00 3.16
345 346 8.768397 TGTCTTAGATACAATTGGGAGTACATT 58.232 33.333 10.83 0.00 0.00 2.71
346 347 8.319057 TGTCTTAGATACAATTGGGAGTACAT 57.681 34.615 10.83 0.00 0.00 2.29
347 348 7.147724 CCTGTCTTAGATACAATTGGGAGTACA 60.148 40.741 10.83 3.21 0.00 2.90
348 349 7.069578 TCCTGTCTTAGATACAATTGGGAGTAC 59.930 40.741 10.83 0.00 0.00 2.73
349 350 7.130099 TCCTGTCTTAGATACAATTGGGAGTA 58.870 38.462 10.83 0.00 0.00 2.59
350 351 5.964477 TCCTGTCTTAGATACAATTGGGAGT 59.036 40.000 10.83 0.00 0.00 3.85
351 352 6.485830 TCCTGTCTTAGATACAATTGGGAG 57.514 41.667 10.83 0.00 0.00 4.30
352 353 6.884472 TTCCTGTCTTAGATACAATTGGGA 57.116 37.500 10.83 0.00 0.00 4.37
353 354 7.938140 TTTTCCTGTCTTAGATACAATTGGG 57.062 36.000 10.83 0.00 0.00 4.12
354 355 8.462016 CCTTTTTCCTGTCTTAGATACAATTGG 58.538 37.037 10.83 0.00 0.00 3.16
355 356 7.970614 GCCTTTTTCCTGTCTTAGATACAATTG 59.029 37.037 3.24 3.24 0.00 2.32
356 357 7.148239 CGCCTTTTTCCTGTCTTAGATACAATT 60.148 37.037 0.00 0.00 0.00 2.32
357 358 6.316390 CGCCTTTTTCCTGTCTTAGATACAAT 59.684 38.462 0.00 0.00 0.00 2.71
358 359 5.642063 CGCCTTTTTCCTGTCTTAGATACAA 59.358 40.000 0.00 0.00 0.00 2.41
359 360 5.175859 CGCCTTTTTCCTGTCTTAGATACA 58.824 41.667 0.00 0.00 0.00 2.29
360 361 4.571176 CCGCCTTTTTCCTGTCTTAGATAC 59.429 45.833 0.00 0.00 0.00 2.24
361 362 4.224370 ACCGCCTTTTTCCTGTCTTAGATA 59.776 41.667 0.00 0.00 0.00 1.98
362 363 3.009143 ACCGCCTTTTTCCTGTCTTAGAT 59.991 43.478 0.00 0.00 0.00 1.98
363 364 2.370849 ACCGCCTTTTTCCTGTCTTAGA 59.629 45.455 0.00 0.00 0.00 2.10
364 365 2.779506 ACCGCCTTTTTCCTGTCTTAG 58.220 47.619 0.00 0.00 0.00 2.18
365 366 2.943036 ACCGCCTTTTTCCTGTCTTA 57.057 45.000 0.00 0.00 0.00 2.10
366 367 2.943036 TACCGCCTTTTTCCTGTCTT 57.057 45.000 0.00 0.00 0.00 3.01
367 368 3.434940 AATACCGCCTTTTTCCTGTCT 57.565 42.857 0.00 0.00 0.00 3.41
368 369 4.234574 CAAAATACCGCCTTTTTCCTGTC 58.765 43.478 0.00 0.00 0.00 3.51
369 370 3.006430 CCAAAATACCGCCTTTTTCCTGT 59.994 43.478 0.00 0.00 0.00 4.00
370 371 3.006430 ACCAAAATACCGCCTTTTTCCTG 59.994 43.478 0.00 0.00 0.00 3.86
371 372 3.236047 ACCAAAATACCGCCTTTTTCCT 58.764 40.909 0.00 0.00 0.00 3.36
372 373 3.671008 ACCAAAATACCGCCTTTTTCC 57.329 42.857 0.00 0.00 0.00 3.13
373 374 5.119588 GCTAAACCAAAATACCGCCTTTTTC 59.880 40.000 0.00 0.00 0.00 2.29
374 375 4.992319 GCTAAACCAAAATACCGCCTTTTT 59.008 37.500 0.00 0.00 0.00 1.94
375 376 4.039366 TGCTAAACCAAAATACCGCCTTTT 59.961 37.500 0.00 0.00 0.00 2.27
376 377 3.574826 TGCTAAACCAAAATACCGCCTTT 59.425 39.130 0.00 0.00 0.00 3.11
377 378 3.158676 TGCTAAACCAAAATACCGCCTT 58.841 40.909 0.00 0.00 0.00 4.35
378 379 2.797786 TGCTAAACCAAAATACCGCCT 58.202 42.857 0.00 0.00 0.00 5.52
379 380 3.579335 TTGCTAAACCAAAATACCGCC 57.421 42.857 0.00 0.00 0.00 6.13
380 381 4.552355 ACTTTGCTAAACCAAAATACCGC 58.448 39.130 0.00 0.00 34.59 5.68
381 382 8.452534 TGTATACTTTGCTAAACCAAAATACCG 58.547 33.333 4.17 0.00 34.59 4.02
382 383 9.783256 CTGTATACTTTGCTAAACCAAAATACC 57.217 33.333 4.17 0.00 34.59 2.73
385 386 8.234546 CGTCTGTATACTTTGCTAAACCAAAAT 58.765 33.333 4.17 0.00 34.59 1.82
386 387 7.577979 CGTCTGTATACTTTGCTAAACCAAAA 58.422 34.615 4.17 0.00 34.59 2.44
387 388 6.347888 GCGTCTGTATACTTTGCTAAACCAAA 60.348 38.462 4.17 0.00 33.93 3.28
388 389 5.121142 GCGTCTGTATACTTTGCTAAACCAA 59.879 40.000 4.17 0.00 0.00 3.67
389 390 4.628333 GCGTCTGTATACTTTGCTAAACCA 59.372 41.667 4.17 0.00 0.00 3.67
390 391 4.628333 TGCGTCTGTATACTTTGCTAAACC 59.372 41.667 4.17 0.00 0.00 3.27
391 392 5.773239 TGCGTCTGTATACTTTGCTAAAC 57.227 39.130 4.17 0.00 0.00 2.01
392 393 7.009815 GTGTATGCGTCTGTATACTTTGCTAAA 59.990 37.037 4.17 0.00 42.26 1.85
393 394 6.474427 GTGTATGCGTCTGTATACTTTGCTAA 59.526 38.462 4.17 0.00 42.26 3.09
394 395 5.975344 GTGTATGCGTCTGTATACTTTGCTA 59.025 40.000 4.17 0.00 42.26 3.49
395 396 4.804139 GTGTATGCGTCTGTATACTTTGCT 59.196 41.667 4.17 0.00 42.26 3.91
396 397 4.804139 AGTGTATGCGTCTGTATACTTTGC 59.196 41.667 4.17 4.02 42.26 3.68
397 398 6.033966 TGAGTGTATGCGTCTGTATACTTTG 58.966 40.000 4.17 0.00 42.26 2.77
398 399 6.203808 TGAGTGTATGCGTCTGTATACTTT 57.796 37.500 4.17 0.00 42.26 2.66
399 400 5.830000 TGAGTGTATGCGTCTGTATACTT 57.170 39.130 4.17 0.00 42.26 2.24
400 401 7.689446 ATATGAGTGTATGCGTCTGTATACT 57.311 36.000 4.17 0.00 42.26 2.12
405 406 9.174166 TGTATATATATGAGTGTATGCGTCTGT 57.826 33.333 5.44 0.00 0.00 3.41
408 409 8.906693 GCATGTATATATATGAGTGTATGCGTC 58.093 37.037 20.21 0.00 0.00 5.19
409 410 8.413229 TGCATGTATATATATGAGTGTATGCGT 58.587 33.333 20.21 0.00 39.83 5.24
410 411 8.801715 TGCATGTATATATATGAGTGTATGCG 57.198 34.615 20.21 0.00 39.83 4.73
439 440 9.758651 TGCGTGTGTATATTCATAAAGATAAGT 57.241 29.630 0.00 0.00 0.00 2.24
441 442 8.696175 CGTGCGTGTGTATATTCATAAAGATAA 58.304 33.333 0.00 0.00 0.00 1.75
442 443 7.863877 ACGTGCGTGTGTATATTCATAAAGATA 59.136 33.333 0.00 0.00 0.00 1.98
443 444 6.700081 ACGTGCGTGTGTATATTCATAAAGAT 59.300 34.615 0.00 0.00 0.00 2.40
444 445 6.020201 CACGTGCGTGTGTATATTCATAAAGA 60.020 38.462 15.60 0.00 40.91 2.52
445 446 6.020201 TCACGTGCGTGTGTATATTCATAAAG 60.020 38.462 21.63 0.00 45.55 1.85
446 447 5.805994 TCACGTGCGTGTGTATATTCATAAA 59.194 36.000 21.63 0.00 45.55 1.40
447 448 5.341617 TCACGTGCGTGTGTATATTCATAA 58.658 37.500 21.63 0.00 45.55 1.90
448 449 4.922719 TCACGTGCGTGTGTATATTCATA 58.077 39.130 21.63 0.00 45.55 2.15
449 450 3.776340 TCACGTGCGTGTGTATATTCAT 58.224 40.909 21.63 0.00 45.55 2.57
450 451 3.219052 TCACGTGCGTGTGTATATTCA 57.781 42.857 21.63 0.00 45.55 2.57
451 452 3.241868 GGTTCACGTGCGTGTGTATATTC 60.242 47.826 21.63 6.99 45.55 1.75
452 453 2.669434 GGTTCACGTGCGTGTGTATATT 59.331 45.455 21.63 0.00 45.55 1.28
453 454 2.264813 GGTTCACGTGCGTGTGTATAT 58.735 47.619 21.63 0.00 45.55 0.86
454 455 1.000496 TGGTTCACGTGCGTGTGTATA 60.000 47.619 21.63 2.17 45.55 1.47
455 456 0.249531 TGGTTCACGTGCGTGTGTAT 60.250 50.000 21.63 0.00 45.55 2.29
456 457 0.459759 TTGGTTCACGTGCGTGTGTA 60.460 50.000 21.63 8.30 45.55 2.90
457 458 1.299562 TTTGGTTCACGTGCGTGTGT 61.300 50.000 21.63 0.00 45.55 3.72
458 459 0.028770 ATTTGGTTCACGTGCGTGTG 59.971 50.000 21.63 1.92 45.55 3.82
459 460 0.736053 AATTTGGTTCACGTGCGTGT 59.264 45.000 21.63 0.80 45.55 4.49
460 461 2.672188 TAATTTGGTTCACGTGCGTG 57.328 45.000 17.44 17.44 46.64 5.34
461 462 2.095466 CCATAATTTGGTTCACGTGCGT 60.095 45.455 11.67 0.00 40.99 5.24
462 463 2.514902 CCATAATTTGGTTCACGTGCG 58.485 47.619 11.67 0.00 40.99 5.34
475 476 9.707957 TGTCCATTTAACTATCCAACCATAATT 57.292 29.630 0.00 0.00 0.00 1.40
476 477 9.707957 TTGTCCATTTAACTATCCAACCATAAT 57.292 29.630 0.00 0.00 0.00 1.28
477 478 9.707957 ATTGTCCATTTAACTATCCAACCATAA 57.292 29.630 0.00 0.00 0.00 1.90
478 479 9.130661 CATTGTCCATTTAACTATCCAACCATA 57.869 33.333 0.00 0.00 0.00 2.74
479 480 7.069826 CCATTGTCCATTTAACTATCCAACCAT 59.930 37.037 0.00 0.00 0.00 3.55
480 481 6.379703 CCATTGTCCATTTAACTATCCAACCA 59.620 38.462 0.00 0.00 0.00 3.67
481 482 6.379988 ACCATTGTCCATTTAACTATCCAACC 59.620 38.462 0.00 0.00 0.00 3.77
482 483 7.404671 ACCATTGTCCATTTAACTATCCAAC 57.595 36.000 0.00 0.00 0.00 3.77
483 484 9.349713 GATACCATTGTCCATTTAACTATCCAA 57.650 33.333 0.00 0.00 0.00 3.53
484 485 7.942341 GGATACCATTGTCCATTTAACTATCCA 59.058 37.037 0.00 0.00 33.15 3.41
485 486 8.164070 AGGATACCATTGTCCATTTAACTATCC 58.836 37.037 0.00 0.00 35.42 2.59
486 487 9.220767 GAGGATACCATTGTCCATTTAACTATC 57.779 37.037 0.00 0.00 35.42 2.08
487 488 8.723365 TGAGGATACCATTGTCCATTTAACTAT 58.277 33.333 0.00 0.00 35.42 2.12
488 489 8.096621 TGAGGATACCATTGTCCATTTAACTA 57.903 34.615 0.00 0.00 35.42 2.24
489 490 6.969043 TGAGGATACCATTGTCCATTTAACT 58.031 36.000 0.00 0.00 35.42 2.24
490 491 7.416326 GGTTGAGGATACCATTGTCCATTTAAC 60.416 40.741 0.00 0.00 35.42 2.01
491 492 6.605594 GGTTGAGGATACCATTGTCCATTTAA 59.394 38.462 0.00 0.00 35.42 1.52
492 493 6.126409 GGTTGAGGATACCATTGTCCATTTA 58.874 40.000 0.00 0.00 35.42 1.40
493 494 4.956075 GGTTGAGGATACCATTGTCCATTT 59.044 41.667 0.00 0.00 35.42 2.32
494 495 4.536765 GGTTGAGGATACCATTGTCCATT 58.463 43.478 0.00 0.00 35.42 3.16
495 496 3.117512 GGGTTGAGGATACCATTGTCCAT 60.118 47.826 0.00 0.00 35.42 3.41
496 497 2.241176 GGGTTGAGGATACCATTGTCCA 59.759 50.000 0.00 0.00 35.42 4.02
497 498 2.241176 TGGGTTGAGGATACCATTGTCC 59.759 50.000 0.00 0.00 37.40 4.02
498 499 3.279434 GTGGGTTGAGGATACCATTGTC 58.721 50.000 0.00 0.00 37.40 3.18
499 500 2.025321 GGTGGGTTGAGGATACCATTGT 60.025 50.000 0.00 0.00 37.40 2.71
500 501 2.025416 TGGTGGGTTGAGGATACCATTG 60.025 50.000 0.00 0.00 36.56 2.82
501 502 2.283834 TGGTGGGTTGAGGATACCATT 58.716 47.619 0.00 0.00 36.56 3.16
502 503 1.979809 TGGTGGGTTGAGGATACCAT 58.020 50.000 0.00 0.00 36.56 3.55
503 504 1.633432 CTTGGTGGGTTGAGGATACCA 59.367 52.381 0.00 0.00 39.49 3.25
504 505 1.913419 TCTTGGTGGGTTGAGGATACC 59.087 52.381 0.00 0.00 34.82 2.73
505 506 3.933861 ATCTTGGTGGGTTGAGGATAC 57.066 47.619 0.00 0.00 0.00 2.24
506 507 4.946160 AAATCTTGGTGGGTTGAGGATA 57.054 40.909 0.00 0.00 0.00 2.59
507 508 3.833559 AAATCTTGGTGGGTTGAGGAT 57.166 42.857 0.00 0.00 0.00 3.24
508 509 4.105697 ACTTAAATCTTGGTGGGTTGAGGA 59.894 41.667 0.00 0.00 0.00 3.71
509 510 4.407365 ACTTAAATCTTGGTGGGTTGAGG 58.593 43.478 0.00 0.00 0.00 3.86
510 511 5.334879 CGAACTTAAATCTTGGTGGGTTGAG 60.335 44.000 0.00 0.00 0.00 3.02
511 512 4.517453 CGAACTTAAATCTTGGTGGGTTGA 59.483 41.667 0.00 0.00 0.00 3.18
512 513 4.320935 CCGAACTTAAATCTTGGTGGGTTG 60.321 45.833 0.00 0.00 0.00 3.77
513 514 3.824443 CCGAACTTAAATCTTGGTGGGTT 59.176 43.478 0.00 0.00 0.00 4.11
514 515 3.418047 CCGAACTTAAATCTTGGTGGGT 58.582 45.455 0.00 0.00 0.00 4.51
515 516 2.752903 CCCGAACTTAAATCTTGGTGGG 59.247 50.000 0.00 0.00 0.00 4.61
516 517 3.190535 CACCCGAACTTAAATCTTGGTGG 59.809 47.826 13.34 0.00 35.46 4.61
517 518 3.818773 ACACCCGAACTTAAATCTTGGTG 59.181 43.478 16.63 16.63 40.42 4.17
518 519 4.094830 ACACCCGAACTTAAATCTTGGT 57.905 40.909 0.00 0.00 0.00 3.67
519 520 4.378046 CGAACACCCGAACTTAAATCTTGG 60.378 45.833 0.00 0.00 0.00 3.61
520 521 4.708601 CGAACACCCGAACTTAAATCTTG 58.291 43.478 0.00 0.00 0.00 3.02
521 522 3.187842 GCGAACACCCGAACTTAAATCTT 59.812 43.478 0.00 0.00 0.00 2.40
522 523 2.740447 GCGAACACCCGAACTTAAATCT 59.260 45.455 0.00 0.00 0.00 2.40
523 524 2.481185 TGCGAACACCCGAACTTAAATC 59.519 45.455 0.00 0.00 0.00 2.17
524 525 2.496111 TGCGAACACCCGAACTTAAAT 58.504 42.857 0.00 0.00 0.00 1.40
525 526 1.950828 TGCGAACACCCGAACTTAAA 58.049 45.000 0.00 0.00 0.00 1.52
526 527 2.172851 ATGCGAACACCCGAACTTAA 57.827 45.000 0.00 0.00 0.00 1.85
527 528 2.172851 AATGCGAACACCCGAACTTA 57.827 45.000 0.00 0.00 0.00 2.24
528 529 1.265905 GAAATGCGAACACCCGAACTT 59.734 47.619 0.00 0.00 0.00 2.66
529 530 0.872388 GAAATGCGAACACCCGAACT 59.128 50.000 0.00 0.00 0.00 3.01
530 531 0.872388 AGAAATGCGAACACCCGAAC 59.128 50.000 0.00 0.00 0.00 3.95
531 532 1.600023 AAGAAATGCGAACACCCGAA 58.400 45.000 0.00 0.00 0.00 4.30
532 533 1.600023 AAAGAAATGCGAACACCCGA 58.400 45.000 0.00 0.00 0.00 5.14
533 534 2.050691 CAAAAGAAATGCGAACACCCG 58.949 47.619 0.00 0.00 0.00 5.28
534 535 2.223947 ACCAAAAGAAATGCGAACACCC 60.224 45.455 0.00 0.00 0.00 4.61
535 536 3.092334 ACCAAAAGAAATGCGAACACC 57.908 42.857 0.00 0.00 0.00 4.16
536 537 5.463499 AAAACCAAAAGAAATGCGAACAC 57.537 34.783 0.00 0.00 0.00 3.32
537 538 7.778470 AATAAAACCAAAAGAAATGCGAACA 57.222 28.000 0.00 0.00 0.00 3.18
538 539 9.497030 AAAAATAAAACCAAAAGAAATGCGAAC 57.503 25.926 0.00 0.00 0.00 3.95
539 540 9.709600 GAAAAATAAAACCAAAAGAAATGCGAA 57.290 25.926 0.00 0.00 0.00 4.70
540 541 8.883731 TGAAAAATAAAACCAAAAGAAATGCGA 58.116 25.926 0.00 0.00 0.00 5.10
541 542 9.157259 CTGAAAAATAAAACCAAAAGAAATGCG 57.843 29.630 0.00 0.00 0.00 4.73
542 543 9.449550 CCTGAAAAATAAAACCAAAAGAAATGC 57.550 29.630 0.00 0.00 0.00 3.56
550 551 9.336171 CCAGAAATCCTGAAAAATAAAACCAAA 57.664 29.630 0.00 0.00 45.78 3.28
551 552 7.443879 GCCAGAAATCCTGAAAAATAAAACCAA 59.556 33.333 0.00 0.00 45.78 3.67
552 553 6.934083 GCCAGAAATCCTGAAAAATAAAACCA 59.066 34.615 0.00 0.00 45.78 3.67
553 554 6.090763 CGCCAGAAATCCTGAAAAATAAAACC 59.909 38.462 0.00 0.00 45.78 3.27
554 555 6.866248 TCGCCAGAAATCCTGAAAAATAAAAC 59.134 34.615 0.00 0.00 45.78 2.43
555 556 6.987386 TCGCCAGAAATCCTGAAAAATAAAA 58.013 32.000 0.00 0.00 45.78 1.52
556 557 6.582677 TCGCCAGAAATCCTGAAAAATAAA 57.417 33.333 0.00 0.00 45.78 1.40
557 558 6.773976 ATCGCCAGAAATCCTGAAAAATAA 57.226 33.333 0.00 0.00 45.78 1.40
558 559 6.458206 CGAATCGCCAGAAATCCTGAAAAATA 60.458 38.462 0.00 0.00 45.78 1.40
559 560 5.654497 GAATCGCCAGAAATCCTGAAAAAT 58.346 37.500 0.00 0.00 45.78 1.82
560 561 4.379394 CGAATCGCCAGAAATCCTGAAAAA 60.379 41.667 0.00 0.00 45.78 1.94
561 562 3.126858 CGAATCGCCAGAAATCCTGAAAA 59.873 43.478 0.00 0.00 45.78 2.29
562 563 2.677836 CGAATCGCCAGAAATCCTGAAA 59.322 45.455 0.00 0.00 45.78 2.69
563 564 2.279741 CGAATCGCCAGAAATCCTGAA 58.720 47.619 0.00 0.00 45.78 3.02
564 565 1.939974 CGAATCGCCAGAAATCCTGA 58.060 50.000 0.00 0.00 45.78 3.86
577 578 3.965209 TCTTTCACTAAACGCGAATCG 57.035 42.857 15.93 0.00 45.38 3.34
578 579 5.511088 TCTTCTTTCACTAAACGCGAATC 57.489 39.130 15.93 0.00 0.00 2.52
579 580 5.637810 TCATCTTCTTTCACTAAACGCGAAT 59.362 36.000 15.93 2.78 0.00 3.34
580 581 4.986034 TCATCTTCTTTCACTAAACGCGAA 59.014 37.500 15.93 0.00 0.00 4.70
581 582 4.552355 TCATCTTCTTTCACTAAACGCGA 58.448 39.130 15.93 0.00 0.00 5.87
582 583 4.903638 TCATCTTCTTTCACTAAACGCG 57.096 40.909 3.53 3.53 0.00 6.01
583 584 6.229561 AGTTCATCTTCTTTCACTAAACGC 57.770 37.500 0.00 0.00 0.00 4.84
596 597 5.632347 TCGAGGTTTTACGAAGTTCATCTTC 59.368 40.000 3.32 0.00 37.78 2.87
597 598 5.535333 TCGAGGTTTTACGAAGTTCATCTT 58.465 37.500 3.32 0.00 37.78 2.40
598 599 5.130292 TCGAGGTTTTACGAAGTTCATCT 57.870 39.130 3.32 0.00 37.78 2.90
599 600 5.834239 TTCGAGGTTTTACGAAGTTCATC 57.166 39.130 3.32 0.00 37.78 2.92
600 601 6.425721 TCATTTCGAGGTTTTACGAAGTTCAT 59.574 34.615 3.32 0.00 46.29 2.57
601 602 5.754406 TCATTTCGAGGTTTTACGAAGTTCA 59.246 36.000 3.32 0.00 46.29 3.18
602 603 6.219302 TCATTTCGAGGTTTTACGAAGTTC 57.781 37.500 0.00 0.00 46.29 3.01
603 604 6.796705 ATCATTTCGAGGTTTTACGAAGTT 57.203 33.333 0.00 0.00 46.29 2.66
604 605 7.465513 GCATATCATTTCGAGGTTTTACGAAGT 60.466 37.037 0.00 0.00 46.29 3.01
605 606 6.846283 GCATATCATTTCGAGGTTTTACGAAG 59.154 38.462 0.00 0.00 46.29 3.79
606 607 6.238266 GGCATATCATTTCGAGGTTTTACGAA 60.238 38.462 0.00 0.00 44.66 3.85
607 608 5.235616 GGCATATCATTTCGAGGTTTTACGA 59.764 40.000 0.00 0.00 36.75 3.43
608 609 5.007234 TGGCATATCATTTCGAGGTTTTACG 59.993 40.000 0.00 0.00 0.00 3.18
609 610 6.371809 TGGCATATCATTTCGAGGTTTTAC 57.628 37.500 0.00 0.00 0.00 2.01
610 611 6.601613 AGTTGGCATATCATTTCGAGGTTTTA 59.398 34.615 0.00 0.00 0.00 1.52
611 612 5.418840 AGTTGGCATATCATTTCGAGGTTTT 59.581 36.000 0.00 0.00 0.00 2.43
612 613 4.949856 AGTTGGCATATCATTTCGAGGTTT 59.050 37.500 0.00 0.00 0.00 3.27
613 614 4.526970 AGTTGGCATATCATTTCGAGGTT 58.473 39.130 0.00 0.00 0.00 3.50
614 615 4.130118 GAGTTGGCATATCATTTCGAGGT 58.870 43.478 0.00 0.00 0.00 3.85
615 616 4.024556 GTGAGTTGGCATATCATTTCGAGG 60.025 45.833 5.57 0.00 0.00 4.63
616 617 4.813161 AGTGAGTTGGCATATCATTTCGAG 59.187 41.667 5.57 0.00 0.00 4.04
617 618 4.769688 AGTGAGTTGGCATATCATTTCGA 58.230 39.130 5.57 0.00 0.00 3.71
618 619 4.318333 CGAGTGAGTTGGCATATCATTTCG 60.318 45.833 16.81 16.81 31.47 3.46
619 620 4.811024 TCGAGTGAGTTGGCATATCATTTC 59.189 41.667 5.57 6.28 0.00 2.17
620 621 4.769688 TCGAGTGAGTTGGCATATCATTT 58.230 39.130 5.57 0.00 0.00 2.32
621 622 4.406648 TCGAGTGAGTTGGCATATCATT 57.593 40.909 5.57 1.93 0.00 2.57
622 623 4.100035 TCTTCGAGTGAGTTGGCATATCAT 59.900 41.667 5.57 0.00 0.00 2.45
623 624 3.447229 TCTTCGAGTGAGTTGGCATATCA 59.553 43.478 0.00 0.00 0.00 2.15
624 625 4.046938 TCTTCGAGTGAGTTGGCATATC 57.953 45.455 0.00 0.00 0.00 1.63
625 626 4.375272 CATCTTCGAGTGAGTTGGCATAT 58.625 43.478 0.00 0.00 0.00 1.78
626 627 3.785486 CATCTTCGAGTGAGTTGGCATA 58.215 45.455 0.00 0.00 0.00 3.14
627 628 2.625737 CATCTTCGAGTGAGTTGGCAT 58.374 47.619 0.00 0.00 0.00 4.40
628 629 1.941209 GCATCTTCGAGTGAGTTGGCA 60.941 52.381 0.00 0.00 0.00 4.92
629 630 0.723981 GCATCTTCGAGTGAGTTGGC 59.276 55.000 0.00 0.00 0.00 4.52
630 631 0.994995 CGCATCTTCGAGTGAGTTGG 59.005 55.000 0.00 0.00 0.00 3.77
631 632 0.994995 CCGCATCTTCGAGTGAGTTG 59.005 55.000 0.00 0.00 0.00 3.16
632 633 0.888619 TCCGCATCTTCGAGTGAGTT 59.111 50.000 0.00 0.00 0.00 3.01
633 634 1.107114 ATCCGCATCTTCGAGTGAGT 58.893 50.000 0.00 0.00 0.00 3.41
634 635 2.351253 CCTATCCGCATCTTCGAGTGAG 60.351 54.545 0.00 0.00 0.00 3.51
635 636 1.609072 CCTATCCGCATCTTCGAGTGA 59.391 52.381 0.00 0.00 0.00 3.41
636 637 1.336332 CCCTATCCGCATCTTCGAGTG 60.336 57.143 0.00 0.00 0.00 3.51
637 638 0.962489 CCCTATCCGCATCTTCGAGT 59.038 55.000 0.00 0.00 0.00 4.18
638 639 0.962489 ACCCTATCCGCATCTTCGAG 59.038 55.000 0.00 0.00 0.00 4.04
639 640 0.673985 CACCCTATCCGCATCTTCGA 59.326 55.000 0.00 0.00 0.00 3.71
640 641 0.389391 ACACCCTATCCGCATCTTCG 59.611 55.000 0.00 0.00 0.00 3.79
641 642 2.364324 TGTACACCCTATCCGCATCTTC 59.636 50.000 0.00 0.00 0.00 2.87
642 643 2.394632 TGTACACCCTATCCGCATCTT 58.605 47.619 0.00 0.00 0.00 2.40
643 644 2.082140 TGTACACCCTATCCGCATCT 57.918 50.000 0.00 0.00 0.00 2.90
644 645 2.037251 ACATGTACACCCTATCCGCATC 59.963 50.000 0.00 0.00 0.00 3.91
645 646 2.047061 ACATGTACACCCTATCCGCAT 58.953 47.619 0.00 0.00 0.00 4.73
646 647 1.491668 ACATGTACACCCTATCCGCA 58.508 50.000 0.00 0.00 0.00 5.69
647 648 3.006537 ACATACATGTACACCCTATCCGC 59.993 47.826 7.96 0.00 39.68 5.54
648 649 4.321750 GGACATACATGTACACCCTATCCG 60.322 50.000 7.96 0.00 41.36 4.18
649 650 4.591498 TGGACATACATGTACACCCTATCC 59.409 45.833 7.96 0.58 46.22 2.59
650 651 5.801531 TGGACATACATGTACACCCTATC 57.198 43.478 7.96 0.00 46.22 2.08
658 659 6.459066 AGTGCTCATATGGACATACATGTAC 58.541 40.000 7.96 0.00 41.95 2.90
659 660 6.670695 AGTGCTCATATGGACATACATGTA 57.329 37.500 8.27 8.27 41.95 2.29
660 661 5.557576 AGTGCTCATATGGACATACATGT 57.442 39.130 2.69 2.69 45.16 3.21
661 662 5.761726 ACAAGTGCTCATATGGACATACATG 59.238 40.000 2.13 0.00 32.39 3.21
662 663 5.933617 ACAAGTGCTCATATGGACATACAT 58.066 37.500 2.13 0.00 34.90 2.29
663 664 5.357742 ACAAGTGCTCATATGGACATACA 57.642 39.130 2.13 0.00 0.00 2.29
664 665 7.969536 AATACAAGTGCTCATATGGACATAC 57.030 36.000 2.13 0.00 0.00 2.39
665 666 7.992608 ACAAATACAAGTGCTCATATGGACATA 59.007 33.333 2.13 0.00 0.00 2.29
666 667 6.830324 ACAAATACAAGTGCTCATATGGACAT 59.170 34.615 2.13 0.00 0.00 3.06
667 668 6.179756 ACAAATACAAGTGCTCATATGGACA 58.820 36.000 2.13 0.00 0.00 4.02
668 669 6.683974 ACAAATACAAGTGCTCATATGGAC 57.316 37.500 2.13 0.00 0.00 4.02
669 670 7.495606 CACTACAAATACAAGTGCTCATATGGA 59.504 37.037 2.13 0.00 34.73 3.41
670 671 7.280876 ACACTACAAATACAAGTGCTCATATGG 59.719 37.037 2.13 0.00 43.53 2.74
671 672 8.118607 CACACTACAAATACAAGTGCTCATATG 58.881 37.037 0.00 0.00 43.53 1.78
672 673 7.824289 ACACACTACAAATACAAGTGCTCATAT 59.176 33.333 1.78 0.00 43.53 1.78
673 674 7.158697 ACACACTACAAATACAAGTGCTCATA 58.841 34.615 1.78 0.00 43.53 2.15
674 675 5.997746 ACACACTACAAATACAAGTGCTCAT 59.002 36.000 1.78 0.00 43.53 2.90
675 676 5.364778 ACACACTACAAATACAAGTGCTCA 58.635 37.500 1.78 0.00 43.53 4.26
676 677 5.924475 ACACACTACAAATACAAGTGCTC 57.076 39.130 1.78 0.00 43.53 4.26
677 678 7.795482 TTAACACACTACAAATACAAGTGCT 57.205 32.000 1.78 0.00 43.53 4.40
678 679 8.844441 TTTTAACACACTACAAATACAAGTGC 57.156 30.769 1.78 0.00 43.53 4.40
709 710 6.636044 GCTCATAAGGTAGAATGTACGTGTAC 59.364 42.308 0.00 3.21 36.63 2.90
710 711 6.319405 TGCTCATAAGGTAGAATGTACGTGTA 59.681 38.462 0.00 0.00 0.00 2.90
711 712 5.126545 TGCTCATAAGGTAGAATGTACGTGT 59.873 40.000 0.00 0.00 0.00 4.49
712 713 5.459107 GTGCTCATAAGGTAGAATGTACGTG 59.541 44.000 0.00 0.00 0.00 4.49
713 714 5.451520 GGTGCTCATAAGGTAGAATGTACGT 60.452 44.000 0.00 0.00 0.00 3.57
714 715 4.982916 GGTGCTCATAAGGTAGAATGTACG 59.017 45.833 0.00 0.00 0.00 3.67
715 716 5.914033 TGGTGCTCATAAGGTAGAATGTAC 58.086 41.667 0.00 0.00 0.00 2.90
716 717 6.516693 CGATGGTGCTCATAAGGTAGAATGTA 60.517 42.308 0.00 0.00 35.97 2.29
717 718 5.615289 GATGGTGCTCATAAGGTAGAATGT 58.385 41.667 0.00 0.00 35.97 2.71
718 719 4.687948 CGATGGTGCTCATAAGGTAGAATG 59.312 45.833 0.00 0.00 35.97 2.67
719 720 4.345257 ACGATGGTGCTCATAAGGTAGAAT 59.655 41.667 0.00 0.00 35.97 2.40
720 721 3.704566 ACGATGGTGCTCATAAGGTAGAA 59.295 43.478 0.00 0.00 35.97 2.10
721 722 3.296854 ACGATGGTGCTCATAAGGTAGA 58.703 45.455 0.00 0.00 35.97 2.59
722 723 3.735237 ACGATGGTGCTCATAAGGTAG 57.265 47.619 0.00 0.00 35.97 3.18
723 724 4.212716 ACTACGATGGTGCTCATAAGGTA 58.787 43.478 0.00 0.00 35.97 3.08
724 725 3.031736 ACTACGATGGTGCTCATAAGGT 58.968 45.455 0.00 0.00 35.97 3.50
725 726 3.643763 GACTACGATGGTGCTCATAAGG 58.356 50.000 0.00 0.00 35.97 2.69
726 727 3.243101 ACGACTACGATGGTGCTCATAAG 60.243 47.826 0.00 0.00 42.66 1.73
727 728 2.686405 ACGACTACGATGGTGCTCATAA 59.314 45.455 0.00 0.00 42.66 1.90
728 729 2.289820 GACGACTACGATGGTGCTCATA 59.710 50.000 0.00 0.00 42.66 2.15
729 730 1.065701 GACGACTACGATGGTGCTCAT 59.934 52.381 0.00 0.00 42.66 2.90
730 731 0.450583 GACGACTACGATGGTGCTCA 59.549 55.000 0.00 0.00 42.66 4.26
731 732 0.589229 CGACGACTACGATGGTGCTC 60.589 60.000 0.00 0.00 42.66 4.26
732 733 1.428219 CGACGACTACGATGGTGCT 59.572 57.895 0.00 0.00 42.66 4.40
733 734 1.585521 CCGACGACTACGATGGTGC 60.586 63.158 0.00 0.00 42.66 5.01
734 735 1.063649 CCCGACGACTACGATGGTG 59.936 63.158 0.00 0.00 42.66 4.17
735 736 2.117156 CCCCGACGACTACGATGGT 61.117 63.158 0.00 0.00 42.66 3.55
736 737 1.820906 TCCCCGACGACTACGATGG 60.821 63.158 0.00 0.00 42.66 3.51
737 738 1.354506 GTCCCCGACGACTACGATG 59.645 63.158 0.00 0.00 42.66 3.84
738 739 0.677731 TTGTCCCCGACGACTACGAT 60.678 55.000 0.00 0.00 42.66 3.73
739 740 0.888736 TTTGTCCCCGACGACTACGA 60.889 55.000 0.00 0.00 42.66 3.43
740 741 0.730494 GTTTGTCCCCGACGACTACG 60.730 60.000 0.00 0.00 45.75 3.51
741 742 0.314935 TGTTTGTCCCCGACGACTAC 59.685 55.000 0.00 0.00 34.95 2.73
742 743 0.314935 GTGTTTGTCCCCGACGACTA 59.685 55.000 0.00 0.00 34.95 2.59
743 744 1.068585 GTGTTTGTCCCCGACGACT 59.931 57.895 0.00 0.00 34.95 4.18
744 745 2.305127 CGTGTTTGTCCCCGACGAC 61.305 63.158 0.00 0.00 34.95 4.34
745 746 2.027897 CGTGTTTGTCCCCGACGA 59.972 61.111 0.00 0.00 34.95 4.20
746 747 2.419057 TACCGTGTTTGTCCCCGACG 62.419 60.000 0.00 0.00 34.95 5.12
747 748 0.249826 TTACCGTGTTTGTCCCCGAC 60.250 55.000 0.00 0.00 0.00 4.79
748 749 0.467384 TTTACCGTGTTTGTCCCCGA 59.533 50.000 0.00 0.00 0.00 5.14
749 750 0.869730 CTTTACCGTGTTTGTCCCCG 59.130 55.000 0.00 0.00 0.00 5.73
750 751 2.148768 CTCTTTACCGTGTTTGTCCCC 58.851 52.381 0.00 0.00 0.00 4.81
762 763 8.985805 TCTAATCGAAAACAAACTCTCTTTACC 58.014 33.333 0.00 0.00 0.00 2.85
768 769 9.535270 CAGATTTCTAATCGAAAACAAACTCTC 57.465 33.333 0.00 0.00 44.25 3.20
770 771 9.665264 AACAGATTTCTAATCGAAAACAAACTC 57.335 29.630 0.00 0.00 44.25 3.01
771 772 9.665264 GAACAGATTTCTAATCGAAAACAAACT 57.335 29.630 0.00 0.00 44.25 2.66
772 773 8.618952 CGAACAGATTTCTAATCGAAAACAAAC 58.381 33.333 7.90 0.00 44.25 2.93
818 819 4.741185 GGAACGTATATGTGCACGAACATA 59.259 41.667 13.13 4.75 44.82 2.29
927 929 9.355215 CTATGAGGAATATAAATACGTGGTCAC 57.645 37.037 0.00 0.00 0.00 3.67
928 930 9.304335 TCTATGAGGAATATAAATACGTGGTCA 57.696 33.333 0.00 0.00 0.00 4.02
967 969 2.710971 CGATGCGGCGTGATCGATC 61.711 63.158 27.95 18.72 43.36 3.69
1486 1491 1.338200 GCTCCAGTCGTGATCCAACTT 60.338 52.381 0.00 0.00 0.00 2.66
1587 1595 1.557443 CGCACACCAAGACGACCTTC 61.557 60.000 0.00 0.00 31.42 3.46
1629 1637 1.604755 GTCTCCGATGAGTAGACGCAT 59.395 52.381 0.00 0.00 39.75 4.73
1674 1682 2.159282 AGTGTGATACGGAACATCGGTC 60.159 50.000 0.00 0.00 32.10 4.79
1740 1748 7.227910 GTCTGAGTACCAAAAATAAACCAGTGA 59.772 37.037 0.00 0.00 0.00 3.41
1794 1802 1.825474 TCTACAACAGCTAGGGTCTGC 59.175 52.381 0.00 0.00 35.04 4.26
1799 1807 1.134670 GCACCTCTACAACAGCTAGGG 60.135 57.143 1.67 0.00 0.00 3.53
1824 1832 1.770061 TGATGACTAGCATGGGCATCA 59.230 47.619 13.22 13.22 44.61 3.07
1872 1883 1.074775 AACGATGAAGCCAAGCCCA 59.925 52.632 0.00 0.00 0.00 5.36
1899 1910 3.130516 CCCATAGTTGAGCTACGAAGTCA 59.869 47.826 0.00 0.00 43.93 3.41
2010 2021 3.638160 ACACTGTTTGCAGATTTGTCCAT 59.362 39.130 1.30 0.00 45.28 3.41
2142 2159 0.179094 TGGATGTCGTACATTCGGCC 60.179 55.000 0.00 0.00 39.27 6.13
2164 2181 4.400529 AAAAACTTGTGAATGGGTGGAC 57.599 40.909 0.00 0.00 0.00 4.02
2208 2225 8.728596 AAGACTATATGCCTTATCCTTGTACT 57.271 34.615 0.00 0.00 0.00 2.73
2245 2262 0.471211 AGACACGAAGGGGACTCCAA 60.471 55.000 0.00 0.00 42.68 3.53
2255 2272 4.617645 GCTACAGTAACAGAAGACACGAAG 59.382 45.833 0.00 0.00 0.00 3.79
2454 2481 9.146984 CGTAGTTCTTGTCAATTTCCAACTATA 57.853 33.333 0.00 0.00 29.96 1.31
2455 2482 7.660208 ACGTAGTTCTTGTCAATTTCCAACTAT 59.340 33.333 0.00 0.00 37.78 2.12
2456 2483 6.987992 ACGTAGTTCTTGTCAATTTCCAACTA 59.012 34.615 0.00 0.00 37.78 2.24
2469 2496 1.341531 AGCTGCTCACGTAGTTCTTGT 59.658 47.619 0.00 0.00 41.61 3.16
2506 2533 4.895668 ATGCCAATTTGGTCACTGATTT 57.104 36.364 16.62 0.00 40.46 2.17
2599 2626 8.632679 TCAAAACATGATAAAAGAACAAGAGCT 58.367 29.630 0.00 0.00 31.50 4.09
2640 2667 9.586435 CAAAGATTAAAACATATTCCCTTCACC 57.414 33.333 0.00 0.00 0.00 4.02
2672 2699 8.215050 TGGTTCTCCAGAGTTAAATAAAGTGAA 58.785 33.333 0.00 0.00 39.03 3.18
2791 2821 0.106419 TGTGGTTCAGTGTTTCCCCC 60.106 55.000 0.00 0.00 0.00 5.40
2793 2823 0.661020 CGTGTGGTTCAGTGTTTCCC 59.339 55.000 0.00 0.00 0.00 3.97
2992 3022 2.909662 ACTTCTCTCCCAGAAAGAAGGG 59.090 50.000 11.33 0.00 46.62 3.95
3016 3046 1.555075 AGTTTAGCCAGAATCCAGCGA 59.445 47.619 0.00 0.00 0.00 4.93
3017 3047 2.029838 AGTTTAGCCAGAATCCAGCG 57.970 50.000 0.00 0.00 0.00 5.18
3026 3056 4.402474 CCCTCCCAATTTAAGTTTAGCCAG 59.598 45.833 0.00 0.00 0.00 4.85
3052 3082 2.568956 CACTGTTCCCTCTTCATCCTCA 59.431 50.000 0.00 0.00 0.00 3.86
3066 3146 3.988379 TGAACTGCAATTCCACTGTTC 57.012 42.857 5.30 4.95 42.04 3.18
3104 3184 7.351952 TGGACATCTTAGCTAGGAGTACTTAA 58.648 38.462 11.56 0.00 0.00 1.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.