Multiple sequence alignment - TraesCS1B01G218400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G218400 chr1B 100.000 1840 0 0 1 1840 395942587 395944426 0.000000e+00 3398
1 TraesCS1B01G218400 chr1B 100.000 141 0 0 2202 2342 395944788 395944928 6.420000e-66 261
2 TraesCS1B01G218400 chr1B 91.209 182 15 1 1596 1777 148119921 148119741 1.800000e-61 246
3 TraesCS1B01G218400 chr1B 93.617 141 9 0 2202 2342 401621536 401621676 6.560000e-51 211
4 TraesCS1B01G218400 chr1B 93.617 141 9 0 2202 2342 623198264 623198124 6.560000e-51 211
5 TraesCS1B01G218400 chr1D 95.902 1025 30 6 561 1582 294201318 294202333 0.000000e+00 1650
6 TraesCS1B01G218400 chr1D 90.270 555 46 6 1 552 294200483 294201032 0.000000e+00 719
7 TraesCS1B01G218400 chr1D 93.662 142 8 1 2202 2342 296546598 296546457 6.560000e-51 211
8 TraesCS1B01G218400 chr1A 92.420 1029 59 11 582 1596 366987961 366988984 0.000000e+00 1450
9 TraesCS1B01G218400 chr1A 88.043 184 20 1 1594 1775 22645889 22645706 1.410000e-52 217
10 TraesCS1B01G218400 chr1A 87.568 185 20 2 1588 1770 270613115 270612932 6.560000e-51 211
11 TraesCS1B01G218400 chr5D 86.355 557 64 8 1 552 285021987 285022536 4.310000e-167 597
12 TraesCS1B01G218400 chr5D 86.331 556 62 8 1 552 132930759 132931304 5.570000e-166 593
13 TraesCS1B01G218400 chr5D 85.267 543 68 9 1 539 216052869 216053403 1.220000e-152 549
14 TraesCS1B01G218400 chr5D 87.912 182 21 1 1596 1777 238222522 238222342 1.820000e-51 213
15 TraesCS1B01G218400 chr5D 94.697 132 7 0 2211 2342 238222262 238222131 3.050000e-49 206
16 TraesCS1B01G218400 chr5D 92.908 141 10 0 2202 2342 323869174 323869034 3.050000e-49 206
17 TraesCS1B01G218400 chr2A 85.870 552 64 10 9 552 656830671 656831216 2.020000e-160 575
18 TraesCS1B01G218400 chr2D 85.612 556 68 9 1 552 507862346 507862893 7.260000e-160 573
19 TraesCS1B01G218400 chr2D 84.588 558 74 10 1 553 590277364 590277914 5.690000e-151 544
20 TraesCS1B01G218400 chr2D 88.482 191 21 1 1587 1777 477296086 477295897 1.810000e-56 230
21 TraesCS1B01G218400 chr3A 84.436 559 69 14 1 552 494720756 494721303 3.430000e-148 534
22 TraesCS1B01G218400 chr4D 84.436 559 68 15 1 551 132208404 132207857 1.230000e-147 532
23 TraesCS1B01G218400 chr5A 89.362 188 17 3 1590 1776 412106015 412106200 1.400000e-57 233
24 TraesCS1B01G218400 chr4B 88.172 186 19 3 1591 1775 601096906 601097089 3.920000e-53 219
25 TraesCS1B01G218400 chr4B 87.363 182 22 1 1596 1777 529569803 529569623 8.480000e-50 207
26 TraesCS1B01G218400 chr7A 88.043 184 19 2 1596 1777 24448531 24448349 5.070000e-52 215
27 TraesCS1B01G218400 chr5B 94.853 136 7 0 2207 2342 272432485 272432620 1.820000e-51 213
28 TraesCS1B01G218400 chr7D 93.617 141 9 0 2202 2342 616371495 616371635 6.560000e-51 211
29 TraesCS1B01G218400 chr7D 93.571 140 9 0 2202 2341 53755001 53754862 2.360000e-50 209
30 TraesCS1B01G218400 chr3B 93.617 141 8 1 2202 2342 561043224 561043085 2.360000e-50 209


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G218400 chr1B 395942587 395944928 2341 False 1829.5 3398 100.000 1 2342 2 chr1B.!!$F2 2341
1 TraesCS1B01G218400 chr1D 294200483 294202333 1850 False 1184.5 1650 93.086 1 1582 2 chr1D.!!$F1 1581
2 TraesCS1B01G218400 chr1A 366987961 366988984 1023 False 1450.0 1450 92.420 582 1596 1 chr1A.!!$F1 1014
3 TraesCS1B01G218400 chr5D 285021987 285022536 549 False 597.0 597 86.355 1 552 1 chr5D.!!$F3 551
4 TraesCS1B01G218400 chr5D 132930759 132931304 545 False 593.0 593 86.331 1 552 1 chr5D.!!$F1 551
5 TraesCS1B01G218400 chr5D 216052869 216053403 534 False 549.0 549 85.267 1 539 1 chr5D.!!$F2 538
6 TraesCS1B01G218400 chr2A 656830671 656831216 545 False 575.0 575 85.870 9 552 1 chr2A.!!$F1 543
7 TraesCS1B01G218400 chr2D 507862346 507862893 547 False 573.0 573 85.612 1 552 1 chr2D.!!$F1 551
8 TraesCS1B01G218400 chr2D 590277364 590277914 550 False 544.0 544 84.588 1 553 1 chr2D.!!$F2 552
9 TraesCS1B01G218400 chr3A 494720756 494721303 547 False 534.0 534 84.436 1 552 1 chr3A.!!$F1 551
10 TraesCS1B01G218400 chr4D 132207857 132208404 547 True 532.0 532 84.436 1 551 1 chr4D.!!$R1 550

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
616 903 0.392706 ATGAGACACACAAGCACGGA 59.607 50.0 0.0 0.0 0.0 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2243 2544 0.030101 CGACGAGGAGGATTGAGCTC 59.97 60.0 6.82 6.82 0.0 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
124 126 3.632145 GCCACCATTACAACAAGGGATAG 59.368 47.826 0.00 0.00 0.00 2.08
126 128 4.640201 CCACCATTACAACAAGGGATAGTG 59.360 45.833 0.00 0.00 0.00 2.74
209 212 7.552330 GCAAGGAGAGAAGAGACAGATATTTTT 59.448 37.037 0.00 0.00 0.00 1.94
272 278 2.289631 TGGTGTGCTTCAATCTCGATGT 60.290 45.455 0.00 0.00 0.00 3.06
291 297 2.037511 TGTGGTATCGTTCGAAACCCTT 59.962 45.455 12.96 0.00 0.00 3.95
316 322 2.290367 TGACATGAAGCACTGGAAAACG 59.710 45.455 0.00 0.00 0.00 3.60
320 326 2.360844 TGAAGCACTGGAAAACGTTGA 58.639 42.857 0.00 0.00 0.00 3.18
344 350 4.147321 AGGTGATGACTGCTTGTTTGATT 58.853 39.130 0.00 0.00 0.00 2.57
359 365 9.037737 GCTTGTTTGATTATGCATAACATGATT 57.962 29.630 21.10 4.49 40.06 2.57
404 411 4.287552 ACATCTACGACCTAGGGTTTGAT 58.712 43.478 14.81 7.17 35.25 2.57
405 412 5.452255 ACATCTACGACCTAGGGTTTGATA 58.548 41.667 14.81 0.00 35.25 2.15
406 413 6.075984 ACATCTACGACCTAGGGTTTGATAT 58.924 40.000 14.81 0.00 35.25 1.63
407 414 6.553852 ACATCTACGACCTAGGGTTTGATATT 59.446 38.462 14.81 0.00 35.25 1.28
438 445 4.340381 GGTGAAAATATTGAGCCTGAGCAT 59.660 41.667 0.00 0.00 43.56 3.79
468 478 3.919804 CGGCGACATTTGAACAATTCATT 59.080 39.130 0.00 0.00 39.84 2.57
501 511 6.418141 TCATGAAATGCGTAATTGACATACG 58.582 36.000 0.00 4.58 46.21 3.06
556 566 2.393271 GTGGACTCACATTGGGAGAG 57.607 55.000 22.56 11.43 43.13 3.20
557 567 1.902508 GTGGACTCACATTGGGAGAGA 59.097 52.381 22.56 2.83 43.13 3.10
559 569 2.225369 TGGACTCACATTGGGAGAGAGA 60.225 50.000 22.56 0.74 36.26 3.10
607 894 3.340337 TCGATCATCGATGAGACACAC 57.660 47.619 30.11 16.23 44.82 3.82
616 903 0.392706 ATGAGACACACAAGCACGGA 59.607 50.000 0.00 0.00 0.00 4.69
881 1176 7.103641 TGAGTATAGCCGAAGAACAAAATTCT 58.896 34.615 0.00 0.00 0.00 2.40
883 1178 3.923017 AGCCGAAGAACAAAATTCTGG 57.077 42.857 0.00 0.00 0.00 3.86
901 1196 8.485578 AATTCTGGTTTAAATACTTTGGTCCA 57.514 30.769 0.00 0.00 0.00 4.02
1368 1664 3.762407 TGAGAAGGATCGGTTGTTTCA 57.238 42.857 0.00 0.00 0.00 2.69
1464 1760 3.117491 CTTGAGAACAAGGTGCTGAGA 57.883 47.619 0.00 0.00 46.67 3.27
1473 1769 0.034670 AGGTGCTGAGATTTCTGCCC 60.035 55.000 11.78 11.78 44.85 5.36
1475 1771 1.093159 GTGCTGAGATTTCTGCCCAG 58.907 55.000 11.78 0.00 44.85 4.45
1476 1772 0.694771 TGCTGAGATTTCTGCCCAGT 59.305 50.000 11.78 0.00 44.85 4.00
1535 1831 6.985117 TCATCAGAAGCAAAATAAAAGCAGT 58.015 32.000 0.00 0.00 0.00 4.40
1565 1866 5.408880 TCACACTATGTATTCGGGTTCAA 57.591 39.130 0.00 0.00 0.00 2.69
1584 1885 4.980590 TCAAATTACAGATTTCGCGCAAT 58.019 34.783 8.75 2.96 0.00 3.56
1587 1888 3.383546 TTACAGATTTCGCGCAATCAC 57.616 42.857 28.47 8.00 35.85 3.06
1588 1889 1.155889 ACAGATTTCGCGCAATCACA 58.844 45.000 28.47 0.00 35.85 3.58
1589 1890 1.135972 ACAGATTTCGCGCAATCACAC 60.136 47.619 28.47 6.98 35.85 3.82
1590 1891 1.129251 CAGATTTCGCGCAATCACACT 59.871 47.619 28.47 9.31 35.85 3.55
1592 1893 1.906966 GATTTCGCGCAATCACACTTG 59.093 47.619 23.56 0.00 33.87 3.16
1593 1894 0.660488 TTTCGCGCAATCACACTTGT 59.340 45.000 8.75 0.00 0.00 3.16
1595 1896 1.503294 TCGCGCAATCACACTTGTTA 58.497 45.000 8.75 0.00 0.00 2.41
1596 1897 1.459209 TCGCGCAATCACACTTGTTAG 59.541 47.619 8.75 0.00 0.00 2.34
1597 1898 1.459209 CGCGCAATCACACTTGTTAGA 59.541 47.619 8.75 0.00 0.00 2.10
1598 1899 2.472886 CGCGCAATCACACTTGTTAGAG 60.473 50.000 8.75 0.00 0.00 2.43
1599 1900 2.726066 GCGCAATCACACTTGTTAGAGC 60.726 50.000 0.30 0.00 0.00 4.09
1600 1901 2.480037 CGCAATCACACTTGTTAGAGCA 59.520 45.455 0.00 0.00 0.00 4.26
1601 1902 3.125829 CGCAATCACACTTGTTAGAGCAT 59.874 43.478 0.00 0.00 0.00 3.79
1602 1903 4.656041 GCAATCACACTTGTTAGAGCATC 58.344 43.478 0.00 0.00 0.00 3.91
1615 1916 0.678950 GAGCATCTCTAGCTGACCCC 59.321 60.000 0.00 0.00 43.58 4.95
1616 1917 1.112315 AGCATCTCTAGCTGACCCCG 61.112 60.000 0.00 0.00 41.61 5.73
1617 1918 1.365633 CATCTCTAGCTGACCCCGC 59.634 63.158 0.00 0.00 0.00 6.13
1618 1919 1.075970 ATCTCTAGCTGACCCCGCA 60.076 57.895 0.00 0.00 0.00 5.69
1619 1920 0.687757 ATCTCTAGCTGACCCCGCAA 60.688 55.000 0.00 0.00 0.00 4.85
1620 1921 0.902984 TCTCTAGCTGACCCCGCAAA 60.903 55.000 0.00 0.00 0.00 3.68
1621 1922 0.036388 CTCTAGCTGACCCCGCAAAA 60.036 55.000 0.00 0.00 0.00 2.44
1622 1923 0.618458 TCTAGCTGACCCCGCAAAAT 59.382 50.000 0.00 0.00 0.00 1.82
1623 1924 1.017387 CTAGCTGACCCCGCAAAATC 58.983 55.000 0.00 0.00 0.00 2.17
1624 1925 0.393808 TAGCTGACCCCGCAAAATCC 60.394 55.000 0.00 0.00 0.00 3.01
1625 1926 2.710902 GCTGACCCCGCAAAATCCC 61.711 63.158 0.00 0.00 0.00 3.85
1626 1927 2.360600 TGACCCCGCAAAATCCCG 60.361 61.111 0.00 0.00 0.00 5.14
1627 1928 2.045731 GACCCCGCAAAATCCCGA 60.046 61.111 0.00 0.00 0.00 5.14
1628 1929 2.360726 ACCCCGCAAAATCCCGAC 60.361 61.111 0.00 0.00 0.00 4.79
1629 1930 3.138128 CCCCGCAAAATCCCGACC 61.138 66.667 0.00 0.00 0.00 4.79
1630 1931 3.138128 CCCGCAAAATCCCGACCC 61.138 66.667 0.00 0.00 0.00 4.46
1631 1932 3.505184 CCGCAAAATCCCGACCCG 61.505 66.667 0.00 0.00 0.00 5.28
1632 1933 4.174129 CGCAAAATCCCGACCCGC 62.174 66.667 0.00 0.00 0.00 6.13
1633 1934 3.059386 GCAAAATCCCGACCCGCA 61.059 61.111 0.00 0.00 0.00 5.69
1634 1935 2.414785 GCAAAATCCCGACCCGCAT 61.415 57.895 0.00 0.00 0.00 4.73
1635 1936 1.098712 GCAAAATCCCGACCCGCATA 61.099 55.000 0.00 0.00 0.00 3.14
1636 1937 1.384525 CAAAATCCCGACCCGCATAA 58.615 50.000 0.00 0.00 0.00 1.90
1637 1938 1.333619 CAAAATCCCGACCCGCATAAG 59.666 52.381 0.00 0.00 0.00 1.73
1638 1939 0.818040 AAATCCCGACCCGCATAAGC 60.818 55.000 0.00 0.00 37.42 3.09
1639 1940 2.676163 AATCCCGACCCGCATAAGCC 62.676 60.000 0.00 0.00 37.52 4.35
1641 1942 4.524318 CCGACCCGCATAAGCCGT 62.524 66.667 0.00 0.00 37.52 5.68
1642 1943 2.510691 CGACCCGCATAAGCCGTT 60.511 61.111 0.00 0.00 37.52 4.44
1643 1944 2.104253 CGACCCGCATAAGCCGTTT 61.104 57.895 0.00 0.00 37.52 3.60
1644 1945 0.806884 CGACCCGCATAAGCCGTTTA 60.807 55.000 0.00 0.00 37.52 2.01
1645 1946 1.589803 GACCCGCATAAGCCGTTTAT 58.410 50.000 0.00 0.00 37.52 1.40
1646 1947 2.758009 GACCCGCATAAGCCGTTTATA 58.242 47.619 0.00 0.00 37.52 0.98
1647 1948 2.735134 GACCCGCATAAGCCGTTTATAG 59.265 50.000 0.00 0.00 37.52 1.31
1648 1949 2.073816 CCCGCATAAGCCGTTTATAGG 58.926 52.381 0.00 3.25 37.52 2.57
1649 1950 2.549349 CCCGCATAAGCCGTTTATAGGT 60.549 50.000 7.44 0.00 37.52 3.08
1650 1951 2.735134 CCGCATAAGCCGTTTATAGGTC 59.265 50.000 0.00 0.00 37.52 3.85
1651 1952 2.407361 CGCATAAGCCGTTTATAGGTCG 59.593 50.000 0.00 0.00 37.52 4.79
1652 1953 3.645884 GCATAAGCCGTTTATAGGTCGA 58.354 45.455 0.00 0.00 30.75 4.20
1653 1954 3.427863 GCATAAGCCGTTTATAGGTCGAC 59.572 47.826 7.13 7.13 30.75 4.20
1654 1955 2.199291 AAGCCGTTTATAGGTCGACG 57.801 50.000 9.92 0.00 35.44 5.12
1655 1956 1.382522 AGCCGTTTATAGGTCGACGA 58.617 50.000 9.92 0.00 37.69 4.20
1656 1957 1.745087 AGCCGTTTATAGGTCGACGAA 59.255 47.619 9.92 0.00 37.69 3.85
1657 1958 2.114825 GCCGTTTATAGGTCGACGAAG 58.885 52.381 9.92 0.00 37.69 3.79
1658 1959 2.223340 GCCGTTTATAGGTCGACGAAGA 60.223 50.000 9.92 0.00 37.69 2.87
1659 1960 3.549625 GCCGTTTATAGGTCGACGAAGAT 60.550 47.826 9.92 2.62 37.69 2.40
1660 1961 4.217497 CCGTTTATAGGTCGACGAAGATC 58.783 47.826 9.92 0.00 37.69 2.75
1661 1962 4.024218 CCGTTTATAGGTCGACGAAGATCT 60.024 45.833 9.92 2.11 37.69 2.75
1662 1963 5.138788 CGTTTATAGGTCGACGAAGATCTC 58.861 45.833 9.92 0.00 37.69 2.75
1671 1972 1.999051 CGAAGATCTCGTTTGCGGG 59.001 57.895 0.00 0.00 42.89 6.13
1672 1973 0.736325 CGAAGATCTCGTTTGCGGGT 60.736 55.000 0.00 0.00 42.89 5.28
1673 1974 1.000145 GAAGATCTCGTTTGCGGGTC 59.000 55.000 0.00 0.00 40.06 4.46
1674 1975 0.736325 AAGATCTCGTTTGCGGGTCG 60.736 55.000 0.00 0.00 40.06 4.79
1675 1976 1.153901 GATCTCGTTTGCGGGTCGA 60.154 57.895 0.00 0.00 40.06 4.20
1676 1977 0.734942 GATCTCGTTTGCGGGTCGAA 60.735 55.000 0.00 0.00 40.06 3.71
1677 1978 0.320073 ATCTCGTTTGCGGGTCGAAA 60.320 50.000 0.00 0.00 40.06 3.46
1678 1979 0.530211 TCTCGTTTGCGGGTCGAAAA 60.530 50.000 0.00 0.00 40.06 2.29
1680 1981 4.199130 GTTTGCGGGTCGAAAACG 57.801 55.556 7.95 0.00 43.85 3.60
1681 1982 1.352753 GTTTGCGGGTCGAAAACGT 59.647 52.632 7.95 0.00 43.85 3.99
1682 1983 0.655337 GTTTGCGGGTCGAAAACGTC 60.655 55.000 7.95 0.00 43.85 4.34
1683 1984 0.810823 TTTGCGGGTCGAAAACGTCT 60.811 50.000 0.00 0.00 28.61 4.18
1684 1985 1.492319 TTGCGGGTCGAAAACGTCTG 61.492 55.000 0.00 0.00 0.00 3.51
1685 1986 2.851104 CGGGTCGAAAACGTCTGC 59.149 61.111 0.00 0.00 0.00 4.26
1686 1987 2.851104 GGGTCGAAAACGTCTGCG 59.149 61.111 0.00 0.00 44.93 5.18
1687 1988 2.664436 GGGTCGAAAACGTCTGCGG 61.664 63.158 0.00 0.00 43.45 5.69
1688 1989 2.170273 GTCGAAAACGTCTGCGGC 59.830 61.111 0.00 0.00 43.45 6.53
1689 1990 2.279584 TCGAAAACGTCTGCGGCA 60.280 55.556 1.29 1.29 43.45 5.69
1690 1991 2.170985 CGAAAACGTCTGCGGCAG 59.829 61.111 23.72 23.72 43.45 4.85
1691 1992 2.307309 CGAAAACGTCTGCGGCAGA 61.307 57.895 27.76 27.76 43.45 4.26
1692 1993 1.827315 CGAAAACGTCTGCGGCAGAA 61.827 55.000 32.30 15.18 42.46 3.02
1693 1994 0.384353 GAAAACGTCTGCGGCAGAAC 60.384 55.000 32.30 23.49 42.46 3.01
1694 1995 1.092921 AAAACGTCTGCGGCAGAACA 61.093 50.000 32.30 10.09 42.46 3.18
1695 1996 1.498865 AAACGTCTGCGGCAGAACAG 61.499 55.000 32.30 26.12 42.46 3.16
1696 1997 2.049156 CGTCTGCGGCAGAACAGA 60.049 61.111 32.30 9.56 42.46 3.41
1697 1998 1.664649 CGTCTGCGGCAGAACAGAA 60.665 57.895 32.30 8.52 44.14 3.02
1698 1999 1.221466 CGTCTGCGGCAGAACAGAAA 61.221 55.000 32.30 7.74 44.14 2.52
1699 2000 0.235926 GTCTGCGGCAGAACAGAAAC 59.764 55.000 32.30 16.06 44.14 2.78
1700 2001 0.884704 TCTGCGGCAGAACAGAAACC 60.885 55.000 29.13 0.00 39.89 3.27
1701 2002 2.175184 CTGCGGCAGAACAGAAACCG 62.175 60.000 25.33 0.00 46.50 4.44
1702 2003 2.251642 GCGGCAGAACAGAAACCGT 61.252 57.895 0.00 0.00 45.53 4.83
1703 2004 0.947180 GCGGCAGAACAGAAACCGTA 60.947 55.000 0.00 0.00 45.53 4.02
1704 2005 1.722011 CGGCAGAACAGAAACCGTAT 58.278 50.000 0.00 0.00 39.05 3.06
1705 2006 2.883574 CGGCAGAACAGAAACCGTATA 58.116 47.619 0.00 0.00 39.05 1.47
1706 2007 3.454375 CGGCAGAACAGAAACCGTATAT 58.546 45.455 0.00 0.00 39.05 0.86
1707 2008 3.245284 CGGCAGAACAGAAACCGTATATG 59.755 47.826 0.00 0.00 39.05 1.78
1708 2009 4.439057 GGCAGAACAGAAACCGTATATGA 58.561 43.478 0.00 0.00 0.00 2.15
1709 2010 4.873827 GGCAGAACAGAAACCGTATATGAA 59.126 41.667 0.00 0.00 0.00 2.57
1710 2011 5.353123 GGCAGAACAGAAACCGTATATGAAA 59.647 40.000 0.00 0.00 0.00 2.69
1711 2012 6.248631 GCAGAACAGAAACCGTATATGAAAC 58.751 40.000 0.00 0.00 0.00 2.78
1712 2013 6.092259 GCAGAACAGAAACCGTATATGAAACT 59.908 38.462 0.00 0.00 0.00 2.66
1713 2014 7.456253 CAGAACAGAAACCGTATATGAAACTG 58.544 38.462 0.00 0.00 0.00 3.16
1714 2015 5.796350 ACAGAAACCGTATATGAAACTGC 57.204 39.130 0.00 0.00 0.00 4.40
1715 2016 5.242434 ACAGAAACCGTATATGAAACTGCA 58.758 37.500 0.00 0.00 0.00 4.41
1716 2017 5.880332 ACAGAAACCGTATATGAAACTGCAT 59.120 36.000 0.00 0.00 0.00 3.96
1717 2018 7.045416 ACAGAAACCGTATATGAAACTGCATA 58.955 34.615 0.00 0.00 35.41 3.14
1718 2019 7.551262 ACAGAAACCGTATATGAAACTGCATAA 59.449 33.333 0.00 0.00 34.67 1.90
1719 2020 8.559536 CAGAAACCGTATATGAAACTGCATAAT 58.440 33.333 0.00 0.00 34.67 1.28
1720 2021 9.120538 AGAAACCGTATATGAAACTGCATAATT 57.879 29.630 0.00 0.00 34.67 1.40
1721 2022 9.730420 GAAACCGTATATGAAACTGCATAATTT 57.270 29.630 0.00 0.00 34.67 1.82
1722 2023 9.515020 AAACCGTATATGAAACTGCATAATTTG 57.485 29.630 0.00 0.00 34.67 2.32
1723 2024 8.445275 ACCGTATATGAAACTGCATAATTTGA 57.555 30.769 0.00 0.00 34.67 2.69
1724 2025 8.898761 ACCGTATATGAAACTGCATAATTTGAA 58.101 29.630 0.00 0.00 34.67 2.69
1725 2026 9.385902 CCGTATATGAAACTGCATAATTTGAAG 57.614 33.333 0.00 0.00 36.99 3.02
1731 2032 8.939201 TGAAACTGCATAATTTGAAGAAACAA 57.061 26.923 0.00 0.00 34.18 2.83
1732 2033 9.376075 TGAAACTGCATAATTTGAAGAAACAAA 57.624 25.926 0.00 0.00 42.58 2.83
1736 2037 8.702438 ACTGCATAATTTGAAGAAACAAAATCG 58.298 29.630 0.00 0.00 41.88 3.34
1737 2038 7.508965 TGCATAATTTGAAGAAACAAAATCGC 58.491 30.769 0.00 0.00 41.88 4.58
1738 2039 7.170489 TGCATAATTTGAAGAAACAAAATCGCA 59.830 29.630 0.00 0.00 41.88 5.10
1739 2040 7.685304 GCATAATTTGAAGAAACAAAATCGCAG 59.315 33.333 0.00 0.00 41.88 5.18
1740 2041 6.529463 AATTTGAAGAAACAAAATCGCAGG 57.471 33.333 0.00 0.00 41.88 4.85
1741 2042 4.909696 TTGAAGAAACAAAATCGCAGGA 57.090 36.364 0.00 0.00 0.00 3.86
1742 2043 4.488126 TGAAGAAACAAAATCGCAGGAG 57.512 40.909 0.00 0.00 0.00 3.69
1743 2044 4.133820 TGAAGAAACAAAATCGCAGGAGA 58.866 39.130 0.00 0.00 0.00 3.71
1744 2045 4.578516 TGAAGAAACAAAATCGCAGGAGAA 59.421 37.500 0.00 0.00 0.00 2.87
1745 2046 5.067153 TGAAGAAACAAAATCGCAGGAGAAA 59.933 36.000 0.00 0.00 0.00 2.52
1746 2047 5.712152 AGAAACAAAATCGCAGGAGAAAT 57.288 34.783 0.00 0.00 0.00 2.17
1747 2048 6.817765 AGAAACAAAATCGCAGGAGAAATA 57.182 33.333 0.00 0.00 0.00 1.40
1748 2049 6.846350 AGAAACAAAATCGCAGGAGAAATAG 58.154 36.000 0.00 0.00 0.00 1.73
1749 2050 4.622701 ACAAAATCGCAGGAGAAATAGC 57.377 40.909 0.00 0.00 0.00 2.97
1750 2051 4.009675 ACAAAATCGCAGGAGAAATAGCA 58.990 39.130 0.00 0.00 0.00 3.49
1751 2052 4.458989 ACAAAATCGCAGGAGAAATAGCAA 59.541 37.500 0.00 0.00 0.00 3.91
1752 2053 5.126061 ACAAAATCGCAGGAGAAATAGCAAT 59.874 36.000 0.00 0.00 0.00 3.56
1753 2054 5.429957 AAATCGCAGGAGAAATAGCAATC 57.570 39.130 0.00 0.00 0.00 2.67
1754 2055 3.541996 TCGCAGGAGAAATAGCAATCA 57.458 42.857 0.00 0.00 0.00 2.57
1755 2056 4.077300 TCGCAGGAGAAATAGCAATCAT 57.923 40.909 0.00 0.00 0.00 2.45
1756 2057 5.213891 TCGCAGGAGAAATAGCAATCATA 57.786 39.130 0.00 0.00 0.00 2.15
1757 2058 5.233225 TCGCAGGAGAAATAGCAATCATAG 58.767 41.667 0.00 0.00 0.00 2.23
1758 2059 4.993584 CGCAGGAGAAATAGCAATCATAGT 59.006 41.667 0.00 0.00 0.00 2.12
1759 2060 6.015434 TCGCAGGAGAAATAGCAATCATAGTA 60.015 38.462 0.00 0.00 0.00 1.82
1760 2061 6.309980 CGCAGGAGAAATAGCAATCATAGTAG 59.690 42.308 0.00 0.00 0.00 2.57
1761 2062 7.158021 GCAGGAGAAATAGCAATCATAGTAGT 58.842 38.462 0.00 0.00 0.00 2.73
1762 2063 7.659390 GCAGGAGAAATAGCAATCATAGTAGTT 59.341 37.037 0.00 0.00 0.00 2.24
1763 2064 9.202273 CAGGAGAAATAGCAATCATAGTAGTTC 57.798 37.037 0.00 0.00 0.00 3.01
1764 2065 8.928448 AGGAGAAATAGCAATCATAGTAGTTCA 58.072 33.333 0.00 0.00 0.00 3.18
1765 2066 9.717942 GGAGAAATAGCAATCATAGTAGTTCAT 57.282 33.333 0.00 0.00 0.00 2.57
1769 2070 9.836864 AAATAGCAATCATAGTAGTTCATCACA 57.163 29.630 0.00 0.00 0.00 3.58
1772 2073 8.824159 AGCAATCATAGTAGTTCATCACATAC 57.176 34.615 0.00 0.00 0.00 2.39
1773 2074 8.646004 AGCAATCATAGTAGTTCATCACATACT 58.354 33.333 0.00 0.00 33.27 2.12
1774 2075 9.914131 GCAATCATAGTAGTTCATCACATACTA 57.086 33.333 0.00 0.00 35.73 1.82
1778 2079 9.403583 TCATAGTAGTTCATCACATACTACACA 57.596 33.333 12.52 2.70 44.14 3.72
1779 2080 9.670719 CATAGTAGTTCATCACATACTACACAG 57.329 37.037 12.52 0.74 44.14 3.66
1780 2081 7.939784 AGTAGTTCATCACATACTACACAGA 57.060 36.000 12.52 0.00 44.14 3.41
1781 2082 8.349568 AGTAGTTCATCACATACTACACAGAA 57.650 34.615 12.52 0.00 44.14 3.02
1782 2083 8.244802 AGTAGTTCATCACATACTACACAGAAC 58.755 37.037 12.52 0.00 44.14 3.01
1783 2084 6.993079 AGTTCATCACATACTACACAGAACA 58.007 36.000 0.00 0.00 36.29 3.18
1784 2085 7.093354 AGTTCATCACATACTACACAGAACAG 58.907 38.462 0.00 0.00 36.29 3.16
1785 2086 6.834168 TCATCACATACTACACAGAACAGA 57.166 37.500 0.00 0.00 0.00 3.41
1786 2087 7.227049 TCATCACATACTACACAGAACAGAA 57.773 36.000 0.00 0.00 0.00 3.02
1787 2088 7.666623 TCATCACATACTACACAGAACAGAAA 58.333 34.615 0.00 0.00 0.00 2.52
1788 2089 7.598869 TCATCACATACTACACAGAACAGAAAC 59.401 37.037 0.00 0.00 0.00 2.78
1789 2090 6.220930 TCACATACTACACAGAACAGAAACC 58.779 40.000 0.00 0.00 0.00 3.27
1790 2091 5.118664 CACATACTACACAGAACAGAAACCG 59.881 44.000 0.00 0.00 0.00 4.44
1791 2092 3.814005 ACTACACAGAACAGAAACCGT 57.186 42.857 0.00 0.00 0.00 4.83
1792 2093 4.924305 ACTACACAGAACAGAAACCGTA 57.076 40.909 0.00 0.00 0.00 4.02
1793 2094 5.464030 ACTACACAGAACAGAAACCGTAT 57.536 39.130 0.00 0.00 0.00 3.06
1794 2095 6.579666 ACTACACAGAACAGAAACCGTATA 57.420 37.500 0.00 0.00 0.00 1.47
1795 2096 7.166691 ACTACACAGAACAGAAACCGTATAT 57.833 36.000 0.00 0.00 0.00 0.86
1796 2097 7.033791 ACTACACAGAACAGAAACCGTATATG 58.966 38.462 0.00 0.00 0.00 1.78
1797 2098 6.032956 ACACAGAACAGAAACCGTATATGA 57.967 37.500 0.00 0.00 0.00 2.15
1798 2099 6.460781 ACACAGAACAGAAACCGTATATGAA 58.539 36.000 0.00 0.00 0.00 2.57
1799 2100 6.932400 ACACAGAACAGAAACCGTATATGAAA 59.068 34.615 0.00 0.00 0.00 2.69
1800 2101 7.095355 ACACAGAACAGAAACCGTATATGAAAC 60.095 37.037 0.00 0.00 0.00 2.78
1801 2102 7.117812 CACAGAACAGAAACCGTATATGAAACT 59.882 37.037 0.00 0.00 0.00 2.66
1802 2103 8.308931 ACAGAACAGAAACCGTATATGAAACTA 58.691 33.333 0.00 0.00 0.00 2.24
1803 2104 8.592998 CAGAACAGAAACCGTATATGAAACTAC 58.407 37.037 0.00 0.00 0.00 2.73
1804 2105 8.308931 AGAACAGAAACCGTATATGAAACTACA 58.691 33.333 0.00 0.00 0.00 2.74
1805 2106 9.095065 GAACAGAAACCGTATATGAAACTACAT 57.905 33.333 0.00 0.00 0.00 2.29
1834 2135 2.989422 AAAAGTCGCGGGAGAAATTG 57.011 45.000 6.13 0.00 0.00 2.32
1835 2136 0.521735 AAAGTCGCGGGAGAAATTGC 59.478 50.000 6.13 0.00 0.00 3.56
1836 2137 0.605319 AAGTCGCGGGAGAAATTGCA 60.605 50.000 6.13 0.00 0.00 4.08
1837 2138 0.605319 AGTCGCGGGAGAAATTGCAA 60.605 50.000 6.13 0.00 0.00 4.08
1838 2139 0.454452 GTCGCGGGAGAAATTGCAAC 60.454 55.000 6.13 0.00 0.00 4.17
1839 2140 1.154035 CGCGGGAGAAATTGCAACC 60.154 57.895 0.00 0.00 0.00 3.77
2241 2542 2.654289 CATGGACGACGTGGTGGA 59.346 61.111 8.32 0.00 32.27 4.02
2242 2543 1.446099 CATGGACGACGTGGTGGAG 60.446 63.158 8.32 0.00 32.27 3.86
2243 2544 2.646175 ATGGACGACGTGGTGGAGG 61.646 63.158 8.32 0.00 0.00 4.30
2244 2545 2.987547 GGACGACGTGGTGGAGGA 60.988 66.667 8.32 0.00 0.00 3.71
2245 2546 2.567049 GACGACGTGGTGGAGGAG 59.433 66.667 8.32 0.00 0.00 3.69
2246 2547 3.628280 GACGACGTGGTGGAGGAGC 62.628 68.421 8.32 0.00 0.00 4.70
2247 2548 3.374402 CGACGTGGTGGAGGAGCT 61.374 66.667 0.00 0.00 0.00 4.09
2248 2549 2.574399 GACGTGGTGGAGGAGCTC 59.426 66.667 4.71 4.71 0.00 4.09
2249 2550 2.203640 ACGTGGTGGAGGAGCTCA 60.204 61.111 17.19 0.00 31.08 4.26
2250 2551 1.816863 GACGTGGTGGAGGAGCTCAA 61.817 60.000 17.19 0.00 31.08 3.02
2251 2552 1.194781 ACGTGGTGGAGGAGCTCAAT 61.195 55.000 17.19 2.72 31.08 2.57
2252 2553 0.460987 CGTGGTGGAGGAGCTCAATC 60.461 60.000 17.19 12.62 31.08 2.67
2253 2554 0.107459 GTGGTGGAGGAGCTCAATCC 60.107 60.000 23.77 23.77 39.89 3.01
2260 2561 2.510664 GGAGCTCAATCCTCCTCGT 58.489 57.895 17.19 0.00 44.40 4.18
2261 2562 0.387565 GGAGCTCAATCCTCCTCGTC 59.612 60.000 17.19 0.00 44.40 4.20
2262 2563 0.030101 GAGCTCAATCCTCCTCGTCG 59.970 60.000 9.40 0.00 0.00 5.12
2263 2564 1.066587 GCTCAATCCTCCTCGTCGG 59.933 63.158 0.00 0.00 0.00 4.79
2264 2565 1.384989 GCTCAATCCTCCTCGTCGGA 61.385 60.000 0.00 0.00 40.30 4.55
2279 2580 3.532155 GGAGCTGCCGAGGTCGAT 61.532 66.667 0.00 0.00 46.08 3.59
2280 2581 2.279120 GAGCTGCCGAGGTCGATG 60.279 66.667 0.00 0.00 43.02 3.84
2281 2582 3.069980 GAGCTGCCGAGGTCGATGT 62.070 63.158 0.00 0.00 43.02 3.06
2282 2583 1.725557 GAGCTGCCGAGGTCGATGTA 61.726 60.000 0.00 0.00 43.02 2.29
2283 2584 1.589196 GCTGCCGAGGTCGATGTAC 60.589 63.158 0.00 0.00 43.02 2.90
2284 2585 2.005960 GCTGCCGAGGTCGATGTACT 62.006 60.000 0.00 0.00 43.02 2.73
2285 2586 0.456221 CTGCCGAGGTCGATGTACTT 59.544 55.000 0.00 0.00 43.02 2.24
2286 2587 0.454600 TGCCGAGGTCGATGTACTTC 59.545 55.000 0.00 0.00 43.02 3.01
2287 2588 0.739561 GCCGAGGTCGATGTACTTCT 59.260 55.000 0.00 0.00 43.02 2.85
2288 2589 1.268640 GCCGAGGTCGATGTACTTCTC 60.269 57.143 0.00 1.04 43.02 2.87
2289 2590 1.334243 CCGAGGTCGATGTACTTCTCC 59.666 57.143 0.00 8.78 43.02 3.71
2290 2591 2.290464 CGAGGTCGATGTACTTCTCCT 58.710 52.381 16.43 16.43 43.02 3.69
2291 2592 2.683867 CGAGGTCGATGTACTTCTCCTT 59.316 50.000 17.08 2.87 43.02 3.36
2292 2593 3.242804 CGAGGTCGATGTACTTCTCCTTC 60.243 52.174 17.08 8.89 43.02 3.46
2293 2594 3.949113 GAGGTCGATGTACTTCTCCTTCT 59.051 47.826 17.08 5.71 0.00 2.85
2294 2595 3.697045 AGGTCGATGTACTTCTCCTTCTG 59.303 47.826 12.98 0.00 0.00 3.02
2295 2596 3.444388 GGTCGATGTACTTCTCCTTCTGT 59.556 47.826 7.13 0.00 0.00 3.41
2296 2597 4.082136 GGTCGATGTACTTCTCCTTCTGTT 60.082 45.833 7.13 0.00 0.00 3.16
2297 2598 5.096849 GTCGATGTACTTCTCCTTCTGTTC 58.903 45.833 7.13 0.00 0.00 3.18
2298 2599 4.158025 TCGATGTACTTCTCCTTCTGTTCC 59.842 45.833 7.13 0.00 0.00 3.62
2299 2600 4.158764 CGATGTACTTCTCCTTCTGTTCCT 59.841 45.833 7.13 0.00 0.00 3.36
2300 2601 5.656480 GATGTACTTCTCCTTCTGTTCCTC 58.344 45.833 1.60 0.00 0.00 3.71
2301 2602 3.506455 TGTACTTCTCCTTCTGTTCCTCG 59.494 47.826 0.00 0.00 0.00 4.63
2302 2603 1.273886 ACTTCTCCTTCTGTTCCTCGC 59.726 52.381 0.00 0.00 0.00 5.03
2303 2604 0.243907 TTCTCCTTCTGTTCCTCGCG 59.756 55.000 0.00 0.00 0.00 5.87
2304 2605 1.153745 CTCCTTCTGTTCCTCGCGG 60.154 63.158 6.13 0.00 0.00 6.46
2305 2606 1.595993 CTCCTTCTGTTCCTCGCGGA 61.596 60.000 6.13 0.00 37.60 5.54
2306 2607 0.970937 TCCTTCTGTTCCTCGCGGAT 60.971 55.000 6.13 0.00 39.58 4.18
2307 2608 0.807667 CCTTCTGTTCCTCGCGGATG 60.808 60.000 6.13 0.00 39.58 3.51
2308 2609 1.424493 CTTCTGTTCCTCGCGGATGC 61.424 60.000 6.13 0.00 39.58 3.91
2309 2610 2.125552 CTGTTCCTCGCGGATGCA 60.126 61.111 6.13 0.00 42.97 3.96
2310 2611 2.434185 TGTTCCTCGCGGATGCAC 60.434 61.111 6.13 0.00 42.97 4.57
2311 2612 3.195698 GTTCCTCGCGGATGCACC 61.196 66.667 6.13 0.00 42.97 5.01
2320 2621 2.494918 GGATGCACCGCTACTCGT 59.505 61.111 0.00 0.00 36.19 4.18
2321 2622 1.589196 GGATGCACCGCTACTCGTC 60.589 63.158 0.00 0.00 36.19 4.20
2322 2623 1.939785 GATGCACCGCTACTCGTCG 60.940 63.158 0.00 0.00 36.19 5.12
2323 2624 2.594119 GATGCACCGCTACTCGTCGT 62.594 60.000 0.00 0.00 36.19 4.34
2324 2625 2.576317 GCACCGCTACTCGTCGTC 60.576 66.667 0.00 0.00 36.19 4.20
2325 2626 2.099831 CACCGCTACTCGTCGTCC 59.900 66.667 0.00 0.00 36.19 4.79
2326 2627 2.046507 ACCGCTACTCGTCGTCCT 60.047 61.111 0.00 0.00 36.19 3.85
2327 2628 1.673665 ACCGCTACTCGTCGTCCTT 60.674 57.895 0.00 0.00 36.19 3.36
2328 2629 1.062206 CCGCTACTCGTCGTCCTTC 59.938 63.158 0.00 0.00 36.19 3.46
2329 2630 1.367599 CCGCTACTCGTCGTCCTTCT 61.368 60.000 0.00 0.00 36.19 2.85
2330 2631 0.026544 CGCTACTCGTCGTCCTTCTC 59.973 60.000 0.00 0.00 0.00 2.87
2331 2632 0.377905 GCTACTCGTCGTCCTTCTCC 59.622 60.000 0.00 0.00 0.00 3.71
2332 2633 2.013058 GCTACTCGTCGTCCTTCTCCT 61.013 57.143 0.00 0.00 0.00 3.69
2333 2634 2.358015 CTACTCGTCGTCCTTCTCCTT 58.642 52.381 0.00 0.00 0.00 3.36
2334 2635 0.882474 ACTCGTCGTCCTTCTCCTTG 59.118 55.000 0.00 0.00 0.00 3.61
2335 2636 0.171455 CTCGTCGTCCTTCTCCTTGG 59.829 60.000 0.00 0.00 0.00 3.61
2336 2637 1.446272 CGTCGTCCTTCTCCTTGGC 60.446 63.158 0.00 0.00 0.00 4.52
2337 2638 1.446272 GTCGTCCTTCTCCTTGGCG 60.446 63.158 0.00 0.00 0.00 5.69
2338 2639 2.125512 CGTCCTTCTCCTTGGCGG 60.126 66.667 0.00 0.00 0.00 6.13
2339 2640 2.436824 GTCCTTCTCCTTGGCGGC 60.437 66.667 0.00 0.00 0.00 6.53
2340 2641 2.927856 TCCTTCTCCTTGGCGGCA 60.928 61.111 7.97 7.97 0.00 5.69
2341 2642 2.034066 CCTTCTCCTTGGCGGCAA 59.966 61.111 24.02 24.02 0.00 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 6.149973 CACATTGATACATTGTGAGAACCAGT 59.850 38.462 16.54 0.00 43.83 4.00
124 126 4.142049 GGATAGATACCATCAGCTAGGCAC 60.142 50.000 0.00 0.00 0.00 5.01
126 128 4.099266 CAGGATAGATACCATCAGCTAGGC 59.901 50.000 0.00 0.00 0.00 3.93
168 170 4.346709 TCTCCTTGCGGATTGGATATTGTA 59.653 41.667 0.07 0.00 39.01 2.41
209 212 4.223032 CCTAGCACTTTCTTACTCTTGGGA 59.777 45.833 0.00 0.00 0.00 4.37
272 278 2.299582 TGAAGGGTTTCGAACGATACCA 59.700 45.455 27.46 12.34 44.46 3.25
291 297 3.421919 TCCAGTGCTTCATGTCAATGA 57.578 42.857 11.94 0.00 41.16 2.57
316 322 4.256920 ACAAGCAGTCATCACCTATCAAC 58.743 43.478 0.00 0.00 0.00 3.18
320 326 4.910195 TCAAACAAGCAGTCATCACCTAT 58.090 39.130 0.00 0.00 0.00 2.57
344 350 5.939447 TCCTCCACAATCATGTTATGCATA 58.061 37.500 1.16 1.16 37.82 3.14
359 365 2.265739 GCACGCTCATCCTCCACA 59.734 61.111 0.00 0.00 0.00 4.17
438 445 0.801872 CAAATGTCGCCGGTTCATGA 59.198 50.000 1.90 0.00 0.00 3.07
441 451 0.589223 GTTCAAATGTCGCCGGTTCA 59.411 50.000 1.90 0.00 0.00 3.18
501 511 3.304525 GGTCATCTTGAAGCTGCATATGC 60.305 47.826 21.09 21.09 42.50 3.14
552 562 2.952310 GCTTTCCTCCTCTCTCTCTCTC 59.048 54.545 0.00 0.00 0.00 3.20
554 564 2.689983 CAGCTTTCCTCCTCTCTCTCTC 59.310 54.545 0.00 0.00 0.00 3.20
555 565 2.624029 CCAGCTTTCCTCCTCTCTCTCT 60.624 54.545 0.00 0.00 0.00 3.10
556 566 1.756538 CCAGCTTTCCTCCTCTCTCTC 59.243 57.143 0.00 0.00 0.00 3.20
557 567 1.360852 TCCAGCTTTCCTCCTCTCTCT 59.639 52.381 0.00 0.00 0.00 3.10
559 569 2.187100 CTTCCAGCTTTCCTCCTCTCT 58.813 52.381 0.00 0.00 0.00 3.10
595 882 0.436150 CGTGCTTGTGTGTCTCATCG 59.564 55.000 0.00 0.00 0.00 3.84
607 894 1.275291 TCTAGAAGGGTTCCGTGCTTG 59.725 52.381 0.00 0.00 0.00 4.01
881 1176 6.041069 CCAGTTGGACCAAAGTATTTAAACCA 59.959 38.462 8.94 0.00 34.55 3.67
883 1178 7.013942 AGACCAGTTGGACCAAAGTATTTAAAC 59.986 37.037 8.94 0.00 35.81 2.01
1456 1752 1.093159 CTGGGCAGAAATCTCAGCAC 58.907 55.000 0.00 0.00 37.97 4.40
1464 1760 6.098266 ACTTGAAAGTAAAACTGGGCAGAAAT 59.902 34.615 0.00 0.00 37.52 2.17
1473 1769 8.742554 AGAACACAAACTTGAAAGTAAAACTG 57.257 30.769 0.00 0.00 38.57 3.16
1475 1771 7.536281 ACGAGAACACAAACTTGAAAGTAAAAC 59.464 33.333 0.00 0.00 38.57 2.43
1476 1772 7.586747 ACGAGAACACAAACTTGAAAGTAAAA 58.413 30.769 0.00 0.00 38.57 1.52
1546 1845 8.203937 TGTAATTTGAACCCGAATACATAGTG 57.796 34.615 0.00 0.00 0.00 2.74
1555 1856 5.618195 GCGAAATCTGTAATTTGAACCCGAA 60.618 40.000 0.00 0.00 0.00 4.30
1556 1857 4.142773 GCGAAATCTGTAATTTGAACCCGA 60.143 41.667 0.00 0.00 0.00 5.14
1561 1862 4.411993 TGCGCGAAATCTGTAATTTGAA 57.588 36.364 12.10 0.00 0.00 2.69
1565 1866 4.142708 TGTGATTGCGCGAAATCTGTAATT 60.143 37.500 33.74 3.00 37.44 1.40
1584 1885 5.393569 GCTAGAGATGCTCTAACAAGTGTGA 60.394 44.000 5.75 0.00 41.74 3.58
1587 1888 5.042593 CAGCTAGAGATGCTCTAACAAGTG 58.957 45.833 5.75 0.00 41.74 3.16
1588 1889 4.952957 TCAGCTAGAGATGCTCTAACAAGT 59.047 41.667 5.75 0.00 41.74 3.16
1589 1890 5.280945 GTCAGCTAGAGATGCTCTAACAAG 58.719 45.833 5.75 0.00 41.74 3.16
1590 1891 4.098654 GGTCAGCTAGAGATGCTCTAACAA 59.901 45.833 5.75 0.00 41.74 2.83
1592 1893 3.005367 GGGTCAGCTAGAGATGCTCTAAC 59.995 52.174 5.75 1.92 41.74 2.34
1593 1894 3.226777 GGGTCAGCTAGAGATGCTCTAA 58.773 50.000 5.75 0.00 41.74 2.10
1595 1896 1.703411 GGGTCAGCTAGAGATGCTCT 58.297 55.000 0.00 2.22 43.83 4.09
1596 1897 0.678950 GGGGTCAGCTAGAGATGCTC 59.321 60.000 0.00 0.00 38.92 4.26
1597 1898 1.112315 CGGGGTCAGCTAGAGATGCT 61.112 60.000 0.00 0.00 42.06 3.79
1598 1899 1.365633 CGGGGTCAGCTAGAGATGC 59.634 63.158 0.00 0.00 0.00 3.91
1599 1900 1.365633 GCGGGGTCAGCTAGAGATG 59.634 63.158 0.00 0.00 0.00 2.90
1600 1901 0.687757 TTGCGGGGTCAGCTAGAGAT 60.688 55.000 0.00 0.00 35.28 2.75
1601 1902 0.902984 TTTGCGGGGTCAGCTAGAGA 60.903 55.000 0.00 0.00 35.28 3.10
1602 1903 0.036388 TTTTGCGGGGTCAGCTAGAG 60.036 55.000 0.00 0.00 35.28 2.43
1603 1904 0.618458 ATTTTGCGGGGTCAGCTAGA 59.382 50.000 0.00 0.00 35.28 2.43
1604 1905 1.017387 GATTTTGCGGGGTCAGCTAG 58.983 55.000 0.00 0.00 35.28 3.42
1605 1906 0.393808 GGATTTTGCGGGGTCAGCTA 60.394 55.000 0.00 0.00 35.28 3.32
1606 1907 1.678970 GGATTTTGCGGGGTCAGCT 60.679 57.895 0.00 0.00 35.28 4.24
1607 1908 2.710902 GGGATTTTGCGGGGTCAGC 61.711 63.158 0.00 0.00 0.00 4.26
1608 1909 2.406616 CGGGATTTTGCGGGGTCAG 61.407 63.158 0.00 0.00 0.00 3.51
1609 1910 2.360600 CGGGATTTTGCGGGGTCA 60.361 61.111 0.00 0.00 0.00 4.02
1610 1911 2.045731 TCGGGATTTTGCGGGGTC 60.046 61.111 0.00 0.00 0.00 4.46
1611 1912 2.360726 GTCGGGATTTTGCGGGGT 60.361 61.111 0.00 0.00 0.00 4.95
1612 1913 3.138128 GGTCGGGATTTTGCGGGG 61.138 66.667 0.00 0.00 0.00 5.73
1613 1914 3.138128 GGGTCGGGATTTTGCGGG 61.138 66.667 0.00 0.00 0.00 6.13
1614 1915 3.505184 CGGGTCGGGATTTTGCGG 61.505 66.667 0.00 0.00 0.00 5.69
1615 1916 4.174129 GCGGGTCGGGATTTTGCG 62.174 66.667 0.00 0.00 0.00 4.85
1616 1917 1.098712 TATGCGGGTCGGGATTTTGC 61.099 55.000 0.00 0.00 0.00 3.68
1617 1918 1.333619 CTTATGCGGGTCGGGATTTTG 59.666 52.381 0.00 0.00 0.00 2.44
1618 1919 1.675552 CTTATGCGGGTCGGGATTTT 58.324 50.000 0.00 0.00 0.00 1.82
1619 1920 0.818040 GCTTATGCGGGTCGGGATTT 60.818 55.000 0.00 0.00 0.00 2.17
1620 1921 1.227853 GCTTATGCGGGTCGGGATT 60.228 57.895 0.00 0.00 0.00 3.01
1621 1922 2.426023 GCTTATGCGGGTCGGGAT 59.574 61.111 0.00 0.00 0.00 3.85
1622 1923 3.857038 GGCTTATGCGGGTCGGGA 61.857 66.667 0.00 0.00 40.82 5.14
1624 1925 4.524318 ACGGCTTATGCGGGTCGG 62.524 66.667 11.95 0.00 42.77 4.79
1625 1926 0.806884 TAAACGGCTTATGCGGGTCG 60.807 55.000 11.95 4.67 42.77 4.79
1626 1927 1.589803 ATAAACGGCTTATGCGGGTC 58.410 50.000 11.95 0.00 42.77 4.46
1627 1928 2.549349 CCTATAAACGGCTTATGCGGGT 60.549 50.000 11.95 3.23 42.77 5.28
1628 1929 2.073816 CCTATAAACGGCTTATGCGGG 58.926 52.381 11.95 1.75 42.77 6.13
1629 1930 2.735134 GACCTATAAACGGCTTATGCGG 59.265 50.000 6.62 6.62 43.85 5.69
1630 1931 2.407361 CGACCTATAAACGGCTTATGCG 59.593 50.000 3.09 0.00 40.82 4.73
1631 1932 3.427863 GTCGACCTATAAACGGCTTATGC 59.572 47.826 3.51 0.00 32.28 3.14
1632 1933 3.667261 CGTCGACCTATAAACGGCTTATG 59.333 47.826 10.58 0.00 32.28 1.90
1633 1934 3.565482 TCGTCGACCTATAAACGGCTTAT 59.435 43.478 10.58 0.00 35.89 1.73
1634 1935 2.942376 TCGTCGACCTATAAACGGCTTA 59.058 45.455 10.58 0.00 35.89 3.09
1635 1936 1.745087 TCGTCGACCTATAAACGGCTT 59.255 47.619 10.58 0.00 35.89 4.35
1636 1937 1.382522 TCGTCGACCTATAAACGGCT 58.617 50.000 10.58 0.00 35.89 5.52
1637 1938 2.114825 CTTCGTCGACCTATAAACGGC 58.885 52.381 10.58 0.00 35.89 5.68
1638 1939 3.680642 TCTTCGTCGACCTATAAACGG 57.319 47.619 10.58 0.00 35.89 4.44
1639 1940 5.093169 AGATCTTCGTCGACCTATAAACG 57.907 43.478 10.58 0.00 36.50 3.60
1640 1941 5.138788 CGAGATCTTCGTCGACCTATAAAC 58.861 45.833 10.58 0.00 44.27 2.01
1641 1942 5.340010 CGAGATCTTCGTCGACCTATAAA 57.660 43.478 10.58 0.00 44.27 1.40
1642 1943 4.986875 CGAGATCTTCGTCGACCTATAA 57.013 45.455 10.58 0.00 44.27 0.98
1654 1955 1.000145 GACCCGCAAACGAGATCTTC 59.000 55.000 0.00 0.00 43.93 2.87
1655 1956 0.736325 CGACCCGCAAACGAGATCTT 60.736 55.000 0.00 0.00 43.93 2.40
1656 1957 1.153823 CGACCCGCAAACGAGATCT 60.154 57.895 0.00 0.00 43.93 2.75
1657 1958 0.734942 TTCGACCCGCAAACGAGATC 60.735 55.000 0.00 0.00 43.93 2.75
1658 1959 0.320073 TTTCGACCCGCAAACGAGAT 60.320 50.000 0.00 0.00 43.93 2.75
1659 1960 0.530211 TTTTCGACCCGCAAACGAGA 60.530 50.000 0.00 0.00 43.93 4.04
1660 1961 0.383860 GTTTTCGACCCGCAAACGAG 60.384 55.000 0.00 0.00 43.93 4.18
1661 1962 1.642753 GTTTTCGACCCGCAAACGA 59.357 52.632 0.00 0.00 43.93 3.85
1662 1963 4.199130 GTTTTCGACCCGCAAACG 57.801 55.556 0.00 0.00 34.14 3.60
1674 1975 0.384353 GTTCTGCCGCAGACGTTTTC 60.384 55.000 22.82 5.97 40.46 2.29
1675 1976 1.092921 TGTTCTGCCGCAGACGTTTT 61.093 50.000 22.82 0.00 40.46 2.43
1676 1977 1.498865 CTGTTCTGCCGCAGACGTTT 61.499 55.000 22.82 0.00 40.46 3.60
1677 1978 1.956170 CTGTTCTGCCGCAGACGTT 60.956 57.895 22.82 0.00 40.46 3.99
1678 1979 2.356313 CTGTTCTGCCGCAGACGT 60.356 61.111 22.82 0.00 40.46 4.34
1679 1980 1.221466 TTTCTGTTCTGCCGCAGACG 61.221 55.000 22.82 13.70 40.46 4.18
1680 1981 0.235926 GTTTCTGTTCTGCCGCAGAC 59.764 55.000 22.82 17.03 40.46 3.51
1681 1982 0.884704 GGTTTCTGTTCTGCCGCAGA 60.885 55.000 19.36 19.36 38.87 4.26
1682 1983 1.576421 GGTTTCTGTTCTGCCGCAG 59.424 57.895 14.62 14.62 0.00 5.18
1683 1984 2.250939 CGGTTTCTGTTCTGCCGCA 61.251 57.895 0.00 0.00 35.90 5.69
1684 1985 0.947180 TACGGTTTCTGTTCTGCCGC 60.947 55.000 0.00 0.00 45.53 6.53
1685 1986 1.722011 ATACGGTTTCTGTTCTGCCG 58.278 50.000 0.00 0.00 46.83 5.69
1686 1987 4.439057 TCATATACGGTTTCTGTTCTGCC 58.561 43.478 0.00 0.00 0.00 4.85
1687 1988 6.092259 AGTTTCATATACGGTTTCTGTTCTGC 59.908 38.462 0.00 0.00 0.00 4.26
1688 1989 7.456253 CAGTTTCATATACGGTTTCTGTTCTG 58.544 38.462 0.00 0.00 0.00 3.02
1689 1990 6.092259 GCAGTTTCATATACGGTTTCTGTTCT 59.908 38.462 0.00 0.00 0.00 3.01
1690 1991 6.128391 TGCAGTTTCATATACGGTTTCTGTTC 60.128 38.462 0.00 0.00 0.00 3.18
1691 1992 5.703592 TGCAGTTTCATATACGGTTTCTGTT 59.296 36.000 0.00 0.00 0.00 3.16
1692 1993 5.242434 TGCAGTTTCATATACGGTTTCTGT 58.758 37.500 0.00 0.00 0.00 3.41
1693 1994 5.794687 TGCAGTTTCATATACGGTTTCTG 57.205 39.130 0.00 0.00 0.00 3.02
1694 1995 8.677148 ATTATGCAGTTTCATATACGGTTTCT 57.323 30.769 0.00 0.00 0.00 2.52
1695 1996 9.730420 AAATTATGCAGTTTCATATACGGTTTC 57.270 29.630 0.00 0.00 0.00 2.78
1696 1997 9.515020 CAAATTATGCAGTTTCATATACGGTTT 57.485 29.630 0.00 0.00 0.00 3.27
1697 1998 8.898761 TCAAATTATGCAGTTTCATATACGGTT 58.101 29.630 0.00 0.00 0.00 4.44
1698 1999 8.445275 TCAAATTATGCAGTTTCATATACGGT 57.555 30.769 0.00 0.00 0.00 4.83
1699 2000 9.385902 CTTCAAATTATGCAGTTTCATATACGG 57.614 33.333 0.00 0.00 0.00 4.02
1705 2006 9.545105 TTGTTTCTTCAAATTATGCAGTTTCAT 57.455 25.926 0.00 0.00 0.00 2.57
1706 2007 8.939201 TTGTTTCTTCAAATTATGCAGTTTCA 57.061 26.923 0.00 0.00 0.00 2.69
1710 2011 8.702438 CGATTTTGTTTCTTCAAATTATGCAGT 58.298 29.630 0.00 0.00 37.20 4.40
1711 2012 7.685304 GCGATTTTGTTTCTTCAAATTATGCAG 59.315 33.333 0.00 0.00 37.20 4.41
1712 2013 7.170489 TGCGATTTTGTTTCTTCAAATTATGCA 59.830 29.630 0.00 0.00 37.20 3.96
1713 2014 7.508965 TGCGATTTTGTTTCTTCAAATTATGC 58.491 30.769 0.00 0.00 37.20 3.14
1714 2015 8.164153 CCTGCGATTTTGTTTCTTCAAATTATG 58.836 33.333 0.00 0.00 37.20 1.90
1715 2016 8.087750 TCCTGCGATTTTGTTTCTTCAAATTAT 58.912 29.630 0.00 0.00 37.20 1.28
1716 2017 7.429633 TCCTGCGATTTTGTTTCTTCAAATTA 58.570 30.769 0.00 0.00 37.20 1.40
1717 2018 6.279882 TCCTGCGATTTTGTTTCTTCAAATT 58.720 32.000 0.00 0.00 37.20 1.82
1718 2019 5.841810 TCCTGCGATTTTGTTTCTTCAAAT 58.158 33.333 0.00 0.00 37.20 2.32
1719 2020 5.067153 TCTCCTGCGATTTTGTTTCTTCAAA 59.933 36.000 0.00 0.00 35.83 2.69
1720 2021 4.578516 TCTCCTGCGATTTTGTTTCTTCAA 59.421 37.500 0.00 0.00 0.00 2.69
1721 2022 4.133820 TCTCCTGCGATTTTGTTTCTTCA 58.866 39.130 0.00 0.00 0.00 3.02
1722 2023 4.749245 TCTCCTGCGATTTTGTTTCTTC 57.251 40.909 0.00 0.00 0.00 2.87
1723 2024 5.514274 TTTCTCCTGCGATTTTGTTTCTT 57.486 34.783 0.00 0.00 0.00 2.52
1724 2025 5.712152 ATTTCTCCTGCGATTTTGTTTCT 57.288 34.783 0.00 0.00 0.00 2.52
1725 2026 5.513141 GCTATTTCTCCTGCGATTTTGTTTC 59.487 40.000 0.00 0.00 0.00 2.78
1726 2027 5.048083 TGCTATTTCTCCTGCGATTTTGTTT 60.048 36.000 0.00 0.00 0.00 2.83
1727 2028 4.458989 TGCTATTTCTCCTGCGATTTTGTT 59.541 37.500 0.00 0.00 0.00 2.83
1728 2029 4.009675 TGCTATTTCTCCTGCGATTTTGT 58.990 39.130 0.00 0.00 0.00 2.83
1729 2030 4.621068 TGCTATTTCTCCTGCGATTTTG 57.379 40.909 0.00 0.00 0.00 2.44
1730 2031 5.357878 TGATTGCTATTTCTCCTGCGATTTT 59.642 36.000 0.00 0.00 30.53 1.82
1731 2032 4.883585 TGATTGCTATTTCTCCTGCGATTT 59.116 37.500 0.00 0.00 30.53 2.17
1732 2033 4.454678 TGATTGCTATTTCTCCTGCGATT 58.545 39.130 0.00 0.00 30.53 3.34
1733 2034 4.077300 TGATTGCTATTTCTCCTGCGAT 57.923 40.909 0.00 0.00 32.79 4.58
1734 2035 3.541996 TGATTGCTATTTCTCCTGCGA 57.458 42.857 0.00 0.00 0.00 5.10
1735 2036 4.993584 ACTATGATTGCTATTTCTCCTGCG 59.006 41.667 0.00 0.00 0.00 5.18
1736 2037 7.158021 ACTACTATGATTGCTATTTCTCCTGC 58.842 38.462 0.00 0.00 0.00 4.85
1737 2038 9.202273 GAACTACTATGATTGCTATTTCTCCTG 57.798 37.037 0.00 0.00 0.00 3.86
1738 2039 8.928448 TGAACTACTATGATTGCTATTTCTCCT 58.072 33.333 0.00 0.00 0.00 3.69
1739 2040 9.717942 ATGAACTACTATGATTGCTATTTCTCC 57.282 33.333 0.00 0.00 0.00 3.71
1743 2044 9.836864 TGTGATGAACTACTATGATTGCTATTT 57.163 29.630 0.00 0.00 0.00 1.40
1746 2047 9.914131 GTATGTGATGAACTACTATGATTGCTA 57.086 33.333 0.00 0.00 0.00 3.49
1747 2048 8.646004 AGTATGTGATGAACTACTATGATTGCT 58.354 33.333 0.00 0.00 0.00 3.91
1748 2049 8.824159 AGTATGTGATGAACTACTATGATTGC 57.176 34.615 0.00 0.00 0.00 3.56
1752 2053 9.403583 TGTGTAGTATGTGATGAACTACTATGA 57.596 33.333 11.78 0.00 43.81 2.15
1753 2054 9.670719 CTGTGTAGTATGTGATGAACTACTATG 57.329 37.037 11.78 1.03 43.81 2.23
1754 2055 9.628500 TCTGTGTAGTATGTGATGAACTACTAT 57.372 33.333 11.78 0.00 43.81 2.12
1755 2056 9.457436 TTCTGTGTAGTATGTGATGAACTACTA 57.543 33.333 11.78 0.00 43.81 1.82
1756 2057 7.939784 TCTGTGTAGTATGTGATGAACTACT 57.060 36.000 11.78 0.00 43.81 2.57
1757 2058 8.027189 TGTTCTGTGTAGTATGTGATGAACTAC 58.973 37.037 0.00 5.19 43.75 2.73
1758 2059 8.117813 TGTTCTGTGTAGTATGTGATGAACTA 57.882 34.615 0.00 0.00 34.31 2.24
1759 2060 6.993079 TGTTCTGTGTAGTATGTGATGAACT 58.007 36.000 0.00 0.00 34.31 3.01
1760 2061 7.090808 TCTGTTCTGTGTAGTATGTGATGAAC 58.909 38.462 0.00 0.00 33.94 3.18
1761 2062 7.227049 TCTGTTCTGTGTAGTATGTGATGAA 57.773 36.000 0.00 0.00 0.00 2.57
1762 2063 6.834168 TCTGTTCTGTGTAGTATGTGATGA 57.166 37.500 0.00 0.00 0.00 2.92
1763 2064 7.148573 GGTTTCTGTTCTGTGTAGTATGTGATG 60.149 40.741 0.00 0.00 0.00 3.07
1764 2065 6.874134 GGTTTCTGTTCTGTGTAGTATGTGAT 59.126 38.462 0.00 0.00 0.00 3.06
1765 2066 6.220930 GGTTTCTGTTCTGTGTAGTATGTGA 58.779 40.000 0.00 0.00 0.00 3.58
1766 2067 5.118664 CGGTTTCTGTTCTGTGTAGTATGTG 59.881 44.000 0.00 0.00 0.00 3.21
1767 2068 5.221382 ACGGTTTCTGTTCTGTGTAGTATGT 60.221 40.000 0.00 0.00 0.00 2.29
1768 2069 5.227908 ACGGTTTCTGTTCTGTGTAGTATG 58.772 41.667 0.00 0.00 0.00 2.39
1769 2070 5.464030 ACGGTTTCTGTTCTGTGTAGTAT 57.536 39.130 0.00 0.00 0.00 2.12
1770 2071 4.924305 ACGGTTTCTGTTCTGTGTAGTA 57.076 40.909 0.00 0.00 0.00 1.82
1771 2072 3.814005 ACGGTTTCTGTTCTGTGTAGT 57.186 42.857 0.00 0.00 0.00 2.73
1772 2073 7.255569 TCATATACGGTTTCTGTTCTGTGTAG 58.744 38.462 0.00 0.00 0.00 2.74
1773 2074 7.160547 TCATATACGGTTTCTGTTCTGTGTA 57.839 36.000 0.00 0.00 0.00 2.90
1774 2075 6.032956 TCATATACGGTTTCTGTTCTGTGT 57.967 37.500 0.00 0.00 0.00 3.72
1775 2076 6.961359 TTCATATACGGTTTCTGTTCTGTG 57.039 37.500 0.00 0.00 0.00 3.66
1776 2077 7.159372 AGTTTCATATACGGTTTCTGTTCTGT 58.841 34.615 0.00 0.00 0.00 3.41
1777 2078 7.596749 AGTTTCATATACGGTTTCTGTTCTG 57.403 36.000 0.00 0.00 0.00 3.02
1778 2079 8.308931 TGTAGTTTCATATACGGTTTCTGTTCT 58.691 33.333 0.00 0.00 0.00 3.01
1779 2080 8.470040 TGTAGTTTCATATACGGTTTCTGTTC 57.530 34.615 0.00 0.00 0.00 3.18
1814 2115 2.607038 GCAATTTCTCCCGCGACTTTTT 60.607 45.455 8.23 0.00 0.00 1.94
1815 2116 1.068541 GCAATTTCTCCCGCGACTTTT 60.069 47.619 8.23 0.00 0.00 2.27
1816 2117 0.521735 GCAATTTCTCCCGCGACTTT 59.478 50.000 8.23 0.00 0.00 2.66
1817 2118 0.605319 TGCAATTTCTCCCGCGACTT 60.605 50.000 8.23 0.00 0.00 3.01
1818 2119 0.605319 TTGCAATTTCTCCCGCGACT 60.605 50.000 8.23 0.00 0.00 4.18
1819 2120 0.454452 GTTGCAATTTCTCCCGCGAC 60.454 55.000 8.23 0.00 0.00 5.19
1820 2121 1.582610 GGTTGCAATTTCTCCCGCGA 61.583 55.000 8.23 0.00 0.00 5.87
1821 2122 1.154035 GGTTGCAATTTCTCCCGCG 60.154 57.895 0.59 0.00 0.00 6.46
1822 2123 4.889427 GGTTGCAATTTCTCCCGC 57.111 55.556 0.59 0.00 0.00 6.13
2221 2522 4.388499 ACCACGTCGTCCATGGCC 62.388 66.667 6.96 0.00 36.96 5.36
2222 2523 3.118454 CACCACGTCGTCCATGGC 61.118 66.667 6.96 0.96 36.96 4.40
2223 2524 2.434185 CCACCACGTCGTCCATGG 60.434 66.667 4.97 4.97 39.57 3.66
2224 2525 1.446099 CTCCACCACGTCGTCCATG 60.446 63.158 0.00 0.00 0.00 3.66
2225 2526 2.646175 CCTCCACCACGTCGTCCAT 61.646 63.158 0.00 0.00 0.00 3.41
2226 2527 3.299977 CCTCCACCACGTCGTCCA 61.300 66.667 0.00 0.00 0.00 4.02
2227 2528 2.987547 TCCTCCACCACGTCGTCC 60.988 66.667 0.00 0.00 0.00 4.79
2228 2529 2.567049 CTCCTCCACCACGTCGTC 59.433 66.667 0.00 0.00 0.00 4.20
2229 2530 3.681835 GCTCCTCCACCACGTCGT 61.682 66.667 0.00 0.00 0.00 4.34
2230 2531 3.343788 GAGCTCCTCCACCACGTCG 62.344 68.421 0.87 0.00 0.00 5.12
2231 2532 1.816863 TTGAGCTCCTCCACCACGTC 61.817 60.000 12.15 0.00 0.00 4.34
2232 2533 1.194781 ATTGAGCTCCTCCACCACGT 61.195 55.000 12.15 0.00 0.00 4.49
2233 2534 0.460987 GATTGAGCTCCTCCACCACG 60.461 60.000 12.15 0.00 0.00 4.94
2234 2535 0.107459 GGATTGAGCTCCTCCACCAC 60.107 60.000 21.67 2.95 32.18 4.16
2235 2536 0.252881 AGGATTGAGCTCCTCCACCA 60.253 55.000 25.98 0.46 42.12 4.17
2236 2537 2.614001 AGGATTGAGCTCCTCCACC 58.386 57.895 25.98 16.01 42.12 4.61
2242 2543 0.387565 GACGAGGAGGATTGAGCTCC 59.612 60.000 12.15 0.00 37.53 4.70
2243 2544 0.030101 CGACGAGGAGGATTGAGCTC 59.970 60.000 6.82 6.82 0.00 4.09
2244 2545 1.388065 CCGACGAGGAGGATTGAGCT 61.388 60.000 0.00 0.00 45.00 4.09
2245 2546 1.066587 CCGACGAGGAGGATTGAGC 59.933 63.158 0.00 0.00 45.00 4.26
2246 2547 2.795165 TCCGACGAGGAGGATTGAG 58.205 57.895 0.00 0.00 45.98 3.02
2262 2563 3.532155 ATCGACCTCGGCAGCTCC 61.532 66.667 0.00 0.00 40.29 4.70
2263 2564 1.725557 TACATCGACCTCGGCAGCTC 61.726 60.000 0.00 0.00 40.29 4.09
2264 2565 1.753078 TACATCGACCTCGGCAGCT 60.753 57.895 0.00 0.00 40.29 4.24
2265 2566 1.589196 GTACATCGACCTCGGCAGC 60.589 63.158 0.00 0.00 40.29 5.25
2266 2567 0.456221 AAGTACATCGACCTCGGCAG 59.544 55.000 0.00 0.00 40.29 4.85
2267 2568 0.454600 GAAGTACATCGACCTCGGCA 59.545 55.000 0.00 0.00 40.29 5.69
2268 2569 0.739561 AGAAGTACATCGACCTCGGC 59.260 55.000 0.00 0.00 40.29 5.54
2269 2570 1.334243 GGAGAAGTACATCGACCTCGG 59.666 57.143 0.00 0.00 40.29 4.63
2270 2571 2.290464 AGGAGAAGTACATCGACCTCG 58.710 52.381 11.90 0.00 41.45 4.63
2271 2572 3.949113 AGAAGGAGAAGTACATCGACCTC 59.051 47.826 15.97 11.38 32.71 3.85
2272 2573 3.697045 CAGAAGGAGAAGTACATCGACCT 59.303 47.826 11.90 11.90 34.32 3.85
2273 2574 3.444388 ACAGAAGGAGAAGTACATCGACC 59.556 47.826 8.55 8.55 0.00 4.79
2274 2575 4.705337 ACAGAAGGAGAAGTACATCGAC 57.295 45.455 0.00 0.00 0.00 4.20
2275 2576 4.158025 GGAACAGAAGGAGAAGTACATCGA 59.842 45.833 0.00 0.00 0.00 3.59
2276 2577 4.158764 AGGAACAGAAGGAGAAGTACATCG 59.841 45.833 0.00 0.00 0.00 3.84
2277 2578 5.656480 GAGGAACAGAAGGAGAAGTACATC 58.344 45.833 0.00 0.00 0.00 3.06
2278 2579 4.158764 CGAGGAACAGAAGGAGAAGTACAT 59.841 45.833 0.00 0.00 0.00 2.29
2279 2580 3.506455 CGAGGAACAGAAGGAGAAGTACA 59.494 47.826 0.00 0.00 0.00 2.90
2280 2581 3.673866 GCGAGGAACAGAAGGAGAAGTAC 60.674 52.174 0.00 0.00 0.00 2.73
2281 2582 2.492484 GCGAGGAACAGAAGGAGAAGTA 59.508 50.000 0.00 0.00 0.00 2.24
2282 2583 1.273886 GCGAGGAACAGAAGGAGAAGT 59.726 52.381 0.00 0.00 0.00 3.01
2283 2584 1.734047 CGCGAGGAACAGAAGGAGAAG 60.734 57.143 0.00 0.00 0.00 2.85
2284 2585 0.243907 CGCGAGGAACAGAAGGAGAA 59.756 55.000 0.00 0.00 0.00 2.87
2285 2586 1.883732 CGCGAGGAACAGAAGGAGA 59.116 57.895 0.00 0.00 0.00 3.71
2286 2587 4.485554 CGCGAGGAACAGAAGGAG 57.514 61.111 0.00 0.00 0.00 3.69
2303 2604 1.589196 GACGAGTAGCGGTGCATCC 60.589 63.158 5.29 0.00 46.49 3.51
2304 2605 1.939785 CGACGAGTAGCGGTGCATC 60.940 63.158 5.29 0.00 46.49 3.91
2305 2606 2.102357 CGACGAGTAGCGGTGCAT 59.898 61.111 5.29 0.00 46.49 3.96
2306 2607 3.318539 GACGACGAGTAGCGGTGCA 62.319 63.158 0.00 0.00 46.49 4.57
2307 2608 2.576317 GACGACGAGTAGCGGTGC 60.576 66.667 0.00 0.00 46.49 5.01
2308 2609 1.919956 AAGGACGACGAGTAGCGGTG 61.920 60.000 0.00 0.00 46.49 4.94
2309 2610 1.642952 GAAGGACGACGAGTAGCGGT 61.643 60.000 0.00 0.00 46.49 5.68
2310 2611 1.062206 GAAGGACGACGAGTAGCGG 59.938 63.158 0.00 0.00 46.49 5.52
2312 2613 0.377905 GGAGAAGGACGACGAGTAGC 59.622 60.000 0.00 0.00 0.00 3.58
2313 2614 2.027003 AGGAGAAGGACGACGAGTAG 57.973 55.000 0.00 0.00 0.00 2.57
2314 2615 2.082231 CAAGGAGAAGGACGACGAGTA 58.918 52.381 0.00 0.00 0.00 2.59
2315 2616 0.882474 CAAGGAGAAGGACGACGAGT 59.118 55.000 0.00 0.00 0.00 4.18
2316 2617 0.171455 CCAAGGAGAAGGACGACGAG 59.829 60.000 0.00 0.00 0.00 4.18
2317 2618 1.874345 GCCAAGGAGAAGGACGACGA 61.874 60.000 0.00 0.00 0.00 4.20
2318 2619 1.446272 GCCAAGGAGAAGGACGACG 60.446 63.158 0.00 0.00 0.00 5.12
2319 2620 1.446272 CGCCAAGGAGAAGGACGAC 60.446 63.158 0.00 0.00 0.00 4.34
2320 2621 2.646175 CCGCCAAGGAGAAGGACGA 61.646 63.158 0.00 0.00 45.00 4.20
2321 2622 2.125512 CCGCCAAGGAGAAGGACG 60.126 66.667 0.00 0.00 45.00 4.79
2322 2623 2.436824 GCCGCCAAGGAGAAGGAC 60.437 66.667 0.00 0.00 45.00 3.85
2323 2624 2.525124 TTGCCGCCAAGGAGAAGGA 61.525 57.895 0.00 0.00 45.00 3.36
2324 2625 2.034066 TTGCCGCCAAGGAGAAGG 59.966 61.111 0.00 0.00 45.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.