Multiple sequence alignment - TraesCS1B01G216800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G216800 chr1B 100.000 2246 0 0 1 2246 392759502 392757257 0.000000e+00 4148.0
1 TraesCS1B01G216800 chr1B 98.325 597 9 1 1 597 392770727 392770132 0.000000e+00 1046.0
2 TraesCS1B01G216800 chr1B 98.325 597 9 1 1 597 392776361 392775766 0.000000e+00 1046.0
3 TraesCS1B01G216800 chr1B 97.990 597 11 1 1 597 392765114 392764519 0.000000e+00 1035.0
4 TraesCS1B01G216800 chr1D 95.426 962 22 9 708 1655 291807594 291806641 0.000000e+00 1513.0
5 TraesCS1B01G216800 chr1D 88.205 195 8 3 1711 1904 291806521 291806341 3.760000e-53 219.0
6 TraesCS1B01G216800 chr1D 97.581 124 2 1 594 717 291807905 291807783 6.280000e-51 211.0
7 TraesCS1B01G216800 chr1D 81.818 264 27 2 1983 2246 291806235 291805993 3.780000e-48 202.0
8 TraesCS1B01G216800 chr1D 96.154 52 1 1 1671 1721 291806584 291806533 1.430000e-12 84.2
9 TraesCS1B01G216800 chr1A 93.725 988 39 11 680 1655 364047180 364046204 0.000000e+00 1459.0
10 TraesCS1B01G216800 chr1A 83.631 336 24 11 1671 1989 364046147 364045826 1.020000e-73 287.0
11 TraesCS1B01G216800 chr7A 98.660 597 7 1 1 597 679401066 679400471 0.000000e+00 1057.0
12 TraesCS1B01G216800 chr2A 97.643 594 12 2 1 593 683571541 683570949 0.000000e+00 1018.0
13 TraesCS1B01G216800 chr2A 97.000 600 16 2 1 599 114500014 114499416 0.000000e+00 1007.0
14 TraesCS1B01G216800 chr3B 97.152 597 16 1 1 597 46046111 46046706 0.000000e+00 1007.0
15 TraesCS1B01G216800 chr6B 96.985 597 17 1 1 597 402213980 402214575 0.000000e+00 1002.0
16 TraesCS1B01G216800 chr3A 97.138 594 15 2 1 593 658853440 658852848 0.000000e+00 1002.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G216800 chr1B 392757257 392759502 2245 True 4148.00 4148 100.0000 1 2246 1 chr1B.!!$R1 2245
1 TraesCS1B01G216800 chr1B 392770132 392770727 595 True 1046.00 1046 98.3250 1 597 1 chr1B.!!$R3 596
2 TraesCS1B01G216800 chr1B 392775766 392776361 595 True 1046.00 1046 98.3250 1 597 1 chr1B.!!$R4 596
3 TraesCS1B01G216800 chr1B 392764519 392765114 595 True 1035.00 1035 97.9900 1 597 1 chr1B.!!$R2 596
4 TraesCS1B01G216800 chr1D 291805993 291807905 1912 True 445.84 1513 91.8368 594 2246 5 chr1D.!!$R1 1652
5 TraesCS1B01G216800 chr1A 364045826 364047180 1354 True 873.00 1459 88.6780 680 1989 2 chr1A.!!$R1 1309
6 TraesCS1B01G216800 chr7A 679400471 679401066 595 True 1057.00 1057 98.6600 1 597 1 chr7A.!!$R1 596
7 TraesCS1B01G216800 chr2A 683570949 683571541 592 True 1018.00 1018 97.6430 1 593 1 chr2A.!!$R2 592
8 TraesCS1B01G216800 chr2A 114499416 114500014 598 True 1007.00 1007 97.0000 1 599 1 chr2A.!!$R1 598
9 TraesCS1B01G216800 chr3B 46046111 46046706 595 False 1007.00 1007 97.1520 1 597 1 chr3B.!!$F1 596
10 TraesCS1B01G216800 chr6B 402213980 402214575 595 False 1002.00 1002 96.9850 1 597 1 chr6B.!!$F1 596
11 TraesCS1B01G216800 chr3A 658852848 658853440 592 True 1002.00 1002 97.1380 1 593 1 chr3A.!!$R1 592

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
671 672 0.666913 ACGATTACGATGAGGGTCCG 59.333 55.0 0.0 0.0 42.66 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1767 2047 0.03467 ATGGTCTTCCTCAGCTTGGC 60.035 55.0 0.0 0.0 34.23 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
159 160 2.544844 ACGGGAGAAGGGTGATAAGA 57.455 50.000 0.00 0.0 0.00 2.10
247 248 1.174712 TCCCCGACGACGACTTCTTT 61.175 55.000 9.28 0.0 42.66 2.52
282 283 1.657751 CTCCTCGACGACATGGCAGA 61.658 60.000 0.00 0.0 0.00 4.26
643 644 2.425143 TCCTTATCGTCCGTGGTACT 57.575 50.000 0.00 0.0 0.00 2.73
662 663 2.427453 ACTCAGCTCCAACGATTACGAT 59.573 45.455 0.00 0.0 42.66 3.73
671 672 0.666913 ACGATTACGATGAGGGTCCG 59.333 55.000 0.00 0.0 42.66 4.79
744 943 4.142249 GCTTGGCCGTTTTCATAGGTATTT 60.142 41.667 0.00 0.0 0.00 1.40
745 944 4.974368 TGGCCGTTTTCATAGGTATTTG 57.026 40.909 0.00 0.0 0.00 2.32
746 945 4.337145 TGGCCGTTTTCATAGGTATTTGT 58.663 39.130 0.00 0.0 0.00 2.83
747 946 5.498393 TGGCCGTTTTCATAGGTATTTGTA 58.502 37.500 0.00 0.0 0.00 2.41
822 1031 2.344872 GTGTACCCCACGTGTCCC 59.655 66.667 15.65 0.0 33.61 4.46
969 1182 2.229062 TGGTGAACTGAGAAGAGCTACG 59.771 50.000 0.00 0.0 0.00 3.51
970 1183 2.488545 GGTGAACTGAGAAGAGCTACGA 59.511 50.000 0.00 0.0 0.00 3.43
971 1184 3.426963 GGTGAACTGAGAAGAGCTACGAG 60.427 52.174 0.00 0.0 0.00 4.18
972 1185 2.162608 TGAACTGAGAAGAGCTACGAGC 59.837 50.000 0.00 0.0 42.84 5.03
973 1186 1.827681 ACTGAGAAGAGCTACGAGCA 58.172 50.000 9.09 0.0 45.56 4.26
974 1187 2.374184 ACTGAGAAGAGCTACGAGCAT 58.626 47.619 9.09 0.0 45.56 3.79
1344 1557 2.907897 ATAAGTGCCGCTGAGCCGTC 62.908 60.000 0.00 0.0 0.00 4.79
1460 1673 7.166167 TCCTTTCCTAAATGTACTTGAAGTCC 58.834 38.462 0.00 0.0 0.00 3.85
1555 1768 9.780413 CCAAGTCTAAAGAAAAATCTATTGAGC 57.220 33.333 0.00 0.0 0.00 4.26
1661 1876 6.555463 AGACTTAATAGAAAATGGACCCGA 57.445 37.500 0.00 0.0 0.00 5.14
1662 1877 7.138054 AGACTTAATAGAAAATGGACCCGAT 57.862 36.000 0.00 0.0 0.00 4.18
1663 1878 7.217906 AGACTTAATAGAAAATGGACCCGATC 58.782 38.462 0.00 0.0 0.00 3.69
1664 1879 7.071321 AGACTTAATAGAAAATGGACCCGATCT 59.929 37.037 0.00 0.0 0.00 2.75
1666 1881 8.711170 ACTTAATAGAAAATGGACCCGATCTAA 58.289 33.333 0.00 0.0 0.00 2.10
1667 1882 9.209175 CTTAATAGAAAATGGACCCGATCTAAG 57.791 37.037 0.00 0.0 0.00 2.18
1668 1883 3.809905 AGAAAATGGACCCGATCTAAGC 58.190 45.455 0.00 0.0 0.00 3.09
1669 1884 2.640316 AAATGGACCCGATCTAAGCC 57.360 50.000 0.00 0.0 0.00 4.35
1686 1943 1.227263 CCACCCGATCTAAGCCACG 60.227 63.158 0.00 0.0 0.00 4.94
1721 2000 0.108186 TGTGATACCCAAGCTGAGCG 60.108 55.000 0.00 0.0 0.00 5.03
1730 2009 3.406595 AAGCTGAGCGGGGCCATAC 62.407 63.158 4.39 0.0 0.00 2.39
1767 2047 7.067372 ACCATAACCACATCATTGTTGTGATAG 59.933 37.037 23.28 12.7 45.83 2.08
1796 2076 0.329596 GGAAGACCATGAGCCACCTT 59.670 55.000 0.00 0.0 35.97 3.50
1797 2077 1.272147 GGAAGACCATGAGCCACCTTT 60.272 52.381 0.00 0.0 35.97 3.11
1798 2078 2.087646 GAAGACCATGAGCCACCTTTC 58.912 52.381 0.00 0.0 0.00 2.62
1799 2079 1.366319 AGACCATGAGCCACCTTTCT 58.634 50.000 0.00 0.0 0.00 2.52
1800 2080 1.707427 AGACCATGAGCCACCTTTCTT 59.293 47.619 0.00 0.0 0.00 2.52
1801 2081 2.108952 AGACCATGAGCCACCTTTCTTT 59.891 45.455 0.00 0.0 0.00 2.52
1802 2082 2.229784 GACCATGAGCCACCTTTCTTTG 59.770 50.000 0.00 0.0 0.00 2.77
1803 2083 2.242043 CCATGAGCCACCTTTCTTTGT 58.758 47.619 0.00 0.0 0.00 2.83
1804 2084 2.229784 CCATGAGCCACCTTTCTTTGTC 59.770 50.000 0.00 0.0 0.00 3.18
1805 2085 1.593196 TGAGCCACCTTTCTTTGTCG 58.407 50.000 0.00 0.0 0.00 4.35
1806 2086 1.134220 TGAGCCACCTTTCTTTGTCGT 60.134 47.619 0.00 0.0 0.00 4.34
1807 2087 1.531578 GAGCCACCTTTCTTTGTCGTC 59.468 52.381 0.00 0.0 0.00 4.20
1808 2088 1.134220 AGCCACCTTTCTTTGTCGTCA 60.134 47.619 0.00 0.0 0.00 4.35
1917 2207 9.846248 GAGTTTTTAGTTTCATAGATGCAACAT 57.154 29.630 7.59 0.0 36.58 2.71
1938 2228 3.211963 GGCGGATGGCGATGCTTT 61.212 61.111 0.00 0.0 44.92 3.51
1963 2259 2.546778 TCGAGTTTGTGTTTCGAGCTT 58.453 42.857 0.00 0.0 38.32 3.74
1965 2261 3.000925 TCGAGTTTGTGTTTCGAGCTTTC 59.999 43.478 0.00 0.0 38.32 2.62
1968 2264 4.601019 AGTTTGTGTTTCGAGCTTTCATG 58.399 39.130 0.00 0.0 0.00 3.07
1980 2276 4.084328 CGAGCTTTCATGTTTCTCGAGTTT 60.084 41.667 13.13 0.0 46.59 2.66
1989 2285 3.563808 TGTTTCTCGAGTTTGTTCATGGG 59.436 43.478 13.13 0.0 0.00 4.00
2044 2385 8.553459 ACAAGGTTTGATGTCAGATACTTTAG 57.447 34.615 0.00 0.0 0.00 1.85
2047 2388 9.965902 AAGGTTTGATGTCAGATACTTTAGATT 57.034 29.630 0.00 0.0 0.00 2.40
2071 2412 2.459060 TAAGGATTCAACAACCGCGA 57.541 45.000 8.23 0.0 0.00 5.87
2077 2418 0.934496 TTCAACAACCGCGACTTCAG 59.066 50.000 8.23 0.0 0.00 3.02
2082 2423 1.278238 CAACCGCGACTTCAGGATAC 58.722 55.000 8.23 0.0 0.00 2.24
2104 2445 2.224818 TGGTTTTTAGGGGCACGTACAT 60.225 45.455 0.00 0.0 0.00 2.29
2136 2477 3.126514 CCAGCTGTCATCAACAAGATCAC 59.873 47.826 13.81 0.0 37.45 3.06
2137 2478 3.749609 CAGCTGTCATCAACAAGATCACA 59.250 43.478 5.25 0.0 35.17 3.58
2138 2479 3.750130 AGCTGTCATCAACAAGATCACAC 59.250 43.478 0.00 0.0 32.35 3.82
2139 2480 3.120060 GCTGTCATCAACAAGATCACACC 60.120 47.826 0.00 0.0 32.35 4.16
2140 2481 4.321718 CTGTCATCAACAAGATCACACCT 58.678 43.478 0.00 0.0 32.35 4.00
2141 2482 4.067192 TGTCATCAACAAGATCACACCTG 58.933 43.478 0.00 0.0 32.35 4.00
2142 2483 4.067896 GTCATCAACAAGATCACACCTGT 58.932 43.478 0.00 0.0 33.72 4.00
2143 2484 5.221621 TGTCATCAACAAGATCACACCTGTA 60.222 40.000 0.00 0.0 32.35 2.74
2144 2485 5.700832 GTCATCAACAAGATCACACCTGTAA 59.299 40.000 0.00 0.0 33.72 2.41
2145 2486 6.372659 GTCATCAACAAGATCACACCTGTAAT 59.627 38.462 0.00 0.0 33.72 1.89
2146 2487 6.595326 TCATCAACAAGATCACACCTGTAATC 59.405 38.462 0.00 0.0 33.72 1.75
2147 2488 5.863965 TCAACAAGATCACACCTGTAATCA 58.136 37.500 0.00 0.0 0.00 2.57
2148 2489 6.295249 TCAACAAGATCACACCTGTAATCAA 58.705 36.000 0.00 0.0 0.00 2.57
2149 2490 6.204688 TCAACAAGATCACACCTGTAATCAAC 59.795 38.462 0.00 0.0 0.00 3.18
2150 2491 5.620206 ACAAGATCACACCTGTAATCAACA 58.380 37.500 0.00 0.0 36.42 3.33
2151 2492 6.061441 ACAAGATCACACCTGTAATCAACAA 58.939 36.000 0.00 0.0 37.74 2.83
2152 2493 6.205464 ACAAGATCACACCTGTAATCAACAAG 59.795 38.462 0.00 0.0 37.74 3.16
2153 2494 6.114187 AGATCACACCTGTAATCAACAAGA 57.886 37.500 0.00 0.0 37.74 3.02
2154 2495 6.715280 AGATCACACCTGTAATCAACAAGAT 58.285 36.000 0.00 0.0 37.74 2.40
2155 2496 6.820656 AGATCACACCTGTAATCAACAAGATC 59.179 38.462 0.00 0.0 37.74 2.75
2156 2497 5.863965 TCACACCTGTAATCAACAAGATCA 58.136 37.500 0.00 0.0 37.74 2.92
2157 2498 5.700832 TCACACCTGTAATCAACAAGATCAC 59.299 40.000 0.00 0.0 37.74 3.06
2180 2521 1.141019 GCTCCGATAGTGGCGACAA 59.859 57.895 0.00 0.0 46.06 3.18
2203 2544 0.386352 CACGTCGGCAGTTCGTTCTA 60.386 55.000 0.00 0.0 35.62 2.10
2219 2560 2.361483 TAGCGGCGGTAGTGGTCA 60.361 61.111 15.64 0.0 0.00 4.02
2231 2572 1.056660 AGTGGTCATTCGGTGGTCTT 58.943 50.000 0.00 0.0 0.00 3.01
2234 2575 2.232941 GTGGTCATTCGGTGGTCTTAGA 59.767 50.000 0.00 0.0 0.00 2.10
2243 2584 1.001633 GGTGGTCTTAGAAAGCGGTGA 59.998 52.381 0.00 0.0 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
159 160 1.598701 GCAGAGCGCTCCCCAAAAAT 61.599 55.000 32.94 9.90 37.77 1.82
218 219 0.606401 TCGTCGGGGAAGTAGTCGTT 60.606 55.000 0.00 0.00 0.00 3.85
247 248 4.648626 AGGTCGTGGACGTCGGGA 62.649 66.667 9.92 3.55 40.80 5.14
282 283 4.608774 TGGGGTCGGTGTCCTCGT 62.609 66.667 0.00 0.00 0.00 4.18
643 644 2.425668 TCATCGTAATCGTTGGAGCTGA 59.574 45.455 0.00 0.00 37.37 4.26
662 663 1.659022 TATGAAAACCCGGACCCTCA 58.341 50.000 0.73 0.11 0.00 3.86
671 672 2.492088 GGAGCAGTGGTTATGAAAACCC 59.508 50.000 0.00 0.00 39.54 4.11
787 996 1.338136 ACGGCAGGAACTAGGGATGG 61.338 60.000 0.00 0.00 36.02 3.51
855 1064 2.813474 CGGCGGCATGTCTTTCGA 60.813 61.111 10.53 0.00 0.00 3.71
969 1182 2.806856 CGTGCCTTGCTCGATGCTC 61.807 63.158 4.70 0.00 46.28 4.26
970 1183 2.816958 CGTGCCTTGCTCGATGCT 60.817 61.111 4.70 0.00 46.28 3.79
971 1184 4.527157 GCGTGCCTTGCTCGATGC 62.527 66.667 13.86 0.00 46.28 3.91
972 1185 3.869272 GGCGTGCCTTGCTCGATG 61.869 66.667 13.86 0.00 46.28 3.84
1344 1557 3.785486 ACACGTCCACATATGACTCATG 58.215 45.455 10.38 3.22 0.00 3.07
1528 1741 9.780413 CTCAATAGATTTTTCTTTAGACTTGGC 57.220 33.333 0.00 0.00 0.00 4.52
1593 1808 9.725019 ATCTGTAACATCAAATTTACTGTGAGA 57.275 29.630 5.78 7.83 32.13 3.27
1655 1870 1.446366 GGGTGGCTTAGATCGGGTC 59.554 63.158 0.00 0.00 0.00 4.46
1657 1872 1.472662 ATCGGGTGGCTTAGATCGGG 61.473 60.000 0.00 0.00 0.00 5.14
1658 1873 0.038159 GATCGGGTGGCTTAGATCGG 60.038 60.000 0.00 0.00 31.61 4.18
1659 1874 0.962489 AGATCGGGTGGCTTAGATCG 59.038 55.000 7.00 0.00 42.94 3.69
1660 1875 3.615351 GCTTAGATCGGGTGGCTTAGATC 60.615 52.174 5.24 5.24 39.64 2.75
1661 1876 2.300437 GCTTAGATCGGGTGGCTTAGAT 59.700 50.000 0.00 0.00 0.00 1.98
1662 1877 1.687123 GCTTAGATCGGGTGGCTTAGA 59.313 52.381 0.00 0.00 0.00 2.10
1663 1878 1.270358 GGCTTAGATCGGGTGGCTTAG 60.270 57.143 0.00 0.00 0.00 2.18
1664 1879 0.756903 GGCTTAGATCGGGTGGCTTA 59.243 55.000 0.00 0.00 0.00 3.09
1666 1881 1.689233 TGGCTTAGATCGGGTGGCT 60.689 57.895 0.00 0.00 0.00 4.75
1667 1882 1.523938 GTGGCTTAGATCGGGTGGC 60.524 63.158 0.00 0.00 0.00 5.01
1668 1883 1.227263 CGTGGCTTAGATCGGGTGG 60.227 63.158 0.00 0.00 0.00 4.61
1669 1884 1.883084 GCGTGGCTTAGATCGGGTG 60.883 63.158 0.00 0.00 0.00 4.61
1686 1943 2.173382 CAACAAGCGCACTACGGC 59.827 61.111 11.47 0.00 43.93 5.68
1724 2003 1.644786 GGTCTTGTGTGGCGTATGGC 61.645 60.000 0.56 0.56 42.51 4.40
1730 2009 0.802494 GGTTATGGTCTTGTGTGGCG 59.198 55.000 0.00 0.00 0.00 5.69
1767 2047 0.034670 ATGGTCTTCCTCAGCTTGGC 60.035 55.000 0.00 0.00 34.23 4.52
1796 2076 3.550275 CGACAAAGAGTGACGACAAAGAA 59.450 43.478 0.00 0.00 46.41 2.52
1797 2077 3.113322 CGACAAAGAGTGACGACAAAGA 58.887 45.455 0.00 0.00 46.41 2.52
1798 2078 2.218759 CCGACAAAGAGTGACGACAAAG 59.781 50.000 0.00 0.00 46.41 2.77
1799 2079 2.198406 CCGACAAAGAGTGACGACAAA 58.802 47.619 0.00 0.00 46.41 2.83
1800 2080 1.847818 CCGACAAAGAGTGACGACAA 58.152 50.000 0.00 0.00 46.41 3.18
1801 2081 0.596600 GCCGACAAAGAGTGACGACA 60.597 55.000 0.00 0.00 46.41 4.35
1802 2082 1.606350 CGCCGACAAAGAGTGACGAC 61.606 60.000 0.00 0.00 46.41 4.34
1803 2083 1.371267 CGCCGACAAAGAGTGACGA 60.371 57.895 0.00 0.00 46.41 4.20
1804 2084 1.371267 TCGCCGACAAAGAGTGACG 60.371 57.895 0.00 0.00 43.69 4.35
1805 2085 1.282930 GGTCGCCGACAAAGAGTGAC 61.283 60.000 20.08 2.07 39.69 3.67
1806 2086 1.006571 GGTCGCCGACAAAGAGTGA 60.007 57.895 20.08 0.00 33.68 3.41
1807 2087 2.027625 GGGTCGCCGACAAAGAGTG 61.028 63.158 20.08 0.00 33.68 3.51
1808 2088 1.827399 ATGGGTCGCCGACAAAGAGT 61.827 55.000 20.08 0.00 33.68 3.24
1912 2202 1.434696 GCCATCCGCCTGAATGTTG 59.565 57.895 0.00 0.00 0.00 3.33
1913 2203 2.114670 CGCCATCCGCCTGAATGTT 61.115 57.895 0.00 0.00 0.00 2.71
1914 2204 2.329539 ATCGCCATCCGCCTGAATGT 62.330 55.000 0.00 0.00 36.73 2.71
1917 2207 2.203056 CATCGCCATCCGCCTGAA 60.203 61.111 0.00 0.00 36.73 3.02
1919 2209 4.923942 AGCATCGCCATCCGCCTG 62.924 66.667 0.00 0.00 36.73 4.85
1933 2223 6.195613 CGAAACACAAACTCGAATAAAAAGCA 59.804 34.615 0.00 0.00 34.52 3.91
1938 2228 5.235616 AGCTCGAAACACAAACTCGAATAAA 59.764 36.000 0.00 0.00 40.76 1.40
1963 2259 6.429624 CATGAACAAACTCGAGAAACATGAA 58.570 36.000 21.68 0.00 35.95 2.57
1965 2261 5.149273 CCATGAACAAACTCGAGAAACATG 58.851 41.667 21.68 20.80 34.41 3.21
1968 2264 3.058224 CCCCATGAACAAACTCGAGAAAC 60.058 47.826 21.68 4.81 0.00 2.78
1980 2276 1.561769 ATCTCACCGCCCCATGAACA 61.562 55.000 0.00 0.00 0.00 3.18
1989 2285 0.526211 GAAACCCAAATCTCACCGCC 59.474 55.000 0.00 0.00 0.00 6.13
2044 2385 6.128929 GCGGTTGTTGAATCCTTAAACAAATC 60.129 38.462 4.49 1.27 43.32 2.17
2047 2388 4.612943 GCGGTTGTTGAATCCTTAAACAA 58.387 39.130 0.00 0.00 40.49 2.83
2057 2398 1.531149 CTGAAGTCGCGGTTGTTGAAT 59.469 47.619 6.13 0.00 0.00 2.57
2066 2407 0.249073 CCAGTATCCTGAAGTCGCGG 60.249 60.000 6.13 0.00 41.50 6.46
2067 2408 0.456221 ACCAGTATCCTGAAGTCGCG 59.544 55.000 0.00 0.00 41.50 5.87
2071 2412 5.281037 CCCCTAAAAACCAGTATCCTGAAGT 60.281 44.000 0.00 0.00 41.50 3.01
2077 2418 3.021695 GTGCCCCTAAAAACCAGTATCC 58.978 50.000 0.00 0.00 0.00 2.59
2082 2423 1.808343 GTACGTGCCCCTAAAAACCAG 59.192 52.381 0.00 0.00 0.00 4.00
2087 2428 3.008157 TCTTCATGTACGTGCCCCTAAAA 59.992 43.478 10.38 0.00 0.00 1.52
2088 2429 2.568062 TCTTCATGTACGTGCCCCTAAA 59.432 45.455 10.38 0.00 0.00 1.85
2104 2445 0.471780 TGACAGCTGGGAGGTCTTCA 60.472 55.000 19.93 6.99 32.84 3.02
2140 2481 4.000325 CCGGTGTGATCTTGTTGATTACA 59.000 43.478 0.00 0.00 45.49 2.41
2141 2482 3.181510 GCCGGTGTGATCTTGTTGATTAC 60.182 47.826 1.90 0.00 40.71 1.89
2142 2483 3.006940 GCCGGTGTGATCTTGTTGATTA 58.993 45.455 1.90 0.00 35.14 1.75
2143 2484 1.812571 GCCGGTGTGATCTTGTTGATT 59.187 47.619 1.90 0.00 35.14 2.57
2144 2485 1.003580 AGCCGGTGTGATCTTGTTGAT 59.996 47.619 1.90 0.00 38.27 2.57
2145 2486 0.396435 AGCCGGTGTGATCTTGTTGA 59.604 50.000 1.90 0.00 0.00 3.18
2146 2487 0.798776 GAGCCGGTGTGATCTTGTTG 59.201 55.000 1.90 0.00 0.00 3.33
2147 2488 0.321653 GGAGCCGGTGTGATCTTGTT 60.322 55.000 1.90 0.00 0.00 2.83
2148 2489 1.296715 GGAGCCGGTGTGATCTTGT 59.703 57.895 1.90 0.00 0.00 3.16
2149 2490 1.811266 CGGAGCCGGTGTGATCTTG 60.811 63.158 1.90 0.00 35.56 3.02
2150 2491 1.330655 ATCGGAGCCGGTGTGATCTT 61.331 55.000 9.29 0.00 40.25 2.40
2151 2492 0.467474 TATCGGAGCCGGTGTGATCT 60.467 55.000 9.29 0.00 40.25 2.75
2152 2493 0.039074 CTATCGGAGCCGGTGTGATC 60.039 60.000 9.29 0.00 40.25 2.92
2153 2494 0.755698 ACTATCGGAGCCGGTGTGAT 60.756 55.000 9.29 4.59 40.25 3.06
2154 2495 1.379443 ACTATCGGAGCCGGTGTGA 60.379 57.895 9.29 0.00 40.25 3.58
2155 2496 1.226974 CACTATCGGAGCCGGTGTG 60.227 63.158 9.29 11.24 40.25 3.82
2156 2497 2.423898 CCACTATCGGAGCCGGTGT 61.424 63.158 9.29 3.15 40.25 4.16
2157 2498 2.417516 CCACTATCGGAGCCGGTG 59.582 66.667 9.29 9.14 40.25 4.94
2177 2518 3.049674 CTGCCGACGTGCCATTGT 61.050 61.111 0.00 0.00 0.00 2.71
2180 2521 2.742372 GAACTGCCGACGTGCCAT 60.742 61.111 0.00 0.00 0.00 4.40
2186 2527 1.403972 GCTAGAACGAACTGCCGACG 61.404 60.000 0.00 0.00 0.00 5.12
2193 2534 1.308069 TACCGCCGCTAGAACGAACT 61.308 55.000 0.00 0.00 34.06 3.01
2197 2538 1.585521 CACTACCGCCGCTAGAACG 60.586 63.158 0.00 0.00 0.00 3.95
2203 2544 2.573609 GAATGACCACTACCGCCGCT 62.574 60.000 0.00 0.00 0.00 5.52
2219 2560 2.618053 CGCTTTCTAAGACCACCGAAT 58.382 47.619 0.00 0.00 0.00 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.