Multiple sequence alignment - TraesCS1B01G216700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G216700 chr1B 100.000 4407 0 0 1 4407 392531161 392526755 0.000000e+00 8139
1 TraesCS1B01G216700 chr1B 86.629 1406 135 35 696 2089 392150314 392151678 0.000000e+00 1506
2 TraesCS1B01G216700 chr1A 89.879 1492 103 31 638 2108 363656250 363654786 0.000000e+00 1875
3 TraesCS1B01G216700 chr1A 85.332 1718 114 65 2199 3838 363654729 363653072 0.000000e+00 1650
4 TraesCS1B01G216700 chr1A 84.182 1473 143 58 701 2125 363420008 363421438 0.000000e+00 1347
5 TraesCS1B01G216700 chr1A 89.147 516 29 13 3836 4333 363653045 363652539 6.260000e-173 617
6 TraesCS1B01G216700 chr1A 93.564 404 26 0 3 406 363656704 363656301 1.750000e-168 603
7 TraesCS1B01G216700 chr1A 93.165 278 19 0 3130 3407 363422515 363422792 4.100000e-110 409
8 TraesCS1B01G216700 chr1A 97.345 113 3 0 2985 3097 363422231 363422343 4.500000e-45 193
9 TraesCS1B01G216700 chr1D 90.103 1364 83 26 567 1927 291588678 291587364 0.000000e+00 1724
10 TraesCS1B01G216700 chr1D 82.586 2073 167 102 1994 3959 291587206 291585221 0.000000e+00 1650
11 TraesCS1B01G216700 chr1D 87.137 1135 88 22 842 1928 291083123 291084247 0.000000e+00 1234
12 TraesCS1B01G216700 chr1D 90.737 475 36 7 2985 3457 291085271 291085739 1.040000e-175 627
13 TraesCS1B01G216700 chr1D 92.079 404 31 1 3 406 291589077 291588675 6.400000e-158 568
14 TraesCS1B01G216700 chr1D 92.063 378 21 3 3979 4348 291581330 291580954 1.400000e-144 523
15 TraesCS1B01G216700 chr1D 78.784 740 105 31 2197 2888 291084538 291085273 2.420000e-122 449
16 TraesCS1B01G216700 chr3B 86.145 166 20 2 406 569 107966265 107966101 4.530000e-40 176
17 TraesCS1B01G216700 chr6D 85.714 168 20 3 406 571 388209767 388209932 1.630000e-39 174
18 TraesCS1B01G216700 chr7D 86.076 158 18 4 406 562 575899013 575899167 2.730000e-37 167
19 TraesCS1B01G216700 chr2D 83.735 166 25 2 406 571 190024111 190023948 5.900000e-34 156
20 TraesCS1B01G216700 chr5A 84.375 160 21 4 411 570 663843821 663843976 2.120000e-33 154
21 TraesCS1B01G216700 chr7A 82.840 169 28 1 408 575 98785006 98785174 2.750000e-32 150
22 TraesCS1B01G216700 chr7B 83.133 166 25 3 407 571 157687509 157687346 9.880000e-32 148
23 TraesCS1B01G216700 chr5D 82.036 167 28 2 406 572 221039650 221039486 1.650000e-29 141
24 TraesCS1B01G216700 chr2B 82.317 164 26 3 406 568 122648796 122648957 5.940000e-29 139


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G216700 chr1B 392526755 392531161 4406 True 8139.000000 8139 100.000000 1 4407 1 chr1B.!!$R1 4406
1 TraesCS1B01G216700 chr1B 392150314 392151678 1364 False 1506.000000 1506 86.629000 696 2089 1 chr1B.!!$F1 1393
2 TraesCS1B01G216700 chr1A 363652539 363656704 4165 True 1186.250000 1875 89.480500 3 4333 4 chr1A.!!$R1 4330
3 TraesCS1B01G216700 chr1A 363420008 363422792 2784 False 649.666667 1347 91.564000 701 3407 3 chr1A.!!$F1 2706
4 TraesCS1B01G216700 chr1D 291580954 291589077 8123 True 1116.250000 1724 89.207750 3 4348 4 chr1D.!!$R1 4345
5 TraesCS1B01G216700 chr1D 291083123 291085739 2616 False 770.000000 1234 85.552667 842 3457 3 chr1D.!!$F1 2615

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
408 409 0.386476 TAGCCCGCACCGTATAACTG 59.614 55.000 0.00 0.0 0.00 3.16 F
1218 1242 0.246360 ATGTCACGACCGATGAGCAA 59.754 50.000 0.00 0.0 0.00 3.91 F
1639 1705 0.756442 TTTCAGCTGCCAACCTGCTT 60.756 50.000 9.47 0.0 45.16 3.91 F
1909 1977 1.068895 CTGGAGAGAGCTATGCAGGTG 59.931 57.143 5.83 0.0 36.75 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2193 2396 1.006832 CGCGTTCCCGATCTGAAAAT 58.993 50.000 0.00 0.00 35.63 1.82 R
2896 3201 0.102300 ACAAAACGCAAAGGGTCAGC 59.898 50.000 0.00 0.00 0.00 4.26 R
2901 3206 1.064952 ACGAAGACAAAACGCAAAGGG 59.935 47.619 0.00 0.00 0.00 3.95 R
3827 4347 0.179073 AAAGCGATCGGTATGCTGCT 60.179 50.000 21.57 0.39 39.30 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 5.645067 GGTGAGTTGAATGATTCTGATGTGA 59.355 40.000 6.73 0.00 0.00 3.58
84 85 1.068264 TCTGATGTGACGTCTCACTGC 60.068 52.381 21.47 14.24 46.31 4.40
116 117 6.057533 TCCATTACATCCTTGATCATGTCAC 58.942 40.000 3.00 0.00 36.32 3.67
123 124 7.272244 ACATCCTTGATCATGTCACGTATTAA 58.728 34.615 0.00 0.00 36.32 1.40
128 129 8.450964 CCTTGATCATGTCACGTATTAAGTTTT 58.549 33.333 0.00 0.00 36.32 2.43
157 158 8.688184 CCGTGTATTATATAGTGTCGTTTTCAG 58.312 37.037 0.00 0.00 0.00 3.02
162 163 7.821595 TTATATAGTGTCGTTTTCAGTGTGG 57.178 36.000 0.00 0.00 0.00 4.17
189 190 0.535335 TCCAGTGAACGATACCCTGC 59.465 55.000 0.00 0.00 0.00 4.85
193 194 2.034179 CAGTGAACGATACCCTGCGATA 59.966 50.000 0.00 0.00 0.00 2.92
195 196 2.793232 GTGAACGATACCCTGCGATAAC 59.207 50.000 0.00 0.00 0.00 1.89
229 230 3.962718 CCCCTTTGATGCTTATGGTGATT 59.037 43.478 0.00 0.00 0.00 2.57
288 289 6.747280 GCTCAGTCATTTTAATTGTGCGTAAT 59.253 34.615 0.00 0.00 0.00 1.89
404 405 0.885879 CATCTAGCCCGCACCGTATA 59.114 55.000 0.00 0.00 0.00 1.47
405 406 1.271379 CATCTAGCCCGCACCGTATAA 59.729 52.381 0.00 0.00 0.00 0.98
406 407 0.670162 TCTAGCCCGCACCGTATAAC 59.330 55.000 0.00 0.00 0.00 1.89
407 408 0.672342 CTAGCCCGCACCGTATAACT 59.328 55.000 0.00 0.00 0.00 2.24
408 409 0.386476 TAGCCCGCACCGTATAACTG 59.614 55.000 0.00 0.00 0.00 3.16
409 410 1.142314 GCCCGCACCGTATAACTGA 59.858 57.895 0.00 0.00 0.00 3.41
410 411 0.874607 GCCCGCACCGTATAACTGAG 60.875 60.000 0.00 0.00 0.00 3.35
411 412 0.742505 CCCGCACCGTATAACTGAGA 59.257 55.000 0.00 0.00 0.00 3.27
412 413 1.340248 CCCGCACCGTATAACTGAGAT 59.660 52.381 0.00 0.00 0.00 2.75
413 414 2.223971 CCCGCACCGTATAACTGAGATT 60.224 50.000 0.00 0.00 0.00 2.40
414 415 3.454375 CCGCACCGTATAACTGAGATTT 58.546 45.455 0.00 0.00 0.00 2.17
415 416 4.500205 CCCGCACCGTATAACTGAGATTTA 60.500 45.833 0.00 0.00 0.00 1.40
416 417 5.045215 CCGCACCGTATAACTGAGATTTAA 58.955 41.667 0.00 0.00 0.00 1.52
417 418 5.175126 CCGCACCGTATAACTGAGATTTAAG 59.825 44.000 0.00 0.00 0.00 1.85
418 419 5.332355 CGCACCGTATAACTGAGATTTAAGC 60.332 44.000 0.00 0.00 0.00 3.09
419 420 5.522460 GCACCGTATAACTGAGATTTAAGCA 59.478 40.000 0.00 0.00 0.00 3.91
420 421 6.036735 GCACCGTATAACTGAGATTTAAGCAA 59.963 38.462 0.00 0.00 0.00 3.91
421 422 7.621991 CACCGTATAACTGAGATTTAAGCAAG 58.378 38.462 0.00 0.00 0.00 4.01
422 423 7.277981 CACCGTATAACTGAGATTTAAGCAAGT 59.722 37.037 0.00 0.00 0.00 3.16
423 424 7.491696 ACCGTATAACTGAGATTTAAGCAAGTC 59.508 37.037 0.00 0.00 0.00 3.01
424 425 7.707035 CCGTATAACTGAGATTTAAGCAAGTCT 59.293 37.037 0.00 0.00 33.74 3.24
425 426 9.088512 CGTATAACTGAGATTTAAGCAAGTCTT 57.911 33.333 0.00 0.00 38.79 3.01
429 430 8.910351 AACTGAGATTTAAGCAAGTCTTACTT 57.090 30.769 3.56 3.56 39.39 2.24
430 431 9.998106 AACTGAGATTTAAGCAAGTCTTACTTA 57.002 29.630 1.69 1.69 36.03 2.24
431 432 9.998106 ACTGAGATTTAAGCAAGTCTTACTTAA 57.002 29.630 12.24 12.24 36.03 1.85
433 434 9.998106 TGAGATTTAAGCAAGTCTTACTTAAGT 57.002 29.630 13.68 13.68 36.03 2.24
442 443 9.991906 AGCAAGTCTTACTTAAGTAACATAACA 57.008 29.630 21.52 2.81 36.03 2.41
446 447 9.938280 AGTCTTACTTAAGTAACATAACATGCA 57.062 29.630 21.52 0.00 35.75 3.96
449 450 9.988350 CTTACTTAAGTAACATAACATGCAAGG 57.012 33.333 21.52 5.74 35.75 3.61
450 451 7.391148 ACTTAAGTAACATAACATGCAAGGG 57.609 36.000 6.26 0.00 0.00 3.95
451 452 7.172342 ACTTAAGTAACATAACATGCAAGGGA 58.828 34.615 6.26 0.00 0.00 4.20
452 453 7.336931 ACTTAAGTAACATAACATGCAAGGGAG 59.663 37.037 6.26 0.00 0.00 4.30
453 454 4.526970 AGTAACATAACATGCAAGGGAGG 58.473 43.478 0.00 0.00 0.00 4.30
454 455 3.737559 AACATAACATGCAAGGGAGGA 57.262 42.857 0.00 0.00 0.00 3.71
455 456 3.737559 ACATAACATGCAAGGGAGGAA 57.262 42.857 0.00 0.00 0.00 3.36
456 457 4.046286 ACATAACATGCAAGGGAGGAAA 57.954 40.909 0.00 0.00 0.00 3.13
457 458 4.415596 ACATAACATGCAAGGGAGGAAAA 58.584 39.130 0.00 0.00 0.00 2.29
458 459 4.463891 ACATAACATGCAAGGGAGGAAAAG 59.536 41.667 0.00 0.00 0.00 2.27
459 460 1.928868 ACATGCAAGGGAGGAAAAGG 58.071 50.000 0.00 0.00 0.00 3.11
460 461 1.147817 ACATGCAAGGGAGGAAAAGGT 59.852 47.619 0.00 0.00 0.00 3.50
461 462 2.378547 ACATGCAAGGGAGGAAAAGGTA 59.621 45.455 0.00 0.00 0.00 3.08
462 463 3.181423 ACATGCAAGGGAGGAAAAGGTAA 60.181 43.478 0.00 0.00 0.00 2.85
463 464 3.603965 TGCAAGGGAGGAAAAGGTAAA 57.396 42.857 0.00 0.00 0.00 2.01
464 465 3.917300 TGCAAGGGAGGAAAAGGTAAAA 58.083 40.909 0.00 0.00 0.00 1.52
465 466 4.488770 TGCAAGGGAGGAAAAGGTAAAAT 58.511 39.130 0.00 0.00 0.00 1.82
466 467 5.646215 TGCAAGGGAGGAAAAGGTAAAATA 58.354 37.500 0.00 0.00 0.00 1.40
467 468 6.078664 TGCAAGGGAGGAAAAGGTAAAATAA 58.921 36.000 0.00 0.00 0.00 1.40
468 469 6.555360 TGCAAGGGAGGAAAAGGTAAAATAAA 59.445 34.615 0.00 0.00 0.00 1.40
469 470 7.071321 TGCAAGGGAGGAAAAGGTAAAATAAAA 59.929 33.333 0.00 0.00 0.00 1.52
470 471 7.934665 GCAAGGGAGGAAAAGGTAAAATAAAAA 59.065 33.333 0.00 0.00 0.00 1.94
507 508 7.875316 ACGGATCTCAATATAAAATCTCACG 57.125 36.000 0.00 0.00 0.00 4.35
508 509 6.868864 ACGGATCTCAATATAAAATCTCACGG 59.131 38.462 0.00 0.00 0.00 4.94
509 510 7.090808 CGGATCTCAATATAAAATCTCACGGA 58.909 38.462 0.00 0.00 0.00 4.69
510 511 7.761704 CGGATCTCAATATAAAATCTCACGGAT 59.238 37.037 0.00 0.00 35.97 4.18
519 520 7.993821 ATAAAATCTCACGGATATAGCATCG 57.006 36.000 0.00 0.00 33.71 3.84
520 521 5.644977 AAATCTCACGGATATAGCATCGA 57.355 39.130 0.00 0.00 33.71 3.59
521 522 4.624336 ATCTCACGGATATAGCATCGAC 57.376 45.455 0.00 0.00 32.04 4.20
522 523 3.676093 TCTCACGGATATAGCATCGACT 58.324 45.455 0.00 0.00 0.00 4.18
523 524 3.437049 TCTCACGGATATAGCATCGACTG 59.563 47.826 0.00 0.00 0.00 3.51
524 525 3.408634 TCACGGATATAGCATCGACTGA 58.591 45.455 0.00 0.00 0.00 3.41
525 526 3.437049 TCACGGATATAGCATCGACTGAG 59.563 47.826 0.00 0.00 0.00 3.35
526 527 3.437049 CACGGATATAGCATCGACTGAGA 59.563 47.826 0.00 0.00 0.00 3.27
527 528 3.437395 ACGGATATAGCATCGACTGAGAC 59.563 47.826 0.00 0.00 0.00 3.36
528 529 3.687212 CGGATATAGCATCGACTGAGACT 59.313 47.826 0.00 0.00 0.00 3.24
529 530 4.155099 CGGATATAGCATCGACTGAGACTT 59.845 45.833 0.00 0.00 0.00 3.01
530 531 5.351740 CGGATATAGCATCGACTGAGACTTA 59.648 44.000 0.00 0.00 0.00 2.24
531 532 6.128254 CGGATATAGCATCGACTGAGACTTAA 60.128 42.308 0.00 0.00 0.00 1.85
532 533 7.024768 GGATATAGCATCGACTGAGACTTAAC 58.975 42.308 0.00 0.00 0.00 2.01
533 534 5.836821 ATAGCATCGACTGAGACTTAACA 57.163 39.130 0.00 0.00 0.00 2.41
534 535 4.521130 AGCATCGACTGAGACTTAACAA 57.479 40.909 0.00 0.00 0.00 2.83
535 536 4.883083 AGCATCGACTGAGACTTAACAAA 58.117 39.130 0.00 0.00 0.00 2.83
536 537 4.926238 AGCATCGACTGAGACTTAACAAAG 59.074 41.667 0.00 0.00 0.00 2.77
537 538 4.686554 GCATCGACTGAGACTTAACAAAGT 59.313 41.667 0.00 0.00 35.34 2.66
546 547 3.893720 GACTTAACAAAGTCTCGGTCGA 58.106 45.455 10.31 0.00 44.32 4.20
547 548 3.636381 ACTTAACAAAGTCTCGGTCGAC 58.364 45.455 7.13 7.13 0.00 4.20
548 549 3.317430 ACTTAACAAAGTCTCGGTCGACT 59.683 43.478 16.46 0.00 45.73 4.18
549 550 2.135664 AACAAAGTCTCGGTCGACTG 57.864 50.000 18.66 18.66 43.14 3.51
550 551 1.315690 ACAAAGTCTCGGTCGACTGA 58.684 50.000 25.02 25.02 43.14 3.41
558 559 1.085091 TCGGTCGACTGAGACTTAGC 58.915 55.000 23.11 0.00 40.76 3.09
559 560 0.803117 CGGTCGACTGAGACTTAGCA 59.197 55.000 20.01 0.00 40.76 3.49
560 561 1.199327 CGGTCGACTGAGACTTAGCAA 59.801 52.381 20.01 0.00 40.76 3.91
561 562 2.729467 CGGTCGACTGAGACTTAGCAAG 60.729 54.545 20.01 0.00 40.76 4.01
562 563 2.488545 GGTCGACTGAGACTTAGCAAGA 59.511 50.000 16.46 0.00 40.76 3.02
563 564 3.494232 GTCGACTGAGACTTAGCAAGAC 58.506 50.000 8.70 0.00 38.09 3.01
564 565 3.189702 GTCGACTGAGACTTAGCAAGACT 59.810 47.826 8.70 2.60 38.09 3.24
565 566 3.189495 TCGACTGAGACTTAGCAAGACTG 59.811 47.826 5.85 0.00 33.75 3.51
566 567 3.189495 CGACTGAGACTTAGCAAGACTGA 59.811 47.826 5.85 0.00 33.75 3.41
567 568 4.142491 CGACTGAGACTTAGCAAGACTGAT 60.142 45.833 5.85 0.00 33.75 2.90
578 579 9.601217 ACTTAGCAAGACTGATAAATTTATCGT 57.399 29.630 25.73 24.49 41.87 3.73
594 595 7.778470 ATTTATCGTTAGCTCTTCTCAAAGG 57.222 36.000 0.00 0.00 33.03 3.11
628 629 5.309323 TGCAAATATGTGGCTTTGTACTC 57.691 39.130 0.00 0.00 35.33 2.59
631 632 5.106157 GCAAATATGTGGCTTTGTACTCTGT 60.106 40.000 0.00 0.00 35.33 3.41
725 727 4.468095 TCGCTGCTTTCTAAACTGAAAC 57.532 40.909 0.00 0.00 33.11 2.78
834 838 8.420374 AGAACCATTTAGTAATCATGTACGTG 57.580 34.615 8.90 8.90 0.00 4.49
854 859 2.261729 GGTTCTGAAGAGGGGAGAACT 58.738 52.381 0.00 0.00 43.40 3.01
857 862 4.345854 GTTCTGAAGAGGGGAGAACTAGA 58.654 47.826 0.00 0.00 41.53 2.43
874 879 4.246458 ACTAGACCAACGAGAAAATGCTC 58.754 43.478 0.00 0.00 0.00 4.26
883 888 1.514873 GAAAATGCTCAAGCCGGCG 60.515 57.895 23.20 8.11 41.18 6.46
909 921 4.429108 GACTTGATCTACTTGTCTCTGCC 58.571 47.826 0.00 0.00 0.00 4.85
940 958 8.693625 AGACACAGGTTCTGTACTATAAATACC 58.306 37.037 0.00 0.00 43.43 2.73
1116 1140 0.387622 CAAACCTTGATGCAGCCACG 60.388 55.000 0.00 0.00 0.00 4.94
1179 1203 0.734253 CGCCGAGCTACTCATATGCC 60.734 60.000 0.00 0.00 0.00 4.40
1185 1209 4.562347 CCGAGCTACTCATATGCCTTCAAT 60.562 45.833 0.00 0.00 0.00 2.57
1194 1218 6.098838 ACTCATATGCCTTCAATCACTACTCA 59.901 38.462 0.00 0.00 0.00 3.41
1200 1224 4.101741 GCCTTCAATCACTACTCAGGGTAT 59.898 45.833 0.00 0.00 0.00 2.73
1218 1242 0.246360 ATGTCACGACCGATGAGCAA 59.754 50.000 0.00 0.00 0.00 3.91
1529 1561 1.136891 GAACCAAGGCAAGTGCAAACT 59.863 47.619 5.52 0.00 44.36 2.66
1566 1625 6.354938 CCATATGCAGTGATCATAATAGGCT 58.645 40.000 0.00 0.00 31.08 4.58
1571 1630 8.954950 ATGCAGTGATCATAATAGGCTTATAC 57.045 34.615 0.00 0.00 0.00 1.47
1572 1631 7.035612 TGCAGTGATCATAATAGGCTTATACG 58.964 38.462 0.00 0.00 0.00 3.06
1639 1705 0.756442 TTTCAGCTGCCAACCTGCTT 60.756 50.000 9.47 0.00 45.16 3.91
1684 1750 5.297029 TGTTGGATTTTCATACACGAACACA 59.703 36.000 0.00 0.00 0.00 3.72
1738 1804 3.623060 CCACAGGTATGCAACACAGATAC 59.377 47.826 0.00 0.00 0.00 2.24
1762 1830 6.656693 ACATGTTTCCTCTTCTATCCAAACAG 59.343 38.462 0.00 0.00 37.21 3.16
1764 1832 6.231211 TGTTTCCTCTTCTATCCAAACAGTC 58.769 40.000 0.00 0.00 31.73 3.51
1769 1837 5.046304 CCTCTTCTATCCAAACAGTCAAGGA 60.046 44.000 0.00 0.00 34.12 3.36
1774 1842 7.452880 TCTATCCAAACAGTCAAGGAATTTG 57.547 36.000 0.00 0.00 38.17 2.32
1794 1862 6.968263 TTTGTTCCCAAGATAACATGACAA 57.032 33.333 0.00 0.00 35.64 3.18
1797 1865 7.156876 TGTTCCCAAGATAACATGACAATTC 57.843 36.000 0.00 0.00 30.88 2.17
1909 1977 1.068895 CTGGAGAGAGCTATGCAGGTG 59.931 57.143 5.83 0.00 36.75 4.00
1912 1980 1.480137 GAGAGAGCTATGCAGGTGTGT 59.520 52.381 0.00 0.00 30.99 3.72
1928 1996 4.110482 GGTGTGTCACCGTATTCATAGAC 58.890 47.826 0.00 0.00 44.95 2.59
1930 1998 5.165676 GTGTGTCACCGTATTCATAGACAA 58.834 41.667 0.00 0.00 37.69 3.18
1933 2001 7.167635 GTGTGTCACCGTATTCATAGACAATAG 59.832 40.741 0.00 0.00 37.69 1.73
1934 2029 6.641314 GTGTCACCGTATTCATAGACAATAGG 59.359 42.308 0.00 0.00 37.69 2.57
1936 2031 7.085116 GTCACCGTATTCATAGACAATAGGAG 58.915 42.308 0.00 0.00 0.00 3.69
1938 2110 7.940688 TCACCGTATTCATAGACAATAGGAGTA 59.059 37.037 0.00 0.00 0.00 2.59
1939 2111 8.237949 CACCGTATTCATAGACAATAGGAGTAG 58.762 40.741 0.00 0.00 0.00 2.57
1947 2119 9.647918 TCATAGACAATAGGAGTAGATTGTTCT 57.352 33.333 2.09 4.21 44.35 3.01
1984 2156 7.264373 ACAATAGATTCTAATTTTCCTGCCG 57.736 36.000 0.00 0.00 0.00 5.69
2023 2195 5.718801 TTACATTCCCCAACTAGCCAATA 57.281 39.130 0.00 0.00 0.00 1.90
2092 2268 3.857157 TCAAAGGCATCCTGGTATACC 57.143 47.619 15.50 15.50 32.13 2.73
2093 2269 3.393687 TCAAAGGCATCCTGGTATACCT 58.606 45.455 22.41 0.00 32.13 3.08
2095 2271 2.795291 AGGCATCCTGGTATACCTGA 57.205 50.000 25.84 19.96 37.15 3.86
2099 2275 3.327757 GGCATCCTGGTATACCTGAATGA 59.672 47.826 25.73 16.77 37.15 2.57
2108 2284 8.037758 CCTGGTATACCTGAATGAAGCTATAAG 58.962 40.741 25.84 8.63 37.15 1.73
2109 2285 7.386851 TGGTATACCTGAATGAAGCTATAAGC 58.613 38.462 22.41 0.00 38.07 3.09
2110 2286 7.235606 TGGTATACCTGAATGAAGCTATAAGCT 59.764 37.037 22.41 0.00 45.33 3.74
2126 2306 1.668419 AGCTACCATTTCACCATCGC 58.332 50.000 0.00 0.00 0.00 4.58
2128 2308 1.742831 GCTACCATTTCACCATCGCAA 59.257 47.619 0.00 0.00 0.00 4.85
2129 2309 2.358898 GCTACCATTTCACCATCGCAAT 59.641 45.455 0.00 0.00 0.00 3.56
2130 2310 2.945447 ACCATTTCACCATCGCAATG 57.055 45.000 0.00 0.00 0.00 2.82
2132 2312 2.164219 ACCATTTCACCATCGCAATGTC 59.836 45.455 0.00 0.00 0.00 3.06
2133 2313 2.424601 CCATTTCACCATCGCAATGTCT 59.575 45.455 0.00 0.00 0.00 3.41
2134 2314 3.627123 CCATTTCACCATCGCAATGTCTA 59.373 43.478 0.00 0.00 0.00 2.59
2135 2315 4.496341 CCATTTCACCATCGCAATGTCTAC 60.496 45.833 0.00 0.00 0.00 2.59
2137 2317 2.616960 TCACCATCGCAATGTCTACAC 58.383 47.619 0.00 0.00 0.00 2.90
2138 2318 2.028567 TCACCATCGCAATGTCTACACA 60.029 45.455 0.00 0.00 36.78 3.72
2139 2319 2.741517 CACCATCGCAATGTCTACACAA 59.258 45.455 0.00 0.00 35.64 3.33
2140 2320 3.002791 ACCATCGCAATGTCTACACAAG 58.997 45.455 0.00 0.00 35.64 3.16
2142 2322 3.181517 CCATCGCAATGTCTACACAAGTG 60.182 47.826 0.00 0.00 35.64 3.16
2143 2323 1.798223 TCGCAATGTCTACACAAGTGC 59.202 47.619 0.00 1.53 41.23 4.40
2144 2324 1.800586 CGCAATGTCTACACAAGTGCT 59.199 47.619 0.00 0.00 41.93 4.40
2145 2325 2.411935 CGCAATGTCTACACAAGTGCTG 60.412 50.000 0.00 0.00 41.93 4.41
2146 2326 2.807967 GCAATGTCTACACAAGTGCTGA 59.192 45.455 0.00 0.00 41.34 4.26
2147 2327 3.438087 GCAATGTCTACACAAGTGCTGAT 59.562 43.478 0.00 0.00 41.34 2.90
2148 2328 4.670992 GCAATGTCTACACAAGTGCTGATG 60.671 45.833 0.00 0.00 41.34 3.07
2163 2366 6.154445 AGTGCTGATGCTAAACAAAATGAAG 58.846 36.000 0.00 0.00 40.48 3.02
2164 2367 5.922544 GTGCTGATGCTAAACAAAATGAAGT 59.077 36.000 0.00 0.00 40.48 3.01
2165 2368 7.040478 AGTGCTGATGCTAAACAAAATGAAGTA 60.040 33.333 0.00 0.00 40.48 2.24
2166 2369 7.594758 GTGCTGATGCTAAACAAAATGAAGTAA 59.405 33.333 0.00 0.00 40.48 2.24
2167 2370 8.140628 TGCTGATGCTAAACAAAATGAAGTAAA 58.859 29.630 0.00 0.00 40.48 2.01
2168 2371 8.642020 GCTGATGCTAAACAAAATGAAGTAAAG 58.358 33.333 0.00 0.00 36.03 1.85
2169 2372 9.897744 CTGATGCTAAACAAAATGAAGTAAAGA 57.102 29.630 0.00 0.00 0.00 2.52
2173 2376 9.677567 TGCTAAACAAAATGAAGTAAAGATCAC 57.322 29.630 0.00 0.00 0.00 3.06
2174 2377 9.899226 GCTAAACAAAATGAAGTAAAGATCACT 57.101 29.630 0.00 0.00 0.00 3.41
2177 2380 9.899226 AAACAAAATGAAGTAAAGATCACTAGC 57.101 29.630 0.00 0.00 0.00 3.42
2221 2434 4.848685 GGGAACGCGTACATGGAT 57.151 55.556 14.46 0.00 0.00 3.41
2503 2722 2.034221 AAAGCGTCCTCCTTGGCC 59.966 61.111 0.00 0.00 35.26 5.36
2506 2725 4.475135 GCGTCCTCCTTGGCCTCC 62.475 72.222 3.32 0.00 35.26 4.30
2514 2733 2.106683 CCTTGGCCTCCGCGTAAAG 61.107 63.158 3.32 0.00 35.02 1.85
2517 2736 2.890961 GGCCTCCGCGTAAAGAGC 60.891 66.667 4.92 5.49 35.02 4.09
2531 2750 4.083324 CGTAAAGAGCTTCAGCCATTTTCA 60.083 41.667 4.64 0.00 43.38 2.69
2532 2751 3.930634 AAGAGCTTCAGCCATTTTCAC 57.069 42.857 0.00 0.00 43.38 3.18
2537 2756 1.470098 CTTCAGCCATTTTCACCTCCG 59.530 52.381 0.00 0.00 0.00 4.63
2896 3201 5.180868 GCATATGGATTTTCAGGTAGAGCAG 59.819 44.000 4.56 0.00 0.00 4.24
2903 3208 4.042251 AGGTAGAGCAGCTGACCC 57.958 61.111 20.43 8.62 32.41 4.46
2904 3209 1.390125 AGGTAGAGCAGCTGACCCT 59.610 57.895 20.43 12.70 32.41 4.34
2906 3211 0.615850 GGTAGAGCAGCTGACCCTTT 59.384 55.000 20.43 2.83 0.00 3.11
2907 3212 1.677217 GGTAGAGCAGCTGACCCTTTG 60.677 57.143 20.43 0.00 0.00 2.77
2908 3213 0.036010 TAGAGCAGCTGACCCTTTGC 60.036 55.000 20.43 0.00 36.83 3.68
2950 3266 9.975218 ATACAAGTTCAGGTGGAAATAAATACT 57.025 29.630 0.00 0.00 37.23 2.12
2951 3267 8.706322 ACAAGTTCAGGTGGAAATAAATACTT 57.294 30.769 0.00 0.00 37.23 2.24
2952 3268 9.802039 ACAAGTTCAGGTGGAAATAAATACTTA 57.198 29.630 0.00 0.00 37.23 2.24
3059 3379 2.045045 CTCGGCCTGCCCATCAAA 60.045 61.111 0.00 0.00 0.00 2.69
3149 3613 7.537596 ACAAAATAACAGGACAATTCCATCA 57.462 32.000 0.00 0.00 45.72 3.07
3237 3711 0.575390 CGTGCGACGTTCTTGTTCTT 59.425 50.000 0.00 0.00 36.74 2.52
3242 3716 2.156891 GCGACGTTCTTGTTCTTATGCA 59.843 45.455 0.00 0.00 0.00 3.96
3361 3836 2.818714 CAGGCGCTGGAGCTCTTG 60.819 66.667 14.64 7.87 39.32 3.02
3394 3869 2.852075 AACCGCAACCTCCCCTCA 60.852 61.111 0.00 0.00 0.00 3.86
3407 3882 1.203440 TCCCCTCAAAGCCCTTCTAGT 60.203 52.381 0.00 0.00 0.00 2.57
3408 3883 1.210722 CCCCTCAAAGCCCTTCTAGTC 59.789 57.143 0.00 0.00 0.00 2.59
3409 3884 1.210722 CCCTCAAAGCCCTTCTAGTCC 59.789 57.143 0.00 0.00 0.00 3.85
3411 3886 2.093235 CCTCAAAGCCCTTCTAGTCCAG 60.093 54.545 0.00 0.00 0.00 3.86
3413 3888 3.454082 CTCAAAGCCCTTCTAGTCCAGAT 59.546 47.826 0.00 0.00 31.77 2.90
3415 3890 2.095604 AGCCCTTCTAGTCCAGATCC 57.904 55.000 0.00 0.00 31.77 3.36
3416 3891 1.292242 AGCCCTTCTAGTCCAGATCCA 59.708 52.381 0.00 0.00 31.77 3.41
3417 3892 1.691434 GCCCTTCTAGTCCAGATCCAG 59.309 57.143 0.00 0.00 31.77 3.86
3419 3894 3.230134 CCCTTCTAGTCCAGATCCAGAG 58.770 54.545 0.00 0.00 31.77 3.35
3425 3900 7.365473 CCTTCTAGTCCAGATCCAGAGAAAAAT 60.365 40.741 0.00 0.00 31.77 1.82
3429 3904 4.271291 GTCCAGATCCAGAGAAAAATACGC 59.729 45.833 0.00 0.00 0.00 4.42
3435 3910 2.348666 CCAGAGAAAAATACGCCACGAG 59.651 50.000 0.00 0.00 0.00 4.18
3437 3912 3.432252 CAGAGAAAAATACGCCACGAGTT 59.568 43.478 0.00 0.00 0.00 3.01
3469 3944 3.021695 TCAATAAGACCTGGATCGACGT 58.978 45.455 0.00 0.00 0.00 4.34
3470 3945 3.116300 CAATAAGACCTGGATCGACGTG 58.884 50.000 0.00 0.00 0.00 4.49
3471 3946 0.454600 TAAGACCTGGATCGACGTGC 59.545 55.000 0.00 0.00 0.00 5.34
3472 3947 1.532604 AAGACCTGGATCGACGTGCA 61.533 55.000 0.00 0.00 0.00 4.57
3502 3977 6.714810 TGATTTCATGGTTGTGTTACTAGCTT 59.285 34.615 0.00 0.00 0.00 3.74
3503 3978 6.554334 TTTCATGGTTGTGTTACTAGCTTC 57.446 37.500 0.00 0.00 0.00 3.86
3524 4004 1.226916 CTGCTCTCTACGCTGCCTG 60.227 63.158 0.00 0.00 0.00 4.85
3546 4026 1.834263 AGTTTCTAATCGAGCAGGCCT 59.166 47.619 0.00 0.00 0.00 5.19
3547 4027 3.031736 AGTTTCTAATCGAGCAGGCCTA 58.968 45.455 3.98 0.00 0.00 3.93
3548 4028 3.068873 AGTTTCTAATCGAGCAGGCCTAG 59.931 47.826 3.98 0.47 0.00 3.02
3553 4033 0.111446 ATCGAGCAGGCCTAGCTAGA 59.889 55.000 28.26 28.26 45.43 2.43
3554 4034 0.111446 TCGAGCAGGCCTAGCTAGAT 59.889 55.000 25.02 6.69 43.58 1.98
3597 4100 0.473326 GCCAAGATCAGAGGCTGGAT 59.527 55.000 13.83 0.00 44.92 3.41
3605 4108 2.265367 TCAGAGGCTGGATGGTGTTTA 58.735 47.619 0.00 0.00 31.51 2.01
3606 4109 2.027192 TCAGAGGCTGGATGGTGTTTAC 60.027 50.000 0.00 0.00 31.51 2.01
3607 4110 2.026822 CAGAGGCTGGATGGTGTTTACT 60.027 50.000 0.00 0.00 0.00 2.24
3608 4111 2.026822 AGAGGCTGGATGGTGTTTACTG 60.027 50.000 0.00 0.00 0.00 2.74
3610 4113 0.811281 GCTGGATGGTGTTTACTGGC 59.189 55.000 0.00 0.00 0.00 4.85
3611 4114 1.614317 GCTGGATGGTGTTTACTGGCT 60.614 52.381 0.00 0.00 0.00 4.75
3612 4115 2.355716 GCTGGATGGTGTTTACTGGCTA 60.356 50.000 0.00 0.00 0.00 3.93
3613 4116 3.685550 GCTGGATGGTGTTTACTGGCTAT 60.686 47.826 0.00 0.00 0.00 2.97
3614 4117 3.879295 CTGGATGGTGTTTACTGGCTATG 59.121 47.826 0.00 0.00 0.00 2.23
3615 4118 2.618709 GGATGGTGTTTACTGGCTATGC 59.381 50.000 0.00 0.00 0.00 3.14
3616 4119 2.869101 TGGTGTTTACTGGCTATGCA 57.131 45.000 0.00 0.00 0.00 3.96
3617 4120 3.364460 TGGTGTTTACTGGCTATGCAT 57.636 42.857 3.79 3.79 0.00 3.96
3618 4121 4.495690 TGGTGTTTACTGGCTATGCATA 57.504 40.909 6.20 6.20 0.00 3.14
3619 4122 5.047566 TGGTGTTTACTGGCTATGCATAT 57.952 39.130 6.92 0.00 0.00 1.78
3620 4123 4.821260 TGGTGTTTACTGGCTATGCATATG 59.179 41.667 6.92 0.00 0.00 1.78
3646 4149 2.750888 GGGCATGCGAAACCGAGAC 61.751 63.158 12.44 0.00 0.00 3.36
3662 4176 2.943033 CGAGACCAATAAACCCATCCAC 59.057 50.000 0.00 0.00 0.00 4.02
3671 4185 3.512219 AAACCCATCCACCGTTCTAAA 57.488 42.857 0.00 0.00 0.00 1.85
3740 4260 4.696877 CAGTACAAGTGATTCTGCATCCAA 59.303 41.667 0.00 0.00 0.00 3.53
3741 4261 5.356190 CAGTACAAGTGATTCTGCATCCAAT 59.644 40.000 0.00 0.00 0.00 3.16
3742 4262 4.978083 ACAAGTGATTCTGCATCCAATC 57.022 40.909 0.00 0.00 0.00 2.67
3743 4263 3.698040 ACAAGTGATTCTGCATCCAATCC 59.302 43.478 9.52 3.64 0.00 3.01
3744 4264 3.657398 AGTGATTCTGCATCCAATCCA 57.343 42.857 9.52 0.00 0.00 3.41
3745 4265 4.180377 AGTGATTCTGCATCCAATCCAT 57.820 40.909 9.52 0.00 0.00 3.41
3777 4297 2.632377 CCAGAATCATGTGGCGTTACT 58.368 47.619 0.00 0.00 32.55 2.24
3779 4299 3.525537 CAGAATCATGTGGCGTTACTCT 58.474 45.455 0.00 0.00 0.00 3.24
3781 4301 5.109210 CAGAATCATGTGGCGTTACTCTTA 58.891 41.667 0.00 0.00 0.00 2.10
3784 4304 2.829720 TCATGTGGCGTTACTCTTACCT 59.170 45.455 0.00 0.00 0.00 3.08
3785 4305 2.736144 TGTGGCGTTACTCTTACCTG 57.264 50.000 0.00 0.00 0.00 4.00
3786 4306 1.337447 TGTGGCGTTACTCTTACCTGC 60.337 52.381 0.00 0.00 0.00 4.85
3827 4347 2.629210 CGAAAAGTTCCACGCGCA 59.371 55.556 5.73 0.00 0.00 6.09
3900 4455 2.046023 CGCAGGGGATTGTGCTCA 60.046 61.111 0.00 0.00 37.55 4.26
3901 4456 2.401766 CGCAGGGGATTGTGCTCAC 61.402 63.158 0.00 0.00 37.55 3.51
3902 4457 2.401766 GCAGGGGATTGTGCTCACG 61.402 63.158 0.00 0.00 36.71 4.35
3903 4458 1.296392 CAGGGGATTGTGCTCACGA 59.704 57.895 0.00 0.00 0.00 4.35
3931 4486 2.487762 ACGATGCCATGTGAAACGAAAT 59.512 40.909 0.00 0.00 42.39 2.17
3935 4495 3.899734 TGCCATGTGAAACGAAATGAAG 58.100 40.909 0.00 0.00 42.39 3.02
3947 4507 5.269459 ACGAAATGAAGTGAATTCTGACG 57.731 39.130 7.05 0.00 38.83 4.35
3950 4510 5.107491 CGAAATGAAGTGAATTCTGACGTGA 60.107 40.000 7.05 0.00 38.83 4.35
4034 8466 2.047443 GGGGAGAGAGACGAGCGTT 61.047 63.158 0.00 0.00 0.00 4.84
4036 8468 1.306642 GGGAGAGAGACGAGCGTTGA 61.307 60.000 0.00 0.00 0.00 3.18
4038 8470 1.532921 GGAGAGAGACGAGCGTTGATG 60.533 57.143 0.00 0.00 0.00 3.07
4044 8476 1.209275 GACGAGCGTTGATGGATCGG 61.209 60.000 4.48 0.00 46.58 4.18
4045 8477 2.589492 CGAGCGTTGATGGATCGGC 61.589 63.158 0.00 0.00 39.43 5.54
4090 8523 0.776810 TTGAATGAGCCCCTGTTCCA 59.223 50.000 0.00 0.00 0.00 3.53
4139 8572 1.605202 GCTTCTGATCTCTGATCGGCC 60.605 57.143 10.57 0.00 0.00 6.13
4233 8669 2.074729 TGGTGGGAAAATCAACGGTT 57.925 45.000 0.00 0.00 0.00 4.44
4338 8784 3.242641 GGCCGACCGATTTCACTTAATTC 60.243 47.826 0.00 0.00 0.00 2.17
4348 8794 9.210426 CCGATTTCACTTAATTCGTGATTTTAG 57.790 33.333 10.27 3.94 40.70 1.85
4349 8795 9.967245 CGATTTCACTTAATTCGTGATTTTAGA 57.033 29.630 10.27 0.00 40.70 2.10
4352 8798 8.842358 TTCACTTAATTCGTGATTTTAGAGGT 57.158 30.769 10.27 0.00 40.70 3.85
4353 8799 8.475331 TCACTTAATTCGTGATTTTAGAGGTC 57.525 34.615 6.44 0.00 36.54 3.85
4354 8800 7.274904 TCACTTAATTCGTGATTTTAGAGGTCG 59.725 37.037 6.44 0.00 36.54 4.79
4355 8801 7.274904 CACTTAATTCGTGATTTTAGAGGTCGA 59.725 37.037 2.50 0.00 34.35 4.20
4356 8802 7.816031 ACTTAATTCGTGATTTTAGAGGTCGAA 59.184 33.333 0.00 0.00 39.43 3.71
4357 8803 6.404712 AATTCGTGATTTTAGAGGTCGAAC 57.595 37.500 0.00 0.00 38.32 3.95
4358 8804 4.508461 TCGTGATTTTAGAGGTCGAACA 57.492 40.909 1.87 0.00 0.00 3.18
4359 8805 4.873817 TCGTGATTTTAGAGGTCGAACAA 58.126 39.130 1.87 0.00 0.00 2.83
4360 8806 5.291178 TCGTGATTTTAGAGGTCGAACAAA 58.709 37.500 1.87 0.00 0.00 2.83
4361 8807 5.404366 TCGTGATTTTAGAGGTCGAACAAAG 59.596 40.000 1.87 0.00 0.00 2.77
4362 8808 5.404366 CGTGATTTTAGAGGTCGAACAAAGA 59.596 40.000 1.87 0.00 0.00 2.52
4363 8809 6.073980 CGTGATTTTAGAGGTCGAACAAAGAA 60.074 38.462 1.87 0.00 0.00 2.52
4364 8810 7.517734 CGTGATTTTAGAGGTCGAACAAAGAAA 60.518 37.037 1.87 0.00 0.00 2.52
4365 8811 8.126700 GTGATTTTAGAGGTCGAACAAAGAAAA 58.873 33.333 1.87 4.20 0.00 2.29
4366 8812 8.846211 TGATTTTAGAGGTCGAACAAAGAAAAT 58.154 29.630 1.87 8.94 0.00 1.82
4369 8815 8.665643 TTTAGAGGTCGAACAAAGAAAATACA 57.334 30.769 1.87 0.00 0.00 2.29
4370 8816 6.541111 AGAGGTCGAACAAAGAAAATACAC 57.459 37.500 1.87 0.00 0.00 2.90
4371 8817 5.469084 AGAGGTCGAACAAAGAAAATACACC 59.531 40.000 1.87 0.00 0.00 4.16
4372 8818 4.212636 AGGTCGAACAAAGAAAATACACCG 59.787 41.667 1.87 0.00 0.00 4.94
4373 8819 3.904234 GTCGAACAAAGAAAATACACCGC 59.096 43.478 0.00 0.00 0.00 5.68
4374 8820 3.560481 TCGAACAAAGAAAATACACCGCA 59.440 39.130 0.00 0.00 0.00 5.69
4375 8821 4.035324 TCGAACAAAGAAAATACACCGCAA 59.965 37.500 0.00 0.00 0.00 4.85
4376 8822 4.145756 CGAACAAAGAAAATACACCGCAAC 59.854 41.667 0.00 0.00 0.00 4.17
4377 8823 4.640789 ACAAAGAAAATACACCGCAACA 57.359 36.364 0.00 0.00 0.00 3.33
4378 8824 4.356289 ACAAAGAAAATACACCGCAACAC 58.644 39.130 0.00 0.00 0.00 3.32
4379 8825 3.636282 AAGAAAATACACCGCAACACC 57.364 42.857 0.00 0.00 0.00 4.16
4380 8826 2.858745 AGAAAATACACCGCAACACCT 58.141 42.857 0.00 0.00 0.00 4.00
4381 8827 2.812011 AGAAAATACACCGCAACACCTC 59.188 45.455 0.00 0.00 0.00 3.85
4382 8828 1.153353 AAATACACCGCAACACCTCG 58.847 50.000 0.00 0.00 0.00 4.63
4383 8829 0.034337 AATACACCGCAACACCTCGT 59.966 50.000 0.00 0.00 0.00 4.18
4384 8830 0.889994 ATACACCGCAACACCTCGTA 59.110 50.000 0.00 0.00 0.00 3.43
4385 8831 0.672889 TACACCGCAACACCTCGTAA 59.327 50.000 0.00 0.00 0.00 3.18
4386 8832 0.877213 ACACCGCAACACCTCGTAAC 60.877 55.000 0.00 0.00 0.00 2.50
4387 8833 0.876777 CACCGCAACACCTCGTAACA 60.877 55.000 0.00 0.00 0.00 2.41
4388 8834 0.877213 ACCGCAACACCTCGTAACAC 60.877 55.000 0.00 0.00 0.00 3.32
4389 8835 1.562575 CCGCAACACCTCGTAACACC 61.563 60.000 0.00 0.00 0.00 4.16
4390 8836 1.857364 GCAACACCTCGTAACACCG 59.143 57.895 0.00 0.00 0.00 4.94
4391 8837 1.857364 CAACACCTCGTAACACCGC 59.143 57.895 0.00 0.00 0.00 5.68
4392 8838 1.662446 AACACCTCGTAACACCGCG 60.662 57.895 0.00 0.00 0.00 6.46
4393 8839 2.049802 CACCTCGTAACACCGCGT 60.050 61.111 4.92 0.00 0.00 6.01
4394 8840 2.049802 ACCTCGTAACACCGCGTG 60.050 61.111 4.92 6.23 39.75 5.34
4395 8841 2.807895 CCTCGTAACACCGCGTGG 60.808 66.667 14.93 14.93 37.94 4.94
4406 8852 3.430862 CGCGTGGTGTGGATTGGG 61.431 66.667 0.00 0.00 0.00 4.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 2.548904 GGATACGATAGCAGTGAGACGT 59.451 50.000 0.00 0.00 42.67 4.34
84 85 8.470002 TGATCAAGGATGTAATGGATACGATAG 58.530 37.037 0.00 0.00 37.32 2.08
128 129 9.585099 AAAACGACACTATATAATACACGGAAA 57.415 29.630 0.00 0.00 0.00 3.13
157 158 0.954452 CACTGGAAAAGGCTCCACAC 59.046 55.000 0.00 0.00 40.71 3.82
162 163 1.878953 TCGTTCACTGGAAAAGGCTC 58.121 50.000 0.00 0.00 34.13 4.70
189 190 2.486592 GGGGGCATATTTTCCGTTATCG 59.513 50.000 0.00 0.00 0.00 2.92
193 194 2.499693 CAAAGGGGGCATATTTTCCGTT 59.500 45.455 0.00 0.00 0.00 4.44
195 196 2.383855 TCAAAGGGGGCATATTTTCCG 58.616 47.619 0.00 0.00 0.00 4.30
229 230 4.324936 GCAAAAGTACGCAAACAAACAAGA 59.675 37.500 0.00 0.00 0.00 3.02
379 380 0.747255 GTGCGGGCTAGATGAGAGAA 59.253 55.000 0.00 0.00 0.00 2.87
404 405 8.910351 AAGTAAGACTTGCTTAAATCTCAGTT 57.090 30.769 15.91 0.00 40.60 3.16
405 406 9.998106 TTAAGTAAGACTTGCTTAAATCTCAGT 57.002 29.630 26.58 4.58 42.29 3.41
407 408 9.998106 ACTTAAGTAAGACTTGCTTAAATCTCA 57.002 29.630 27.67 13.20 43.77 3.27
416 417 9.991906 TGTTATGTTACTTAAGTAAGACTTGCT 57.008 29.630 24.97 12.84 40.74 3.91
420 421 9.938280 TGCATGTTATGTTACTTAAGTAAGACT 57.062 29.630 24.97 16.33 40.74 3.24
423 424 9.988350 CCTTGCATGTTATGTTACTTAAGTAAG 57.012 33.333 24.97 13.48 40.74 2.34
424 425 8.952278 CCCTTGCATGTTATGTTACTTAAGTAA 58.048 33.333 21.52 21.52 38.10 2.24
425 426 8.322828 TCCCTTGCATGTTATGTTACTTAAGTA 58.677 33.333 11.38 11.38 0.00 2.24
426 427 7.172342 TCCCTTGCATGTTATGTTACTTAAGT 58.828 34.615 13.68 13.68 0.00 2.24
427 428 7.201732 CCTCCCTTGCATGTTATGTTACTTAAG 60.202 40.741 0.00 0.00 0.00 1.85
428 429 6.601613 CCTCCCTTGCATGTTATGTTACTTAA 59.398 38.462 0.00 0.00 0.00 1.85
429 430 6.069905 TCCTCCCTTGCATGTTATGTTACTTA 60.070 38.462 0.00 0.00 0.00 2.24
430 431 4.949856 CCTCCCTTGCATGTTATGTTACTT 59.050 41.667 0.00 0.00 0.00 2.24
431 432 4.227300 TCCTCCCTTGCATGTTATGTTACT 59.773 41.667 0.00 0.00 0.00 2.24
432 433 4.523083 TCCTCCCTTGCATGTTATGTTAC 58.477 43.478 0.00 0.00 0.00 2.50
433 434 4.853468 TCCTCCCTTGCATGTTATGTTA 57.147 40.909 0.00 0.00 0.00 2.41
434 435 3.737559 TCCTCCCTTGCATGTTATGTT 57.262 42.857 0.00 0.00 0.00 2.71
435 436 3.737559 TTCCTCCCTTGCATGTTATGT 57.262 42.857 0.00 0.00 0.00 2.29
436 437 4.142093 CCTTTTCCTCCCTTGCATGTTATG 60.142 45.833 0.00 0.00 0.00 1.90
437 438 4.026052 CCTTTTCCTCCCTTGCATGTTAT 58.974 43.478 0.00 0.00 0.00 1.89
438 439 3.181423 ACCTTTTCCTCCCTTGCATGTTA 60.181 43.478 0.00 0.00 0.00 2.41
439 440 2.250924 CCTTTTCCTCCCTTGCATGTT 58.749 47.619 0.00 0.00 0.00 2.71
440 441 1.147817 ACCTTTTCCTCCCTTGCATGT 59.852 47.619 0.00 0.00 0.00 3.21
441 442 1.928868 ACCTTTTCCTCCCTTGCATG 58.071 50.000 0.00 0.00 0.00 4.06
442 443 3.825908 TTACCTTTTCCTCCCTTGCAT 57.174 42.857 0.00 0.00 0.00 3.96
443 444 3.603965 TTTACCTTTTCCTCCCTTGCA 57.396 42.857 0.00 0.00 0.00 4.08
444 445 6.599356 TTATTTTACCTTTTCCTCCCTTGC 57.401 37.500 0.00 0.00 0.00 4.01
481 482 9.574458 CGTGAGATTTTATATTGAGATCCGTAT 57.426 33.333 0.00 0.00 0.00 3.06
482 483 8.027189 CCGTGAGATTTTATATTGAGATCCGTA 58.973 37.037 0.00 0.00 0.00 4.02
483 484 6.868864 CCGTGAGATTTTATATTGAGATCCGT 59.131 38.462 0.00 0.00 0.00 4.69
484 485 7.090808 TCCGTGAGATTTTATATTGAGATCCG 58.909 38.462 0.00 0.00 0.00 4.18
493 494 9.684448 CGATGCTATATCCGTGAGATTTTATAT 57.316 33.333 0.00 0.00 36.33 0.86
494 495 8.899771 TCGATGCTATATCCGTGAGATTTTATA 58.100 33.333 0.00 0.00 36.33 0.98
495 496 7.702772 GTCGATGCTATATCCGTGAGATTTTAT 59.297 37.037 0.00 0.00 36.33 1.40
496 497 7.027760 GTCGATGCTATATCCGTGAGATTTTA 58.972 38.462 0.00 0.00 36.33 1.52
497 498 5.864474 GTCGATGCTATATCCGTGAGATTTT 59.136 40.000 0.00 0.00 36.33 1.82
498 499 5.184096 AGTCGATGCTATATCCGTGAGATTT 59.816 40.000 0.00 0.00 36.33 2.17
499 500 4.702612 AGTCGATGCTATATCCGTGAGATT 59.297 41.667 0.00 0.00 36.33 2.40
500 501 4.095632 CAGTCGATGCTATATCCGTGAGAT 59.904 45.833 0.00 0.00 39.15 2.75
501 502 3.437049 CAGTCGATGCTATATCCGTGAGA 59.563 47.826 0.00 0.00 0.00 3.27
502 503 3.437049 TCAGTCGATGCTATATCCGTGAG 59.563 47.826 0.00 0.00 0.00 3.51
503 504 3.408634 TCAGTCGATGCTATATCCGTGA 58.591 45.455 0.00 0.00 0.00 4.35
504 505 3.437049 TCTCAGTCGATGCTATATCCGTG 59.563 47.826 0.00 0.00 0.00 4.94
505 506 3.437395 GTCTCAGTCGATGCTATATCCGT 59.563 47.826 0.00 0.00 0.00 4.69
506 507 3.687212 AGTCTCAGTCGATGCTATATCCG 59.313 47.826 0.00 0.00 0.00 4.18
507 508 5.637006 AAGTCTCAGTCGATGCTATATCC 57.363 43.478 0.00 0.00 0.00 2.59
508 509 7.585867 TGTTAAGTCTCAGTCGATGCTATATC 58.414 38.462 0.00 0.00 0.00 1.63
509 510 7.511959 TGTTAAGTCTCAGTCGATGCTATAT 57.488 36.000 0.00 0.00 0.00 0.86
510 511 6.937436 TGTTAAGTCTCAGTCGATGCTATA 57.063 37.500 0.00 0.00 0.00 1.31
511 512 5.836821 TGTTAAGTCTCAGTCGATGCTAT 57.163 39.130 0.00 0.00 0.00 2.97
512 513 5.638596 TTGTTAAGTCTCAGTCGATGCTA 57.361 39.130 0.00 0.00 0.00 3.49
513 514 4.521130 TTGTTAAGTCTCAGTCGATGCT 57.479 40.909 0.00 0.00 0.00 3.79
514 515 4.686554 ACTTTGTTAAGTCTCAGTCGATGC 59.313 41.667 0.00 0.00 40.60 3.91
537 538 2.619147 CTAAGTCTCAGTCGACCGAGA 58.381 52.381 24.28 24.28 35.93 4.04
538 539 1.062880 GCTAAGTCTCAGTCGACCGAG 59.937 57.143 20.59 20.59 34.46 4.63
539 540 1.085091 GCTAAGTCTCAGTCGACCGA 58.915 55.000 13.01 6.63 34.46 4.69
540 541 0.803117 TGCTAAGTCTCAGTCGACCG 59.197 55.000 13.01 1.05 34.46 4.79
541 542 2.488545 TCTTGCTAAGTCTCAGTCGACC 59.511 50.000 13.01 0.00 34.46 4.79
542 543 3.189702 AGTCTTGCTAAGTCTCAGTCGAC 59.810 47.826 7.70 7.70 0.00 4.20
543 544 3.189495 CAGTCTTGCTAAGTCTCAGTCGA 59.811 47.826 0.00 0.00 0.00 4.20
544 545 3.189495 TCAGTCTTGCTAAGTCTCAGTCG 59.811 47.826 0.00 0.00 0.00 4.18
545 546 4.775058 TCAGTCTTGCTAAGTCTCAGTC 57.225 45.455 0.00 0.00 0.00 3.51
546 547 6.842437 TTATCAGTCTTGCTAAGTCTCAGT 57.158 37.500 0.00 0.00 0.00 3.41
547 548 8.715191 AATTTATCAGTCTTGCTAAGTCTCAG 57.285 34.615 0.00 0.00 0.00 3.35
552 553 9.601217 ACGATAAATTTATCAGTCTTGCTAAGT 57.399 29.630 28.90 15.80 39.55 2.24
556 557 8.552034 GCTAACGATAAATTTATCAGTCTTGCT 58.448 33.333 28.90 17.33 39.55 3.91
557 558 8.552034 AGCTAACGATAAATTTATCAGTCTTGC 58.448 33.333 28.90 25.59 39.55 4.01
578 579 2.269940 AGGGCCTTTGAGAAGAGCTAA 58.730 47.619 0.00 0.00 34.71 3.09
594 595 3.954258 ACATATTTGCAAGAAGGTAGGGC 59.046 43.478 0.00 0.00 0.00 5.19
628 629 7.043192 CCTGAGCATTTCTTACAAAAACAACAG 60.043 37.037 0.00 0.00 0.00 3.16
631 632 5.752955 GCCTGAGCATTTCTTACAAAAACAA 59.247 36.000 0.00 0.00 39.53 2.83
669 670 6.928492 TCGGTTTATTTTACCACGACTTTAGT 59.072 34.615 0.00 0.00 35.31 2.24
685 686 2.936498 CGAAGGCTGTGATCGGTTTATT 59.064 45.455 0.00 0.00 33.15 1.40
687 688 2.004583 CGAAGGCTGTGATCGGTTTA 57.995 50.000 0.00 0.00 33.15 2.01
832 836 1.645710 TCTCCCCTCTTCAGAACCAC 58.354 55.000 0.00 0.00 0.00 4.16
834 838 2.261729 AGTTCTCCCCTCTTCAGAACC 58.738 52.381 7.30 0.00 44.85 3.62
854 859 4.265904 TGAGCATTTTCTCGTTGGTCTA 57.734 40.909 0.00 0.00 38.39 2.59
857 862 2.030805 GCTTGAGCATTTTCTCGTTGGT 60.031 45.455 0.00 0.00 41.59 3.67
874 879 2.358737 AAGTCCTTCGCCGGCTTG 60.359 61.111 26.68 10.37 0.00 4.01
883 888 6.329496 CAGAGACAAGTAGATCAAGTCCTTC 58.671 44.000 0.00 0.00 0.00 3.46
909 921 3.827302 AGTACAGAACCTGTGTCTGTAGG 59.173 47.826 13.17 0.00 45.01 3.18
940 958 2.695147 GGGAAGTTAGGCATTGGAATGG 59.305 50.000 1.67 0.00 36.90 3.16
1179 1203 6.127338 TGACATACCCTGAGTAGTGATTGAAG 60.127 42.308 0.00 0.00 33.42 3.02
1185 1209 3.014623 CGTGACATACCCTGAGTAGTGA 58.985 50.000 0.00 0.00 33.42 3.41
1194 1218 0.744874 CATCGGTCGTGACATACCCT 59.255 55.000 2.00 0.00 31.68 4.34
1200 1224 0.666274 GTTGCTCATCGGTCGTGACA 60.666 55.000 2.00 0.00 0.00 3.58
1218 1242 1.598130 GAACAGTGCCTTGCCGAGT 60.598 57.895 0.00 0.00 0.00 4.18
1579 1638 7.300991 AGCTATACATGCTTCCATTGCTATGG 61.301 42.308 19.80 19.80 41.85 2.74
1684 1750 4.503296 CCCGGTGGATCTATTTCGAAAGAT 60.503 45.833 16.80 13.83 41.60 2.40
1738 1804 6.656693 ACTGTTTGGATAGAAGAGGAAACATG 59.343 38.462 0.00 0.00 33.96 3.21
1774 1842 6.152661 TGGAATTGTCATGTTATCTTGGGAAC 59.847 38.462 0.00 0.00 0.00 3.62
1794 1862 3.101437 TGCTGCAAAGGATGAATGGAAT 58.899 40.909 0.00 0.00 0.00 3.01
1797 1865 1.546923 TGTGCTGCAAAGGATGAATGG 59.453 47.619 2.77 0.00 0.00 3.16
1909 1977 6.641314 CCTATTGTCTATGAATACGGTGACAC 59.359 42.308 0.00 0.00 34.73 3.67
1912 1980 6.776116 ACTCCTATTGTCTATGAATACGGTGA 59.224 38.462 0.00 0.00 0.00 4.02
1958 2130 8.836413 CGGCAGGAAAATTAGAATCTATTGTAA 58.164 33.333 0.00 0.00 31.36 2.41
1959 2131 7.041372 GCGGCAGGAAAATTAGAATCTATTGTA 60.041 37.037 0.00 0.00 0.00 2.41
1960 2132 6.238759 GCGGCAGGAAAATTAGAATCTATTGT 60.239 38.462 0.00 0.00 0.00 2.71
1962 2134 6.064717 AGCGGCAGGAAAATTAGAATCTATT 58.935 36.000 1.45 0.00 0.00 1.73
1963 2135 5.625150 AGCGGCAGGAAAATTAGAATCTAT 58.375 37.500 1.45 0.00 0.00 1.98
1964 2136 5.036117 AGCGGCAGGAAAATTAGAATCTA 57.964 39.130 1.45 0.00 0.00 1.98
1965 2137 3.879892 GAGCGGCAGGAAAATTAGAATCT 59.120 43.478 1.45 0.00 0.00 2.40
1966 2138 3.303395 CGAGCGGCAGGAAAATTAGAATC 60.303 47.826 1.45 0.00 0.00 2.52
1976 2148 4.873129 GCGATCGAGCGGCAGGAA 62.873 66.667 25.73 0.00 0.00 3.36
1979 2151 2.428236 CTAGCGATCGAGCGGCAG 60.428 66.667 25.73 12.33 43.00 4.85
1984 2156 2.031069 TGTAATGTCCTAGCGATCGAGC 60.031 50.000 21.57 1.03 37.41 5.03
2057 2229 7.755373 GGATGCCTTTGAAGTTTATGTAGTTTC 59.245 37.037 0.00 0.00 0.00 2.78
2108 2284 1.378531 TGCGATGGTGAAATGGTAGC 58.621 50.000 0.00 0.00 0.00 3.58
2109 2285 3.378112 ACATTGCGATGGTGAAATGGTAG 59.622 43.478 18.31 0.00 37.60 3.18
2110 2286 3.351740 ACATTGCGATGGTGAAATGGTA 58.648 40.909 18.31 0.00 37.60 3.25
2111 2287 2.164219 GACATTGCGATGGTGAAATGGT 59.836 45.455 18.31 0.00 37.60 3.55
2126 2306 4.670992 GCATCAGCACTTGTGTAGACATTG 60.671 45.833 0.00 0.00 41.58 2.82
2128 2308 3.005554 GCATCAGCACTTGTGTAGACAT 58.994 45.455 0.00 0.00 41.58 3.06
2129 2309 2.037641 AGCATCAGCACTTGTGTAGACA 59.962 45.455 2.61 0.00 45.49 3.41
2130 2310 2.693069 AGCATCAGCACTTGTGTAGAC 58.307 47.619 2.61 0.00 45.49 2.59
2132 2312 4.452114 TGTTTAGCATCAGCACTTGTGTAG 59.548 41.667 2.61 0.00 45.49 2.74
2133 2313 4.384940 TGTTTAGCATCAGCACTTGTGTA 58.615 39.130 2.61 0.00 45.49 2.90
2134 2314 3.213506 TGTTTAGCATCAGCACTTGTGT 58.786 40.909 2.61 0.00 45.49 3.72
2135 2315 3.902261 TGTTTAGCATCAGCACTTGTG 57.098 42.857 0.00 0.00 45.49 3.33
2137 2317 5.921976 TCATTTTGTTTAGCATCAGCACTTG 59.078 36.000 0.00 0.00 45.49 3.16
2138 2318 6.088016 TCATTTTGTTTAGCATCAGCACTT 57.912 33.333 0.00 0.00 45.49 3.16
2139 2319 5.710513 TCATTTTGTTTAGCATCAGCACT 57.289 34.783 0.00 0.00 45.49 4.40
2140 2320 5.922544 ACTTCATTTTGTTTAGCATCAGCAC 59.077 36.000 0.00 0.00 45.49 4.40
2142 2322 8.519492 TTTACTTCATTTTGTTTAGCATCAGC 57.481 30.769 0.00 0.00 42.56 4.26
2143 2323 9.897744 TCTTTACTTCATTTTGTTTAGCATCAG 57.102 29.630 0.00 0.00 0.00 2.90
2147 2327 9.677567 GTGATCTTTACTTCATTTTGTTTAGCA 57.322 29.630 0.00 0.00 0.00 3.49
2148 2328 9.899226 AGTGATCTTTACTTCATTTTGTTTAGC 57.101 29.630 0.00 0.00 0.00 3.09
2175 2378 9.932207 TCTGAAAATAAAAACATGATCAATGCT 57.068 25.926 0.00 0.00 40.22 3.79
2192 2395 2.198406 CGCGTTCCCGATCTGAAAATA 58.802 47.619 0.00 0.00 35.63 1.40
2193 2396 1.006832 CGCGTTCCCGATCTGAAAAT 58.993 50.000 0.00 0.00 35.63 1.82
2221 2434 1.451504 CTGCAAGTCTGTGTCCCCA 59.548 57.895 0.00 0.00 0.00 4.96
2503 2722 1.272781 CTGAAGCTCTTTACGCGGAG 58.727 55.000 12.47 8.53 0.00 4.63
2506 2725 1.014044 TGGCTGAAGCTCTTTACGCG 61.014 55.000 3.53 3.53 41.70 6.01
2509 2728 5.157067 GTGAAAATGGCTGAAGCTCTTTAC 58.843 41.667 1.74 0.00 41.70 2.01
2514 2733 2.163211 GAGGTGAAAATGGCTGAAGCTC 59.837 50.000 1.74 0.00 41.70 4.09
2517 2736 1.470098 CGGAGGTGAAAATGGCTGAAG 59.530 52.381 0.00 0.00 0.00 3.02
2531 2750 2.501723 AGCAGATTAATCACACGGAGGT 59.498 45.455 17.56 1.71 0.00 3.85
2532 2751 3.126831 GAGCAGATTAATCACACGGAGG 58.873 50.000 17.56 0.00 0.00 4.30
2896 3201 0.102300 ACAAAACGCAAAGGGTCAGC 59.898 50.000 0.00 0.00 0.00 4.26
2901 3206 1.064952 ACGAAGACAAAACGCAAAGGG 59.935 47.619 0.00 0.00 0.00 3.95
2902 3207 2.031683 AGACGAAGACAAAACGCAAAGG 59.968 45.455 0.00 0.00 0.00 3.11
2903 3208 3.319238 AGACGAAGACAAAACGCAAAG 57.681 42.857 0.00 0.00 0.00 2.77
2904 3209 5.462729 TGTATAGACGAAGACAAAACGCAAA 59.537 36.000 0.00 0.00 0.00 3.68
2906 3211 4.548494 TGTATAGACGAAGACAAAACGCA 58.452 39.130 0.00 0.00 0.00 5.24
2907 3212 5.118203 ACTTGTATAGACGAAGACAAAACGC 59.882 40.000 0.00 0.00 31.76 4.84
2908 3213 6.686130 ACTTGTATAGACGAAGACAAAACG 57.314 37.500 0.00 0.00 31.76 3.60
2950 3266 4.819630 AGAGCAACGGAAAATGACACTTAA 59.180 37.500 0.00 0.00 0.00 1.85
2951 3267 4.385825 AGAGCAACGGAAAATGACACTTA 58.614 39.130 0.00 0.00 0.00 2.24
2952 3268 3.214328 AGAGCAACGGAAAATGACACTT 58.786 40.909 0.00 0.00 0.00 3.16
3059 3379 2.362369 CCATGGCGACCAGTCCTCT 61.362 63.158 0.00 0.00 36.75 3.69
3143 3607 1.204146 GGAGGCTACTGGTTGATGGA 58.796 55.000 0.00 0.00 0.00 3.41
3149 3613 1.710809 ACCAATTGGAGGCTACTGGTT 59.289 47.619 31.22 0.27 33.37 3.67
3179 3643 9.013229 AGATAGTGTCATAAGATCTGATCAGAC 57.987 37.037 27.37 19.57 40.75 3.51
3183 3647 8.791675 TGTGAGATAGTGTCATAAGATCTGATC 58.208 37.037 9.65 9.65 0.00 2.92
3222 3696 4.584029 ATGCATAAGAACAAGAACGTCG 57.416 40.909 0.00 0.00 0.00 5.12
3242 3716 1.836802 ACCAACCTGCAACCAACAAAT 59.163 42.857 0.00 0.00 0.00 2.32
3361 3836 2.035442 GTTGGCGAGGAAGTGCTCC 61.035 63.158 0.00 0.00 45.81 4.70
3394 3869 2.774809 GGATCTGGACTAGAAGGGCTTT 59.225 50.000 0.00 0.00 39.30 3.51
3407 3882 4.442706 GCGTATTTTTCTCTGGATCTGGA 58.557 43.478 0.00 0.00 0.00 3.86
3408 3883 3.561725 GGCGTATTTTTCTCTGGATCTGG 59.438 47.826 0.00 0.00 0.00 3.86
3409 3884 4.034510 GTGGCGTATTTTTCTCTGGATCTG 59.965 45.833 0.00 0.00 0.00 2.90
3411 3886 3.001330 CGTGGCGTATTTTTCTCTGGATC 59.999 47.826 0.00 0.00 0.00 3.36
3413 3888 2.028839 TCGTGGCGTATTTTTCTCTGGA 60.029 45.455 0.00 0.00 0.00 3.86
3415 3890 2.993899 ACTCGTGGCGTATTTTTCTCTG 59.006 45.455 0.00 0.00 0.00 3.35
3416 3891 3.314541 ACTCGTGGCGTATTTTTCTCT 57.685 42.857 0.00 0.00 0.00 3.10
3417 3892 3.732943 CAACTCGTGGCGTATTTTTCTC 58.267 45.455 0.00 0.00 0.00 2.87
3419 3894 2.239201 GCAACTCGTGGCGTATTTTTC 58.761 47.619 0.00 0.00 0.00 2.29
3425 3900 2.731721 CGTGCAACTCGTGGCGTA 60.732 61.111 0.00 0.00 31.75 4.42
3429 3904 1.157870 AGGAAACGTGCAACTCGTGG 61.158 55.000 1.27 0.00 41.38 4.94
3435 3910 4.464112 GTCTTATTGAGGAAACGTGCAAC 58.536 43.478 0.00 0.00 0.00 4.17
3437 3912 3.071479 GGTCTTATTGAGGAAACGTGCA 58.929 45.455 0.00 0.00 0.00 4.57
3469 3944 3.324268 ACAACCATGAAATCAACCATGCA 59.676 39.130 0.00 0.00 38.95 3.96
3470 3945 3.680937 CACAACCATGAAATCAACCATGC 59.319 43.478 0.00 0.00 38.95 4.06
3471 3946 4.885413 ACACAACCATGAAATCAACCATG 58.115 39.130 0.00 0.00 39.72 3.66
3472 3947 5.549742 AACACAACCATGAAATCAACCAT 57.450 34.783 0.00 0.00 0.00 3.55
3502 3977 1.380403 GCAGCGTAGAGAGCAGAGGA 61.380 60.000 0.00 0.00 37.01 3.71
3503 3978 1.065600 GCAGCGTAGAGAGCAGAGG 59.934 63.158 0.00 0.00 37.01 3.69
3524 4004 3.124560 GGCCTGCTCGATTAGAAACTAC 58.875 50.000 0.00 0.00 0.00 2.73
3546 4026 6.899089 TCCACAATGAAATCCAATCTAGCTA 58.101 36.000 0.00 0.00 0.00 3.32
3547 4027 5.759059 TCCACAATGAAATCCAATCTAGCT 58.241 37.500 0.00 0.00 0.00 3.32
3548 4028 6.645790 ATCCACAATGAAATCCAATCTAGC 57.354 37.500 0.00 0.00 0.00 3.42
3553 4033 7.308710 GCAACAAAATCCACAATGAAATCCAAT 60.309 33.333 0.00 0.00 0.00 3.16
3554 4034 6.017275 GCAACAAAATCCACAATGAAATCCAA 60.017 34.615 0.00 0.00 0.00 3.53
3592 4095 2.496899 AGCCAGTAAACACCATCCAG 57.503 50.000 0.00 0.00 0.00 3.86
3597 4100 2.869101 TGCATAGCCAGTAAACACCA 57.131 45.000 0.00 0.00 0.00 4.17
3615 4118 1.202256 GCATGCCCGCATCATCATATG 60.202 52.381 6.36 0.00 33.90 1.78
3616 4119 1.100510 GCATGCCCGCATCATCATAT 58.899 50.000 6.36 0.00 33.90 1.78
3617 4120 1.300266 CGCATGCCCGCATCATCATA 61.300 55.000 13.15 0.00 33.90 2.15
3618 4121 2.622962 CGCATGCCCGCATCATCAT 61.623 57.895 13.15 0.00 33.90 2.45
3619 4122 3.281395 CGCATGCCCGCATCATCA 61.281 61.111 13.15 0.00 33.90 3.07
3620 4123 2.062361 TTTCGCATGCCCGCATCATC 62.062 55.000 13.15 0.00 33.90 2.92
3646 4149 2.137810 ACGGTGGATGGGTTTATTGG 57.862 50.000 0.00 0.00 0.00 3.16
3662 4176 6.521821 CACGTTGGAATTAATGTTTAGAACGG 59.478 38.462 0.00 0.00 38.31 4.44
3786 4306 1.341209 GTTCTTTTGCCTCCACCTTGG 59.659 52.381 0.00 0.00 39.43 3.61
3792 4312 1.172180 CGGCTGTTCTTTTGCCTCCA 61.172 55.000 0.00 0.00 44.09 3.86
3827 4347 0.179073 AAAGCGATCGGTATGCTGCT 60.179 50.000 21.57 0.39 39.30 4.24
3900 4455 0.669318 ATGGCATCGTGTTCGTTCGT 60.669 50.000 0.00 0.00 38.33 3.85
3901 4456 0.247262 CATGGCATCGTGTTCGTTCG 60.247 55.000 0.00 0.00 38.33 3.95
3902 4457 0.796312 ACATGGCATCGTGTTCGTTC 59.204 50.000 0.00 0.00 39.93 3.95
3903 4458 0.516877 CACATGGCATCGTGTTCGTT 59.483 50.000 16.78 0.00 40.85 3.85
3931 4486 5.991606 AGAAATCACGTCAGAATTCACTTCA 59.008 36.000 8.44 0.00 36.24 3.02
3935 4495 4.142816 CCCAGAAATCACGTCAGAATTCAC 60.143 45.833 8.44 0.00 31.39 3.18
3947 4507 1.305930 GCCGACACCCCAGAAATCAC 61.306 60.000 0.00 0.00 0.00 3.06
3950 4510 2.046314 CGCCGACACCCCAGAAAT 60.046 61.111 0.00 0.00 0.00 2.17
3971 7509 5.548406 GGTAGATTGATATGGTAAAGCCGT 58.452 41.667 0.00 0.00 41.21 5.68
4090 8523 1.489560 CGGGAGAAGGGGAACAACCT 61.490 60.000 0.00 0.00 40.96 3.50
4187 8620 2.103042 GCCATGTGAGACGACTGGC 61.103 63.158 0.00 0.00 44.91 4.85
4188 8621 0.817654 TAGCCATGTGAGACGACTGG 59.182 55.000 0.00 0.00 0.00 4.00
4233 8669 3.412386 TCGTGATCTGTCTTCAGTCTGA 58.588 45.455 0.00 0.00 41.91 3.27
4338 8784 5.404366 TCTTTGTTCGACCTCTAAAATCACG 59.596 40.000 0.00 0.00 0.00 4.35
4348 8794 5.614013 CGGTGTATTTTCTTTGTTCGACCTC 60.614 44.000 0.00 0.00 0.00 3.85
4349 8795 4.212636 CGGTGTATTTTCTTTGTTCGACCT 59.787 41.667 0.00 0.00 0.00 3.85
4350 8796 4.460505 CGGTGTATTTTCTTTGTTCGACC 58.539 43.478 0.00 0.00 0.00 4.79
4351 8797 3.904234 GCGGTGTATTTTCTTTGTTCGAC 59.096 43.478 0.00 0.00 0.00 4.20
4352 8798 3.560481 TGCGGTGTATTTTCTTTGTTCGA 59.440 39.130 0.00 0.00 0.00 3.71
4353 8799 3.879427 TGCGGTGTATTTTCTTTGTTCG 58.121 40.909 0.00 0.00 0.00 3.95
4354 8800 5.038033 TGTTGCGGTGTATTTTCTTTGTTC 58.962 37.500 0.00 0.00 0.00 3.18
4355 8801 4.801516 GTGTTGCGGTGTATTTTCTTTGTT 59.198 37.500 0.00 0.00 0.00 2.83
4356 8802 4.356289 GTGTTGCGGTGTATTTTCTTTGT 58.644 39.130 0.00 0.00 0.00 2.83
4357 8803 3.733727 GGTGTTGCGGTGTATTTTCTTTG 59.266 43.478 0.00 0.00 0.00 2.77
4358 8804 3.634910 AGGTGTTGCGGTGTATTTTCTTT 59.365 39.130 0.00 0.00 0.00 2.52
4359 8805 3.219281 AGGTGTTGCGGTGTATTTTCTT 58.781 40.909 0.00 0.00 0.00 2.52
4360 8806 2.812011 GAGGTGTTGCGGTGTATTTTCT 59.188 45.455 0.00 0.00 0.00 2.52
4361 8807 2.412325 CGAGGTGTTGCGGTGTATTTTC 60.412 50.000 0.00 0.00 0.00 2.29
4362 8808 1.533731 CGAGGTGTTGCGGTGTATTTT 59.466 47.619 0.00 0.00 0.00 1.82
4363 8809 1.153353 CGAGGTGTTGCGGTGTATTT 58.847 50.000 0.00 0.00 0.00 1.40
4364 8810 0.034337 ACGAGGTGTTGCGGTGTATT 59.966 50.000 0.00 0.00 0.00 1.89
4365 8811 0.889994 TACGAGGTGTTGCGGTGTAT 59.110 50.000 0.00 0.00 0.00 2.29
4366 8812 0.672889 TTACGAGGTGTTGCGGTGTA 59.327 50.000 0.00 0.00 0.00 2.90
4367 8813 0.877213 GTTACGAGGTGTTGCGGTGT 60.877 55.000 0.00 0.00 0.00 4.16
4368 8814 0.876777 TGTTACGAGGTGTTGCGGTG 60.877 55.000 0.00 0.00 0.00 4.94
4369 8815 0.877213 GTGTTACGAGGTGTTGCGGT 60.877 55.000 0.00 0.00 0.00 5.68
4370 8816 1.562575 GGTGTTACGAGGTGTTGCGG 61.563 60.000 0.00 0.00 0.00 5.69
4371 8817 1.857364 GGTGTTACGAGGTGTTGCG 59.143 57.895 0.00 0.00 0.00 4.85
4372 8818 1.857364 CGGTGTTACGAGGTGTTGC 59.143 57.895 0.00 0.00 35.47 4.17
4373 8819 1.857364 GCGGTGTTACGAGGTGTTG 59.143 57.895 0.00 0.00 35.47 3.33
4374 8820 1.662446 CGCGGTGTTACGAGGTGTT 60.662 57.895 0.00 0.00 35.47 3.32
4375 8821 2.049802 CGCGGTGTTACGAGGTGT 60.050 61.111 0.00 0.00 35.47 4.16
4376 8822 2.049802 ACGCGGTGTTACGAGGTG 60.050 61.111 12.47 0.00 37.99 4.00
4377 8823 2.049802 CACGCGGTGTTACGAGGT 60.050 61.111 12.47 0.00 37.99 3.85
4378 8824 2.807895 CCACGCGGTGTTACGAGG 60.808 66.667 12.47 0.00 37.99 4.63
4379 8825 2.049802 ACCACGCGGTGTTACGAG 60.050 61.111 12.47 0.00 46.79 4.18
4388 8834 3.430862 CCAATCCACACCACGCGG 61.431 66.667 12.47 0.00 38.77 6.46
4389 8835 3.430862 CCCAATCCACACCACGCG 61.431 66.667 3.53 3.53 0.00 6.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.