Multiple sequence alignment - TraesCS1B01G217300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G217300 chr1B 100.000 2933 0 0 1 2933 394115204 394118136 0.000000e+00 5417.0
1 TraesCS1B01G217300 chr1D 93.141 2362 84 26 626 2933 293290720 293293057 0.000000e+00 3393.0
2 TraesCS1B01G217300 chr1D 93.290 611 25 5 2 612 293290081 293290675 0.000000e+00 887.0
3 TraesCS1B01G217300 chr1A 90.578 1921 97 29 845 2721 364935454 364937334 0.000000e+00 2468.0
4 TraesCS1B01G217300 chr1A 91.213 478 22 11 3 464 364934282 364934755 1.480000e-177 632.0
5 TraesCS1B01G217300 chr1A 94.419 215 11 1 2720 2933 364937486 364937700 2.180000e-86 329.0
6 TraesCS1B01G217300 chr4D 87.179 156 19 1 1766 1920 485164405 485164560 3.000000e-40 176.0
7 TraesCS1B01G217300 chr4B 86.538 156 20 1 1766 1920 618348094 618348249 1.400000e-38 171.0
8 TraesCS1B01G217300 chr5A 85.526 152 22 0 1769 1920 666204956 666205107 3.030000e-35 159.0
9 TraesCS1B01G217300 chr7A 85.149 101 14 1 1246 1346 51239428 51239527 5.170000e-18 102.0
10 TraesCS1B01G217300 chr7A 84.158 101 16 0 1246 1346 51055420 51055520 6.690000e-17 99.0
11 TraesCS1B01G217300 chr7A 84.158 101 15 1 1246 1346 51102686 51102785 2.410000e-16 97.1
12 TraesCS1B01G217300 chr7A 83.168 101 17 0 1246 1346 51175446 51175546 3.110000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G217300 chr1B 394115204 394118136 2932 False 5417 5417 100.0000 1 2933 1 chr1B.!!$F1 2932
1 TraesCS1B01G217300 chr1D 293290081 293293057 2976 False 2140 3393 93.2155 2 2933 2 chr1D.!!$F1 2931
2 TraesCS1B01G217300 chr1A 364934282 364937700 3418 False 1143 2468 92.0700 3 2933 3 chr1A.!!$F1 2930

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
367 383 0.179094 ACGTGACTTTGCTTGGACGA 60.179 50.0 0.0 0.0 0.0 4.2 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1977 2420 0.241213 GCCTTGCTCTCCGGAAAAAC 59.759 55.0 5.23 0.0 0.0 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 9.143631 CATTTCATGTCGTAGATATCAGCATAA 57.856 33.333 5.32 0.00 35.77 1.90
80 81 5.010213 GGCGGGGCAAATGTAAATCTTTATA 59.990 40.000 0.00 0.00 0.00 0.98
129 133 1.143813 ATGCCAACCTATCCCCTCAG 58.856 55.000 0.00 0.00 0.00 3.35
166 170 6.589907 GCCCGTTTTCATTATTTGATTTGACT 59.410 34.615 0.00 0.00 33.34 3.41
210 214 7.880713 GGTATCTCTCCTTTTATTCTTCCATCC 59.119 40.741 0.00 0.00 0.00 3.51
366 382 0.655733 AACGTGACTTTGCTTGGACG 59.344 50.000 0.00 0.00 0.00 4.79
367 383 0.179094 ACGTGACTTTGCTTGGACGA 60.179 50.000 0.00 0.00 0.00 4.20
368 384 0.232303 CGTGACTTTGCTTGGACGAC 59.768 55.000 0.00 0.00 0.00 4.34
388 404 0.933097 CATCAGTCCATGCGTACTGC 59.067 55.000 13.37 3.22 42.31 4.40
473 489 1.880027 GATCATTGGTAATGGTCGGCC 59.120 52.381 0.00 0.00 39.06 6.13
512 529 4.572389 GCTTCAAATATCATCACACCGTCT 59.428 41.667 0.00 0.00 0.00 4.18
573 590 4.305539 TCAAAAGATGCTCCATTCTCCA 57.694 40.909 0.00 0.00 0.00 3.86
574 591 4.665451 TCAAAAGATGCTCCATTCTCCAA 58.335 39.130 0.00 0.00 0.00 3.53
575 592 4.703575 TCAAAAGATGCTCCATTCTCCAAG 59.296 41.667 0.00 0.00 0.00 3.61
576 593 2.345124 AGATGCTCCATTCTCCAAGC 57.655 50.000 0.00 0.00 35.31 4.01
577 594 0.942962 GATGCTCCATTCTCCAAGCG 59.057 55.000 0.00 0.00 37.57 4.68
578 595 0.254178 ATGCTCCATTCTCCAAGCGT 59.746 50.000 0.00 0.00 37.57 5.07
579 596 0.391661 TGCTCCATTCTCCAAGCGTC 60.392 55.000 0.00 0.00 37.57 5.19
580 597 1.424493 GCTCCATTCTCCAAGCGTCG 61.424 60.000 0.00 0.00 0.00 5.12
581 598 1.424493 CTCCATTCTCCAAGCGTCGC 61.424 60.000 9.80 9.80 0.00 5.19
582 599 2.464459 CCATTCTCCAAGCGTCGCC 61.464 63.158 14.86 0.00 0.00 5.54
583 600 1.741401 CATTCTCCAAGCGTCGCCA 60.741 57.895 14.86 0.00 0.00 5.69
584 601 1.741770 ATTCTCCAAGCGTCGCCAC 60.742 57.895 14.86 0.00 0.00 5.01
585 602 2.449031 ATTCTCCAAGCGTCGCCACA 62.449 55.000 14.86 0.00 0.00 4.17
613 630 1.975660 ACTTTTCGTTGCTTAGCCCA 58.024 45.000 0.29 0.00 0.00 5.36
614 631 1.607148 ACTTTTCGTTGCTTAGCCCAC 59.393 47.619 0.29 0.00 0.00 4.61
615 632 1.606668 CTTTTCGTTGCTTAGCCCACA 59.393 47.619 0.29 0.00 0.00 4.17
616 633 1.234821 TTTCGTTGCTTAGCCCACAG 58.765 50.000 0.29 0.00 0.00 3.66
617 634 0.605319 TTCGTTGCTTAGCCCACAGG 60.605 55.000 0.29 0.00 0.00 4.00
649 711 0.835941 AGGTATGCAGCTTCTCCCAG 59.164 55.000 0.00 0.00 0.00 4.45
708 770 1.929230 GCTAACGAGCTCCTTCTTCC 58.071 55.000 8.47 0.00 45.98 3.46
732 794 3.553828 TTTAGAATAGAACGGGCCTGG 57.446 47.619 18.00 4.46 0.00 4.45
733 795 0.756903 TAGAATAGAACGGGCCTGGC 59.243 55.000 18.00 11.05 0.00 4.85
734 796 1.887707 GAATAGAACGGGCCTGGCG 60.888 63.158 18.00 7.52 0.00 5.69
761 824 1.738099 CCAACCGACTCTTGCTCCG 60.738 63.158 0.00 0.00 0.00 4.63
951 1381 2.756760 CACCACCAAATCCAAGGATCAG 59.243 50.000 1.37 0.00 33.08 2.90
1119 1562 4.598894 CGCTCCATCAGCCTCCCG 62.599 72.222 0.00 0.00 46.74 5.14
1557 2000 4.891566 GTGGACGAGATCACGCTT 57.108 55.556 12.66 0.00 36.70 4.68
1920 2363 1.598962 GCTGCTCAACCTGCTCACA 60.599 57.895 0.00 0.00 0.00 3.58
1923 2366 1.227943 GCTCAACCTGCTCACACCA 60.228 57.895 0.00 0.00 0.00 4.17
1977 2420 2.125912 CGGCTTGAGAGACACCGG 60.126 66.667 0.00 0.00 40.18 5.28
1984 2427 2.249844 TGAGAGACACCGGTTTTTCC 57.750 50.000 2.97 0.00 0.00 3.13
2026 2469 3.634448 GAGCCTGTGAGATTAGTGCTAGA 59.366 47.826 0.00 0.00 0.00 2.43
2033 2476 5.009110 TGTGAGATTAGTGCTAGAGATTCCG 59.991 44.000 0.00 0.00 0.00 4.30
2141 2587 9.313118 GAAAACCTTGTGATGAATTGTTTACTT 57.687 29.630 0.00 0.00 0.00 2.24
2143 2589 7.346751 ACCTTGTGATGAATTGTTTACTTGT 57.653 32.000 0.00 0.00 0.00 3.16
2151 2597 9.288576 TGATGAATTGTTTACTTGTCAATCTCT 57.711 29.630 0.00 0.00 32.39 3.10
2157 2603 7.067496 TGTTTACTTGTCAATCTCTTCCTCT 57.933 36.000 0.00 0.00 0.00 3.69
2158 2604 7.155328 TGTTTACTTGTCAATCTCTTCCTCTC 58.845 38.462 0.00 0.00 0.00 3.20
2169 2615 7.285172 TCAATCTCTTCCTCTCAATACTCTCTG 59.715 40.741 0.00 0.00 0.00 3.35
2170 2616 5.445069 TCTCTTCCTCTCAATACTCTCTGG 58.555 45.833 0.00 0.00 0.00 3.86
2171 2617 5.044476 TCTCTTCCTCTCAATACTCTCTGGT 60.044 44.000 0.00 0.00 0.00 4.00
2172 2618 5.197451 TCTTCCTCTCAATACTCTCTGGTC 58.803 45.833 0.00 0.00 0.00 4.02
2174 2620 4.787551 TCCTCTCAATACTCTCTGGTCTC 58.212 47.826 0.00 0.00 0.00 3.36
2175 2621 4.476846 TCCTCTCAATACTCTCTGGTCTCT 59.523 45.833 0.00 0.00 0.00 3.10
2176 2622 4.580167 CCTCTCAATACTCTCTGGTCTCTG 59.420 50.000 0.00 0.00 0.00 3.35
2177 2623 3.951037 TCTCAATACTCTCTGGTCTCTGC 59.049 47.826 0.00 0.00 0.00 4.26
2178 2624 3.698539 CTCAATACTCTCTGGTCTCTGCA 59.301 47.826 0.00 0.00 0.00 4.41
2180 2626 4.713814 TCAATACTCTCTGGTCTCTGCATT 59.286 41.667 0.00 0.00 0.00 3.56
2181 2627 4.669206 ATACTCTCTGGTCTCTGCATTG 57.331 45.455 0.00 0.00 0.00 2.82
2182 2628 1.554160 ACTCTCTGGTCTCTGCATTGG 59.446 52.381 0.00 0.00 0.00 3.16
2183 2629 1.554160 CTCTCTGGTCTCTGCATTGGT 59.446 52.381 0.00 0.00 0.00 3.67
2184 2630 1.277273 TCTCTGGTCTCTGCATTGGTG 59.723 52.381 0.00 0.00 0.00 4.17
2185 2631 1.002888 CTCTGGTCTCTGCATTGGTGT 59.997 52.381 0.00 0.00 0.00 4.16
2203 2649 3.694072 GGTGTTGTGCTATGCATCCTTTA 59.306 43.478 0.19 0.00 41.91 1.85
2204 2650 4.157656 GGTGTTGTGCTATGCATCCTTTAA 59.842 41.667 0.19 0.00 41.91 1.52
2205 2651 5.095490 GTGTTGTGCTATGCATCCTTTAAC 58.905 41.667 0.19 5.82 41.91 2.01
2206 2652 5.009631 TGTTGTGCTATGCATCCTTTAACT 58.990 37.500 0.19 0.00 41.91 2.24
2207 2653 5.123820 TGTTGTGCTATGCATCCTTTAACTC 59.876 40.000 0.19 0.00 41.91 3.01
2208 2654 5.102953 TGTGCTATGCATCCTTTAACTCT 57.897 39.130 0.19 0.00 41.91 3.24
2209 2655 4.877823 TGTGCTATGCATCCTTTAACTCTG 59.122 41.667 0.19 0.00 41.91 3.35
2210 2656 4.878397 GTGCTATGCATCCTTTAACTCTGT 59.122 41.667 0.19 0.00 41.91 3.41
2221 2667 4.142730 CCTTTAACTCTGTCTGCATTGCTC 60.143 45.833 10.49 1.58 0.00 4.26
2244 2690 2.230660 GCAGGAGTACCCCAATAATGC 58.769 52.381 0.00 0.00 36.73 3.56
2256 2702 4.586001 CCCCAATAATGCACTTGATTAGCT 59.414 41.667 6.98 0.00 0.00 3.32
2265 2711 6.639632 TGCACTTGATTAGCTTTTCTTTCT 57.360 33.333 0.00 0.00 0.00 2.52
2266 2712 6.672147 TGCACTTGATTAGCTTTTCTTTCTC 58.328 36.000 0.00 0.00 0.00 2.87
2269 2715 7.536964 GCACTTGATTAGCTTTTCTTTCTCTTC 59.463 37.037 0.00 0.00 0.00 2.87
2292 2738 3.795688 TTCTCCCTTGTTCTTGAGCAT 57.204 42.857 0.00 0.00 0.00 3.79
2293 2739 3.795688 TCTCCCTTGTTCTTGAGCATT 57.204 42.857 0.00 0.00 0.00 3.56
2294 2740 3.415212 TCTCCCTTGTTCTTGAGCATTG 58.585 45.455 0.00 0.00 0.00 2.82
2295 2741 3.152341 CTCCCTTGTTCTTGAGCATTGT 58.848 45.455 0.00 0.00 0.00 2.71
2296 2742 2.886523 TCCCTTGTTCTTGAGCATTGTG 59.113 45.455 0.00 0.00 0.00 3.33
2297 2743 2.029649 CCCTTGTTCTTGAGCATTGTGG 60.030 50.000 0.00 0.00 0.00 4.17
2298 2744 2.886523 CCTTGTTCTTGAGCATTGTGGA 59.113 45.455 0.00 0.00 0.00 4.02
2301 2747 4.771590 TGTTCTTGAGCATTGTGGAATC 57.228 40.909 0.00 0.00 0.00 2.52
2323 2769 4.638421 TCGTGTTCTTTCCATTTCAACTGT 59.362 37.500 0.00 0.00 0.00 3.55
2325 2771 5.220854 CGTGTTCTTTCCATTTCAACTGTCT 60.221 40.000 0.00 0.00 0.00 3.41
2519 2995 3.673323 CGATCAGTGACCAAACTCGATCA 60.673 47.826 5.80 0.00 36.06 2.92
2560 3036 1.531423 CTGCAGCTGAGGTTGACATT 58.469 50.000 20.43 0.00 0.00 2.71
2573 3049 1.155889 TGACATTCATCCACACGCAC 58.844 50.000 0.00 0.00 0.00 5.34
2692 3179 7.544566 CAGAAACCAAAATGATCTCCTGAATTG 59.455 37.037 0.00 0.00 0.00 2.32
2850 3491 1.478631 AGGTTACCGTACACCTAGCC 58.521 55.000 0.84 0.00 41.97 3.93
2927 3568 5.394115 CCAACTTAACAAGAAAAGTGGCTGT 60.394 40.000 0.00 0.00 36.12 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 4.603131 TGTGTACTACTCCCTCCGTAAAT 58.397 43.478 0.00 0.00 0.00 1.40
129 133 5.054390 TGAAAACGGGCTTACATTGATTC 57.946 39.130 0.00 0.00 0.00 2.52
166 170 6.236409 AGATACCTCCAGTTCGATCGTTATA 58.764 40.000 15.94 0.00 0.00 0.98
366 382 1.137086 AGTACGCATGGACTGATGGTC 59.863 52.381 0.00 0.00 43.79 4.02
367 383 1.134699 CAGTACGCATGGACTGATGGT 60.135 52.381 1.29 0.00 44.88 3.55
368 384 1.575244 CAGTACGCATGGACTGATGG 58.425 55.000 1.29 0.00 44.88 3.51
388 404 2.224137 TGCGCTCTCAGAATAATGGAGG 60.224 50.000 9.73 0.00 0.00 4.30
473 489 1.464997 GAAGCCTGTCAAGTTAAGCGG 59.535 52.381 0.00 0.00 0.00 5.52
512 529 2.831685 TTAGCGTCTTTGGCTCTTCA 57.168 45.000 0.00 0.00 41.80 3.02
567 584 2.357034 GTGGCGACGCTTGGAGAA 60.357 61.111 20.77 0.00 38.02 2.87
568 585 3.158537 TTGTGGCGACGCTTGGAGA 62.159 57.895 20.77 0.00 42.82 3.71
570 587 2.664851 CTTGTGGCGACGCTTGGA 60.665 61.111 20.77 3.19 42.82 3.53
571 588 2.664851 TCTTGTGGCGACGCTTGG 60.665 61.111 20.77 6.19 42.82 3.61
573 590 3.036084 CGTCTTGTGGCGACGCTT 61.036 61.111 20.77 0.00 46.12 4.68
577 594 0.319297 AGTTACCGTCTTGTGGCGAC 60.319 55.000 0.00 0.00 0.00 5.19
578 595 0.390124 AAGTTACCGTCTTGTGGCGA 59.610 50.000 0.00 0.00 0.00 5.54
579 596 1.223187 AAAGTTACCGTCTTGTGGCG 58.777 50.000 0.00 0.00 0.00 5.69
580 597 2.349155 CGAAAAGTTACCGTCTTGTGGC 60.349 50.000 0.00 0.00 0.00 5.01
581 598 2.867975 ACGAAAAGTTACCGTCTTGTGG 59.132 45.455 0.00 0.00 29.82 4.17
582 599 4.268522 CAACGAAAAGTTACCGTCTTGTG 58.731 43.478 0.00 0.00 42.02 3.33
583 600 3.242511 GCAACGAAAAGTTACCGTCTTGT 60.243 43.478 0.00 0.00 42.02 3.16
584 601 3.001939 AGCAACGAAAAGTTACCGTCTTG 59.998 43.478 0.00 1.62 42.02 3.02
585 602 3.200483 AGCAACGAAAAGTTACCGTCTT 58.800 40.909 0.00 0.00 42.02 3.01
613 630 1.341156 CCTAGCCTTAGCCAGCCTGT 61.341 60.000 0.00 0.00 41.25 4.00
614 631 1.341156 ACCTAGCCTTAGCCAGCCTG 61.341 60.000 0.00 0.00 41.25 4.85
615 632 0.264955 TACCTAGCCTTAGCCAGCCT 59.735 55.000 0.00 0.00 41.25 4.58
616 633 1.002544 CATACCTAGCCTTAGCCAGCC 59.997 57.143 0.00 0.00 41.25 4.85
617 634 1.609320 GCATACCTAGCCTTAGCCAGC 60.609 57.143 0.00 0.00 41.25 4.85
618 635 1.694150 TGCATACCTAGCCTTAGCCAG 59.306 52.381 0.00 0.00 41.25 4.85
619 636 1.694150 CTGCATACCTAGCCTTAGCCA 59.306 52.381 0.00 0.00 41.25 4.75
629 691 2.042464 CTGGGAGAAGCTGCATACCTA 58.958 52.381 1.02 0.00 0.00 3.08
630 692 0.835941 CTGGGAGAAGCTGCATACCT 59.164 55.000 1.02 0.00 0.00 3.08
631 693 0.833287 TCTGGGAGAAGCTGCATACC 59.167 55.000 1.02 0.00 0.00 2.73
632 694 2.559440 CTTCTGGGAGAAGCTGCATAC 58.441 52.381 1.02 0.00 44.35 2.39
633 695 2.996249 CTTCTGGGAGAAGCTGCATA 57.004 50.000 1.02 0.00 44.35 3.14
634 696 3.877951 CTTCTGGGAGAAGCTGCAT 57.122 52.632 1.02 0.00 44.35 3.96
741 803 2.032681 AGCAAGAGTCGGTTGGCC 59.967 61.111 0.00 0.00 0.00 5.36
742 804 2.035442 GGAGCAAGAGTCGGTTGGC 61.035 63.158 0.00 0.00 0.00 4.52
743 805 1.738099 CGGAGCAAGAGTCGGTTGG 60.738 63.158 0.00 0.00 0.00 3.77
761 824 2.181521 TGGAACACGTTTGACCGCC 61.182 57.895 0.00 0.00 0.00 6.13
951 1381 0.238553 GGAGAAAGCTTTGTGGCGTC 59.761 55.000 18.30 0.00 37.29 5.19
1977 2420 0.241213 GCCTTGCTCTCCGGAAAAAC 59.759 55.000 5.23 0.00 0.00 2.43
2026 2469 3.744426 ACAAACGAATCGAAACGGAATCT 59.256 39.130 10.55 0.00 0.00 2.40
2033 2476 4.025145 AGGAGTCAACAAACGAATCGAAAC 60.025 41.667 10.55 0.00 0.00 2.78
2141 2587 6.894654 AGAGTATTGAGAGGAAGAGATTGACA 59.105 38.462 0.00 0.00 0.00 3.58
2143 2589 7.285172 CAGAGAGTATTGAGAGGAAGAGATTGA 59.715 40.741 0.00 0.00 0.00 2.57
2151 2597 5.044476 AGAGACCAGAGAGTATTGAGAGGAA 60.044 44.000 0.00 0.00 0.00 3.36
2157 2603 3.701664 TGCAGAGACCAGAGAGTATTGA 58.298 45.455 0.00 0.00 0.00 2.57
2158 2604 4.669206 ATGCAGAGACCAGAGAGTATTG 57.331 45.455 0.00 0.00 0.00 1.90
2169 2615 1.267806 CACAACACCAATGCAGAGACC 59.732 52.381 0.00 0.00 0.00 3.85
2170 2616 1.335324 GCACAACACCAATGCAGAGAC 60.335 52.381 0.00 0.00 39.23 3.36
2171 2617 0.953727 GCACAACACCAATGCAGAGA 59.046 50.000 0.00 0.00 39.23 3.10
2172 2618 0.956633 AGCACAACACCAATGCAGAG 59.043 50.000 0.00 0.00 41.97 3.35
2174 2620 2.871133 CATAGCACAACACCAATGCAG 58.129 47.619 0.00 0.00 41.97 4.41
2175 2621 1.067706 GCATAGCACAACACCAATGCA 60.068 47.619 0.00 0.00 41.97 3.96
2176 2622 1.067706 TGCATAGCACAACACCAATGC 60.068 47.619 0.00 0.00 40.03 3.56
2177 2623 3.441163 GATGCATAGCACAACACCAATG 58.559 45.455 0.00 0.00 43.04 2.82
2178 2624 2.428171 GGATGCATAGCACAACACCAAT 59.572 45.455 0.00 0.00 43.04 3.16
2180 2626 1.004628 AGGATGCATAGCACAACACCA 59.995 47.619 0.00 0.00 43.04 4.17
2181 2627 1.755179 AGGATGCATAGCACAACACC 58.245 50.000 0.00 0.00 43.04 4.16
2182 2628 3.855689 AAAGGATGCATAGCACAACAC 57.144 42.857 0.00 0.00 43.04 3.32
2183 2629 5.009631 AGTTAAAGGATGCATAGCACAACA 58.990 37.500 0.00 0.00 43.04 3.33
2184 2630 5.355350 AGAGTTAAAGGATGCATAGCACAAC 59.645 40.000 0.00 2.02 43.04 3.32
2185 2631 5.355071 CAGAGTTAAAGGATGCATAGCACAA 59.645 40.000 0.00 0.00 43.04 3.33
2203 2649 1.270518 ACGAGCAATGCAGACAGAGTT 60.271 47.619 8.35 0.00 0.00 3.01
2204 2650 0.319728 ACGAGCAATGCAGACAGAGT 59.680 50.000 8.35 0.00 0.00 3.24
2205 2651 0.720027 CACGAGCAATGCAGACAGAG 59.280 55.000 8.35 0.00 0.00 3.35
2206 2652 1.293963 GCACGAGCAATGCAGACAGA 61.294 55.000 8.35 0.00 42.88 3.41
2207 2653 1.134075 GCACGAGCAATGCAGACAG 59.866 57.895 8.35 0.00 42.88 3.51
2208 2654 3.256936 GCACGAGCAATGCAGACA 58.743 55.556 8.35 0.00 42.88 3.41
2221 2667 0.828022 TATTGGGGTACTCCTGCACG 59.172 55.000 14.34 0.00 35.33 5.34
2227 2673 3.577805 AGTGCATTATTGGGGTACTCC 57.422 47.619 4.21 4.21 0.00 3.85
2244 2690 8.782144 AGAAGAGAAAGAAAAGCTAATCAAGTG 58.218 33.333 0.00 0.00 0.00 3.16
2256 2702 7.615757 ACAAGGGAGAAAAGAAGAGAAAGAAAA 59.384 33.333 0.00 0.00 0.00 2.29
2265 2711 6.001449 TCAAGAACAAGGGAGAAAAGAAGA 57.999 37.500 0.00 0.00 0.00 2.87
2266 2712 5.278218 GCTCAAGAACAAGGGAGAAAAGAAG 60.278 44.000 0.00 0.00 0.00 2.85
2269 2715 3.885297 TGCTCAAGAACAAGGGAGAAAAG 59.115 43.478 0.00 0.00 0.00 2.27
2276 2722 2.029649 CCACAATGCTCAAGAACAAGGG 60.030 50.000 0.00 0.00 0.00 3.95
2292 2738 3.546724 TGGAAAGAACACGATTCCACAA 58.453 40.909 2.48 0.00 45.71 3.33
2293 2739 3.201353 TGGAAAGAACACGATTCCACA 57.799 42.857 2.48 0.00 45.71 4.17
2296 2742 5.371115 TGAAATGGAAAGAACACGATTCC 57.629 39.130 0.00 0.00 42.39 3.01
2297 2743 6.360681 CAGTTGAAATGGAAAGAACACGATTC 59.639 38.462 0.00 0.00 0.00 2.52
2298 2744 6.183360 ACAGTTGAAATGGAAAGAACACGATT 60.183 34.615 0.00 0.00 0.00 3.34
2301 2747 4.920376 ACAGTTGAAATGGAAAGAACACG 58.080 39.130 0.00 0.00 0.00 4.49
2400 2876 2.083774 CGCCCAAGCAACAGAAAGATA 58.916 47.619 0.00 0.00 39.83 1.98
2519 2995 1.222936 CAGGGAGAAGCTGGCGATT 59.777 57.895 0.00 0.00 0.00 3.34
2553 3029 1.535028 GTGCGTGTGGATGAATGTCAA 59.465 47.619 0.00 0.00 0.00 3.18
2560 3036 1.218047 GCTAGGTGCGTGTGGATGA 59.782 57.895 0.00 0.00 0.00 2.92
2573 3049 2.905880 GCATGCAGGGCAGCTAGG 60.906 66.667 14.21 0.00 43.65 3.02
2692 3179 4.150451 GTGACATGGCATTGTAAGTTTTGC 59.850 41.667 3.50 0.00 0.00 3.68
2745 3385 1.066303 GTACTCTCCCGCAGATGTGAG 59.934 57.143 0.00 0.00 0.00 3.51
2850 3491 1.373371 GGCTGCTTTCGCCTTTTGG 60.373 57.895 0.00 0.00 44.17 3.28
2883 3524 1.872679 GTTCAGACGGACGATCGGC 60.873 63.158 20.98 17.86 38.69 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.