Multiple sequence alignment - TraesCS1B01G216900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G216900 chr1B 100.000 2077 0 0 1 2077 392834774 392832698 0.000000e+00 3836.0
1 TraesCS1B01G216900 chr1B 92.375 459 23 3 362 819 392747131 392747578 0.000000e+00 643.0
2 TraesCS1B01G216900 chr1B 100.000 256 0 0 2408 2663 392832367 392832112 8.630000e-130 473.0
3 TraesCS1B01G216900 chr1B 96.759 216 7 0 1 216 649979074 649978859 7.010000e-96 361.0
4 TraesCS1B01G216900 chr1B 94.366 213 10 1 1867 2077 546145235 546145023 2.560000e-85 326.0
5 TraesCS1B01G216900 chr1B 85.461 282 30 4 758 1031 392747592 392747870 1.560000e-72 283.0
6 TraesCS1B01G216900 chr1B 88.496 226 23 2 1027 1252 392754449 392754671 1.210000e-68 270.0
7 TraesCS1B01G216900 chr1D 92.964 1137 66 11 737 1868 291840924 291839797 0.000000e+00 1644.0
8 TraesCS1B01G216900 chr1D 91.164 928 69 7 737 1658 291800541 291801461 0.000000e+00 1247.0
9 TraesCS1B01G216900 chr1D 94.092 457 16 2 367 820 291800008 291800456 0.000000e+00 684.0
10 TraesCS1B01G216900 chr1D 93.682 459 18 2 365 820 291841459 291841009 0.000000e+00 676.0
11 TraesCS1B01G216900 chr1D 90.558 233 21 1 3 235 79977606 79977837 9.260000e-80 307.0
12 TraesCS1B01G216900 chr1D 92.593 189 11 2 362 547 291799519 291799707 4.370000e-68 268.0
13 TraesCS1B01G216900 chr1D 94.872 39 0 2 254 290 291799943 291799981 2.860000e-05 60.2
14 TraesCS1B01G216900 chr1D 94.872 39 0 2 254 290 291841522 291841484 2.860000e-05 60.2
15 TraesCS1B01G216900 chr1A 87.230 556 47 6 1244 1779 364041236 364041787 1.750000e-171 612.0
16 TraesCS1B01G216900 chr1A 85.408 466 27 11 354 819 364040473 364040897 1.880000e-121 446.0
17 TraesCS1B01G216900 chr1A 95.045 222 9 2 1 221 510357297 510357077 5.460000e-92 348.0
18 TraesCS1B01G216900 chr1A 95.215 209 10 0 1869 2077 15902141 15902349 5.490000e-87 331.0
19 TraesCS1B01G216900 chr1A 94.037 218 9 4 1863 2077 5637395 5637179 7.110000e-86 327.0
20 TraesCS1B01G216900 chr1A 89.787 235 24 0 1 235 240946350 240946584 4.310000e-78 302.0
21 TraesCS1B01G216900 chr6B 96.311 244 7 2 1 243 142695090 142695332 1.490000e-107 399.0
22 TraesCS1B01G216900 chr2B 96.680 241 7 1 2 241 321960138 321960378 1.490000e-107 399.0
23 TraesCS1B01G216900 chr2B 96.789 218 7 0 1 218 89528423 89528640 5.420000e-97 364.0
24 TraesCS1B01G216900 chr2B 96.744 215 7 0 1 215 159011929 159012143 2.520000e-95 359.0
25 TraesCS1B01G216900 chr2B 95.928 221 9 0 1 221 250057490 250057270 2.520000e-95 359.0
26 TraesCS1B01G216900 chr2B 91.797 256 21 0 2408 2663 743701184 743701439 9.070000e-95 357.0
27 TraesCS1B01G216900 chr2B 91.765 255 21 0 2408 2662 359345502 359345756 3.260000e-94 355.0
28 TraesCS1B01G216900 chr2B 91.406 256 22 0 2408 2663 738234509 738234764 4.220000e-93 351.0
29 TraesCS1B01G216900 chr2B 95.215 209 10 0 1869 2077 783702708 783702916 5.490000e-87 331.0
30 TraesCS1B01G216900 chr7B 95.868 242 9 1 1 241 552537697 552537456 8.940000e-105 390.0
31 TraesCS1B01G216900 chr7B 97.285 221 6 0 1 221 220147265 220147045 2.500000e-100 375.0
32 TraesCS1B01G216900 chr7B 96.789 218 6 1 1 218 685272421 685272637 1.950000e-96 363.0
33 TraesCS1B01G216900 chr7B 91.797 256 20 1 2408 2663 24066250 24066504 3.260000e-94 355.0
34 TraesCS1B01G216900 chr7B 91.406 256 22 0 2408 2663 739479659 739479914 4.220000e-93 351.0
35 TraesCS1B01G216900 chr5B 95.868 242 9 1 1 241 292729431 292729190 8.940000e-105 390.0
36 TraesCS1B01G216900 chr5B 92.578 256 19 0 2408 2663 549967656 549967401 4.190000e-98 368.0
37 TraesCS1B01G216900 chr5B 92.188 256 20 0 2408 2663 35307053 35307308 1.950000e-96 363.0
38 TraesCS1B01G216900 chr5B 96.313 217 8 0 1 217 254152104 254152320 9.070000e-95 357.0
39 TraesCS1B01G216900 chr5B 95.694 209 9 0 1869 2077 613149222 613149014 1.180000e-88 337.0
40 TraesCS1B01G216900 chr5B 94.787 211 10 1 1867 2077 665955093 665955302 7.110000e-86 327.0
41 TraesCS1B01G216900 chr5D 93.750 256 16 0 2408 2663 560487881 560488136 4.160000e-103 385.0
42 TraesCS1B01G216900 chr5D 91.983 237 19 0 1 237 415734921 415734685 1.530000e-87 333.0
43 TraesCS1B01G216900 chr3B 96.789 218 7 0 1 218 375225848 375226065 5.420000e-97 364.0
44 TraesCS1B01G216900 chr3B 95.215 209 10 0 1869 2077 790618933 790618725 5.490000e-87 331.0
45 TraesCS1B01G216900 chrUn 92.188 256 20 0 2408 2663 304653732 304653987 1.950000e-96 363.0
46 TraesCS1B01G216900 chrUn 92.547 161 9 3 1 159 470718286 470718127 7.420000e-56 228.0
47 TraesCS1B01G216900 chrUn 90.566 106 9 1 7 112 354839161 354839057 3.570000e-29 139.0
48 TraesCS1B01G216900 chrUn 90.566 106 9 1 7 112 365394355 365394459 3.570000e-29 139.0
49 TraesCS1B01G216900 chrUn 83.478 115 17 2 7 121 24961913 24962025 3.630000e-19 106.0
50 TraesCS1B01G216900 chrUn 83.036 112 17 2 10 121 410416417 410416526 1.690000e-17 100.0
51 TraesCS1B01G216900 chr3A 96.759 216 7 0 1 216 344148539 344148754 7.010000e-96 361.0
52 TraesCS1B01G216900 chr3A 95.475 221 10 0 1 221 633902363 633902143 1.170000e-93 353.0
53 TraesCS1B01G216900 chr4A 93.061 245 16 1 1 244 717949399 717949155 9.070000e-95 357.0
54 TraesCS1B01G216900 chr4A 95.413 218 10 0 1 218 478068916 478069133 5.460000e-92 348.0
55 TraesCS1B01G216900 chr4A 95.694 209 9 0 1869 2077 726958242 726958034 1.180000e-88 337.0
56 TraesCS1B01G216900 chr2A 95.909 220 9 0 2 221 716908100 716907881 9.070000e-95 357.0
57 TraesCS1B01G216900 chr2A 95.261 211 9 1 1868 2077 773722706 773722496 1.530000e-87 333.0
58 TraesCS1B01G216900 chr7A 95.067 223 9 1 1 221 167250640 167250418 1.520000e-92 350.0
59 TraesCS1B01G216900 chr7A 95.413 218 10 0 1 218 476424599 476424382 5.460000e-92 348.0
60 TraesCS1B01G216900 chr5A 94.954 218 11 0 1 218 338225807 338226024 2.540000e-90 342.0
61 TraesCS1B01G216900 chr4D 90.040 251 23 2 1 250 381566135 381566384 9.190000e-85 324.0
62 TraesCS1B01G216900 chr4D 91.139 237 21 0 1 237 203634898 203635134 3.310000e-84 322.0
63 TraesCS1B01G216900 chr4D 89.815 216 20 2 1 215 373659504 373659718 2.610000e-70 276.0
64 TraesCS1B01G216900 chr4D 85.345 116 14 3 6 121 416206253 416206141 1.670000e-22 117.0
65 TraesCS1B01G216900 chr7D 89.916 238 22 2 1 237 583474779 583474543 3.330000e-79 305.0
66 TraesCS1B01G216900 chr3D 90.698 215 20 0 1 215 600582907 600583121 1.210000e-73 287.0
67 TraesCS1B01G216900 chr3D 86.498 237 29 2 1 237 369481710 369481943 9.460000e-65 257.0
68 TraesCS1B01G216900 chr3D 90.104 192 18 1 1 192 107658654 107658844 5.690000e-62 248.0
69 TraesCS1B01G216900 chr4B 88.085 235 27 1 1 235 455878809 455879042 7.260000e-71 278.0
70 TraesCS1B01G216900 chr6D 90.517 116 11 0 1 116 118600105 118599990 1.280000e-33 154.0
71 TraesCS1B01G216900 chr6D 87.069 116 14 1 1 116 67401047 67400933 2.150000e-26 130.0
72 TraesCS1B01G216900 chr6D 82.609 115 19 1 1 115 6481236 6481349 1.690000e-17 100.0
73 TraesCS1B01G216900 chr6D 82.143 112 19 1 3 113 7409221 7409332 7.850000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G216900 chr1B 392832112 392834774 2662 True 2154.5 3836 100.000000 1 2663 2 chr1B.!!$R3 2662
1 TraesCS1B01G216900 chr1B 392747131 392747870 739 False 463.0 643 88.918000 362 1031 2 chr1B.!!$F2 669
2 TraesCS1B01G216900 chr1D 291839797 291841522 1725 True 793.4 1644 93.839333 254 1868 3 chr1D.!!$R1 1614
3 TraesCS1B01G216900 chr1D 291799519 291801461 1942 False 564.8 1247 93.180250 254 1658 4 chr1D.!!$F2 1404
4 TraesCS1B01G216900 chr1A 364040473 364041787 1314 False 529.0 612 86.319000 354 1779 2 chr1A.!!$F3 1425

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
214 215 0.108138 CCGCTCCCAAACTCTACCTG 60.108 60.0 0.0 0.0 0.0 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1907 2281 0.107703 CCCACGAGGCTCAAGCAATA 60.108 55.0 15.95 0.0 44.36 1.9 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.401550 AGTTTGTCAAAACATATCCATGCG 58.598 37.500 0.00 0.00 46.80 4.73
24 25 4.368874 TTGTCAAAACATATCCATGCGG 57.631 40.909 0.00 0.00 35.39 5.69
25 26 2.687425 TGTCAAAACATATCCATGCGGG 59.313 45.455 0.00 0.00 35.39 6.13
26 27 5.110137 TTGTCAAAACATATCCATGCGGGA 61.110 41.667 0.00 0.00 42.35 5.14
36 37 1.068588 TCCATGCGGGATCTAGTTTCG 59.931 52.381 0.00 0.00 42.15 3.46
37 38 1.068588 CCATGCGGGATCTAGTTTCGA 59.931 52.381 0.00 0.00 40.01 3.71
39 40 2.579207 TGCGGGATCTAGTTTCGAAG 57.421 50.000 0.00 0.00 0.00 3.79
40 41 2.097036 TGCGGGATCTAGTTTCGAAGA 58.903 47.619 0.00 0.00 0.00 2.87
42 43 2.733517 CGGGATCTAGTTTCGAAGAGC 58.266 52.381 0.00 0.00 38.43 4.09
45 46 3.119101 GGGATCTAGTTTCGAAGAGCACA 60.119 47.826 0.00 0.00 38.43 4.57
46 47 4.442192 GGGATCTAGTTTCGAAGAGCACAT 60.442 45.833 0.00 0.00 38.43 3.21
48 49 3.759418 TCTAGTTTCGAAGAGCACATCG 58.241 45.455 2.25 2.25 38.43 3.84
49 50 1.071605 AGTTTCGAAGAGCACATCGC 58.928 50.000 3.84 0.00 38.43 4.58
59 60 2.383170 GCACATCGCGAGGATTTCA 58.617 52.632 29.22 0.00 31.28 2.69
60 61 0.302890 GCACATCGCGAGGATTTCAG 59.697 55.000 29.22 10.26 31.28 3.02
61 62 1.645034 CACATCGCGAGGATTTCAGT 58.355 50.000 29.22 0.00 31.28 3.41
62 63 1.325640 CACATCGCGAGGATTTCAGTG 59.674 52.381 29.22 13.42 31.28 3.66
63 64 0.933097 CATCGCGAGGATTTCAGTGG 59.067 55.000 17.12 0.00 31.28 4.00
64 65 0.537188 ATCGCGAGGATTTCAGTGGT 59.463 50.000 16.66 0.00 28.32 4.16
65 66 0.389817 TCGCGAGGATTTCAGTGGTG 60.390 55.000 3.71 0.00 0.00 4.17
66 67 0.389817 CGCGAGGATTTCAGTGGTGA 60.390 55.000 0.00 0.00 0.00 4.02
73 74 3.790691 TTTCAGTGGTGAAAGCGGA 57.209 47.368 0.00 0.00 45.82 5.54
74 75 2.270352 TTTCAGTGGTGAAAGCGGAT 57.730 45.000 0.00 0.00 45.82 4.18
76 77 0.976641 TCAGTGGTGAAAGCGGATCT 59.023 50.000 0.00 0.00 36.92 2.75
77 78 1.347707 TCAGTGGTGAAAGCGGATCTT 59.652 47.619 0.00 0.00 36.92 2.40
79 80 3.007506 TCAGTGGTGAAAGCGGATCTTAA 59.992 43.478 0.00 0.00 36.92 1.85
80 81 3.941483 CAGTGGTGAAAGCGGATCTTAAT 59.059 43.478 0.00 0.00 36.92 1.40
81 82 4.396166 CAGTGGTGAAAGCGGATCTTAATT 59.604 41.667 0.00 0.00 36.92 1.40
82 83 5.010282 AGTGGTGAAAGCGGATCTTAATTT 58.990 37.500 0.00 0.00 36.92 1.82
84 85 4.094294 TGGTGAAAGCGGATCTTAATTTCG 59.906 41.667 0.00 0.00 36.92 3.46
85 86 4.331717 GGTGAAAGCGGATCTTAATTTCGA 59.668 41.667 0.00 0.00 33.88 3.71
86 87 5.007724 GGTGAAAGCGGATCTTAATTTCGAT 59.992 40.000 0.00 0.00 33.88 3.59
87 88 6.202188 GGTGAAAGCGGATCTTAATTTCGATA 59.798 38.462 0.00 0.00 33.88 2.92
89 90 8.283291 GTGAAAGCGGATCTTAATTTCGATATT 58.717 33.333 6.35 6.35 33.88 1.28
90 91 8.836413 TGAAAGCGGATCTTAATTTCGATATTT 58.164 29.630 6.41 0.00 33.88 1.40
91 92 9.107367 GAAAGCGGATCTTAATTTCGATATTTG 57.893 33.333 6.41 1.62 33.88 2.32
92 93 7.133891 AGCGGATCTTAATTTCGATATTTGG 57.866 36.000 6.41 1.33 0.00 3.28
93 94 6.710744 AGCGGATCTTAATTTCGATATTTGGT 59.289 34.615 6.41 0.00 0.00 3.67
94 95 7.228706 AGCGGATCTTAATTTCGATATTTGGTT 59.771 33.333 6.41 0.00 0.00 3.67
95 96 7.534239 GCGGATCTTAATTTCGATATTTGGTTC 59.466 37.037 6.41 5.23 0.00 3.62
96 97 8.556194 CGGATCTTAATTTCGATATTTGGTTCA 58.444 33.333 6.41 0.00 0.00 3.18
107 108 7.254852 TCGATATTTGGTTCAAAAGTTATGGC 58.745 34.615 0.00 0.00 36.90 4.40
108 109 7.122055 TCGATATTTGGTTCAAAAGTTATGGCT 59.878 33.333 0.00 0.00 36.90 4.75
109 110 7.759433 CGATATTTGGTTCAAAAGTTATGGCTT 59.241 33.333 0.00 0.00 36.90 4.35
111 112 9.791801 ATATTTGGTTCAAAAGTTATGGCTTTT 57.208 25.926 0.00 0.00 46.08 2.27
112 113 7.929941 TTTGGTTCAAAAGTTATGGCTTTTT 57.070 28.000 6.40 0.00 43.66 1.94
154 155 9.628500 AAAAAGTAAACTAGATGGTCAACTTCT 57.372 29.630 0.00 0.00 37.38 2.85
156 157 9.628500 AAAGTAAACTAGATGGTCAACTTCTTT 57.372 29.630 0.00 0.00 35.44 2.52
157 158 9.628500 AAGTAAACTAGATGGTCAACTTCTTTT 57.372 29.630 0.00 0.00 35.44 2.27
161 162 8.608844 AACTAGATGGTCAACTTCTTTTAGTG 57.391 34.615 0.00 0.00 35.44 2.74
162 163 7.736893 ACTAGATGGTCAACTTCTTTTAGTGT 58.263 34.615 0.00 0.00 35.44 3.55
163 164 8.867097 ACTAGATGGTCAACTTCTTTTAGTGTA 58.133 33.333 0.00 0.00 35.44 2.90
168 169 8.301730 TGGTCAACTTCTTTTAGTGTATAACG 57.698 34.615 0.00 0.00 0.00 3.18
169 170 7.385752 TGGTCAACTTCTTTTAGTGTATAACGG 59.614 37.037 0.00 0.00 0.00 4.44
170 171 7.599998 GGTCAACTTCTTTTAGTGTATAACGGA 59.400 37.037 0.00 0.00 0.00 4.69
172 173 7.599998 TCAACTTCTTTTAGTGTATAACGGACC 59.400 37.037 0.00 0.00 0.00 4.46
173 174 6.996509 ACTTCTTTTAGTGTATAACGGACCA 58.003 36.000 0.00 0.00 0.00 4.02
188 189 4.588805 CGGACCACGTATTTACCTTTTC 57.411 45.455 0.00 0.00 37.93 2.29
189 190 3.371898 CGGACCACGTATTTACCTTTTCC 59.628 47.826 0.00 0.00 37.93 3.13
190 191 4.325972 GGACCACGTATTTACCTTTTCCA 58.674 43.478 0.00 0.00 0.00 3.53
191 192 4.154737 GGACCACGTATTTACCTTTTCCAC 59.845 45.833 0.00 0.00 0.00 4.02
192 193 4.074259 ACCACGTATTTACCTTTTCCACC 58.926 43.478 0.00 0.00 0.00 4.61
193 194 3.125658 CCACGTATTTACCTTTTCCACCG 59.874 47.826 0.00 0.00 0.00 4.94
195 196 2.096335 CGTATTTACCTTTTCCACCGGC 59.904 50.000 0.00 0.00 0.00 6.13
198 199 3.905437 TACCTTTTCCACCGGCCGC 62.905 63.158 22.85 0.00 0.00 6.53
209 210 4.394712 CGGCCGCTCCCAAACTCT 62.395 66.667 14.67 0.00 0.00 3.24
210 211 2.987125 GGCCGCTCCCAAACTCTA 59.013 61.111 0.00 0.00 0.00 2.43
211 212 1.449778 GGCCGCTCCCAAACTCTAC 60.450 63.158 0.00 0.00 0.00 2.59
212 213 1.449778 GCCGCTCCCAAACTCTACC 60.450 63.158 0.00 0.00 0.00 3.18
214 215 0.108138 CCGCTCCCAAACTCTACCTG 60.108 60.000 0.00 0.00 0.00 4.00
215 216 0.108138 CGCTCCCAAACTCTACCTGG 60.108 60.000 0.00 0.00 0.00 4.45
216 217 0.393132 GCTCCCAAACTCTACCTGGC 60.393 60.000 0.00 0.00 0.00 4.85
219 220 1.296715 CCAAACTCTACCTGGCGCT 59.703 57.895 7.64 0.00 0.00 5.92
220 221 0.321653 CCAAACTCTACCTGGCGCTT 60.322 55.000 7.64 0.00 0.00 4.68
222 223 0.685097 AAACTCTACCTGGCGCTTGA 59.315 50.000 7.64 0.00 0.00 3.02
223 224 0.247736 AACTCTACCTGGCGCTTGAG 59.752 55.000 7.64 5.80 0.00 3.02
234 235 2.579201 GCTTGAGCGCCCACTAGA 59.421 61.111 2.29 0.00 0.00 2.43
235 236 1.811679 GCTTGAGCGCCCACTAGAC 60.812 63.158 2.29 0.00 0.00 2.59
236 237 1.517257 CTTGAGCGCCCACTAGACG 60.517 63.158 2.29 0.00 0.00 4.18
242 243 3.075005 GCCCACTAGACGCTCCCA 61.075 66.667 0.00 0.00 0.00 4.37
243 244 2.656069 GCCCACTAGACGCTCCCAA 61.656 63.158 0.00 0.00 0.00 4.12
244 245 1.980052 CCCACTAGACGCTCCCAAA 59.020 57.895 0.00 0.00 0.00 3.28
245 246 0.323629 CCCACTAGACGCTCCCAAAA 59.676 55.000 0.00 0.00 0.00 2.44
246 247 1.271163 CCCACTAGACGCTCCCAAAAA 60.271 52.381 0.00 0.00 0.00 1.94
247 248 2.618045 CCCACTAGACGCTCCCAAAAAT 60.618 50.000 0.00 0.00 0.00 1.82
248 249 3.370103 CCCACTAGACGCTCCCAAAAATA 60.370 47.826 0.00 0.00 0.00 1.40
250 251 5.454187 CCCACTAGACGCTCCCAAAAATATA 60.454 44.000 0.00 0.00 0.00 0.86
284 456 4.102838 TCCGATCGGGTTCCCATAAATAAA 59.897 41.667 32.79 5.60 37.00 1.40
285 457 4.454504 CCGATCGGGTTCCCATAAATAAAG 59.545 45.833 26.95 0.00 0.00 1.85
286 458 5.061179 CGATCGGGTTCCCATAAATAAAGT 58.939 41.667 7.38 0.00 0.00 2.66
287 459 5.529800 CGATCGGGTTCCCATAAATAAAGTT 59.470 40.000 7.38 0.00 0.00 2.66
288 460 6.512741 CGATCGGGTTCCCATAAATAAAGTTG 60.513 42.308 7.38 0.00 0.00 3.16
293 465 7.067737 CGGGTTCCCATAAATAAAGTTGTGTAT 59.932 37.037 8.70 0.00 0.00 2.29
297 469 7.777095 TCCCATAAATAAAGTTGTGTATTGGC 58.223 34.615 0.00 0.00 0.00 4.52
298 470 6.983890 CCCATAAATAAAGTTGTGTATTGGCC 59.016 38.462 0.00 0.00 0.00 5.36
301 473 8.908903 CATAAATAAAGTTGTGTATTGGCCCTA 58.091 33.333 0.00 0.00 0.00 3.53
302 474 6.769134 AATAAAGTTGTGTATTGGCCCTAC 57.231 37.500 0.00 2.59 0.00 3.18
303 475 3.799432 AAGTTGTGTATTGGCCCTACA 57.201 42.857 10.41 10.41 0.00 2.74
304 476 3.799432 AGTTGTGTATTGGCCCTACAA 57.201 42.857 14.87 9.33 31.27 2.41
305 477 3.418047 AGTTGTGTATTGGCCCTACAAC 58.582 45.455 20.71 20.71 46.88 3.32
306 478 3.418047 GTTGTGTATTGGCCCTACAACT 58.582 45.455 20.86 0.00 44.53 3.16
307 479 3.799432 TGTGTATTGGCCCTACAACTT 57.201 42.857 14.87 0.00 32.39 2.66
308 480 3.681593 TGTGTATTGGCCCTACAACTTC 58.318 45.455 14.87 5.70 32.39 3.01
309 481 3.073209 TGTGTATTGGCCCTACAACTTCA 59.927 43.478 14.87 7.78 32.39 3.02
310 482 4.076394 GTGTATTGGCCCTACAACTTCAA 58.924 43.478 14.87 0.00 32.39 2.69
311 483 4.521256 GTGTATTGGCCCTACAACTTCAAA 59.479 41.667 14.87 0.00 32.39 2.69
312 484 5.185056 GTGTATTGGCCCTACAACTTCAAAT 59.815 40.000 14.87 0.11 32.39 2.32
313 485 6.376018 GTGTATTGGCCCTACAACTTCAAATA 59.624 38.462 14.87 0.00 32.39 1.40
314 486 7.068226 GTGTATTGGCCCTACAACTTCAAATAT 59.932 37.037 14.87 0.00 32.39 1.28
315 487 8.275758 TGTATTGGCCCTACAACTTCAAATATA 58.724 33.333 11.73 0.00 32.39 0.86
316 488 9.127277 GTATTGGCCCTACAACTTCAAATATAA 57.873 33.333 0.00 0.00 32.39 0.98
317 489 8.602472 ATTGGCCCTACAACTTCAAATATAAA 57.398 30.769 0.00 0.00 32.39 1.40
318 490 7.399245 TGGCCCTACAACTTCAAATATAAAC 57.601 36.000 0.00 0.00 0.00 2.01
319 491 6.948886 TGGCCCTACAACTTCAAATATAAACA 59.051 34.615 0.00 0.00 0.00 2.83
320 492 7.094118 TGGCCCTACAACTTCAAATATAAACAC 60.094 37.037 0.00 0.00 0.00 3.32
321 493 7.255569 GCCCTACAACTTCAAATATAAACACC 58.744 38.462 0.00 0.00 0.00 4.16
322 494 7.469260 CCCTACAACTTCAAATATAAACACCG 58.531 38.462 0.00 0.00 0.00 4.94
323 495 7.120138 CCCTACAACTTCAAATATAAACACCGT 59.880 37.037 0.00 0.00 0.00 4.83
324 496 7.960738 CCTACAACTTCAAATATAAACACCGTG 59.039 37.037 0.00 0.00 0.00 4.94
325 497 6.146898 ACAACTTCAAATATAAACACCGTGC 58.853 36.000 0.00 0.00 0.00 5.34
326 498 5.950758 ACTTCAAATATAAACACCGTGCA 57.049 34.783 0.00 0.00 0.00 4.57
327 499 6.509418 ACTTCAAATATAAACACCGTGCAT 57.491 33.333 0.00 0.00 0.00 3.96
328 500 7.618502 ACTTCAAATATAAACACCGTGCATA 57.381 32.000 0.00 0.00 0.00 3.14
329 501 8.220755 ACTTCAAATATAAACACCGTGCATAT 57.779 30.769 0.00 0.54 0.00 1.78
330 502 9.332502 ACTTCAAATATAAACACCGTGCATATA 57.667 29.630 0.00 2.78 0.00 0.86
333 505 9.549078 TCAAATATAAACACCGTGCATATAAGA 57.451 29.630 0.00 1.04 0.00 2.10
338 510 6.751514 AAACACCGTGCATATAAGAATTCA 57.248 33.333 8.44 0.00 0.00 2.57
339 511 6.751514 AACACCGTGCATATAAGAATTCAA 57.248 33.333 8.44 0.00 0.00 2.69
340 512 6.751514 ACACCGTGCATATAAGAATTCAAA 57.248 33.333 8.44 0.00 0.00 2.69
341 513 7.151999 ACACCGTGCATATAAGAATTCAAAA 57.848 32.000 8.44 0.00 0.00 2.44
342 514 7.598278 ACACCGTGCATATAAGAATTCAAAAA 58.402 30.769 8.44 0.00 0.00 1.94
422 597 0.464373 TACGTCCCCTACTAGCACCG 60.464 60.000 0.00 0.00 0.00 4.94
536 711 3.764466 CCTTCCGCTCCGTCTGCT 61.764 66.667 0.00 0.00 0.00 4.24
793 1137 0.179100 CGAGATCACGCATCTGGGTT 60.179 55.000 0.00 0.00 42.48 4.11
902 1255 1.834263 GATGACTGCCTTAGACCCTGT 59.166 52.381 0.00 0.00 0.00 4.00
903 1256 1.729586 TGACTGCCTTAGACCCTGTT 58.270 50.000 0.00 0.00 0.00 3.16
904 1257 2.897350 TGACTGCCTTAGACCCTGTTA 58.103 47.619 0.00 0.00 0.00 2.41
1024 1377 3.206150 GTGATCATGGCGTATCACCTTT 58.794 45.455 12.17 0.00 44.01 3.11
1171 1524 1.367471 GCCTTGGACAACAAAGGCC 59.633 57.895 15.18 0.00 42.52 5.19
1200 1553 0.317160 TGTTCGATGCCGAGACACTT 59.683 50.000 0.00 0.00 46.39 3.16
1203 1556 0.817654 TCGATGCCGAGACACTTGAT 59.182 50.000 0.00 0.00 40.30 2.57
1393 1746 1.771565 TGAGTTATCGTCCGGGTCAT 58.228 50.000 0.00 0.00 0.00 3.06
1394 1747 2.104967 TGAGTTATCGTCCGGGTCATT 58.895 47.619 0.00 0.00 0.00 2.57
1539 1892 7.822334 ACACGGATTTACTACTTTCATGATGAA 59.178 33.333 3.29 3.29 34.03 2.57
1663 2031 2.091555 AGTTGGTTTGTCCCCAGCTAAA 60.092 45.455 0.00 0.00 41.16 1.85
1683 2051 4.928661 AAGATAGCTAGTTTGTTGTGCG 57.071 40.909 0.00 0.00 0.00 5.34
1707 2075 4.473444 AGAAAAGATCCTTTGAAGCCACA 58.527 39.130 0.00 0.00 0.00 4.17
1708 2076 4.279420 AGAAAAGATCCTTTGAAGCCACAC 59.721 41.667 0.00 0.00 0.00 3.82
1709 2077 1.813513 AGATCCTTTGAAGCCACACG 58.186 50.000 0.00 0.00 0.00 4.49
1710 2078 0.169009 GATCCTTTGAAGCCACACGC 59.831 55.000 0.00 0.00 37.98 5.34
1722 2090 2.912366 GCCACACGCTTTAGTTGTTAC 58.088 47.619 0.00 0.00 0.00 2.50
1724 2092 3.363673 GCCACACGCTTTAGTTGTTACTC 60.364 47.826 0.00 0.00 35.78 2.59
1725 2093 3.185797 CCACACGCTTTAGTTGTTACTCC 59.814 47.826 0.00 0.00 35.78 3.85
1728 2096 3.185797 CACGCTTTAGTTGTTACTCCCAC 59.814 47.826 0.00 0.00 35.78 4.61
1766 2139 3.196939 ACGTAGTTTGTAAGTGGGCAA 57.803 42.857 0.00 0.00 37.78 4.52
1802 2175 4.279671 TGTTCTCTTGACTTGAGGTCTCTC 59.720 45.833 0.00 0.00 44.74 3.20
1831 2204 7.723616 TGTTTTCCTTTATCCACTGATGAGAAA 59.276 33.333 0.00 0.00 32.18 2.52
1837 2211 8.338259 CCTTTATCCACTGATGAGAAAATTACG 58.662 37.037 0.00 0.00 32.18 3.18
1839 2213 4.574892 TCCACTGATGAGAAAATTACGCA 58.425 39.130 0.00 0.00 0.00 5.24
1846 2220 7.795431 TGATGAGAAAATTACGCATCAAAAC 57.205 32.000 20.48 4.77 45.78 2.43
1878 2252 8.882415 ATACATGTACGTTATTGTTAGAAGGG 57.118 34.615 7.96 0.00 0.00 3.95
1879 2253 6.938507 ACATGTACGTTATTGTTAGAAGGGA 58.061 36.000 0.00 0.00 0.00 4.20
1880 2254 7.039882 ACATGTACGTTATTGTTAGAAGGGAG 58.960 38.462 0.00 0.00 0.00 4.30
1881 2255 6.839124 TGTACGTTATTGTTAGAAGGGAGA 57.161 37.500 0.00 0.00 0.00 3.71
1882 2256 6.860080 TGTACGTTATTGTTAGAAGGGAGAG 58.140 40.000 0.00 0.00 0.00 3.20
1883 2257 6.660521 TGTACGTTATTGTTAGAAGGGAGAGA 59.339 38.462 0.00 0.00 0.00 3.10
1884 2258 6.210287 ACGTTATTGTTAGAAGGGAGAGAG 57.790 41.667 0.00 0.00 0.00 3.20
1885 2259 5.950549 ACGTTATTGTTAGAAGGGAGAGAGA 59.049 40.000 0.00 0.00 0.00 3.10
1886 2260 6.095720 ACGTTATTGTTAGAAGGGAGAGAGAG 59.904 42.308 0.00 0.00 0.00 3.20
1887 2261 6.460399 CGTTATTGTTAGAAGGGAGAGAGAGG 60.460 46.154 0.00 0.00 0.00 3.69
1888 2262 4.405756 TTGTTAGAAGGGAGAGAGAGGT 57.594 45.455 0.00 0.00 0.00 3.85
1889 2263 4.405756 TGTTAGAAGGGAGAGAGAGGTT 57.594 45.455 0.00 0.00 0.00 3.50
1890 2264 4.753186 TGTTAGAAGGGAGAGAGAGGTTT 58.247 43.478 0.00 0.00 0.00 3.27
1891 2265 4.528596 TGTTAGAAGGGAGAGAGAGGTTTG 59.471 45.833 0.00 0.00 0.00 2.93
1892 2266 2.545810 AGAAGGGAGAGAGAGGTTTGG 58.454 52.381 0.00 0.00 0.00 3.28
1893 2267 2.158081 AGAAGGGAGAGAGAGGTTTGGT 60.158 50.000 0.00 0.00 0.00 3.67
1894 2268 1.650528 AGGGAGAGAGAGGTTTGGTG 58.349 55.000 0.00 0.00 0.00 4.17
1895 2269 0.615850 GGGAGAGAGAGGTTTGGTGG 59.384 60.000 0.00 0.00 0.00 4.61
1896 2270 1.645710 GGAGAGAGAGGTTTGGTGGA 58.354 55.000 0.00 0.00 0.00 4.02
1897 2271 1.978580 GGAGAGAGAGGTTTGGTGGAA 59.021 52.381 0.00 0.00 0.00 3.53
1898 2272 2.573915 GGAGAGAGAGGTTTGGTGGAAT 59.426 50.000 0.00 0.00 0.00 3.01
1899 2273 3.775316 GGAGAGAGAGGTTTGGTGGAATA 59.225 47.826 0.00 0.00 0.00 1.75
1900 2274 4.141824 GGAGAGAGAGGTTTGGTGGAATAG 60.142 50.000 0.00 0.00 0.00 1.73
1901 2275 4.430441 AGAGAGAGGTTTGGTGGAATAGT 58.570 43.478 0.00 0.00 0.00 2.12
1902 2276 4.468153 AGAGAGAGGTTTGGTGGAATAGTC 59.532 45.833 0.00 0.00 0.00 2.59
1903 2277 3.195825 AGAGAGGTTTGGTGGAATAGTCG 59.804 47.826 0.00 0.00 0.00 4.18
1904 2278 2.904434 AGAGGTTTGGTGGAATAGTCGT 59.096 45.455 0.00 0.00 0.00 4.34
1905 2279 3.326880 AGAGGTTTGGTGGAATAGTCGTT 59.673 43.478 0.00 0.00 0.00 3.85
1906 2280 3.408634 AGGTTTGGTGGAATAGTCGTTG 58.591 45.455 0.00 0.00 0.00 4.10
1907 2281 3.143728 GGTTTGGTGGAATAGTCGTTGT 58.856 45.455 0.00 0.00 0.00 3.32
1908 2282 4.040706 AGGTTTGGTGGAATAGTCGTTGTA 59.959 41.667 0.00 0.00 0.00 2.41
1909 2283 4.939439 GGTTTGGTGGAATAGTCGTTGTAT 59.061 41.667 0.00 0.00 0.00 2.29
1910 2284 5.413523 GGTTTGGTGGAATAGTCGTTGTATT 59.586 40.000 0.00 0.00 0.00 1.89
1911 2285 6.311723 GTTTGGTGGAATAGTCGTTGTATTG 58.688 40.000 0.00 0.00 0.00 1.90
1912 2286 3.936453 TGGTGGAATAGTCGTTGTATTGC 59.064 43.478 0.00 0.00 0.00 3.56
1913 2287 4.189231 GGTGGAATAGTCGTTGTATTGCT 58.811 43.478 0.00 0.00 31.43 3.91
1914 2288 4.634443 GGTGGAATAGTCGTTGTATTGCTT 59.366 41.667 0.00 0.00 31.43 3.91
1915 2289 5.447279 GGTGGAATAGTCGTTGTATTGCTTG 60.447 44.000 0.00 0.00 31.43 4.01
1916 2290 5.350365 GTGGAATAGTCGTTGTATTGCTTGA 59.650 40.000 0.00 0.00 31.43 3.02
1917 2291 5.580691 TGGAATAGTCGTTGTATTGCTTGAG 59.419 40.000 0.00 0.00 31.43 3.02
1918 2292 5.470845 AATAGTCGTTGTATTGCTTGAGC 57.529 39.130 0.00 0.00 42.50 4.26
1919 2293 2.076863 AGTCGTTGTATTGCTTGAGCC 58.923 47.619 0.00 0.00 41.18 4.70
1920 2294 2.076863 GTCGTTGTATTGCTTGAGCCT 58.923 47.619 0.00 0.00 41.18 4.58
1921 2295 2.094417 GTCGTTGTATTGCTTGAGCCTC 59.906 50.000 0.00 0.00 41.18 4.70
1922 2296 1.061131 CGTTGTATTGCTTGAGCCTCG 59.939 52.381 0.00 0.00 41.18 4.63
1923 2297 2.076863 GTTGTATTGCTTGAGCCTCGT 58.923 47.619 0.00 0.00 41.18 4.18
1924 2298 1.725641 TGTATTGCTTGAGCCTCGTG 58.274 50.000 0.00 0.00 41.18 4.35
1925 2299 1.009829 GTATTGCTTGAGCCTCGTGG 58.990 55.000 0.00 0.00 41.18 4.94
1926 2300 0.107703 TATTGCTTGAGCCTCGTGGG 60.108 55.000 5.54 0.00 41.18 4.61
1928 2302 1.476845 TTGCTTGAGCCTCGTGGGTA 61.477 55.000 8.42 0.00 45.24 3.69
1929 2303 1.264749 TGCTTGAGCCTCGTGGGTAT 61.265 55.000 8.42 0.00 45.24 2.73
1930 2304 0.750850 GCTTGAGCCTCGTGGGTATA 59.249 55.000 8.42 0.00 45.24 1.47
1931 2305 1.344763 GCTTGAGCCTCGTGGGTATAT 59.655 52.381 8.42 0.00 45.24 0.86
1932 2306 2.561419 GCTTGAGCCTCGTGGGTATATA 59.439 50.000 8.42 0.00 45.24 0.86
1933 2307 3.195825 GCTTGAGCCTCGTGGGTATATAT 59.804 47.826 8.42 0.00 45.24 0.86
1934 2308 4.401519 GCTTGAGCCTCGTGGGTATATATA 59.598 45.833 8.42 0.00 45.24 0.86
1935 2309 5.069251 GCTTGAGCCTCGTGGGTATATATAT 59.931 44.000 8.42 0.00 45.24 0.86
1936 2310 6.264744 GCTTGAGCCTCGTGGGTATATATATA 59.735 42.308 8.42 0.00 45.24 0.86
1937 2311 7.522399 GCTTGAGCCTCGTGGGTATATATATAG 60.522 44.444 8.42 0.00 45.24 1.31
1938 2312 6.304624 TGAGCCTCGTGGGTATATATATAGG 58.695 44.000 8.42 2.39 45.24 2.57
1939 2313 6.102174 TGAGCCTCGTGGGTATATATATAGGA 59.898 42.308 8.42 0.00 45.24 2.94
1940 2314 6.544650 AGCCTCGTGGGTATATATATAGGAG 58.455 44.000 6.40 4.74 43.12 3.69
1941 2315 6.102910 AGCCTCGTGGGTATATATATAGGAGT 59.897 42.308 6.40 0.00 43.12 3.85
1942 2316 7.294245 AGCCTCGTGGGTATATATATAGGAGTA 59.706 40.741 6.40 0.00 43.12 2.59
1943 2317 8.108364 GCCTCGTGGGTATATATATAGGAGTAT 58.892 40.741 5.54 0.00 37.43 2.12
1970 2344 8.954950 ATGATCTATTTGGAGTACAAGACAAG 57.045 34.615 0.00 0.00 40.82 3.16
1971 2345 6.818644 TGATCTATTTGGAGTACAAGACAAGC 59.181 38.462 0.00 0.00 40.82 4.01
1972 2346 5.488341 TCTATTTGGAGTACAAGACAAGCC 58.512 41.667 0.00 0.00 40.82 4.35
1973 2347 3.569194 TTTGGAGTACAAGACAAGCCA 57.431 42.857 0.00 0.00 40.82 4.75
1974 2348 2.839486 TGGAGTACAAGACAAGCCAG 57.161 50.000 0.00 0.00 0.00 4.85
1975 2349 2.325484 TGGAGTACAAGACAAGCCAGA 58.675 47.619 0.00 0.00 0.00 3.86
1976 2350 2.703536 TGGAGTACAAGACAAGCCAGAA 59.296 45.455 0.00 0.00 0.00 3.02
1977 2351 3.067833 GGAGTACAAGACAAGCCAGAAC 58.932 50.000 0.00 0.00 0.00 3.01
1978 2352 3.494398 GGAGTACAAGACAAGCCAGAACA 60.494 47.826 0.00 0.00 0.00 3.18
1979 2353 4.127171 GAGTACAAGACAAGCCAGAACAA 58.873 43.478 0.00 0.00 0.00 2.83
1980 2354 4.523083 AGTACAAGACAAGCCAGAACAAA 58.477 39.130 0.00 0.00 0.00 2.83
1981 2355 5.133221 AGTACAAGACAAGCCAGAACAAAT 58.867 37.500 0.00 0.00 0.00 2.32
1982 2356 4.574599 ACAAGACAAGCCAGAACAAATC 57.425 40.909 0.00 0.00 0.00 2.17
1983 2357 3.319122 ACAAGACAAGCCAGAACAAATCC 59.681 43.478 0.00 0.00 0.00 3.01
1984 2358 3.515602 AGACAAGCCAGAACAAATCCT 57.484 42.857 0.00 0.00 0.00 3.24
1985 2359 4.640771 AGACAAGCCAGAACAAATCCTA 57.359 40.909 0.00 0.00 0.00 2.94
1986 2360 4.583871 AGACAAGCCAGAACAAATCCTAG 58.416 43.478 0.00 0.00 0.00 3.02
1987 2361 4.042187 AGACAAGCCAGAACAAATCCTAGT 59.958 41.667 0.00 0.00 0.00 2.57
1988 2362 4.327680 ACAAGCCAGAACAAATCCTAGTC 58.672 43.478 0.00 0.00 0.00 2.59
1989 2363 4.042187 ACAAGCCAGAACAAATCCTAGTCT 59.958 41.667 0.00 0.00 0.00 3.24
1990 2364 5.248477 ACAAGCCAGAACAAATCCTAGTCTA 59.752 40.000 0.00 0.00 0.00 2.59
1991 2365 6.069963 ACAAGCCAGAACAAATCCTAGTCTAT 60.070 38.462 0.00 0.00 0.00 1.98
1992 2366 6.168270 AGCCAGAACAAATCCTAGTCTATC 57.832 41.667 0.00 0.00 0.00 2.08
1993 2367 5.902431 AGCCAGAACAAATCCTAGTCTATCT 59.098 40.000 0.00 0.00 0.00 1.98
1994 2368 6.041523 AGCCAGAACAAATCCTAGTCTATCTC 59.958 42.308 0.00 0.00 0.00 2.75
1995 2369 6.041523 GCCAGAACAAATCCTAGTCTATCTCT 59.958 42.308 0.00 0.00 0.00 3.10
1996 2370 7.418483 GCCAGAACAAATCCTAGTCTATCTCTT 60.418 40.741 0.00 0.00 0.00 2.85
1997 2371 8.141268 CCAGAACAAATCCTAGTCTATCTCTTC 58.859 40.741 0.00 0.00 0.00 2.87
1998 2372 8.912988 CAGAACAAATCCTAGTCTATCTCTTCT 58.087 37.037 0.00 0.00 0.00 2.85
1999 2373 9.487442 AGAACAAATCCTAGTCTATCTCTTCTT 57.513 33.333 0.00 0.00 0.00 2.52
2002 2376 8.700973 ACAAATCCTAGTCTATCTCTTCTTTCC 58.299 37.037 0.00 0.00 0.00 3.13
2003 2377 8.923270 CAAATCCTAGTCTATCTCTTCTTTCCT 58.077 37.037 0.00 0.00 0.00 3.36
2044 2418 4.619227 CCCCGCAGTCACAACGGT 62.619 66.667 7.64 0.00 45.49 4.83
2045 2419 2.340809 CCCGCAGTCACAACGGTA 59.659 61.111 7.64 0.00 45.49 4.02
2046 2420 1.736645 CCCGCAGTCACAACGGTAG 60.737 63.158 7.64 0.00 45.49 3.18
2047 2421 2.380410 CCGCAGTCACAACGGTAGC 61.380 63.158 0.43 0.00 42.01 3.58
2048 2422 2.716828 CGCAGTCACAACGGTAGCG 61.717 63.158 13.69 13.69 37.68 4.26
2049 2423 1.372499 GCAGTCACAACGGTAGCGA 60.372 57.895 22.88 0.00 0.00 4.93
2050 2424 0.736325 GCAGTCACAACGGTAGCGAT 60.736 55.000 22.88 6.23 0.00 4.58
2051 2425 0.992072 CAGTCACAACGGTAGCGATG 59.008 55.000 22.88 21.82 0.00 3.84
2052 2426 0.736325 AGTCACAACGGTAGCGATGC 60.736 55.000 22.88 6.94 0.00 3.91
2053 2427 1.011968 GTCACAACGGTAGCGATGCA 61.012 55.000 22.88 7.03 0.00 3.96
2054 2428 0.735978 TCACAACGGTAGCGATGCAG 60.736 55.000 22.88 15.24 0.00 4.41
2055 2429 0.735978 CACAACGGTAGCGATGCAGA 60.736 55.000 22.88 0.00 0.00 4.26
2056 2430 0.736325 ACAACGGTAGCGATGCAGAC 60.736 55.000 22.88 0.00 0.00 3.51
2057 2431 1.516386 AACGGTAGCGATGCAGACG 60.516 57.895 22.88 10.94 0.00 4.18
2058 2432 2.655364 CGGTAGCGATGCAGACGG 60.655 66.667 9.07 0.00 0.00 4.79
2059 2433 2.494918 GGTAGCGATGCAGACGGT 59.505 61.111 20.57 20.57 43.55 4.83
2060 2434 1.878522 GGTAGCGATGCAGACGGTG 60.879 63.158 23.80 0.00 41.38 4.94
2061 2435 1.138883 GTAGCGATGCAGACGGTGA 59.861 57.895 23.80 10.41 41.38 4.02
2062 2436 0.867753 GTAGCGATGCAGACGGTGAG 60.868 60.000 23.80 0.00 41.38 3.51
2063 2437 1.029947 TAGCGATGCAGACGGTGAGA 61.030 55.000 23.80 7.74 41.38 3.27
2064 2438 2.161486 GCGATGCAGACGGTGAGAC 61.161 63.158 15.72 0.00 0.00 3.36
2065 2439 1.508545 CGATGCAGACGGTGAGACT 59.491 57.895 7.98 0.00 0.00 3.24
2066 2440 0.799917 CGATGCAGACGGTGAGACTG 60.800 60.000 7.98 0.00 43.73 3.51
2067 2441 0.459237 GATGCAGACGGTGAGACTGG 60.459 60.000 0.00 0.00 41.73 4.00
2068 2442 0.900182 ATGCAGACGGTGAGACTGGA 60.900 55.000 0.00 0.00 45.05 3.86
2069 2443 1.214062 GCAGACGGTGAGACTGGAG 59.786 63.158 0.00 0.00 41.73 3.86
2070 2444 1.244697 GCAGACGGTGAGACTGGAGA 61.245 60.000 0.00 0.00 41.73 3.71
2071 2445 1.248486 CAGACGGTGAGACTGGAGAA 58.752 55.000 0.00 0.00 38.63 2.87
2072 2446 1.201181 CAGACGGTGAGACTGGAGAAG 59.799 57.143 0.00 0.00 38.63 2.85
2073 2447 1.074084 AGACGGTGAGACTGGAGAAGA 59.926 52.381 0.00 0.00 0.00 2.87
2074 2448 1.887198 GACGGTGAGACTGGAGAAGAA 59.113 52.381 0.00 0.00 0.00 2.52
2075 2449 2.494073 GACGGTGAGACTGGAGAAGAAT 59.506 50.000 0.00 0.00 0.00 2.40
2076 2450 2.494073 ACGGTGAGACTGGAGAAGAATC 59.506 50.000 0.00 0.00 0.00 2.52
2425 2799 2.045926 GCCAAGAGCGTGGGTGAT 60.046 61.111 4.67 0.00 39.26 3.06
2426 2800 2.401766 GCCAAGAGCGTGGGTGATG 61.402 63.158 4.67 0.00 39.26 3.07
2427 2801 1.746615 CCAAGAGCGTGGGTGATGG 60.747 63.158 0.00 0.00 34.77 3.51
2428 2802 1.296392 CAAGAGCGTGGGTGATGGA 59.704 57.895 0.00 0.00 0.00 3.41
2429 2803 0.742281 CAAGAGCGTGGGTGATGGAG 60.742 60.000 0.00 0.00 0.00 3.86
2430 2804 2.512515 GAGCGTGGGTGATGGAGC 60.513 66.667 0.00 0.00 0.00 4.70
2431 2805 4.101448 AGCGTGGGTGATGGAGCC 62.101 66.667 0.00 0.00 43.26 4.70
2436 2810 3.010144 GGGTGATGGAGCCATGGT 58.990 61.111 14.67 0.00 42.41 3.55
2437 2811 1.152881 GGGTGATGGAGCCATGGTC 60.153 63.158 14.67 9.55 42.41 4.02
2438 2812 1.524621 GGTGATGGAGCCATGGTCG 60.525 63.158 14.67 0.00 36.70 4.79
2439 2813 1.522092 GTGATGGAGCCATGGTCGA 59.478 57.895 14.67 7.50 36.70 4.20
2440 2814 0.531532 GTGATGGAGCCATGGTCGAG 60.532 60.000 14.67 0.00 36.70 4.04
2441 2815 1.070445 GATGGAGCCATGGTCGAGG 59.930 63.158 14.67 0.00 36.70 4.63
2442 2816 1.690219 GATGGAGCCATGGTCGAGGT 61.690 60.000 14.67 0.00 36.70 3.85
2443 2817 0.398522 ATGGAGCCATGGTCGAGGTA 60.399 55.000 14.67 0.00 35.03 3.08
2444 2818 1.043116 TGGAGCCATGGTCGAGGTAG 61.043 60.000 14.67 0.00 0.00 3.18
2445 2819 1.068250 GAGCCATGGTCGAGGTAGC 59.932 63.158 14.67 0.00 0.00 3.58
2446 2820 2.109181 GCCATGGTCGAGGTAGCC 59.891 66.667 14.67 0.00 0.00 3.93
2447 2821 2.417516 CCATGGTCGAGGTAGCCG 59.582 66.667 2.57 0.00 0.00 5.52
2448 2822 2.423898 CCATGGTCGAGGTAGCCGT 61.424 63.158 2.57 0.00 0.00 5.68
2449 2823 1.226974 CATGGTCGAGGTAGCCGTG 60.227 63.158 0.00 0.00 33.63 4.94
2450 2824 3.077519 ATGGTCGAGGTAGCCGTGC 62.078 63.158 0.00 0.00 0.00 5.34
2451 2825 3.755628 GGTCGAGGTAGCCGTGCA 61.756 66.667 0.00 0.00 0.00 4.57
2452 2826 2.260434 GTCGAGGTAGCCGTGCAA 59.740 61.111 0.00 0.00 0.00 4.08
2453 2827 1.373748 GTCGAGGTAGCCGTGCAAA 60.374 57.895 0.00 0.00 0.00 3.68
2454 2828 0.947180 GTCGAGGTAGCCGTGCAAAA 60.947 55.000 0.00 0.00 0.00 2.44
2455 2829 0.249953 TCGAGGTAGCCGTGCAAAAA 60.250 50.000 0.00 0.00 0.00 1.94
2471 2845 1.243902 AAAAATGCCGTGGTCGATGT 58.756 45.000 0.00 0.00 39.71 3.06
2472 2846 0.802494 AAAATGCCGTGGTCGATGTC 59.198 50.000 0.00 0.00 39.71 3.06
2473 2847 1.358725 AAATGCCGTGGTCGATGTCG 61.359 55.000 0.00 0.00 39.71 4.35
2482 2856 2.045634 TCGATGTCGAGTCGGGGT 60.046 61.111 13.54 0.00 44.22 4.95
2483 2857 1.676635 TCGATGTCGAGTCGGGGTT 60.677 57.895 13.54 0.00 44.22 4.11
2484 2858 1.516386 CGATGTCGAGTCGGGGTTG 60.516 63.158 13.54 0.00 43.02 3.77
2485 2859 1.810030 GATGTCGAGTCGGGGTTGC 60.810 63.158 13.54 0.00 0.00 4.17
2486 2860 3.310860 ATGTCGAGTCGGGGTTGCC 62.311 63.158 13.54 0.00 0.00 4.52
2497 2871 3.998672 GGTTGCCGGTGTCGAGGA 61.999 66.667 1.90 0.00 39.00 3.71
2498 2872 2.029964 GTTGCCGGTGTCGAGGAA 59.970 61.111 1.90 0.00 39.00 3.36
2499 2873 2.027625 GTTGCCGGTGTCGAGGAAG 61.028 63.158 1.90 0.00 39.00 3.46
2500 2874 2.504274 TTGCCGGTGTCGAGGAAGT 61.504 57.895 1.90 0.00 39.00 3.01
2501 2875 2.126031 GCCGGTGTCGAGGAAGTC 60.126 66.667 1.90 0.00 39.00 3.01
2509 2883 3.744719 CGAGGAAGTCGCCGTGGA 61.745 66.667 0.00 0.00 43.03 4.02
2510 2884 2.182030 GAGGAAGTCGCCGTGGAG 59.818 66.667 0.00 0.00 0.00 3.86
2511 2885 3.991536 GAGGAAGTCGCCGTGGAGC 62.992 68.421 0.00 0.00 0.00 4.70
2535 2909 4.379243 CGCAAGGAGGTGCCGAGT 62.379 66.667 0.00 0.00 41.73 4.18
2536 2910 2.032681 GCAAGGAGGTGCCGAGTT 59.967 61.111 0.00 0.00 43.43 3.01
2537 2911 1.295423 GCAAGGAGGTGCCGAGTTA 59.705 57.895 0.00 0.00 43.43 2.24
2538 2912 0.741221 GCAAGGAGGTGCCGAGTTAG 60.741 60.000 0.00 0.00 43.43 2.34
2539 2913 0.608640 CAAGGAGGTGCCGAGTTAGT 59.391 55.000 0.00 0.00 43.43 2.24
2540 2914 0.896226 AAGGAGGTGCCGAGTTAGTC 59.104 55.000 0.00 0.00 43.43 2.59
2541 2915 0.251653 AGGAGGTGCCGAGTTAGTCA 60.252 55.000 0.00 0.00 43.43 3.41
2542 2916 0.824759 GGAGGTGCCGAGTTAGTCAT 59.175 55.000 0.00 0.00 0.00 3.06
2543 2917 1.471676 GGAGGTGCCGAGTTAGTCATG 60.472 57.143 0.00 0.00 0.00 3.07
2544 2918 0.537188 AGGTGCCGAGTTAGTCATGG 59.463 55.000 0.00 0.00 0.00 3.66
2545 2919 0.462047 GGTGCCGAGTTAGTCATGGG 60.462 60.000 0.00 0.00 0.00 4.00
2546 2920 1.090052 GTGCCGAGTTAGTCATGGGC 61.090 60.000 0.00 0.00 40.88 5.36
2547 2921 1.883084 GCCGAGTTAGTCATGGGCG 60.883 63.158 0.00 0.00 0.00 6.13
2548 2922 1.883084 CCGAGTTAGTCATGGGCGC 60.883 63.158 0.00 0.00 0.00 6.53
2549 2923 1.153647 CGAGTTAGTCATGGGCGCA 60.154 57.895 10.83 5.70 0.00 6.09
2550 2924 1.148157 CGAGTTAGTCATGGGCGCAG 61.148 60.000 10.83 1.75 0.00 5.18
2570 2944 2.348665 GGTGACGAGGTAGTGGTGT 58.651 57.895 0.00 0.00 0.00 4.16
2571 2945 0.038526 GGTGACGAGGTAGTGGTGTG 60.039 60.000 0.00 0.00 0.00 3.82
2572 2946 0.666577 GTGACGAGGTAGTGGTGTGC 60.667 60.000 0.00 0.00 0.00 4.57
2573 2947 1.080025 GACGAGGTAGTGGTGTGCC 60.080 63.158 0.00 0.00 0.00 5.01
2574 2948 2.126071 CGAGGTAGTGGTGTGCCG 60.126 66.667 0.00 0.00 37.67 5.69
2575 2949 2.264794 GAGGTAGTGGTGTGCCGG 59.735 66.667 0.00 0.00 37.67 6.13
2576 2950 2.203728 AGGTAGTGGTGTGCCGGA 60.204 61.111 5.05 0.00 37.67 5.14
2577 2951 1.823169 GAGGTAGTGGTGTGCCGGAA 61.823 60.000 5.05 0.00 37.67 4.30
2578 2952 1.375523 GGTAGTGGTGTGCCGGAAG 60.376 63.158 5.05 0.00 37.67 3.46
2592 2966 2.401583 CGGAAGGATGATGGTGTTGA 57.598 50.000 0.00 0.00 0.00 3.18
2593 2967 2.009774 CGGAAGGATGATGGTGTTGAC 58.990 52.381 0.00 0.00 0.00 3.18
2594 2968 2.009774 GGAAGGATGATGGTGTTGACG 58.990 52.381 0.00 0.00 0.00 4.35
2595 2969 2.354704 GGAAGGATGATGGTGTTGACGA 60.355 50.000 0.00 0.00 0.00 4.20
2596 2970 2.386661 AGGATGATGGTGTTGACGAC 57.613 50.000 0.00 0.00 0.00 4.34
2597 2971 0.999406 GGATGATGGTGTTGACGACG 59.001 55.000 0.00 0.00 0.00 5.12
2598 2972 0.370273 GATGATGGTGTTGACGACGC 59.630 55.000 0.00 0.00 38.05 5.19
2599 2973 1.351430 ATGATGGTGTTGACGACGCG 61.351 55.000 3.53 3.53 39.71 6.01
2600 2974 2.019951 GATGGTGTTGACGACGCGT 61.020 57.895 13.85 13.85 45.10 6.01
2612 2986 4.903010 ACGCGTCGTGGCAGGTTT 62.903 61.111 5.58 0.00 39.18 3.27
2613 2987 4.368808 CGCGTCGTGGCAGGTTTG 62.369 66.667 7.12 0.00 0.00 2.93
2622 2996 3.233231 GCAGGTTTGCCAAGCCCA 61.233 61.111 6.71 0.00 44.74 5.36
2623 2997 3.053828 CAGGTTTGCCAAGCCCAG 58.946 61.111 6.71 0.00 37.19 4.45
2624 2998 2.203684 AGGTTTGCCAAGCCCAGG 60.204 61.111 6.71 0.00 37.19 4.45
2625 2999 3.313524 GGTTTGCCAAGCCCAGGG 61.314 66.667 0.00 0.00 34.09 4.45
2626 3000 2.203625 GTTTGCCAAGCCCAGGGA 60.204 61.111 10.89 0.00 0.00 4.20
2627 3001 2.203625 TTTGCCAAGCCCAGGGAC 60.204 61.111 10.89 0.00 0.00 4.46
2628 3002 3.080158 TTTGCCAAGCCCAGGGACA 62.080 57.895 10.89 0.00 0.00 4.02
2629 3003 3.808218 TTGCCAAGCCCAGGGACAC 62.808 63.158 10.89 0.00 0.00 3.67
2630 3004 4.284550 GCCAAGCCCAGGGACACA 62.285 66.667 10.89 0.00 0.00 3.72
2631 3005 2.765969 CCAAGCCCAGGGACACAT 59.234 61.111 10.89 0.00 0.00 3.21
2632 3006 1.379044 CCAAGCCCAGGGACACATC 60.379 63.158 10.89 0.00 0.00 3.06
2633 3007 1.746615 CAAGCCCAGGGACACATCG 60.747 63.158 10.89 0.00 0.00 3.84
2634 3008 2.224159 AAGCCCAGGGACACATCGT 61.224 57.895 10.89 0.00 0.00 3.73
2635 3009 2.436646 GCCCAGGGACACATCGTG 60.437 66.667 10.89 0.00 39.75 4.35
2636 3010 2.268920 CCCAGGGACACATCGTGG 59.731 66.667 0.00 0.00 37.94 4.94
2637 3011 2.290287 CCCAGGGACACATCGTGGA 61.290 63.158 0.00 0.00 41.25 4.02
2638 3012 1.079127 CCAGGGACACATCGTGGAC 60.079 63.158 0.00 0.00 41.25 4.02
2639 3013 1.446099 CAGGGACACATCGTGGACG 60.446 63.158 0.00 0.00 37.94 4.79
2648 3022 2.028484 TCGTGGACGAAGGCACAC 59.972 61.111 0.00 0.00 46.30 3.82
2649 3023 2.279851 CGTGGACGAAGGCACACA 60.280 61.111 0.00 0.00 43.02 3.72
2650 3024 1.667830 CGTGGACGAAGGCACACAT 60.668 57.895 0.00 0.00 43.02 3.21
2651 3025 1.626654 CGTGGACGAAGGCACACATC 61.627 60.000 0.00 0.00 43.02 3.06
2652 3026 0.602638 GTGGACGAAGGCACACATCA 60.603 55.000 0.00 0.00 34.16 3.07
2653 3027 0.320683 TGGACGAAGGCACACATCAG 60.321 55.000 0.00 0.00 0.00 2.90
2654 3028 0.320771 GGACGAAGGCACACATCAGT 60.321 55.000 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.562394 CCGCATGGATATGTTTTGACAAAC 59.438 41.667 0.00 0.00 39.39 2.93
3 4 3.130164 CCCGCATGGATATGTTTTGACAA 59.870 43.478 0.00 0.00 37.49 3.18
4 5 2.687425 CCCGCATGGATATGTTTTGACA 59.313 45.455 0.00 0.00 37.49 3.58
5 6 2.948979 TCCCGCATGGATATGTTTTGAC 59.051 45.455 0.00 0.00 38.61 3.18
19 20 2.693591 TCTTCGAAACTAGATCCCGCAT 59.306 45.455 0.00 0.00 0.00 4.73
23 24 3.119101 TGTGCTCTTCGAAACTAGATCCC 60.119 47.826 0.00 0.00 0.00 3.85
24 25 4.111375 TGTGCTCTTCGAAACTAGATCC 57.889 45.455 0.00 0.00 0.00 3.36
25 26 4.439449 CGATGTGCTCTTCGAAACTAGATC 59.561 45.833 16.38 0.00 41.60 2.75
26 27 4.355437 CGATGTGCTCTTCGAAACTAGAT 58.645 43.478 16.38 0.00 41.60 1.98
27 28 3.759418 CGATGTGCTCTTCGAAACTAGA 58.241 45.455 16.38 0.00 41.60 2.43
29 30 2.259618 GCGATGTGCTCTTCGAAACTA 58.740 47.619 23.17 0.00 41.60 2.24
30 31 1.071605 GCGATGTGCTCTTCGAAACT 58.928 50.000 23.17 0.00 41.60 2.66
31 32 0.246912 CGCGATGTGCTCTTCGAAAC 60.247 55.000 23.17 8.54 41.60 2.78
32 33 0.388006 TCGCGATGTGCTCTTCGAAA 60.388 50.000 23.17 10.27 41.60 3.46
33 34 0.798389 CTCGCGATGTGCTCTTCGAA 60.798 55.000 23.17 11.82 41.60 3.71
36 37 0.249238 ATCCTCGCGATGTGCTCTTC 60.249 55.000 10.36 0.00 43.27 2.87
37 38 0.176680 AATCCTCGCGATGTGCTCTT 59.823 50.000 10.36 0.00 43.27 2.85
39 40 0.579156 GAAATCCTCGCGATGTGCTC 59.421 55.000 10.36 0.06 43.27 4.26
40 41 0.108186 TGAAATCCTCGCGATGTGCT 60.108 50.000 10.36 0.00 43.27 4.40
42 43 1.325640 CACTGAAATCCTCGCGATGTG 59.674 52.381 10.36 0.99 0.00 3.21
45 46 0.537188 ACCACTGAAATCCTCGCGAT 59.463 50.000 10.36 0.00 0.00 4.58
46 47 0.389817 CACCACTGAAATCCTCGCGA 60.390 55.000 9.26 9.26 0.00 5.87
48 49 1.808411 TTCACCACTGAAATCCTCGC 58.192 50.000 0.00 0.00 33.20 5.03
49 50 2.160417 GCTTTCACCACTGAAATCCTCG 59.840 50.000 0.00 0.00 43.89 4.63
50 51 2.160417 CGCTTTCACCACTGAAATCCTC 59.840 50.000 0.00 0.00 43.89 3.71
51 52 2.154462 CGCTTTCACCACTGAAATCCT 58.846 47.619 0.00 0.00 43.89 3.24
52 53 1.200020 CCGCTTTCACCACTGAAATCC 59.800 52.381 0.00 0.00 43.89 3.01
53 54 2.151202 TCCGCTTTCACCACTGAAATC 58.849 47.619 0.00 0.00 43.89 2.17
54 55 2.270352 TCCGCTTTCACCACTGAAAT 57.730 45.000 0.00 0.00 43.89 2.17
55 56 2.151202 GATCCGCTTTCACCACTGAAA 58.849 47.619 0.00 0.00 42.93 2.69
56 57 1.347707 AGATCCGCTTTCACCACTGAA 59.652 47.619 0.00 0.00 34.39 3.02
58 59 1.813513 AAGATCCGCTTTCACCACTG 58.186 50.000 0.00 0.00 31.11 3.66
59 60 3.695830 TTAAGATCCGCTTTCACCACT 57.304 42.857 0.00 0.00 38.05 4.00
60 61 4.965119 AATTAAGATCCGCTTTCACCAC 57.035 40.909 0.00 0.00 38.05 4.16
61 62 4.094294 CGAAATTAAGATCCGCTTTCACCA 59.906 41.667 0.00 0.00 38.05 4.17
62 63 4.331717 TCGAAATTAAGATCCGCTTTCACC 59.668 41.667 0.00 0.00 38.05 4.02
63 64 5.464965 TCGAAATTAAGATCCGCTTTCAC 57.535 39.130 0.00 0.00 38.05 3.18
64 65 7.962964 ATATCGAAATTAAGATCCGCTTTCA 57.037 32.000 0.00 0.00 38.05 2.69
65 66 9.107367 CAAATATCGAAATTAAGATCCGCTTTC 57.893 33.333 0.00 0.00 38.05 2.62
66 67 8.076178 CCAAATATCGAAATTAAGATCCGCTTT 58.924 33.333 0.00 0.00 38.05 3.51
68 69 6.710744 ACCAAATATCGAAATTAAGATCCGCT 59.289 34.615 0.00 0.00 0.00 5.52
70 71 8.556194 TGAACCAAATATCGAAATTAAGATCCG 58.444 33.333 0.00 0.00 0.00 4.18
80 81 9.632807 CCATAACTTTTGAACCAAATATCGAAA 57.367 29.630 0.00 0.00 33.19 3.46
81 82 7.757624 GCCATAACTTTTGAACCAAATATCGAA 59.242 33.333 0.00 0.00 33.19 3.71
82 83 7.122055 AGCCATAACTTTTGAACCAAATATCGA 59.878 33.333 0.00 0.00 33.19 3.59
84 85 9.435688 AAAGCCATAACTTTTGAACCAAATATC 57.564 29.630 0.00 0.00 36.47 1.63
85 86 9.791801 AAAAGCCATAACTTTTGAACCAAATAT 57.208 25.926 1.69 0.00 45.68 1.28
86 87 9.620259 AAAAAGCCATAACTTTTGAACCAAATA 57.380 25.926 3.25 0.00 46.49 1.40
87 88 8.518430 AAAAAGCCATAACTTTTGAACCAAAT 57.482 26.923 3.25 0.00 46.49 2.32
128 129 9.628500 AGAAGTTGACCATCTAGTTTACTTTTT 57.372 29.630 0.00 0.00 0.00 1.94
129 130 9.628500 AAGAAGTTGACCATCTAGTTTACTTTT 57.372 29.630 0.00 0.00 0.00 2.27
131 132 9.628500 AAAAGAAGTTGACCATCTAGTTTACTT 57.372 29.630 0.00 0.00 0.00 2.24
135 136 9.057089 CACTAAAAGAAGTTGACCATCTAGTTT 57.943 33.333 0.00 0.00 0.00 2.66
136 137 8.211629 ACACTAAAAGAAGTTGACCATCTAGTT 58.788 33.333 0.00 0.00 0.00 2.24
137 138 7.736893 ACACTAAAAGAAGTTGACCATCTAGT 58.263 34.615 0.00 0.00 0.00 2.57
142 143 8.932791 CGTTATACACTAAAAGAAGTTGACCAT 58.067 33.333 0.00 0.00 0.00 3.55
143 144 7.385752 CCGTTATACACTAAAAGAAGTTGACCA 59.614 37.037 0.00 0.00 0.00 4.02
144 145 7.599998 TCCGTTATACACTAAAAGAAGTTGACC 59.400 37.037 0.00 0.00 0.00 4.02
149 150 6.870439 GTGGTCCGTTATACACTAAAAGAAGT 59.130 38.462 0.00 0.00 0.00 3.01
150 151 6.034256 CGTGGTCCGTTATACACTAAAAGAAG 59.966 42.308 0.00 0.00 0.00 2.85
151 152 5.863397 CGTGGTCCGTTATACACTAAAAGAA 59.137 40.000 0.00 0.00 0.00 2.52
152 153 5.401550 CGTGGTCCGTTATACACTAAAAGA 58.598 41.667 0.00 0.00 0.00 2.52
153 154 5.691508 CGTGGTCCGTTATACACTAAAAG 57.308 43.478 0.00 0.00 0.00 2.27
167 168 3.371898 GGAAAAGGTAAATACGTGGTCCG 59.628 47.826 0.00 0.00 44.03 4.79
168 169 4.154737 GTGGAAAAGGTAAATACGTGGTCC 59.845 45.833 0.00 7.84 32.65 4.46
169 170 4.154737 GGTGGAAAAGGTAAATACGTGGTC 59.845 45.833 0.00 0.00 0.00 4.02
170 171 4.074259 GGTGGAAAAGGTAAATACGTGGT 58.926 43.478 0.00 0.00 0.00 4.16
172 173 3.125658 CCGGTGGAAAAGGTAAATACGTG 59.874 47.826 0.00 0.00 0.00 4.49
173 174 3.337358 CCGGTGGAAAAGGTAAATACGT 58.663 45.455 0.00 0.00 0.00 3.57
175 176 2.424601 GGCCGGTGGAAAAGGTAAATAC 59.575 50.000 1.90 0.00 0.00 1.89
176 177 2.725637 GGCCGGTGGAAAAGGTAAATA 58.274 47.619 1.90 0.00 0.00 1.40
177 178 1.552578 GGCCGGTGGAAAAGGTAAAT 58.447 50.000 1.90 0.00 0.00 1.40
178 179 0.890090 CGGCCGGTGGAAAAGGTAAA 60.890 55.000 20.10 0.00 0.00 2.01
179 180 1.302671 CGGCCGGTGGAAAAGGTAA 60.303 57.895 20.10 0.00 0.00 2.85
180 181 2.348243 CGGCCGGTGGAAAAGGTA 59.652 61.111 20.10 0.00 0.00 3.08
183 184 3.431725 GAGCGGCCGGTGGAAAAG 61.432 66.667 37.70 0.00 0.00 2.27
192 193 3.014085 TAGAGTTTGGGAGCGGCCG 62.014 63.158 24.05 24.05 37.63 6.13
193 194 1.449778 GTAGAGTTTGGGAGCGGCC 60.450 63.158 0.00 0.00 0.00 6.13
195 196 0.108138 CAGGTAGAGTTTGGGAGCGG 60.108 60.000 0.00 0.00 0.00 5.52
198 199 0.108138 CGCCAGGTAGAGTTTGGGAG 60.108 60.000 0.00 0.00 32.53 4.30
199 200 1.980052 CGCCAGGTAGAGTTTGGGA 59.020 57.895 0.00 0.00 32.53 4.37
201 202 0.321653 AAGCGCCAGGTAGAGTTTGG 60.322 55.000 2.29 0.00 35.06 3.28
203 204 0.685097 TCAAGCGCCAGGTAGAGTTT 59.315 50.000 2.29 0.00 0.00 2.66
204 205 0.247736 CTCAAGCGCCAGGTAGAGTT 59.752 55.000 2.29 0.00 0.00 3.01
205 206 1.893786 CTCAAGCGCCAGGTAGAGT 59.106 57.895 2.29 0.00 0.00 3.24
206 207 1.520342 GCTCAAGCGCCAGGTAGAG 60.520 63.158 2.29 3.84 0.00 2.43
219 220 2.571757 CGTCTAGTGGGCGCTCAA 59.428 61.111 13.97 0.00 0.00 3.02
220 221 4.129737 GCGTCTAGTGGGCGCTCA 62.130 66.667 18.90 5.44 46.55 4.26
225 226 2.180159 TTTGGGAGCGTCTAGTGGGC 62.180 60.000 0.00 0.00 0.00 5.36
227 228 2.178912 TTTTTGGGAGCGTCTAGTGG 57.821 50.000 0.00 0.00 0.00 4.00
229 230 6.481434 AGTATATTTTTGGGAGCGTCTAGT 57.519 37.500 0.00 0.00 0.00 2.57
230 231 7.659186 ACTAGTATATTTTTGGGAGCGTCTAG 58.341 38.462 0.00 0.00 0.00 2.43
232 233 6.481434 ACTAGTATATTTTTGGGAGCGTCT 57.519 37.500 0.00 0.00 0.00 4.18
234 235 7.147776 ACACTACTAGTATATTTTTGGGAGCGT 60.148 37.037 2.33 0.00 0.00 5.07
235 236 7.208080 ACACTACTAGTATATTTTTGGGAGCG 58.792 38.462 2.33 0.00 0.00 5.03
236 237 8.959705 AACACTACTAGTATATTTTTGGGAGC 57.040 34.615 2.33 0.00 0.00 4.70
237 238 9.543783 GGAACACTACTAGTATATTTTTGGGAG 57.456 37.037 2.33 0.00 0.00 4.30
239 240 8.199449 TCGGAACACTACTAGTATATTTTTGGG 58.801 37.037 2.33 0.00 0.00 4.12
240 241 9.760077 ATCGGAACACTACTAGTATATTTTTGG 57.240 33.333 2.33 0.00 0.00 3.28
242 243 9.674824 CGATCGGAACACTACTAGTATATTTTT 57.325 33.333 7.38 0.00 0.00 1.94
243 244 8.295288 CCGATCGGAACACTACTAGTATATTTT 58.705 37.037 30.62 0.00 37.50 1.82
244 245 7.094463 CCCGATCGGAACACTACTAGTATATTT 60.094 40.741 35.42 0.00 37.50 1.40
245 246 6.373774 CCCGATCGGAACACTACTAGTATATT 59.626 42.308 35.42 0.00 37.50 1.28
246 247 5.879223 CCCGATCGGAACACTACTAGTATAT 59.121 44.000 35.42 0.00 37.50 0.86
247 248 5.221722 ACCCGATCGGAACACTACTAGTATA 60.222 44.000 35.42 0.00 37.50 1.47
248 249 4.070716 CCCGATCGGAACACTACTAGTAT 58.929 47.826 35.42 0.00 37.50 2.12
250 251 2.295885 CCCGATCGGAACACTACTAGT 58.704 52.381 35.42 0.00 37.50 2.57
284 456 3.418047 GTTGTAGGGCCAATACACAACT 58.582 45.455 17.17 0.00 43.45 3.16
285 457 3.418047 AGTTGTAGGGCCAATACACAAC 58.582 45.455 17.17 19.12 45.84 3.32
286 458 3.799432 AGTTGTAGGGCCAATACACAA 57.201 42.857 17.17 10.25 33.01 3.33
287 459 3.073209 TGAAGTTGTAGGGCCAATACACA 59.927 43.478 17.17 10.59 33.01 3.72
288 460 3.681593 TGAAGTTGTAGGGCCAATACAC 58.318 45.455 17.17 12.90 33.01 2.90
293 465 7.451877 TGTTTATATTTGAAGTTGTAGGGCCAA 59.548 33.333 6.18 0.00 0.00 4.52
297 469 7.120138 ACGGTGTTTATATTTGAAGTTGTAGGG 59.880 37.037 0.00 0.00 0.00 3.53
298 470 7.960738 CACGGTGTTTATATTTGAAGTTGTAGG 59.039 37.037 0.00 0.00 0.00 3.18
301 473 6.146898 GCACGGTGTTTATATTTGAAGTTGT 58.853 36.000 10.24 0.00 0.00 3.32
302 474 6.146216 TGCACGGTGTTTATATTTGAAGTTG 58.854 36.000 10.24 0.00 0.00 3.16
303 475 6.320494 TGCACGGTGTTTATATTTGAAGTT 57.680 33.333 10.24 0.00 0.00 2.66
304 476 5.950758 TGCACGGTGTTTATATTTGAAGT 57.049 34.783 10.24 0.00 0.00 3.01
307 479 9.549078 TCTTATATGCACGGTGTTTATATTTGA 57.451 29.630 10.24 9.79 0.00 2.69
312 484 9.549078 TGAATTCTTATATGCACGGTGTTTATA 57.451 29.630 10.24 8.62 0.00 0.98
313 485 8.445275 TGAATTCTTATATGCACGGTGTTTAT 57.555 30.769 10.24 9.51 0.00 1.40
314 486 7.851387 TGAATTCTTATATGCACGGTGTTTA 57.149 32.000 10.24 2.56 0.00 2.01
315 487 6.751514 TGAATTCTTATATGCACGGTGTTT 57.248 33.333 10.24 0.23 0.00 2.83
316 488 6.751514 TTGAATTCTTATATGCACGGTGTT 57.248 33.333 10.24 0.60 0.00 3.32
317 489 6.751514 TTTGAATTCTTATATGCACGGTGT 57.248 33.333 10.24 0.00 0.00 4.16
358 530 4.083565 AGGGTTTATATGCACGGTGTTTT 58.916 39.130 10.24 0.00 0.00 2.43
422 597 3.115892 TTGTTCGGCCATCGTCGC 61.116 61.111 2.24 0.00 40.32 5.19
639 815 1.069090 GACCAGCCACGTGACAAGA 59.931 57.895 19.30 0.00 0.00 3.02
731 907 1.322538 GGCGTTGAGATTGGGGCATT 61.323 55.000 0.00 0.00 0.00 3.56
732 908 1.754234 GGCGTTGAGATTGGGGCAT 60.754 57.895 0.00 0.00 0.00 4.40
733 909 2.361104 GGCGTTGAGATTGGGGCA 60.361 61.111 0.00 0.00 0.00 5.36
734 910 3.508840 CGGCGTTGAGATTGGGGC 61.509 66.667 0.00 0.00 0.00 5.80
735 911 2.046314 ACGGCGTTGAGATTGGGG 60.046 61.111 6.77 0.00 0.00 4.96
736 912 2.106683 GGACGGCGTTGAGATTGGG 61.107 63.158 16.19 0.00 0.00 4.12
737 913 2.452813 CGGACGGCGTTGAGATTGG 61.453 63.158 16.19 0.00 0.00 3.16
738 914 1.736645 ACGGACGGCGTTGAGATTG 60.737 57.895 16.19 1.75 0.00 2.67
793 1137 2.827190 ATCGGGAGCGTGCTCGTA 60.827 61.111 15.13 4.12 43.59 3.43
868 1220 3.484886 GCAGTCATCTTGATCTTGAACGC 60.485 47.826 0.00 0.00 0.00 4.84
1024 1377 0.843309 ATCCCCGTATGTCCATGCAA 59.157 50.000 0.00 0.00 0.00 4.08
1092 1445 4.505191 GCGAAGGCTACGTATTGTGAATTA 59.495 41.667 0.00 0.00 35.83 1.40
1171 1524 1.626654 GCATCGAACACCACCGTGAG 61.627 60.000 0.00 0.00 43.14 3.51
1200 1553 1.283905 TCGACCTGGTAGAGGACATCA 59.716 52.381 5.47 0.00 46.33 3.07
1203 1556 0.323178 GGTCGACCTGGTAGAGGACA 60.323 60.000 27.64 0.00 46.33 4.02
1393 1746 1.595929 GCCGTCCGTCACCTTTCAA 60.596 57.895 0.00 0.00 0.00 2.69
1394 1747 2.029964 GCCGTCCGTCACCTTTCA 59.970 61.111 0.00 0.00 0.00 2.69
1524 1877 8.824781 CCAGACTTGTATTCATCATGAAAGTAG 58.175 37.037 3.63 2.84 40.12 2.57
1539 1892 2.590092 GCCGCCCCAGACTTGTAT 59.410 61.111 0.00 0.00 0.00 2.29
1582 1950 0.108615 ATGTACACGCACTCCAGCTC 60.109 55.000 0.00 0.00 0.00 4.09
1663 2031 4.188247 TCGCACAACAAACTAGCTATCT 57.812 40.909 0.00 0.00 0.00 1.98
1683 2051 5.010012 TGTGGCTTCAAAGGATCTTTTCTTC 59.990 40.000 0.00 0.00 0.00 2.87
1707 2075 3.181463 TGTGGGAGTAACAACTAAAGCGT 60.181 43.478 0.00 0.00 0.00 5.07
1708 2076 3.395639 TGTGGGAGTAACAACTAAAGCG 58.604 45.455 0.00 0.00 0.00 4.68
1709 2077 5.959618 ATTGTGGGAGTAACAACTAAAGC 57.040 39.130 0.00 0.00 40.16 3.51
1710 2078 9.840427 CAATTATTGTGGGAGTAACAACTAAAG 57.160 33.333 0.00 0.00 40.16 1.85
1722 2090 7.484641 CGTAATGTTTGACAATTATTGTGGGAG 59.515 37.037 15.83 0.00 45.52 4.30
1724 2092 7.087639 ACGTAATGTTTGACAATTATTGTGGG 58.912 34.615 15.83 0.00 45.52 4.61
1725 2093 9.272901 CTACGTAATGTTTGACAATTATTGTGG 57.727 33.333 15.83 0.00 45.52 4.17
1754 2127 2.156098 GAAACCGATTGCCCACTTACA 58.844 47.619 0.00 0.00 0.00 2.41
1766 2139 5.409826 GTCAAGAGAACAATCAGAAACCGAT 59.590 40.000 0.00 0.00 0.00 4.18
1802 2175 6.430925 TCATCAGTGGATAAAGGAAAACACAG 59.569 38.462 0.00 0.00 30.87 3.66
1837 2211 9.580916 CGTACATGTATACAATAGTTTTGATGC 57.419 33.333 10.14 0.00 0.00 3.91
1859 2233 7.066766 TCTCTCTCCCTTCTAACAATAACGTAC 59.933 40.741 0.00 0.00 0.00 3.67
1868 2242 4.405756 AACCTCTCTCTCCCTTCTAACA 57.594 45.455 0.00 0.00 0.00 2.41
1869 2243 4.081365 CCAAACCTCTCTCTCCCTTCTAAC 60.081 50.000 0.00 0.00 0.00 2.34
1870 2244 4.097418 CCAAACCTCTCTCTCCCTTCTAA 58.903 47.826 0.00 0.00 0.00 2.10
1871 2245 3.077695 ACCAAACCTCTCTCTCCCTTCTA 59.922 47.826 0.00 0.00 0.00 2.10
1872 2246 2.158081 ACCAAACCTCTCTCTCCCTTCT 60.158 50.000 0.00 0.00 0.00 2.85
1873 2247 2.027653 CACCAAACCTCTCTCTCCCTTC 60.028 54.545 0.00 0.00 0.00 3.46
1874 2248 1.981495 CACCAAACCTCTCTCTCCCTT 59.019 52.381 0.00 0.00 0.00 3.95
1875 2249 1.650528 CACCAAACCTCTCTCTCCCT 58.349 55.000 0.00 0.00 0.00 4.20
1876 2250 0.615850 CCACCAAACCTCTCTCTCCC 59.384 60.000 0.00 0.00 0.00 4.30
1877 2251 1.645710 TCCACCAAACCTCTCTCTCC 58.354 55.000 0.00 0.00 0.00 3.71
1878 2252 3.990959 ATTCCACCAAACCTCTCTCTC 57.009 47.619 0.00 0.00 0.00 3.20
1879 2253 4.430441 ACTATTCCACCAAACCTCTCTCT 58.570 43.478 0.00 0.00 0.00 3.10
1880 2254 4.678309 CGACTATTCCACCAAACCTCTCTC 60.678 50.000 0.00 0.00 0.00 3.20
1881 2255 3.195825 CGACTATTCCACCAAACCTCTCT 59.804 47.826 0.00 0.00 0.00 3.10
1882 2256 3.056035 ACGACTATTCCACCAAACCTCTC 60.056 47.826 0.00 0.00 0.00 3.20
1883 2257 2.904434 ACGACTATTCCACCAAACCTCT 59.096 45.455 0.00 0.00 0.00 3.69
1884 2258 3.329929 ACGACTATTCCACCAAACCTC 57.670 47.619 0.00 0.00 0.00 3.85
1885 2259 3.181448 ACAACGACTATTCCACCAAACCT 60.181 43.478 0.00 0.00 0.00 3.50
1886 2260 3.143728 ACAACGACTATTCCACCAAACC 58.856 45.455 0.00 0.00 0.00 3.27
1887 2261 6.311723 CAATACAACGACTATTCCACCAAAC 58.688 40.000 0.00 0.00 0.00 2.93
1888 2262 5.106475 GCAATACAACGACTATTCCACCAAA 60.106 40.000 0.00 0.00 0.00 3.28
1889 2263 4.393680 GCAATACAACGACTATTCCACCAA 59.606 41.667 0.00 0.00 0.00 3.67
1890 2264 3.936453 GCAATACAACGACTATTCCACCA 59.064 43.478 0.00 0.00 0.00 4.17
1891 2265 4.189231 AGCAATACAACGACTATTCCACC 58.811 43.478 0.00 0.00 0.00 4.61
1892 2266 5.350365 TCAAGCAATACAACGACTATTCCAC 59.650 40.000 0.00 0.00 0.00 4.02
1893 2267 5.483811 TCAAGCAATACAACGACTATTCCA 58.516 37.500 0.00 0.00 0.00 3.53
1894 2268 5.502544 GCTCAAGCAATACAACGACTATTCC 60.503 44.000 0.00 0.00 41.59 3.01
1895 2269 5.493735 GCTCAAGCAATACAACGACTATTC 58.506 41.667 0.00 0.00 41.59 1.75
1896 2270 4.332819 GGCTCAAGCAATACAACGACTATT 59.667 41.667 4.13 0.00 44.36 1.73
1897 2271 3.871594 GGCTCAAGCAATACAACGACTAT 59.128 43.478 4.13 0.00 44.36 2.12
1898 2272 3.056107 AGGCTCAAGCAATACAACGACTA 60.056 43.478 4.13 0.00 44.36 2.59
1899 2273 2.076863 GGCTCAAGCAATACAACGACT 58.923 47.619 4.13 0.00 44.36 4.18
1900 2274 2.076863 AGGCTCAAGCAATACAACGAC 58.923 47.619 4.13 0.00 44.36 4.34
1901 2275 2.346803 GAGGCTCAAGCAATACAACGA 58.653 47.619 10.25 0.00 44.36 3.85
1902 2276 1.061131 CGAGGCTCAAGCAATACAACG 59.939 52.381 15.95 0.00 44.36 4.10
1903 2277 2.076863 ACGAGGCTCAAGCAATACAAC 58.923 47.619 15.95 0.00 44.36 3.32
1904 2278 2.076100 CACGAGGCTCAAGCAATACAA 58.924 47.619 15.95 0.00 44.36 2.41
1905 2279 1.675714 CCACGAGGCTCAAGCAATACA 60.676 52.381 15.95 0.00 44.36 2.29
1906 2280 1.009829 CCACGAGGCTCAAGCAATAC 58.990 55.000 15.95 0.00 44.36 1.89
1907 2281 0.107703 CCCACGAGGCTCAAGCAATA 60.108 55.000 15.95 0.00 44.36 1.90
1908 2282 1.377725 CCCACGAGGCTCAAGCAAT 60.378 57.895 15.95 0.00 44.36 3.56
1909 2283 1.476845 TACCCACGAGGCTCAAGCAA 61.477 55.000 15.95 0.00 44.36 3.91
1910 2284 1.264749 ATACCCACGAGGCTCAAGCA 61.265 55.000 15.95 0.00 44.36 3.91
1911 2285 0.750850 TATACCCACGAGGCTCAAGC 59.249 55.000 15.95 0.00 40.58 4.01
1912 2286 6.716934 ATATATATACCCACGAGGCTCAAG 57.283 41.667 15.95 5.75 40.58 3.02
1913 2287 6.776116 CCTATATATATACCCACGAGGCTCAA 59.224 42.308 15.95 0.00 40.58 3.02
1914 2288 6.102174 TCCTATATATATACCCACGAGGCTCA 59.898 42.308 15.95 0.00 40.58 4.26
1915 2289 6.540995 TCCTATATATATACCCACGAGGCTC 58.459 44.000 3.87 3.87 40.58 4.70
1916 2290 6.102910 ACTCCTATATATATACCCACGAGGCT 59.897 42.308 0.00 0.00 40.58 4.58
1917 2291 6.305411 ACTCCTATATATATACCCACGAGGC 58.695 44.000 0.00 0.00 40.58 4.70
1944 2318 9.388506 CTTGTCTTGTACTCCAAATAGATCATT 57.611 33.333 0.00 0.00 31.20 2.57
1945 2319 7.497249 GCTTGTCTTGTACTCCAAATAGATCAT 59.503 37.037 0.00 0.00 31.20 2.45
1946 2320 6.818644 GCTTGTCTTGTACTCCAAATAGATCA 59.181 38.462 0.00 0.00 31.20 2.92
1947 2321 6.258947 GGCTTGTCTTGTACTCCAAATAGATC 59.741 42.308 0.00 0.00 31.20 2.75
1948 2322 6.116126 GGCTTGTCTTGTACTCCAAATAGAT 58.884 40.000 0.00 0.00 31.20 1.98
1949 2323 5.012664 TGGCTTGTCTTGTACTCCAAATAGA 59.987 40.000 0.00 0.00 31.20 1.98
1950 2324 5.245531 TGGCTTGTCTTGTACTCCAAATAG 58.754 41.667 0.00 0.00 31.20 1.73
1951 2325 5.012664 TCTGGCTTGTCTTGTACTCCAAATA 59.987 40.000 0.00 0.00 31.20 1.40
1952 2326 4.074970 CTGGCTTGTCTTGTACTCCAAAT 58.925 43.478 0.00 0.00 31.20 2.32
1953 2327 3.135712 TCTGGCTTGTCTTGTACTCCAAA 59.864 43.478 0.00 0.00 31.20 3.28
1954 2328 2.703536 TCTGGCTTGTCTTGTACTCCAA 59.296 45.455 0.00 0.00 0.00 3.53
1955 2329 2.325484 TCTGGCTTGTCTTGTACTCCA 58.675 47.619 0.00 0.00 0.00 3.86
1956 2330 3.067833 GTTCTGGCTTGTCTTGTACTCC 58.932 50.000 0.00 0.00 0.00 3.85
1957 2331 3.728845 TGTTCTGGCTTGTCTTGTACTC 58.271 45.455 0.00 0.00 0.00 2.59
1958 2332 3.838244 TGTTCTGGCTTGTCTTGTACT 57.162 42.857 0.00 0.00 0.00 2.73
1959 2333 4.893424 TTTGTTCTGGCTTGTCTTGTAC 57.107 40.909 0.00 0.00 0.00 2.90
1960 2334 4.518970 GGATTTGTTCTGGCTTGTCTTGTA 59.481 41.667 0.00 0.00 0.00 2.41
1961 2335 3.319122 GGATTTGTTCTGGCTTGTCTTGT 59.681 43.478 0.00 0.00 0.00 3.16
1962 2336 3.571401 AGGATTTGTTCTGGCTTGTCTTG 59.429 43.478 0.00 0.00 0.00 3.02
1963 2337 3.837355 AGGATTTGTTCTGGCTTGTCTT 58.163 40.909 0.00 0.00 0.00 3.01
1964 2338 3.515602 AGGATTTGTTCTGGCTTGTCT 57.484 42.857 0.00 0.00 0.00 3.41
1965 2339 4.327680 ACTAGGATTTGTTCTGGCTTGTC 58.672 43.478 0.00 0.00 0.00 3.18
1966 2340 4.042187 AGACTAGGATTTGTTCTGGCTTGT 59.958 41.667 0.00 0.00 0.00 3.16
1967 2341 4.583871 AGACTAGGATTTGTTCTGGCTTG 58.416 43.478 0.00 0.00 0.00 4.01
1968 2342 4.917906 AGACTAGGATTTGTTCTGGCTT 57.082 40.909 0.00 0.00 0.00 4.35
1969 2343 5.902431 AGATAGACTAGGATTTGTTCTGGCT 59.098 40.000 0.00 0.00 0.00 4.75
1970 2344 6.041523 AGAGATAGACTAGGATTTGTTCTGGC 59.958 42.308 0.00 0.00 0.00 4.85
1971 2345 7.595819 AGAGATAGACTAGGATTTGTTCTGG 57.404 40.000 0.00 0.00 0.00 3.86
1972 2346 8.912988 AGAAGAGATAGACTAGGATTTGTTCTG 58.087 37.037 0.00 0.00 0.00 3.02
1973 2347 9.487442 AAGAAGAGATAGACTAGGATTTGTTCT 57.513 33.333 0.00 0.00 0.00 3.01
1976 2350 8.700973 GGAAAGAAGAGATAGACTAGGATTTGT 58.299 37.037 0.00 0.00 0.00 2.83
1977 2351 8.923270 AGGAAAGAAGAGATAGACTAGGATTTG 58.077 37.037 0.00 0.00 0.00 2.32
2030 2404 2.716828 CGCTACCGTTGTGACTGCG 61.717 63.158 0.00 0.00 36.19 5.18
2031 2405 0.736325 ATCGCTACCGTTGTGACTGC 60.736 55.000 0.00 0.00 35.54 4.40
2032 2406 0.992072 CATCGCTACCGTTGTGACTG 59.008 55.000 0.00 0.00 35.54 3.51
2033 2407 0.736325 GCATCGCTACCGTTGTGACT 60.736 55.000 0.00 0.00 36.72 3.41
2034 2408 1.011968 TGCATCGCTACCGTTGTGAC 61.012 55.000 0.00 0.00 36.72 3.67
2035 2409 0.735978 CTGCATCGCTACCGTTGTGA 60.736 55.000 0.00 0.00 36.72 3.58
2036 2410 0.735978 TCTGCATCGCTACCGTTGTG 60.736 55.000 0.00 0.00 36.72 3.33
2037 2411 0.736325 GTCTGCATCGCTACCGTTGT 60.736 55.000 0.00 0.00 36.72 3.32
2038 2412 1.742900 CGTCTGCATCGCTACCGTTG 61.743 60.000 0.00 0.00 37.26 4.10
2039 2413 1.516386 CGTCTGCATCGCTACCGTT 60.516 57.895 0.00 0.00 35.54 4.44
2040 2414 2.102357 CGTCTGCATCGCTACCGT 59.898 61.111 0.00 0.00 35.54 4.83
2041 2415 2.655364 CCGTCTGCATCGCTACCG 60.655 66.667 6.01 0.00 0.00 4.02
2042 2416 1.878522 CACCGTCTGCATCGCTACC 60.879 63.158 6.01 0.00 0.00 3.18
2043 2417 0.867753 CTCACCGTCTGCATCGCTAC 60.868 60.000 6.01 0.00 0.00 3.58
2044 2418 1.029947 TCTCACCGTCTGCATCGCTA 61.030 55.000 6.01 0.00 0.00 4.26
2045 2419 2.182791 CTCACCGTCTGCATCGCT 59.817 61.111 6.01 0.00 0.00 4.93
2046 2420 2.161486 GTCTCACCGTCTGCATCGC 61.161 63.158 6.01 0.00 0.00 4.58
2047 2421 0.799917 CAGTCTCACCGTCTGCATCG 60.800 60.000 4.75 4.75 0.00 3.84
2048 2422 0.459237 CCAGTCTCACCGTCTGCATC 60.459 60.000 0.00 0.00 0.00 3.91
2049 2423 0.900182 TCCAGTCTCACCGTCTGCAT 60.900 55.000 0.00 0.00 0.00 3.96
2050 2424 1.527433 CTCCAGTCTCACCGTCTGCA 61.527 60.000 0.00 0.00 0.00 4.41
2051 2425 1.214062 CTCCAGTCTCACCGTCTGC 59.786 63.158 0.00 0.00 0.00 4.26
2052 2426 1.201181 CTTCTCCAGTCTCACCGTCTG 59.799 57.143 0.00 0.00 0.00 3.51
2053 2427 1.074084 TCTTCTCCAGTCTCACCGTCT 59.926 52.381 0.00 0.00 0.00 4.18
2054 2428 1.535833 TCTTCTCCAGTCTCACCGTC 58.464 55.000 0.00 0.00 0.00 4.79
2055 2429 1.996798 TTCTTCTCCAGTCTCACCGT 58.003 50.000 0.00 0.00 0.00 4.83
2056 2430 3.157932 GATTCTTCTCCAGTCTCACCG 57.842 52.381 0.00 0.00 0.00 4.94
2407 2781 2.596851 ATCACCCACGCTCTTGGCT 61.597 57.895 0.00 0.00 39.13 4.75
2408 2782 2.045926 ATCACCCACGCTCTTGGC 60.046 61.111 0.00 0.00 35.00 4.52
2409 2783 1.746615 CCATCACCCACGCTCTTGG 60.747 63.158 0.00 0.00 36.26 3.61
2410 2784 0.742281 CTCCATCACCCACGCTCTTG 60.742 60.000 0.00 0.00 0.00 3.02
2411 2785 1.599047 CTCCATCACCCACGCTCTT 59.401 57.895 0.00 0.00 0.00 2.85
2412 2786 3.023949 GCTCCATCACCCACGCTCT 62.024 63.158 0.00 0.00 0.00 4.09
2413 2787 2.512515 GCTCCATCACCCACGCTC 60.513 66.667 0.00 0.00 0.00 5.03
2414 2788 4.101448 GGCTCCATCACCCACGCT 62.101 66.667 0.00 0.00 0.00 5.07
2415 2789 3.704231 ATGGCTCCATCACCCACGC 62.704 63.158 0.00 0.00 29.42 5.34
2416 2790 1.820906 CATGGCTCCATCACCCACG 60.821 63.158 0.00 0.00 33.90 4.94
2417 2791 1.454479 CCATGGCTCCATCACCCAC 60.454 63.158 0.00 0.00 33.90 4.61
2418 2792 1.925285 GACCATGGCTCCATCACCCA 61.925 60.000 13.04 0.00 33.90 4.51
2419 2793 1.152881 GACCATGGCTCCATCACCC 60.153 63.158 13.04 0.00 33.90 4.61
2420 2794 1.524621 CGACCATGGCTCCATCACC 60.525 63.158 13.04 0.00 33.90 4.02
2421 2795 0.531532 CTCGACCATGGCTCCATCAC 60.532 60.000 13.04 0.00 33.90 3.06
2422 2796 1.689243 CCTCGACCATGGCTCCATCA 61.689 60.000 13.04 0.00 33.90 3.07
2423 2797 1.070445 CCTCGACCATGGCTCCATC 59.930 63.158 13.04 0.00 33.90 3.51
2424 2798 0.398522 TACCTCGACCATGGCTCCAT 60.399 55.000 13.04 0.00 37.08 3.41
2425 2799 1.001120 TACCTCGACCATGGCTCCA 59.999 57.895 13.04 0.00 0.00 3.86
2426 2800 1.742768 CTACCTCGACCATGGCTCC 59.257 63.158 13.04 0.00 0.00 4.70
2427 2801 1.068250 GCTACCTCGACCATGGCTC 59.932 63.158 13.04 7.94 0.00 4.70
2428 2802 2.435693 GGCTACCTCGACCATGGCT 61.436 63.158 13.04 0.00 0.00 4.75
2429 2803 2.109181 GGCTACCTCGACCATGGC 59.891 66.667 13.04 3.65 0.00 4.40
2430 2804 2.417516 CGGCTACCTCGACCATGG 59.582 66.667 11.19 11.19 0.00 3.66
2431 2805 1.226974 CACGGCTACCTCGACCATG 60.227 63.158 0.00 0.00 0.00 3.66
2432 2806 3.077519 GCACGGCTACCTCGACCAT 62.078 63.158 0.00 0.00 0.00 3.55
2433 2807 3.755628 GCACGGCTACCTCGACCA 61.756 66.667 0.00 0.00 0.00 4.02
2434 2808 2.775032 TTTGCACGGCTACCTCGACC 62.775 60.000 0.00 0.00 0.00 4.79
2435 2809 0.947180 TTTTGCACGGCTACCTCGAC 60.947 55.000 0.00 0.00 0.00 4.20
2436 2810 0.249953 TTTTTGCACGGCTACCTCGA 60.250 50.000 0.00 0.00 0.00 4.04
2437 2811 2.240230 TTTTTGCACGGCTACCTCG 58.760 52.632 0.00 0.00 0.00 4.63
2452 2826 1.199097 GACATCGACCACGGCATTTTT 59.801 47.619 0.00 0.00 40.21 1.94
2453 2827 0.802494 GACATCGACCACGGCATTTT 59.198 50.000 0.00 0.00 40.21 1.82
2454 2828 1.358725 CGACATCGACCACGGCATTT 61.359 55.000 0.00 0.00 43.02 2.32
2455 2829 1.809619 CGACATCGACCACGGCATT 60.810 57.895 0.00 0.00 43.02 3.56
2456 2830 2.202743 CGACATCGACCACGGCAT 60.203 61.111 0.00 0.00 43.02 4.40
2457 2831 3.336715 CTCGACATCGACCACGGCA 62.337 63.158 0.00 0.00 44.22 5.69
2458 2832 2.579787 CTCGACATCGACCACGGC 60.580 66.667 0.00 0.00 44.22 5.68
2459 2833 1.226323 GACTCGACATCGACCACGG 60.226 63.158 0.00 0.00 44.22 4.94
2460 2834 1.580385 CGACTCGACATCGACCACG 60.580 63.158 8.33 3.20 44.22 4.94
2461 2835 1.226323 CCGACTCGACATCGACCAC 60.226 63.158 14.38 0.00 44.22 4.16
2462 2836 2.404186 CCCGACTCGACATCGACCA 61.404 63.158 14.38 0.00 44.22 4.02
2463 2837 2.408022 CCCGACTCGACATCGACC 59.592 66.667 14.38 0.00 44.22 4.79
2464 2838 1.930908 AACCCCGACTCGACATCGAC 61.931 60.000 14.38 0.00 44.22 4.20
2466 2840 1.516386 CAACCCCGACTCGACATCG 60.516 63.158 0.00 7.25 39.33 3.84
2467 2841 1.810030 GCAACCCCGACTCGACATC 60.810 63.158 0.00 0.00 0.00 3.06
2468 2842 2.264794 GCAACCCCGACTCGACAT 59.735 61.111 0.00 0.00 0.00 3.06
2469 2843 3.998672 GGCAACCCCGACTCGACA 61.999 66.667 0.00 0.00 0.00 4.35
2480 2854 3.524648 TTCCTCGACACCGGCAACC 62.525 63.158 0.00 0.00 36.24 3.77
2481 2855 2.027625 CTTCCTCGACACCGGCAAC 61.028 63.158 0.00 0.00 36.24 4.17
2482 2856 2.342279 CTTCCTCGACACCGGCAA 59.658 61.111 0.00 0.00 36.24 4.52
2483 2857 2.915659 ACTTCCTCGACACCGGCA 60.916 61.111 0.00 0.00 36.24 5.69
2484 2858 2.126031 GACTTCCTCGACACCGGC 60.126 66.667 0.00 0.00 36.24 6.13
2485 2859 2.178521 CGACTTCCTCGACACCGG 59.821 66.667 0.00 0.00 46.14 5.28
2486 2860 2.504244 GCGACTTCCTCGACACCG 60.504 66.667 0.00 0.00 46.14 4.94
2491 2865 3.744719 CCACGGCGACTTCCTCGA 61.745 66.667 16.62 0.00 46.14 4.04
2492 2866 3.685214 CTCCACGGCGACTTCCTCG 62.685 68.421 16.62 0.00 45.97 4.63
2493 2867 2.182030 CTCCACGGCGACTTCCTC 59.818 66.667 16.62 0.00 0.00 3.71
2494 2868 4.070552 GCTCCACGGCGACTTCCT 62.071 66.667 16.62 0.00 0.00 3.36
2518 2892 2.501223 TAACTCGGCACCTCCTTGCG 62.501 60.000 0.00 0.00 44.00 4.85
2519 2893 0.741221 CTAACTCGGCACCTCCTTGC 60.741 60.000 0.00 0.00 42.18 4.01
2520 2894 0.608640 ACTAACTCGGCACCTCCTTG 59.391 55.000 0.00 0.00 0.00 3.61
2521 2895 0.896226 GACTAACTCGGCACCTCCTT 59.104 55.000 0.00 0.00 0.00 3.36
2522 2896 0.251653 TGACTAACTCGGCACCTCCT 60.252 55.000 0.00 0.00 0.00 3.69
2523 2897 0.824759 ATGACTAACTCGGCACCTCC 59.175 55.000 0.00 0.00 0.00 4.30
2524 2898 1.471676 CCATGACTAACTCGGCACCTC 60.472 57.143 0.00 0.00 0.00 3.85
2525 2899 0.537188 CCATGACTAACTCGGCACCT 59.463 55.000 0.00 0.00 0.00 4.00
2526 2900 0.462047 CCCATGACTAACTCGGCACC 60.462 60.000 0.00 0.00 0.00 5.01
2527 2901 1.090052 GCCCATGACTAACTCGGCAC 61.090 60.000 0.00 0.00 36.38 5.01
2528 2902 1.220749 GCCCATGACTAACTCGGCA 59.779 57.895 0.00 0.00 36.38 5.69
2529 2903 1.883084 CGCCCATGACTAACTCGGC 60.883 63.158 0.00 0.00 0.00 5.54
2530 2904 1.883084 GCGCCCATGACTAACTCGG 60.883 63.158 0.00 0.00 0.00 4.63
2531 2905 1.148157 CTGCGCCCATGACTAACTCG 61.148 60.000 4.18 0.00 0.00 4.18
2532 2906 1.432270 GCTGCGCCCATGACTAACTC 61.432 60.000 4.18 0.00 0.00 3.01
2533 2907 1.450312 GCTGCGCCCATGACTAACT 60.450 57.895 4.18 0.00 0.00 2.24
2534 2908 2.813179 CGCTGCGCCCATGACTAAC 61.813 63.158 9.88 0.00 0.00 2.34
2535 2909 2.511373 CGCTGCGCCCATGACTAA 60.511 61.111 9.88 0.00 0.00 2.24
2536 2910 4.529219 CCGCTGCGCCCATGACTA 62.529 66.667 18.00 0.00 0.00 2.59
2546 2920 4.111016 TACCTCGTCACCGCTGCG 62.111 66.667 16.34 16.34 0.00 5.18
2547 2921 2.202623 CTACCTCGTCACCGCTGC 60.203 66.667 0.00 0.00 0.00 5.25
2548 2922 1.154016 CACTACCTCGTCACCGCTG 60.154 63.158 0.00 0.00 0.00 5.18
2549 2923 2.341101 CCACTACCTCGTCACCGCT 61.341 63.158 0.00 0.00 0.00 5.52
2550 2924 2.181021 CCACTACCTCGTCACCGC 59.819 66.667 0.00 0.00 0.00 5.68
2551 2925 1.211969 CACCACTACCTCGTCACCG 59.788 63.158 0.00 0.00 0.00 4.94
2552 2926 0.038526 CACACCACTACCTCGTCACC 60.039 60.000 0.00 0.00 0.00 4.02
2553 2927 0.666577 GCACACCACTACCTCGTCAC 60.667 60.000 0.00 0.00 0.00 3.67
2554 2928 1.663739 GCACACCACTACCTCGTCA 59.336 57.895 0.00 0.00 0.00 4.35
2555 2929 1.080025 GGCACACCACTACCTCGTC 60.080 63.158 0.00 0.00 35.26 4.20
2556 2930 2.927580 CGGCACACCACTACCTCGT 61.928 63.158 0.00 0.00 34.57 4.18
2557 2931 2.126071 CGGCACACCACTACCTCG 60.126 66.667 0.00 0.00 34.57 4.63
2558 2932 1.823169 TTCCGGCACACCACTACCTC 61.823 60.000 0.00 0.00 34.57 3.85
2559 2933 1.827399 CTTCCGGCACACCACTACCT 61.827 60.000 0.00 0.00 34.57 3.08
2560 2934 1.375523 CTTCCGGCACACCACTACC 60.376 63.158 0.00 0.00 34.57 3.18
2561 2935 1.375523 CCTTCCGGCACACCACTAC 60.376 63.158 0.00 0.00 34.57 2.73
2562 2936 0.907704 ATCCTTCCGGCACACCACTA 60.908 55.000 0.00 0.00 34.57 2.74
2563 2937 2.224159 ATCCTTCCGGCACACCACT 61.224 57.895 0.00 0.00 34.57 4.00
2564 2938 2.040544 CATCCTTCCGGCACACCAC 61.041 63.158 0.00 0.00 34.57 4.16
2565 2939 1.561769 ATCATCCTTCCGGCACACCA 61.562 55.000 0.00 0.00 34.57 4.17
2566 2940 1.097547 CATCATCCTTCCGGCACACC 61.098 60.000 0.00 0.00 0.00 4.16
2567 2941 1.097547 CCATCATCCTTCCGGCACAC 61.098 60.000 0.00 0.00 0.00 3.82
2568 2942 1.224315 CCATCATCCTTCCGGCACA 59.776 57.895 0.00 0.00 0.00 4.57
2569 2943 1.097547 CACCATCATCCTTCCGGCAC 61.098 60.000 0.00 0.00 0.00 5.01
2570 2944 1.224315 CACCATCATCCTTCCGGCA 59.776 57.895 0.00 0.00 0.00 5.69
2571 2945 0.394352 AACACCATCATCCTTCCGGC 60.394 55.000 0.00 0.00 0.00 6.13
2572 2946 1.065491 TCAACACCATCATCCTTCCGG 60.065 52.381 0.00 0.00 0.00 5.14
2573 2947 2.009774 GTCAACACCATCATCCTTCCG 58.990 52.381 0.00 0.00 0.00 4.30
2574 2948 2.009774 CGTCAACACCATCATCCTTCC 58.990 52.381 0.00 0.00 0.00 3.46
2575 2949 2.673368 GTCGTCAACACCATCATCCTTC 59.327 50.000 0.00 0.00 0.00 3.46
2576 2950 2.699954 GTCGTCAACACCATCATCCTT 58.300 47.619 0.00 0.00 0.00 3.36
2577 2951 1.404181 CGTCGTCAACACCATCATCCT 60.404 52.381 0.00 0.00 0.00 3.24
2578 2952 0.999406 CGTCGTCAACACCATCATCC 59.001 55.000 0.00 0.00 0.00 3.51
2579 2953 0.370273 GCGTCGTCAACACCATCATC 59.630 55.000 0.00 0.00 0.00 2.92
2580 2954 1.351430 CGCGTCGTCAACACCATCAT 61.351 55.000 0.00 0.00 0.00 2.45
2581 2955 2.019408 CGCGTCGTCAACACCATCA 61.019 57.895 0.00 0.00 0.00 3.07
2582 2956 2.019951 ACGCGTCGTCAACACCATC 61.020 57.895 5.58 0.00 33.69 3.51
2583 2957 2.028484 ACGCGTCGTCAACACCAT 59.972 55.556 5.58 0.00 33.69 3.55
2595 2969 4.903010 AAACCTGCCACGACGCGT 62.903 61.111 13.85 13.85 42.36 6.01
2596 2970 4.368808 CAAACCTGCCACGACGCG 62.369 66.667 3.53 3.53 0.00 6.01
2597 2971 4.683334 GCAAACCTGCCACGACGC 62.683 66.667 0.00 0.00 43.26 5.19
2606 2980 2.576832 CCTGGGCTTGGCAAACCTG 61.577 63.158 18.46 17.01 36.63 4.00
2607 2981 2.203684 CCTGGGCTTGGCAAACCT 60.204 61.111 18.46 0.00 36.63 3.50
2608 2982 3.313524 CCCTGGGCTTGGCAAACC 61.314 66.667 11.25 11.25 0.00 3.27
2609 2983 2.203625 TCCCTGGGCTTGGCAAAC 60.204 61.111 8.22 0.00 0.00 2.93
2610 2984 2.203625 GTCCCTGGGCTTGGCAAA 60.204 61.111 8.22 0.00 0.00 3.68
2611 2985 3.506743 TGTCCCTGGGCTTGGCAA 61.507 61.111 8.22 0.00 0.00 4.52
2612 2986 4.284550 GTGTCCCTGGGCTTGGCA 62.285 66.667 8.22 0.00 0.00 4.92
2613 2987 3.590466 ATGTGTCCCTGGGCTTGGC 62.590 63.158 8.22 0.00 0.00 4.52
2614 2988 1.379044 GATGTGTCCCTGGGCTTGG 60.379 63.158 8.22 0.00 0.00 3.61
2615 2989 1.746615 CGATGTGTCCCTGGGCTTG 60.747 63.158 8.22 0.00 0.00 4.01
2616 2990 2.224159 ACGATGTGTCCCTGGGCTT 61.224 57.895 8.22 0.00 0.00 4.35
2617 2991 2.607750 ACGATGTGTCCCTGGGCT 60.608 61.111 8.22 0.00 0.00 5.19
2618 2992 2.436646 CACGATGTGTCCCTGGGC 60.437 66.667 8.22 3.87 0.00 5.36
2619 2993 2.268920 CCACGATGTGTCCCTGGG 59.731 66.667 6.33 6.33 0.00 4.45
2620 2994 1.079127 GTCCACGATGTGTCCCTGG 60.079 63.158 0.00 0.00 0.00 4.45
2621 2995 1.446099 CGTCCACGATGTGTCCCTG 60.446 63.158 0.00 0.00 43.02 4.45
2622 2996 1.605451 TCGTCCACGATGTGTCCCT 60.605 57.895 0.00 0.00 44.22 4.20
2623 2997 2.967397 TCGTCCACGATGTGTCCC 59.033 61.111 0.00 0.00 44.22 4.46
2632 3006 1.626654 GATGTGTGCCTTCGTCCACG 61.627 60.000 0.00 0.00 41.45 4.94
2633 3007 0.602638 TGATGTGTGCCTTCGTCCAC 60.603 55.000 0.00 0.00 0.00 4.02
2634 3008 0.320683 CTGATGTGTGCCTTCGTCCA 60.321 55.000 0.00 0.00 0.00 4.02
2635 3009 0.320771 ACTGATGTGTGCCTTCGTCC 60.321 55.000 0.00 0.00 0.00 4.79
2636 3010 0.792640 CACTGATGTGTGCCTTCGTC 59.207 55.000 0.00 0.00 39.24 4.20
2637 3011 2.918571 CACTGATGTGTGCCTTCGT 58.081 52.632 0.00 0.00 39.24 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.