Multiple sequence alignment - TraesCS1B01G217600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G217600 chr1B 100.000 3861 0 0 1 3861 394851560 394855420 0.000000e+00 7131.0
1 TraesCS1B01G217600 chr1B 86.364 220 28 2 342 561 460580420 460580637 4.990000e-59 239.0
2 TraesCS1B01G217600 chr1D 93.202 2133 100 22 927 3037 293592614 293594723 0.000000e+00 3094.0
3 TraesCS1B01G217600 chr1D 85.522 594 41 12 3134 3702 293605044 293605617 2.590000e-161 579.0
4 TraesCS1B01G217600 chr1D 89.848 394 28 8 584 974 293592239 293592623 2.680000e-136 496.0
5 TraesCS1B01G217600 chr1D 94.175 206 8 2 1 202 356107133 356106928 1.040000e-80 311.0
6 TraesCS1B01G217600 chr1D 91.150 226 13 4 1 220 374174928 374174704 2.250000e-77 300.0
7 TraesCS1B01G217600 chr1D 88.018 217 22 3 349 561 343363523 343363739 1.780000e-63 254.0
8 TraesCS1B01G217600 chr1D 90.625 160 11 2 3705 3860 293605657 293605816 3.910000e-50 209.0
9 TraesCS1B01G217600 chr1D 85.714 56 6 2 2935 2989 358216950 358217004 1.500000e-04 58.4
10 TraesCS1B01G217600 chr1A 91.494 1493 75 21 1473 2939 365535614 365537080 0.000000e+00 2006.0
11 TraesCS1B01G217600 chr1A 89.382 744 46 16 3134 3861 365539489 365540215 0.000000e+00 905.0
12 TraesCS1B01G217600 chr1A 95.161 496 20 4 860 1353 365534491 365534984 0.000000e+00 780.0
13 TraesCS1B01G217600 chr1A 85.649 439 58 4 201 635 365533716 365534153 1.260000e-124 457.0
14 TraesCS1B01G217600 chr1A 86.636 217 25 1 349 561 443195430 443195646 1.790000e-58 237.0
15 TraesCS1B01G217600 chr1A 93.662 142 4 3 721 862 365534197 365534333 1.410000e-49 207.0
16 TraesCS1B01G217600 chr1A 90.722 97 3 1 3045 3135 365538975 365539071 1.460000e-24 124.0
17 TraesCS1B01G217600 chr1A 78.075 187 32 6 340 523 472549997 472550177 4.080000e-20 110.0
18 TraesCS1B01G217600 chr1A 94.118 68 3 1 1416 1483 365535004 365535070 6.820000e-18 102.0
19 TraesCS1B01G217600 chr6D 94.660 206 7 1 1 202 157347051 157347256 2.240000e-82 316.0
20 TraesCS1B01G217600 chr6D 93.810 210 9 1 1 206 14798097 14797888 2.900000e-81 313.0
21 TraesCS1B01G217600 chr6D 93.780 209 8 2 1 205 361370708 361370915 3.750000e-80 309.0
22 TraesCS1B01G217600 chr6D 94.872 39 2 0 2952 2990 31481056 31481094 1.160000e-05 62.1
23 TraesCS1B01G217600 chr3D 94.258 209 7 2 1 205 177034538 177034745 8.050000e-82 315.0
24 TraesCS1B01G217600 chr3D 93.333 210 10 1 1 206 217570714 217570923 1.350000e-79 307.0
25 TraesCS1B01G217600 chr2D 93.780 209 9 1 1 205 161404505 161404297 1.040000e-80 311.0
26 TraesCS1B01G217600 chr3A 93.269 208 10 1 1 204 218721068 218721275 1.740000e-78 303.0
27 TraesCS1B01G217600 chr3A 89.130 46 3 2 2934 2978 699423312 699423268 5.390000e-04 56.5
28 TraesCS1B01G217600 chr4D 84.434 212 30 3 352 561 467118250 467118040 5.060000e-49 206.0
29 TraesCS1B01G217600 chr5A 82.692 104 18 0 345 448 535525840 535525737 4.110000e-15 93.5
30 TraesCS1B01G217600 chr5A 95.238 42 2 0 2951 2992 8501543 8501502 2.490000e-07 67.6
31 TraesCS1B01G217600 chr6A 92.857 42 3 0 2952 2993 31744181 31744140 1.160000e-05 62.1
32 TraesCS1B01G217600 chr3B 91.111 45 4 0 2951 2995 28858556 28858512 1.160000e-05 62.1
33 TraesCS1B01G217600 chr3B 92.500 40 3 0 2951 2990 20452653 20452692 1.500000e-04 58.4
34 TraesCS1B01G217600 chr5B 92.500 40 3 0 2951 2990 339078230 339078269 1.500000e-04 58.4
35 TraesCS1B01G217600 chr7D 100.000 29 0 0 403 431 595325319 595325291 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G217600 chr1B 394851560 394855420 3860 False 7131.000000 7131 100.000000 1 3861 1 chr1B.!!$F1 3860
1 TraesCS1B01G217600 chr1D 293592239 293594723 2484 False 1795.000000 3094 91.525000 584 3037 2 chr1D.!!$F3 2453
2 TraesCS1B01G217600 chr1D 293605044 293605816 772 False 394.000000 579 88.073500 3134 3860 2 chr1D.!!$F4 726
3 TraesCS1B01G217600 chr1A 365533716 365540215 6499 False 654.428571 2006 91.455429 201 3861 7 chr1A.!!$F3 3660

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
466 468 0.388649 GCGTCGCAAGGAAGAAGAGA 60.389 55.0 13.44 0.0 38.47 3.10 F
2086 2884 0.170561 CGTACAAGTACAGCCTCGCT 59.829 55.0 10.63 0.0 40.77 4.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2271 3073 0.886043 TGCAAGCTTCAGATGCACGT 60.886 50.000 5.92 0.0 44.52 4.49 R
3556 6612 1.066858 CCAGTTAGATGCCACGTCACT 60.067 52.381 0.00 0.0 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 7.754851 GTTAGGAAACCTTAACCATCTTTGA 57.245 36.000 0.00 0.00 34.61 2.69
32 33 7.591165 GTTAGGAAACCTTAACCATCTTTGAC 58.409 38.462 0.00 0.00 34.61 3.18
33 34 4.760204 AGGAAACCTTAACCATCTTTGACG 59.240 41.667 0.00 0.00 0.00 4.35
34 35 4.758165 GGAAACCTTAACCATCTTTGACGA 59.242 41.667 0.00 0.00 0.00 4.20
35 36 5.106673 GGAAACCTTAACCATCTTTGACGAG 60.107 44.000 0.00 0.00 0.00 4.18
36 37 3.335579 ACCTTAACCATCTTTGACGAGC 58.664 45.455 0.00 0.00 0.00 5.03
37 38 3.008049 ACCTTAACCATCTTTGACGAGCT 59.992 43.478 0.00 0.00 0.00 4.09
38 39 4.222145 ACCTTAACCATCTTTGACGAGCTA 59.778 41.667 0.00 0.00 0.00 3.32
39 40 4.806247 CCTTAACCATCTTTGACGAGCTAG 59.194 45.833 0.00 0.00 0.00 3.42
40 41 3.963428 AACCATCTTTGACGAGCTAGT 57.037 42.857 0.00 0.00 0.00 2.57
41 42 3.512033 ACCATCTTTGACGAGCTAGTC 57.488 47.619 18.98 18.98 41.30 2.59
42 43 3.093057 ACCATCTTTGACGAGCTAGTCT 58.907 45.455 24.70 4.37 41.47 3.24
43 44 4.270834 ACCATCTTTGACGAGCTAGTCTA 58.729 43.478 24.70 16.43 41.47 2.59
44 45 4.336993 ACCATCTTTGACGAGCTAGTCTAG 59.663 45.833 24.70 20.54 41.47 2.43
45 46 4.336993 CCATCTTTGACGAGCTAGTCTAGT 59.663 45.833 24.70 11.48 41.47 2.57
46 47 5.163602 CCATCTTTGACGAGCTAGTCTAGTT 60.164 44.000 24.70 14.75 41.47 2.24
47 48 5.298197 TCTTTGACGAGCTAGTCTAGTTG 57.702 43.478 24.70 12.81 41.47 3.16
48 49 5.001874 TCTTTGACGAGCTAGTCTAGTTGA 58.998 41.667 24.70 14.48 41.47 3.18
49 50 4.948608 TTGACGAGCTAGTCTAGTTGAG 57.051 45.455 24.70 2.25 41.47 3.02
50 51 3.271729 TGACGAGCTAGTCTAGTTGAGG 58.728 50.000 24.70 0.00 41.47 3.86
51 52 2.018515 ACGAGCTAGTCTAGTTGAGGC 58.981 52.381 8.68 0.00 0.00 4.70
52 53 2.294074 CGAGCTAGTCTAGTTGAGGCT 58.706 52.381 8.68 0.00 44.48 4.58
53 54 2.685897 CGAGCTAGTCTAGTTGAGGCTT 59.314 50.000 8.68 0.00 36.38 4.35
54 55 3.878103 CGAGCTAGTCTAGTTGAGGCTTA 59.122 47.826 8.68 0.00 36.38 3.09
55 56 4.260866 CGAGCTAGTCTAGTTGAGGCTTAC 60.261 50.000 8.68 0.00 36.38 2.34
56 57 4.862371 AGCTAGTCTAGTTGAGGCTTACT 58.138 43.478 8.68 8.09 36.38 2.24
57 58 6.003859 AGCTAGTCTAGTTGAGGCTTACTA 57.996 41.667 8.68 9.27 36.38 1.82
58 59 6.059484 AGCTAGTCTAGTTGAGGCTTACTAG 58.941 44.000 22.13 22.13 36.38 2.57
59 60 5.239963 GCTAGTCTAGTTGAGGCTTACTAGG 59.760 48.000 25.10 16.01 36.38 3.02
60 61 4.538738 AGTCTAGTTGAGGCTTACTAGGG 58.461 47.826 25.10 11.51 36.38 3.53
61 62 4.230041 AGTCTAGTTGAGGCTTACTAGGGA 59.770 45.833 25.10 12.99 36.38 4.20
62 63 4.338964 GTCTAGTTGAGGCTTACTAGGGAC 59.661 50.000 25.10 18.00 42.54 4.46
63 64 3.185880 AGTTGAGGCTTACTAGGGACA 57.814 47.619 1.84 0.00 0.00 4.02
64 65 3.725634 AGTTGAGGCTTACTAGGGACAT 58.274 45.455 1.84 0.00 0.00 3.06
65 66 4.880164 AGTTGAGGCTTACTAGGGACATA 58.120 43.478 1.84 0.00 0.00 2.29
66 67 4.896482 AGTTGAGGCTTACTAGGGACATAG 59.104 45.833 1.84 0.00 0.00 2.23
67 68 4.537945 TGAGGCTTACTAGGGACATAGT 57.462 45.455 2.09 2.09 39.35 2.12
68 69 5.658198 TGAGGCTTACTAGGGACATAGTA 57.342 43.478 0.17 0.17 37.24 1.82
69 70 6.215515 TGAGGCTTACTAGGGACATAGTAT 57.784 41.667 4.90 0.00 37.91 2.12
70 71 6.621394 TGAGGCTTACTAGGGACATAGTATT 58.379 40.000 4.90 0.00 37.91 1.89
71 72 7.073854 TGAGGCTTACTAGGGACATAGTATTT 58.926 38.462 4.90 0.00 37.91 1.40
72 73 8.229605 TGAGGCTTACTAGGGACATAGTATTTA 58.770 37.037 4.90 0.00 37.91 1.40
73 74 9.257428 GAGGCTTACTAGGGACATAGTATTTAT 57.743 37.037 4.90 0.00 37.91 1.40
74 75 9.617053 AGGCTTACTAGGGACATAGTATTTATT 57.383 33.333 4.90 0.00 37.91 1.40
99 100 9.900710 TTTTTGTATTCACGCATGTATTTAAGT 57.099 25.926 0.00 0.00 0.00 2.24
100 101 9.900710 TTTTGTATTCACGCATGTATTTAAGTT 57.099 25.926 0.00 0.00 0.00 2.66
101 102 9.900710 TTTGTATTCACGCATGTATTTAAGTTT 57.099 25.926 0.00 0.00 0.00 2.66
102 103 9.549509 TTGTATTCACGCATGTATTTAAGTTTC 57.450 29.630 0.00 0.00 0.00 2.78
103 104 8.178964 TGTATTCACGCATGTATTTAAGTTTCC 58.821 33.333 0.00 0.00 0.00 3.13
104 105 5.211266 TCACGCATGTATTTAAGTTTCCG 57.789 39.130 0.00 0.00 0.00 4.30
105 106 4.930405 TCACGCATGTATTTAAGTTTCCGA 59.070 37.500 0.00 0.00 0.00 4.55
106 107 5.583061 TCACGCATGTATTTAAGTTTCCGAT 59.417 36.000 0.00 0.00 0.00 4.18
107 108 5.901884 CACGCATGTATTTAAGTTTCCGATC 59.098 40.000 0.00 0.00 0.00 3.69
108 109 5.583061 ACGCATGTATTTAAGTTTCCGATCA 59.417 36.000 0.00 0.00 0.00 2.92
109 110 6.092944 ACGCATGTATTTAAGTTTCCGATCAA 59.907 34.615 0.00 0.00 0.00 2.57
110 111 7.132213 CGCATGTATTTAAGTTTCCGATCAAT 58.868 34.615 0.00 0.00 0.00 2.57
111 112 8.279800 CGCATGTATTTAAGTTTCCGATCAATA 58.720 33.333 0.00 0.00 0.00 1.90
112 113 9.382244 GCATGTATTTAAGTTTCCGATCAATAC 57.618 33.333 0.00 0.00 0.00 1.89
121 122 7.484035 AGTTTCCGATCAATACAATTCTAGC 57.516 36.000 0.00 0.00 0.00 3.42
122 123 7.047891 AGTTTCCGATCAATACAATTCTAGCA 58.952 34.615 0.00 0.00 0.00 3.49
123 124 7.716998 AGTTTCCGATCAATACAATTCTAGCAT 59.283 33.333 0.00 0.00 0.00 3.79
124 125 7.425577 TTCCGATCAATACAATTCTAGCATG 57.574 36.000 0.00 0.00 0.00 4.06
125 126 6.758254 TCCGATCAATACAATTCTAGCATGA 58.242 36.000 0.00 0.00 0.00 3.07
126 127 7.216494 TCCGATCAATACAATTCTAGCATGAA 58.784 34.615 0.00 0.00 0.00 2.57
127 128 7.879677 TCCGATCAATACAATTCTAGCATGAAT 59.120 33.333 0.00 0.00 38.19 2.57
128 129 9.154847 CCGATCAATACAATTCTAGCATGAATA 57.845 33.333 0.00 0.00 35.82 1.75
145 146 9.918630 AGCATGAATAATAAACCTTTATCATGC 57.081 29.630 22.50 22.50 42.18 4.06
146 147 9.695526 GCATGAATAATAAACCTTTATCATGCA 57.304 29.630 23.74 9.97 41.93 3.96
187 188 7.881775 AACAACTTTATTATTGCCTCTAGGG 57.118 36.000 0.00 0.00 35.18 3.53
218 219 1.409790 TCAGAAACCACGTCGGAGAAA 59.590 47.619 10.46 0.00 39.69 2.52
220 221 2.610374 CAGAAACCACGTCGGAGAAAAA 59.390 45.455 10.46 0.00 39.69 1.94
270 271 5.721960 GCCATTCCCCACTATCTATCTTAGA 59.278 44.000 0.00 0.00 39.50 2.10
278 279 5.949354 CCACTATCTATCTTAGAGTGGGAGG 59.051 48.000 10.84 0.00 42.74 4.30
281 282 3.140143 TCTATCTTAGAGTGGGAGGGGT 58.860 50.000 0.00 0.00 0.00 4.95
283 284 0.617820 TCTTAGAGTGGGAGGGGTGC 60.618 60.000 0.00 0.00 0.00 5.01
284 285 0.909610 CTTAGAGTGGGAGGGGTGCA 60.910 60.000 0.00 0.00 0.00 4.57
285 286 1.198759 TTAGAGTGGGAGGGGTGCAC 61.199 60.000 8.80 8.80 0.00 4.57
292 293 3.315949 GAGGGGTGCACGGGTGTA 61.316 66.667 11.45 0.00 0.00 2.90
293 294 3.310860 GAGGGGTGCACGGGTGTAG 62.311 68.421 11.45 0.00 0.00 2.74
313 315 4.681978 GGTCGCCCGAGTTGTGCT 62.682 66.667 0.00 0.00 0.00 4.40
320 322 4.988598 CGAGTTGTGCTGCGGGGT 62.989 66.667 0.00 0.00 0.00 4.95
333 335 2.681591 GGGGTTTAGAGGGGTGGC 59.318 66.667 0.00 0.00 0.00 5.01
334 336 2.681591 GGGTTTAGAGGGGTGGCC 59.318 66.667 0.00 0.00 0.00 5.36
335 337 2.271173 GGTTTAGAGGGGTGGCCG 59.729 66.667 0.00 0.00 0.00 6.13
387 389 4.008933 GGTGGAGAGGCTGTGCGT 62.009 66.667 0.00 0.00 0.00 5.24
389 391 4.007644 TGGAGAGGCTGTGCGTGG 62.008 66.667 0.00 0.00 0.00 4.94
390 392 3.695606 GGAGAGGCTGTGCGTGGA 61.696 66.667 0.00 0.00 0.00 4.02
466 468 0.388649 GCGTCGCAAGGAAGAAGAGA 60.389 55.000 13.44 0.00 38.47 3.10
468 470 1.734047 CGTCGCAAGGAAGAAGAGAGG 60.734 57.143 0.00 0.00 38.47 3.69
484 486 4.542697 AGAGAGGGAGGTAGAAGATGAAC 58.457 47.826 0.00 0.00 0.00 3.18
491 493 4.429108 GAGGTAGAAGATGAACAGTGCTC 58.571 47.826 0.00 0.00 0.00 4.26
503 505 2.061773 ACAGTGCTCGATCTGTTTTCG 58.938 47.619 10.74 0.00 41.33 3.46
504 506 1.391485 CAGTGCTCGATCTGTTTTCGG 59.609 52.381 0.00 0.00 37.22 4.30
520 522 2.579207 TCGGTCGTTGGATGAAGATC 57.421 50.000 0.00 0.00 0.00 2.75
523 525 3.697542 TCGGTCGTTGGATGAAGATCTAA 59.302 43.478 0.00 0.00 0.00 2.10
524 526 4.158949 TCGGTCGTTGGATGAAGATCTAAA 59.841 41.667 0.00 0.00 31.44 1.85
525 527 4.504461 CGGTCGTTGGATGAAGATCTAAAG 59.496 45.833 0.00 0.00 31.44 1.85
543 545 7.272037 TCTAAAGGTTCTGGTTCAAAATGAC 57.728 36.000 0.00 0.00 0.00 3.06
544 546 7.060421 TCTAAAGGTTCTGGTTCAAAATGACT 58.940 34.615 0.00 0.00 0.00 3.41
636 642 6.795399 TCTTGTTTTCCAGTGTCATTTCTTC 58.205 36.000 0.00 0.00 0.00 2.87
648 654 2.303022 TCATTTCTTCCACGGCTTCTCT 59.697 45.455 0.00 0.00 0.00 3.10
707 713 9.249457 CTTATTTTCAACAAAAGAAACCTCTCC 57.751 33.333 0.00 0.00 33.40 3.71
709 715 5.576447 TTCAACAAAAGAAACCTCTCCAC 57.424 39.130 0.00 0.00 0.00 4.02
710 716 4.594970 TCAACAAAAGAAACCTCTCCACA 58.405 39.130 0.00 0.00 0.00 4.17
750 757 2.484417 CCTCTCCACACATATCACTGCC 60.484 54.545 0.00 0.00 0.00 4.85
757 764 3.373130 CACACATATCACTGCCAAGTCAG 59.627 47.826 0.00 0.00 39.86 3.51
759 766 3.620374 CACATATCACTGCCAAGTCAGTC 59.380 47.826 0.00 0.00 44.81 3.51
760 767 3.261643 ACATATCACTGCCAAGTCAGTCA 59.738 43.478 0.00 0.00 44.81 3.41
892 1060 1.740296 GCTTCCGCGCTGAAGGTAA 60.740 57.895 33.34 11.86 41.65 2.85
931 1101 1.598962 GCCAGCTCAGACAAGTGCA 60.599 57.895 0.00 0.00 0.00 4.57
1074 1281 2.583593 GTGATCTCCGTGGCGCTC 60.584 66.667 7.64 0.00 0.00 5.03
1409 1616 1.000163 GAGTCAACTGCTCGAACCTCA 60.000 52.381 0.00 0.00 0.00 3.86
1411 1618 1.040646 TCAACTGCTCGAACCTCACT 58.959 50.000 0.00 0.00 0.00 3.41
1412 1619 1.412710 TCAACTGCTCGAACCTCACTT 59.587 47.619 0.00 0.00 0.00 3.16
1413 1620 1.528586 CAACTGCTCGAACCTCACTTG 59.471 52.381 0.00 0.00 0.00 3.16
1414 1621 0.753262 ACTGCTCGAACCTCACTTGT 59.247 50.000 0.00 0.00 0.00 3.16
1438 1648 4.411327 TGCTTGTCGACTTTGTTTCTTTG 58.589 39.130 17.92 0.00 0.00 2.77
1523 2286 5.914033 TGAGGTGGTTATAGCATGAACTAC 58.086 41.667 0.00 0.00 36.58 2.73
1578 2344 5.751990 TCAGAACCGTTTCTCACTTAAGTTC 59.248 40.000 5.07 0.00 40.34 3.01
1613 2379 6.881602 AGAAGACAAAGGTAGATCAATTGACC 59.118 38.462 11.07 8.13 0.00 4.02
1621 2387 3.726557 AGATCAATTGACCTTGGCAGA 57.273 42.857 11.07 0.00 0.00 4.26
1627 2397 3.733443 ATTGACCTTGGCAGACAAAAC 57.267 42.857 0.00 0.00 38.91 2.43
1629 2399 1.748493 TGACCTTGGCAGACAAAACAC 59.252 47.619 0.00 0.00 38.91 3.32
1636 2406 1.111277 GCAGACAAAACACCCTTGGT 58.889 50.000 0.00 0.00 35.62 3.67
1641 2411 5.683770 GCAGACAAAACACCCTTGGTAAAAT 60.684 40.000 0.00 0.00 32.11 1.82
1656 2426 4.570772 TGGTAAAATCTCGCTATGTTGAGC 59.429 41.667 0.00 0.00 39.20 4.26
1662 2432 4.495911 TCTCGCTATGTTGAGCTGATAG 57.504 45.455 0.00 0.00 40.51 2.08
1693 2488 6.335777 GCAAAATCTTGGCATAGAGAACATT 58.664 36.000 0.00 0.00 32.76 2.71
1719 2514 9.408648 TGTTATCATCTACAGAGTACAGAATGA 57.591 33.333 0.00 0.00 39.69 2.57
1794 2589 1.270571 TGCATCGTGGTACAGCTCAAA 60.271 47.619 0.00 0.00 41.80 2.69
1810 2605 3.854784 GCTCAAAGCTCACATGACAAACC 60.855 47.826 0.00 0.00 38.45 3.27
1959 2757 1.616159 GGTTTGCTGAAGGTTAGGCA 58.384 50.000 0.00 0.00 0.00 4.75
2086 2884 0.170561 CGTACAAGTACAGCCTCGCT 59.829 55.000 10.63 0.00 40.77 4.93
2154 2952 3.691342 CTTCGACCCCTCCACGCA 61.691 66.667 0.00 0.00 0.00 5.24
2255 3053 2.233676 TGTGAGACGGTCATGTAAGCAT 59.766 45.455 11.27 0.00 37.56 3.79
2271 3073 4.023234 ATGCACCCGCCCGTTGTA 62.023 61.111 0.00 0.00 37.32 2.41
2275 3077 4.668118 ACCCGCCCGTTGTACGTG 62.668 66.667 0.00 0.00 40.58 4.49
2279 3081 2.782615 GCCCGTTGTACGTGCATC 59.217 61.111 7.30 5.86 44.21 3.91
2289 3091 1.078709 TACGTGCATCTGAAGCTTGC 58.921 50.000 2.10 0.96 36.91 4.01
2350 3152 0.468400 GGAGGAGGTGCTCGAGGTAT 60.468 60.000 15.58 0.00 0.00 2.73
2485 3290 0.670706 TACGCACAATTTTGCAGCCA 59.329 45.000 16.33 0.00 43.15 4.75
2486 3291 0.179089 ACGCACAATTTTGCAGCCAA 60.179 45.000 16.33 0.00 43.15 4.52
2627 3436 1.971167 TTGATGTGGTCGCCCTTGC 60.971 57.895 0.00 0.00 0.00 4.01
3006 3876 4.419200 AGAGTAGATGATACCCCACACCTA 59.581 45.833 0.00 0.00 0.00 3.08
3155 6186 8.303876 ACTTATGTGGGTTGAATATGTGTTTTC 58.696 33.333 0.00 0.00 0.00 2.29
3180 6211 6.875195 CCTTGTACTTTTTAATCGGTCTGGTA 59.125 38.462 0.00 0.00 0.00 3.25
3181 6212 7.388500 CCTTGTACTTTTTAATCGGTCTGGTAA 59.612 37.037 0.00 0.00 0.00 2.85
3298 6342 7.947332 ACAAAAAGGGGCCAAATATGTATTTTT 59.053 29.630 4.39 1.52 33.88 1.94
3401 6455 4.278975 AGTTGTTTTGGGCACTTTCAAA 57.721 36.364 0.00 0.00 0.00 2.69
3505 6561 3.777106 TCCTAGAATGACCATCATGGC 57.223 47.619 2.52 0.00 42.67 4.40
3523 6579 9.970395 CATCATGGCAGTGTTAATTTTACATAT 57.030 29.630 0.00 0.00 0.00 1.78
3629 6685 5.110814 TCAAAAACTGGTTTGAGGAGAGA 57.889 39.130 0.00 0.00 41.45 3.10
3718 6811 5.355071 TGTTGATTCATAGATGCTTGTGACC 59.645 40.000 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 7.572539 CGTCAAAGATGGTTAAGGTTTCCTAAC 60.573 40.741 0.00 0.00 31.13 2.34
8 9 6.428771 CGTCAAAGATGGTTAAGGTTTCCTAA 59.571 38.462 0.00 0.00 31.13 2.69
9 10 5.935789 CGTCAAAGATGGTTAAGGTTTCCTA 59.064 40.000 0.00 0.00 31.13 2.94
10 11 4.760204 CGTCAAAGATGGTTAAGGTTTCCT 59.240 41.667 0.00 0.00 33.87 3.36
11 12 4.758165 TCGTCAAAGATGGTTAAGGTTTCC 59.242 41.667 0.00 0.00 0.00 3.13
12 13 5.617087 GCTCGTCAAAGATGGTTAAGGTTTC 60.617 44.000 0.00 0.00 0.00 2.78
13 14 4.215613 GCTCGTCAAAGATGGTTAAGGTTT 59.784 41.667 0.00 0.00 0.00 3.27
14 15 3.751698 GCTCGTCAAAGATGGTTAAGGTT 59.248 43.478 0.00 0.00 0.00 3.50
15 16 3.008049 AGCTCGTCAAAGATGGTTAAGGT 59.992 43.478 0.00 0.00 0.00 3.50
16 17 3.600388 AGCTCGTCAAAGATGGTTAAGG 58.400 45.455 0.00 0.00 0.00 2.69
17 18 5.411781 ACTAGCTCGTCAAAGATGGTTAAG 58.588 41.667 0.00 0.00 0.00 1.85
18 19 5.185249 AGACTAGCTCGTCAAAGATGGTTAA 59.815 40.000 19.46 0.00 36.38 2.01
19 20 4.705507 AGACTAGCTCGTCAAAGATGGTTA 59.294 41.667 19.46 0.00 36.38 2.85
20 21 3.511934 AGACTAGCTCGTCAAAGATGGTT 59.488 43.478 19.46 0.00 36.38 3.67
21 22 3.093057 AGACTAGCTCGTCAAAGATGGT 58.907 45.455 19.46 0.00 36.38 3.55
22 23 3.791973 AGACTAGCTCGTCAAAGATGG 57.208 47.619 19.46 0.00 36.38 3.51
23 24 5.493133 ACTAGACTAGCTCGTCAAAGATG 57.507 43.478 19.46 6.10 36.38 2.90
24 25 5.648526 TCAACTAGACTAGCTCGTCAAAGAT 59.351 40.000 19.46 8.88 36.38 2.40
25 26 5.001874 TCAACTAGACTAGCTCGTCAAAGA 58.998 41.667 19.46 7.75 36.38 2.52
26 27 5.298197 TCAACTAGACTAGCTCGTCAAAG 57.702 43.478 19.46 17.00 36.38 2.77
27 28 4.156190 CCTCAACTAGACTAGCTCGTCAAA 59.844 45.833 19.46 7.13 36.38 2.69
28 29 3.690139 CCTCAACTAGACTAGCTCGTCAA 59.310 47.826 19.46 0.00 36.38 3.18
29 30 3.271729 CCTCAACTAGACTAGCTCGTCA 58.728 50.000 19.46 5.89 36.38 4.35
30 31 2.032426 GCCTCAACTAGACTAGCTCGTC 59.968 54.545 10.30 10.30 0.00 4.20
31 32 2.018515 GCCTCAACTAGACTAGCTCGT 58.981 52.381 9.52 0.00 0.00 4.18
32 33 2.294074 AGCCTCAACTAGACTAGCTCG 58.706 52.381 9.52 0.00 0.00 5.03
33 34 4.885325 AGTAAGCCTCAACTAGACTAGCTC 59.115 45.833 9.52 0.00 0.00 4.09
34 35 4.862371 AGTAAGCCTCAACTAGACTAGCT 58.138 43.478 9.52 0.00 0.00 3.32
35 36 5.239963 CCTAGTAAGCCTCAACTAGACTAGC 59.760 48.000 9.52 0.00 45.29 3.42
36 37 5.766174 CCCTAGTAAGCCTCAACTAGACTAG 59.234 48.000 13.20 8.00 45.29 2.57
37 38 5.431073 TCCCTAGTAAGCCTCAACTAGACTA 59.569 44.000 13.20 0.00 45.29 2.59
38 39 4.230041 TCCCTAGTAAGCCTCAACTAGACT 59.770 45.833 13.20 0.00 45.29 3.24
39 40 4.338964 GTCCCTAGTAAGCCTCAACTAGAC 59.661 50.000 13.20 4.31 45.29 2.59
40 41 4.017775 TGTCCCTAGTAAGCCTCAACTAGA 60.018 45.833 13.20 0.00 45.29 2.43
41 42 4.279145 TGTCCCTAGTAAGCCTCAACTAG 58.721 47.826 7.06 7.06 43.15 2.57
42 43 4.326600 TGTCCCTAGTAAGCCTCAACTA 57.673 45.455 0.00 0.00 0.00 2.24
43 44 3.185880 TGTCCCTAGTAAGCCTCAACT 57.814 47.619 0.00 0.00 0.00 3.16
44 45 4.650131 ACTATGTCCCTAGTAAGCCTCAAC 59.350 45.833 0.00 0.00 30.16 3.18
45 46 4.880164 ACTATGTCCCTAGTAAGCCTCAA 58.120 43.478 0.00 0.00 30.16 3.02
46 47 4.537945 ACTATGTCCCTAGTAAGCCTCA 57.462 45.455 0.00 0.00 30.16 3.86
47 48 7.541916 AAATACTATGTCCCTAGTAAGCCTC 57.458 40.000 0.00 0.00 37.65 4.70
48 49 9.617053 AATAAATACTATGTCCCTAGTAAGCCT 57.383 33.333 0.00 0.00 37.65 4.58
73 74 9.900710 ACTTAAATACATGCGTGAATACAAAAA 57.099 25.926 14.17 0.00 0.00 1.94
74 75 9.900710 AACTTAAATACATGCGTGAATACAAAA 57.099 25.926 14.17 0.00 0.00 2.44
75 76 9.900710 AAACTTAAATACATGCGTGAATACAAA 57.099 25.926 14.17 0.00 0.00 2.83
76 77 9.549509 GAAACTTAAATACATGCGTGAATACAA 57.450 29.630 14.17 0.26 0.00 2.41
77 78 8.178964 GGAAACTTAAATACATGCGTGAATACA 58.821 33.333 14.17 0.00 0.00 2.29
78 79 7.372396 CGGAAACTTAAATACATGCGTGAATAC 59.628 37.037 14.17 0.00 0.00 1.89
79 80 7.278203 TCGGAAACTTAAATACATGCGTGAATA 59.722 33.333 14.17 0.00 0.00 1.75
80 81 6.092944 TCGGAAACTTAAATACATGCGTGAAT 59.907 34.615 14.17 0.00 0.00 2.57
81 82 5.408909 TCGGAAACTTAAATACATGCGTGAA 59.591 36.000 14.17 0.00 0.00 3.18
82 83 4.930405 TCGGAAACTTAAATACATGCGTGA 59.070 37.500 14.17 0.00 0.00 4.35
83 84 5.211266 TCGGAAACTTAAATACATGCGTG 57.789 39.130 3.82 3.82 0.00 5.34
84 85 5.583061 TGATCGGAAACTTAAATACATGCGT 59.417 36.000 0.00 0.00 0.00 5.24
85 86 6.043327 TGATCGGAAACTTAAATACATGCG 57.957 37.500 0.00 0.00 0.00 4.73
86 87 9.382244 GTATTGATCGGAAACTTAAATACATGC 57.618 33.333 0.00 0.00 32.10 4.06
95 96 9.042008 GCTAGAATTGTATTGATCGGAAACTTA 57.958 33.333 0.00 0.00 0.00 2.24
96 97 7.552687 TGCTAGAATTGTATTGATCGGAAACTT 59.447 33.333 0.00 0.00 0.00 2.66
97 98 7.047891 TGCTAGAATTGTATTGATCGGAAACT 58.952 34.615 0.00 0.00 0.00 2.66
98 99 7.246674 TGCTAGAATTGTATTGATCGGAAAC 57.753 36.000 0.00 0.00 0.00 2.78
99 100 7.714813 TCATGCTAGAATTGTATTGATCGGAAA 59.285 33.333 0.00 0.00 0.00 3.13
100 101 7.216494 TCATGCTAGAATTGTATTGATCGGAA 58.784 34.615 0.00 0.00 0.00 4.30
101 102 6.758254 TCATGCTAGAATTGTATTGATCGGA 58.242 36.000 0.00 0.00 0.00 4.55
102 103 7.425577 TTCATGCTAGAATTGTATTGATCGG 57.574 36.000 0.00 0.00 0.00 4.18
119 120 9.918630 GCATGATAAAGGTTTATTATTCATGCT 57.081 29.630 24.94 0.00 42.20 3.79
120 121 9.695526 TGCATGATAAAGGTTTATTATTCATGC 57.304 29.630 25.20 25.20 43.46 4.06
161 162 9.574516 CCCTAGAGGCAATAATAAAGTTGTTAT 57.425 33.333 0.00 0.00 0.00 1.89
162 163 8.974060 CCCTAGAGGCAATAATAAAGTTGTTA 57.026 34.615 0.00 0.00 0.00 2.41
163 164 7.881775 CCCTAGAGGCAATAATAAAGTTGTT 57.118 36.000 0.00 0.00 0.00 2.83
179 180 4.594920 TCTGAAGGAAATATGCCCTAGAGG 59.405 45.833 0.00 0.00 39.47 3.69
180 181 5.815233 TCTGAAGGAAATATGCCCTAGAG 57.185 43.478 0.00 0.00 31.36 2.43
181 182 6.357367 GTTTCTGAAGGAAATATGCCCTAGA 58.643 40.000 0.00 0.00 44.46 2.43
182 183 5.532779 GGTTTCTGAAGGAAATATGCCCTAG 59.467 44.000 0.00 0.00 44.46 3.02
183 184 5.044476 TGGTTTCTGAAGGAAATATGCCCTA 60.044 40.000 0.00 0.00 44.46 3.53
184 185 4.264352 TGGTTTCTGAAGGAAATATGCCCT 60.264 41.667 0.00 0.00 44.46 5.19
185 186 4.023291 TGGTTTCTGAAGGAAATATGCCC 58.977 43.478 0.00 0.00 44.46 5.36
186 187 4.438744 CGTGGTTTCTGAAGGAAATATGCC 60.439 45.833 0.00 0.00 44.46 4.40
187 188 4.156008 ACGTGGTTTCTGAAGGAAATATGC 59.844 41.667 0.00 0.00 44.46 3.14
188 189 5.445939 CGACGTGGTTTCTGAAGGAAATATG 60.446 44.000 0.00 0.00 44.46 1.78
189 190 4.630069 CGACGTGGTTTCTGAAGGAAATAT 59.370 41.667 0.00 0.00 44.46 1.28
190 191 3.991773 CGACGTGGTTTCTGAAGGAAATA 59.008 43.478 0.00 0.00 44.46 1.40
191 192 2.806244 CGACGTGGTTTCTGAAGGAAAT 59.194 45.455 0.00 0.00 44.46 2.17
192 193 2.206750 CGACGTGGTTTCTGAAGGAAA 58.793 47.619 0.00 0.00 41.11 3.13
193 194 1.539496 CCGACGTGGTTTCTGAAGGAA 60.539 52.381 0.00 0.00 0.00 3.36
194 195 0.032952 CCGACGTGGTTTCTGAAGGA 59.967 55.000 0.00 0.00 0.00 3.36
195 196 0.032952 TCCGACGTGGTTTCTGAAGG 59.967 55.000 0.00 0.00 39.52 3.46
196 197 1.000607 TCTCCGACGTGGTTTCTGAAG 60.001 52.381 0.00 0.00 39.52 3.02
197 198 1.034356 TCTCCGACGTGGTTTCTGAA 58.966 50.000 0.00 0.00 39.52 3.02
198 199 1.034356 TTCTCCGACGTGGTTTCTGA 58.966 50.000 0.00 0.00 39.52 3.27
199 200 1.860676 TTTCTCCGACGTGGTTTCTG 58.139 50.000 0.00 0.00 39.52 3.02
218 219 7.071321 CACCCTAAGATAGATAGTGGGTCTTTT 59.929 40.741 0.00 0.00 43.79 2.27
220 221 6.078664 CACCCTAAGATAGATAGTGGGTCTT 58.921 44.000 0.00 0.00 43.79 3.01
222 223 5.642165 TCACCCTAAGATAGATAGTGGGTC 58.358 45.833 0.00 0.00 43.79 4.46
223 224 5.646215 CTCACCCTAAGATAGATAGTGGGT 58.354 45.833 0.00 0.00 46.23 4.51
227 228 5.340891 TGGCTCACCCTAAGATAGATAGT 57.659 43.478 0.00 0.00 33.59 2.12
276 277 3.319198 CTACACCCGTGCACCCCT 61.319 66.667 12.15 0.00 0.00 4.79
278 279 4.404098 CCCTACACCCGTGCACCC 62.404 72.222 12.15 0.00 0.00 4.61
281 282 4.966274 ACCCCCTACACCCGTGCA 62.966 66.667 0.00 0.00 0.00 4.57
283 284 3.766691 CGACCCCCTACACCCGTG 61.767 72.222 0.00 0.00 0.00 4.94
303 305 4.988598 ACCCCGCAGCACAACTCG 62.989 66.667 0.00 0.00 0.00 4.18
313 315 2.204029 ACCCCTCTAAACCCCGCA 60.204 61.111 0.00 0.00 0.00 5.69
317 319 2.681591 GGCCACCCCTCTAAACCC 59.318 66.667 0.00 0.00 0.00 4.11
320 322 3.012722 CCCGGCCACCCCTCTAAA 61.013 66.667 2.24 0.00 0.00 1.85
372 374 4.007644 CCACGCACAGCCTCTCCA 62.008 66.667 0.00 0.00 0.00 3.86
375 377 2.345244 CTTCCACGCACAGCCTCT 59.655 61.111 0.00 0.00 0.00 3.69
376 378 3.426568 GCTTCCACGCACAGCCTC 61.427 66.667 0.00 0.00 0.00 4.70
452 454 1.209261 CCTCCCTCTCTTCTTCCTTGC 59.791 57.143 0.00 0.00 0.00 4.01
453 455 2.545810 ACCTCCCTCTCTTCTTCCTTG 58.454 52.381 0.00 0.00 0.00 3.61
454 456 3.598782 TCTACCTCCCTCTCTTCTTCCTT 59.401 47.826 0.00 0.00 0.00 3.36
466 468 3.772025 CACTGTTCATCTTCTACCTCCCT 59.228 47.826 0.00 0.00 0.00 4.20
468 470 3.196685 AGCACTGTTCATCTTCTACCTCC 59.803 47.826 0.00 0.00 0.00 4.30
484 486 1.391485 CCGAAAACAGATCGAGCACTG 59.609 52.381 2.38 9.31 42.76 3.66
491 493 1.126113 CCAACGACCGAAAACAGATCG 59.874 52.381 0.00 0.00 39.92 3.69
503 505 4.811557 CCTTTAGATCTTCATCCAACGACC 59.188 45.833 0.00 0.00 0.00 4.79
504 506 5.420409 ACCTTTAGATCTTCATCCAACGAC 58.580 41.667 0.00 0.00 0.00 4.34
520 522 7.013274 TCAGTCATTTTGAACCAGAACCTTTAG 59.987 37.037 0.00 0.00 0.00 1.85
523 525 5.200483 TCAGTCATTTTGAACCAGAACCTT 58.800 37.500 0.00 0.00 0.00 3.50
524 526 4.792068 TCAGTCATTTTGAACCAGAACCT 58.208 39.130 0.00 0.00 0.00 3.50
525 527 5.241506 TCATCAGTCATTTTGAACCAGAACC 59.758 40.000 0.00 0.00 0.00 3.62
543 545 9.903682 AGTCACATCAAAATAAAAGTTCATCAG 57.096 29.630 0.00 0.00 0.00 2.90
570 572 7.771826 CGGGAAAAGTAAAAGGGATTGACTATA 59.228 37.037 0.00 0.00 0.00 1.31
578 580 5.509832 ACTACGGGAAAAGTAAAAGGGAT 57.490 39.130 0.00 0.00 0.00 3.85
580 582 4.320714 GCAACTACGGGAAAAGTAAAAGGG 60.321 45.833 0.00 0.00 0.00 3.95
648 654 0.179111 GATCAACACGGGATCTCGCA 60.179 55.000 16.63 0.00 38.47 5.10
668 674 4.049869 TGAAAATAAGTACGTGACGTGCA 58.950 39.130 26.49 8.78 44.29 4.57
732 739 2.696989 TGGCAGTGATATGTGTGGAG 57.303 50.000 0.00 0.00 0.00 3.86
750 757 2.351418 TGCTTTTGTCGTGACTGACTTG 59.649 45.455 1.23 0.25 39.64 3.16
757 764 0.387239 GGGCATGCTTTTGTCGTGAC 60.387 55.000 18.92 0.00 0.00 3.67
758 765 0.821301 TGGGCATGCTTTTGTCGTGA 60.821 50.000 18.92 0.00 0.00 4.35
759 766 0.664166 GTGGGCATGCTTTTGTCGTG 60.664 55.000 18.92 0.00 0.00 4.35
760 767 1.106351 TGTGGGCATGCTTTTGTCGT 61.106 50.000 18.92 0.00 0.00 4.34
892 1060 0.249911 GCCTCCGTGAACAGAGTGTT 60.250 55.000 0.00 0.00 44.37 3.32
931 1101 1.674057 CCGAGGCAGTGAGACCTTT 59.326 57.895 0.00 0.00 36.05 3.11
1074 1281 1.208293 GAGAAGTCCTTGGGGCTGTAG 59.792 57.143 0.00 0.00 0.00 2.74
1110 1317 4.379243 CCGAAGCTGTGCTCGGGT 62.379 66.667 15.42 0.00 41.72 5.28
1409 1616 3.190535 ACAAAGTCGACAAGCAAACAAGT 59.809 39.130 19.50 0.00 0.00 3.16
1411 1618 3.840890 ACAAAGTCGACAAGCAAACAA 57.159 38.095 19.50 0.00 0.00 2.83
1412 1619 3.840890 AACAAAGTCGACAAGCAAACA 57.159 38.095 19.50 0.00 0.00 2.83
1413 1620 4.412207 AGAAACAAAGTCGACAAGCAAAC 58.588 39.130 19.50 4.35 0.00 2.93
1414 1621 4.695217 AGAAACAAAGTCGACAAGCAAA 57.305 36.364 19.50 0.00 0.00 3.68
1523 2286 6.228273 AGATTGTCAACAACTCAACATACG 57.772 37.500 0.00 0.00 38.86 3.06
1578 2344 2.744202 CCTTTGTCTTCTCGATTGGTGG 59.256 50.000 0.00 0.00 0.00 4.61
1613 2379 1.402787 AGGGTGTTTTGTCTGCCAAG 58.597 50.000 0.00 0.00 33.75 3.61
1621 2387 5.221165 CGAGATTTTACCAAGGGTGTTTTGT 60.221 40.000 0.00 0.00 36.19 2.83
1627 2397 2.711542 AGCGAGATTTTACCAAGGGTG 58.288 47.619 0.00 0.00 36.19 4.61
1629 2399 4.451900 ACATAGCGAGATTTTACCAAGGG 58.548 43.478 0.00 0.00 0.00 3.95
1656 2426 6.709643 CCAAGATTTTGCGAAGTACTATCAG 58.290 40.000 0.00 0.00 32.79 2.90
1662 2432 3.552604 TGCCAAGATTTTGCGAAGTAC 57.447 42.857 0.00 0.00 32.79 2.73
1693 2488 9.408648 TCATTCTGTACTCTGTAGATGATAACA 57.591 33.333 0.00 0.00 0.00 2.41
1719 2514 1.178534 CCTCGTGCAATTTGGTGGGT 61.179 55.000 0.00 0.00 0.00 4.51
1794 2589 2.936919 TCTGGTTTGTCATGTGAGCT 57.063 45.000 0.00 0.00 0.00 4.09
1810 2605 3.332034 TGTCTGTGATGTGATGCTTCTG 58.668 45.455 0.88 0.00 0.00 3.02
1895 2690 6.816640 TCTTCAGTAATTTTCCGATACTGTGG 59.183 38.462 10.83 6.49 44.30 4.17
1954 2752 1.541310 CCACCGTCTTGTCCTGCCTA 61.541 60.000 0.00 0.00 0.00 3.93
1959 2757 1.534235 AGCTCCACCGTCTTGTCCT 60.534 57.895 0.00 0.00 0.00 3.85
2255 3053 4.992511 GTACAACGGGCGGGTGCA 62.993 66.667 10.30 0.00 45.35 4.57
2271 3073 0.886043 TGCAAGCTTCAGATGCACGT 60.886 50.000 5.92 0.00 44.52 4.49
2275 3077 1.513586 GCGTGCAAGCTTCAGATGC 60.514 57.895 17.84 0.00 40.45 3.91
2279 3081 2.126965 GCAGCGTGCAAGCTTCAG 60.127 61.111 25.03 14.71 46.80 3.02
2350 3152 1.296392 CTTGTCGCCCCTGATGTGA 59.704 57.895 0.00 0.00 0.00 3.58
2486 3291 2.806382 CGGTGGCAAGGCAAAGATTTTT 60.806 45.455 0.00 0.00 0.00 1.94
2499 3304 4.854047 GTTTCAAGAAATATGCGGTGGCAA 60.854 41.667 0.00 0.00 41.77 4.52
2627 3436 0.458543 ATGTACACGAGCTTCCGCAG 60.459 55.000 0.00 0.00 39.10 5.18
2978 3848 5.103473 TGTGGGGTATCATCTACTCTCTCTT 60.103 44.000 0.00 0.00 0.00 2.85
2979 3849 4.417183 TGTGGGGTATCATCTACTCTCTCT 59.583 45.833 0.00 0.00 0.00 3.10
2983 3853 3.207777 AGGTGTGGGGTATCATCTACTCT 59.792 47.826 0.00 0.00 0.00 3.24
3150 6181 8.347771 AGACCGATTAAAAAGTACAAGGAAAAC 58.652 33.333 0.00 0.00 0.00 2.43
3155 6186 5.704053 ACCAGACCGATTAAAAAGTACAAGG 59.296 40.000 0.00 0.00 0.00 3.61
3259 6303 5.241662 CCCCTTTTTGTTCAAAGTTTGACA 58.758 37.500 17.85 15.23 39.87 3.58
3273 6317 7.936496 AAAATACATATTTGGCCCCTTTTTG 57.064 32.000 0.00 0.00 36.14 2.44
3380 6434 3.971245 TTGAAAGTGCCCAAAACAACT 57.029 38.095 0.00 0.00 0.00 3.16
3391 6445 8.629132 CAAAAGTTGACAAAAATTTGAAAGTGC 58.371 29.630 12.54 0.00 40.55 4.40
3476 6532 7.405292 TGATGGTCATTCTAGGAAAGTTTCAT 58.595 34.615 17.16 12.75 0.00 2.57
3488 6544 3.200605 ACACTGCCATGATGGTCATTCTA 59.799 43.478 13.84 0.00 40.46 2.10
3541 6597 9.745880 TGCCACGTCACTAAAATTATTTTAAAA 57.254 25.926 10.76 2.51 34.93 1.52
3542 6598 9.915629 ATGCCACGTCACTAAAATTATTTTAAA 57.084 25.926 10.76 0.00 34.93 1.52
3544 6600 8.952278 AGATGCCACGTCACTAAAATTATTTTA 58.048 29.630 9.43 9.43 34.19 1.52
3545 6601 7.826690 AGATGCCACGTCACTAAAATTATTTT 58.173 30.769 8.07 8.07 36.67 1.82
3546 6602 7.391148 AGATGCCACGTCACTAAAATTATTT 57.609 32.000 0.00 0.00 0.00 1.40
3547 6603 8.395633 GTTAGATGCCACGTCACTAAAATTATT 58.604 33.333 0.00 0.00 0.00 1.40
3548 6604 7.769044 AGTTAGATGCCACGTCACTAAAATTAT 59.231 33.333 0.00 0.00 0.00 1.28
3556 6612 1.066858 CCAGTTAGATGCCACGTCACT 60.067 52.381 0.00 0.00 0.00 3.41
3629 6685 2.504367 CGGTCAAGTTTCAATCCCACT 58.496 47.619 0.00 0.00 0.00 4.00
3685 6741 8.404000 AGCATCTATGAATCAACATGAACTTTC 58.596 33.333 0.00 0.00 0.00 2.62
3718 6811 3.125316 GCTATGAGAACCAAACCTGAACG 59.875 47.826 0.00 0.00 0.00 3.95
3767 6864 3.525800 ACCTACCTCAAACCTGCAAAT 57.474 42.857 0.00 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.