Multiple sequence alignment - TraesCS1B01G216600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G216600 chr1B 100.000 4449 0 0 653 5101 392461097 392456649 0.000000e+00 8216.0
1 TraesCS1B01G216600 chr1B 100.000 182 0 0 1 182 392461749 392461568 2.280000e-88 337.0
2 TraesCS1B01G216600 chr1B 95.833 48 2 0 2742 2789 343651081 343651034 1.520000e-10 78.7
3 TraesCS1B01G216600 chr1D 92.232 2536 87 30 1631 4108 291539961 291537478 0.000000e+00 3491.0
4 TraesCS1B01G216600 chr1D 91.138 914 50 18 653 1554 291540999 291540105 0.000000e+00 1210.0
5 TraesCS1B01G216600 chr1D 93.706 286 12 3 4113 4397 291537436 291537156 1.700000e-114 424.0
6 TraesCS1B01G216600 chr1D 93.750 192 2 1 1 182 291541207 291541016 3.890000e-71 279.0
7 TraesCS1B01G216600 chr1D 82.692 208 35 1 4397 4603 11235128 11235335 3.140000e-42 183.0
8 TraesCS1B01G216600 chr1D 90.476 63 6 0 5037 5099 487436859 487436797 3.270000e-12 84.2
9 TraesCS1B01G216600 chr1D 93.750 48 3 0 2742 2789 269990668 269990621 7.080000e-09 73.1
10 TraesCS1B01G216600 chr1D 100.000 28 0 0 2976 3003 426920657 426920684 9.000000e-03 52.8
11 TraesCS1B01G216600 chr1A 91.777 1289 73 19 3132 4397 363637982 363636704 0.000000e+00 1762.0
12 TraesCS1B01G216600 chr1A 89.777 1213 54 25 1640 2800 363639886 363638692 0.000000e+00 1489.0
13 TraesCS1B01G216600 chr1A 91.544 816 39 12 758 1554 363640844 363640040 0.000000e+00 1098.0
14 TraesCS1B01G216600 chr1A 85.806 310 40 4 4397 4704 363636673 363636366 4.930000e-85 326.0
15 TraesCS1B01G216600 chr1A 94.652 187 5 1 1 182 363641353 363641167 8.360000e-73 285.0
16 TraesCS1B01G216600 chr1A 85.106 188 18 3 4696 4873 363636194 363636007 3.140000e-42 183.0
17 TraesCS1B01G216600 chr1A 87.368 95 7 1 2823 2917 363638704 363638615 2.510000e-18 104.0
18 TraesCS1B01G216600 chr1A 100.000 33 0 0 653 685 363641150 363641118 1.530000e-05 62.1
19 TraesCS1B01G216600 chr1A 100.000 29 0 0 2972 3000 380265005 380265033 3.000000e-03 54.7
20 TraesCS1B01G216600 chr7D 78.539 438 80 12 4397 4825 5349358 5348926 5.030000e-70 276.0
21 TraesCS1B01G216600 chr7D 100.000 28 0 0 2975 3002 628538551 628538524 9.000000e-03 52.8
22 TraesCS1B01G216600 chr3B 78.910 422 75 10 4397 4811 699268343 699268757 1.810000e-69 274.0
23 TraesCS1B01G216600 chr3B 80.508 236 45 1 4397 4631 797128485 797128250 4.060000e-41 180.0
24 TraesCS1B01G216600 chr3B 89.855 69 7 0 5031 5099 713048017 713048085 7.030000e-14 89.8
25 TraesCS1B01G216600 chr3B 78.014 141 30 1 4464 4603 637024214 637024074 2.530000e-13 87.9
26 TraesCS1B01G216600 chr4A 84.472 161 21 4 4398 4556 738729487 738729329 6.840000e-34 156.0
27 TraesCS1B01G216600 chrUn 76.471 221 42 9 4389 4603 12319025 12319241 1.500000e-20 111.0
28 TraesCS1B01G216600 chrUn 75.847 236 32 17 4870 5099 265419428 265419212 4.200000e-16 97.1
29 TraesCS1B01G216600 chrUn 100.000 28 0 0 2976 3003 86842432 86842405 9.000000e-03 52.8
30 TraesCS1B01G216600 chr6B 88.636 88 9 1 5012 5099 130296183 130296097 6.980000e-19 106.0
31 TraesCS1B01G216600 chr7B 78.261 161 31 4 4446 4603 125947023 125947182 3.250000e-17 100.0
32 TraesCS1B01G216600 chr7B 89.855 69 7 0 5031 5099 339199533 339199465 7.030000e-14 89.8
33 TraesCS1B01G216600 chr7B 89.855 69 7 0 5031 5099 727622154 727622086 7.030000e-14 89.8
34 TraesCS1B01G216600 chr5D 76.068 234 26 20 4873 5099 75720627 75720417 1.510000e-15 95.3
35 TraesCS1B01G216600 chr2B 92.424 66 5 0 5036 5101 216966804 216966869 1.510000e-15 95.3
36 TraesCS1B01G216600 chr4B 86.207 87 11 1 5013 5099 464129957 464129872 5.440000e-15 93.5
37 TraesCS1B01G216600 chr4B 100.000 29 0 0 2976 3004 163901588 163901616 3.000000e-03 54.7
38 TraesCS1B01G216600 chr3A 100.000 28 0 0 2740 2767 727485166 727485139 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G216600 chr1B 392456649 392461749 5100 True 4276.5000 8216 100.00000 1 5101 2 chr1B.!!$R2 5100
1 TraesCS1B01G216600 chr1D 291537156 291541207 4051 True 1351.0000 3491 92.70650 1 4397 4 chr1D.!!$R3 4396
2 TraesCS1B01G216600 chr1A 363636007 363641353 5346 True 663.6375 1762 90.75375 1 4873 8 chr1A.!!$R1 4872

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
929 1141 0.108138 GTAGTGTGCTGCCTGGTAGG 60.108 60.0 13.86 0.00 38.8 3.18 F
1584 1825 0.179006 TAACTGTGTGTGCATGCCCA 60.179 50.0 16.68 7.09 0.0 5.36 F
2814 3179 0.036164 ATAAGCAAGTGTCACCCGCA 59.964 50.0 14.68 0.00 0.0 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1751 2074 0.036732 TTAGAAGTGTGCCTGCCAGG 59.963 55.0 6.32 6.32 38.8 4.45 R
3042 3779 0.105709 TGAGTGGTGAGGTGAGGTGA 60.106 55.0 0.00 0.00 0.0 4.02 R
4784 5857 0.108138 CTCCGAAACTCCGATGGCTT 60.108 55.0 0.00 0.00 0.0 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 2.481952 GGAACACATTCTGCAGTGAGTC 59.518 50.000 14.67 8.33 39.03 3.36
175 186 5.006386 CCTCTGCCCCAATCTCATAATTAC 58.994 45.833 0.00 0.00 0.00 1.89
692 703 1.134128 TGAGCAGCTGTTTTGTCTCCA 60.134 47.619 16.64 0.00 0.00 3.86
710 721 3.817647 CTCCAACCTTTTGTCTCTTCCTG 59.182 47.826 0.00 0.00 0.00 3.86
734 751 0.694783 TCCCCCTCGCTCTCTCTCTA 60.695 60.000 0.00 0.00 0.00 2.43
743 760 3.258372 TCGCTCTCTCTCTATCTCTCTCC 59.742 52.174 0.00 0.00 0.00 3.71
744 761 3.617531 CGCTCTCTCTCTATCTCTCTCCC 60.618 56.522 0.00 0.00 0.00 4.30
745 762 3.584848 GCTCTCTCTCTATCTCTCTCCCT 59.415 52.174 0.00 0.00 0.00 4.20
746 763 4.323104 GCTCTCTCTCTATCTCTCTCCCTC 60.323 54.167 0.00 0.00 0.00 4.30
747 764 4.168101 TCTCTCTCTATCTCTCTCCCTCC 58.832 52.174 0.00 0.00 0.00 4.30
748 765 4.140447 TCTCTCTCTATCTCTCTCCCTCCT 60.140 50.000 0.00 0.00 0.00 3.69
749 766 4.168101 TCTCTCTATCTCTCTCCCTCCTC 58.832 52.174 0.00 0.00 0.00 3.71
750 767 4.140447 TCTCTCTATCTCTCTCCCTCCTCT 60.140 50.000 0.00 0.00 0.00 3.69
751 768 3.909995 TCTCTATCTCTCTCCCTCCTCTG 59.090 52.174 0.00 0.00 0.00 3.35
914 1126 6.099125 TCTGCATAGACTAGAGTGAGAGTAGT 59.901 42.308 0.00 0.00 0.00 2.73
929 1141 0.108138 GTAGTGTGCTGCCTGGTAGG 60.108 60.000 13.86 0.00 38.80 3.18
930 1142 0.252057 TAGTGTGCTGCCTGGTAGGA 60.252 55.000 13.86 8.02 37.67 2.94
931 1143 0.911525 AGTGTGCTGCCTGGTAGGAT 60.912 55.000 13.86 0.00 37.67 3.24
932 1144 0.830648 GTGTGCTGCCTGGTAGGATA 59.169 55.000 13.86 6.28 37.67 2.59
933 1145 1.123077 TGTGCTGCCTGGTAGGATAG 58.877 55.000 13.86 0.00 37.67 2.08
934 1146 0.394565 GTGCTGCCTGGTAGGATAGG 59.605 60.000 13.86 0.00 37.67 2.57
975 1187 3.257873 TCTGAAGAGTGAAGAAGCCAGAG 59.742 47.826 0.00 0.00 0.00 3.35
980 1192 3.063485 GAGTGAAGAAGCCAGAGTTGTC 58.937 50.000 0.00 0.00 0.00 3.18
1061 1278 0.687354 AGGCAGTACAACAGGTCCAG 59.313 55.000 0.00 0.00 0.00 3.86
1068 1285 2.450502 AACAGGTCCAGGGTGCCT 60.451 61.111 0.00 0.00 0.00 4.75
1071 1288 4.316823 AGGTCCAGGGTGCCTCGA 62.317 66.667 0.00 0.00 0.00 4.04
1089 1306 2.105128 CTGAGATGGACGCCCGAC 59.895 66.667 0.00 0.00 34.29 4.79
1215 1443 5.220284 GCTTTCTCTCTTGTTTTTGTTGTGC 60.220 40.000 0.00 0.00 0.00 4.57
1300 1532 1.644337 TCAGGGGCTACACCTAAGAGA 59.356 52.381 0.00 0.00 36.32 3.10
1389 1621 3.885777 GCTTGACGATGCTTACTGC 57.114 52.632 0.00 0.00 43.25 4.40
1419 1651 4.095483 GTGTGCAATGTTATCCTCTCTTGG 59.905 45.833 0.00 0.00 0.00 3.61
1435 1667 4.041567 TCTCTTGGTGTGTGGTTGATATGT 59.958 41.667 0.00 0.00 0.00 2.29
1436 1668 4.724399 TCTTGGTGTGTGGTTGATATGTT 58.276 39.130 0.00 0.00 0.00 2.71
1475 1713 5.745312 AACAGATGTACAGGAACATGAGA 57.255 39.130 0.00 0.00 40.17 3.27
1504 1742 4.877823 TGATCTTGACATGATGCAAGGTAC 59.122 41.667 20.99 15.28 41.31 3.34
1507 1745 1.338579 TGACATGATGCAAGGTACGCA 60.339 47.619 0.00 0.00 44.94 5.24
1508 1746 1.328680 GACATGATGCAAGGTACGCAG 59.671 52.381 0.00 0.00 43.88 5.18
1528 1769 8.172352 ACGCAGTAATATGAGAAGATTAGTCT 57.828 34.615 0.00 0.00 41.94 3.24
1530 1771 8.910666 CGCAGTAATATGAGAAGATTAGTCTTG 58.089 37.037 5.06 0.00 44.57 3.02
1536 1777 9.829507 AATATGAGAAGATTAGTCTTGTTCCTG 57.170 33.333 5.06 0.00 44.57 3.86
1550 1791 7.335422 AGTCTTGTTCCTGTAATCATCATCAAC 59.665 37.037 0.00 0.00 0.00 3.18
1554 1795 8.408043 TGTTCCTGTAATCATCATCAACTTTT 57.592 30.769 0.00 0.00 0.00 2.27
1555 1796 8.859090 TGTTCCTGTAATCATCATCAACTTTTT 58.141 29.630 0.00 0.00 0.00 1.94
1578 1819 9.660180 TTTTATATCTGTATAACTGTGTGTGCA 57.340 29.630 0.00 0.00 33.60 4.57
1579 1820 9.830975 TTTATATCTGTATAACTGTGTGTGCAT 57.169 29.630 0.00 0.00 33.60 3.96
1582 1823 2.746904 TGTATAACTGTGTGTGCATGCC 59.253 45.455 16.68 7.25 0.00 4.40
1583 1824 1.176527 ATAACTGTGTGTGCATGCCC 58.823 50.000 16.68 3.59 0.00 5.36
1584 1825 0.179006 TAACTGTGTGTGCATGCCCA 60.179 50.000 16.68 7.09 0.00 5.36
1587 1828 1.152798 TGTGTGTGCATGCCCAAGA 60.153 52.632 16.68 0.00 0.00 3.02
1588 1829 0.540133 TGTGTGTGCATGCCCAAGAT 60.540 50.000 16.68 0.00 0.00 2.40
1589 1830 1.271817 TGTGTGTGCATGCCCAAGATA 60.272 47.619 16.68 0.00 0.00 1.98
1590 1831 1.818060 GTGTGTGCATGCCCAAGATAA 59.182 47.619 16.68 0.00 0.00 1.75
1592 1833 2.427812 TGTGTGCATGCCCAAGATAATG 59.572 45.455 16.68 0.00 0.00 1.90
1594 1835 2.427812 TGTGCATGCCCAAGATAATGTG 59.572 45.455 16.68 0.00 0.00 3.21
1597 1838 2.800629 GCATGCCCAAGATAATGTGCAC 60.801 50.000 10.75 10.75 36.53 4.57
1599 1840 2.737544 TGCCCAAGATAATGTGCACAT 58.262 42.857 26.61 26.61 38.41 3.21
1603 1887 4.498009 GCCCAAGATAATGTGCACATACAC 60.498 45.833 31.55 22.84 41.10 2.90
1604 1888 4.883585 CCCAAGATAATGTGCACATACACT 59.116 41.667 31.55 24.44 41.30 3.55
1606 1890 6.458751 CCCAAGATAATGTGCACATACACTTC 60.459 42.308 31.55 21.29 41.30 3.01
1610 1894 7.923888 AGATAATGTGCACATACACTTCAATC 58.076 34.615 31.55 20.51 41.30 2.67
1611 1895 7.772292 AGATAATGTGCACATACACTTCAATCT 59.228 33.333 31.55 21.97 41.30 2.40
1617 1901 4.635765 GCACATACACTTCAATCTGGCTAA 59.364 41.667 0.00 0.00 0.00 3.09
1618 1902 5.297776 GCACATACACTTCAATCTGGCTAAT 59.702 40.000 0.00 0.00 0.00 1.73
1620 1904 7.307632 GCACATACACTTCAATCTGGCTAATAG 60.308 40.741 0.00 0.00 0.00 1.73
1621 1905 7.712639 CACATACACTTCAATCTGGCTAATAGT 59.287 37.037 0.00 0.00 0.00 2.12
1676 1985 9.727627 CAACATATAATTTTCCTCTCTTCTTGC 57.272 33.333 0.00 0.00 0.00 4.01
1677 1986 9.692325 AACATATAATTTTCCTCTCTTCTTGCT 57.308 29.630 0.00 0.00 0.00 3.91
1678 1987 9.118300 ACATATAATTTTCCTCTCTTCTTGCTG 57.882 33.333 0.00 0.00 0.00 4.41
1682 1991 3.430042 TTCCTCTCTTCTTGCTGCAAT 57.570 42.857 16.38 0.00 0.00 3.56
1683 1992 4.558226 TTCCTCTCTTCTTGCTGCAATA 57.442 40.909 16.38 5.88 0.00 1.90
1700 2022 3.629398 GCAATAAGCTGCTACATGGAAGT 59.371 43.478 0.90 0.00 39.34 3.01
1701 2023 4.497006 GCAATAAGCTGCTACATGGAAGTG 60.497 45.833 0.90 0.00 39.34 3.16
1703 2025 0.325933 AGCTGCTACATGGAAGTGCA 59.674 50.000 0.00 0.00 0.00 4.57
1789 2112 0.806868 AACAGCCATCTGCACATTCG 59.193 50.000 0.00 0.00 44.10 3.34
2019 2364 7.652524 AGTTCATCATCATAGTGAGTACTGT 57.347 36.000 0.00 0.00 37.78 3.55
2035 2380 1.915489 ACTGTGATGGACCCTATTGCA 59.085 47.619 0.00 0.00 0.00 4.08
2047 2392 1.486310 CCTATTGCAGGTGCCACTCTA 59.514 52.381 0.00 0.00 39.91 2.43
2114 2459 2.238395 GGTCATTGCCTTTCCTCTCTCT 59.762 50.000 0.00 0.00 0.00 3.10
2119 2464 2.733956 TGCCTTTCCTCTCTCTCTCTC 58.266 52.381 0.00 0.00 0.00 3.20
2120 2465 2.311542 TGCCTTTCCTCTCTCTCTCTCT 59.688 50.000 0.00 0.00 0.00 3.10
2121 2466 2.952310 GCCTTTCCTCTCTCTCTCTCTC 59.048 54.545 0.00 0.00 0.00 3.20
2122 2467 3.372025 GCCTTTCCTCTCTCTCTCTCTCT 60.372 52.174 0.00 0.00 0.00 3.10
2132 2477 2.886523 CTCTCTCTCTCTTGCGATCCAT 59.113 50.000 0.00 0.00 0.00 3.41
2197 2542 5.356470 CCATTCCTTGATTCTTTCACCTCTC 59.644 44.000 0.00 0.00 32.84 3.20
2198 2543 5.567037 TTCCTTGATTCTTTCACCTCTCA 57.433 39.130 0.00 0.00 32.84 3.27
2200 2545 4.347876 TCCTTGATTCTTTCACCTCTCACA 59.652 41.667 0.00 0.00 32.84 3.58
2204 2561 5.240891 TGATTCTTTCACCTCTCACATGAC 58.759 41.667 0.00 0.00 0.00 3.06
2436 2797 3.134623 TGGTGCACTCTGGTAGGAATATG 59.865 47.826 17.98 0.00 0.00 1.78
2438 2799 2.224042 TGCACTCTGGTAGGAATATGCG 60.224 50.000 0.00 0.00 34.56 4.73
2543 2906 9.901172 CCATTTCCCTTTATAAACTACTACTGT 57.099 33.333 0.00 0.00 0.00 3.55
2562 2925 8.152246 ACTACTGTGTGGTTTAGCTTACATTTA 58.848 33.333 0.00 0.00 0.00 1.40
2607 2970 9.029368 TCACTCAACTCCCTAGATAATCATATG 57.971 37.037 0.00 0.00 0.00 1.78
2793 3158 5.248380 AGGTTTCTCCTAAGTCAAGCATT 57.752 39.130 0.00 0.00 46.10 3.56
2814 3179 0.036164 ATAAGCAAGTGTCACCCGCA 59.964 50.000 14.68 0.00 0.00 5.69
2815 3180 0.179043 TAAGCAAGTGTCACCCGCAA 60.179 50.000 14.68 2.25 0.00 4.85
2816 3181 1.034838 AAGCAAGTGTCACCCGCAAA 61.035 50.000 14.68 0.00 0.00 3.68
2876 3241 6.851222 AATATAGCAACATCTGAAACTCCG 57.149 37.500 0.00 0.00 0.00 4.63
3031 3768 2.812011 ACACACTCCGCAAATTCCTTAC 59.188 45.455 0.00 0.00 0.00 2.34
3036 3773 0.455815 CCGCAAATTCCTTACCAGGC 59.544 55.000 0.00 0.00 40.58 4.85
3037 3774 1.463674 CGCAAATTCCTTACCAGGCT 58.536 50.000 0.00 0.00 40.58 4.58
3038 3775 1.401905 CGCAAATTCCTTACCAGGCTC 59.598 52.381 0.00 0.00 40.58 4.70
3039 3776 2.446435 GCAAATTCCTTACCAGGCTCA 58.554 47.619 0.00 0.00 40.58 4.26
3040 3777 2.164422 GCAAATTCCTTACCAGGCTCAC 59.836 50.000 0.00 0.00 40.58 3.51
3041 3778 2.755103 CAAATTCCTTACCAGGCTCACC 59.245 50.000 0.00 0.00 40.58 4.02
3043 3780 1.276622 TTCCTTACCAGGCTCACCTC 58.723 55.000 0.00 0.00 46.34 3.85
3044 3781 0.116342 TCCTTACCAGGCTCACCTCA 59.884 55.000 0.00 0.00 46.34 3.86
3045 3782 0.250513 CCTTACCAGGCTCACCTCAC 59.749 60.000 0.00 0.00 46.34 3.51
3082 3819 4.397103 TCAGGCATGTAAAATCTGCTGAAG 59.603 41.667 0.00 0.00 36.18 3.02
3130 3928 9.442047 GGTTATATGTGAGCTAGCTTTTCATAT 57.558 33.333 30.02 30.02 33.43 1.78
3235 4045 9.476202 AAAACTGAAGAAAAGTAATTATGCCAC 57.524 29.630 0.00 0.00 0.00 5.01
3236 4046 7.158099 ACTGAAGAAAAGTAATTATGCCACC 57.842 36.000 0.00 0.00 0.00 4.61
3237 4047 6.719370 ACTGAAGAAAAGTAATTATGCCACCA 59.281 34.615 0.00 0.00 0.00 4.17
3238 4048 7.397192 ACTGAAGAAAAGTAATTATGCCACCAT 59.603 33.333 0.00 0.00 35.44 3.55
3239 4049 7.546358 TGAAGAAAAGTAATTATGCCACCATG 58.454 34.615 0.00 0.00 32.85 3.66
3271 4081 2.214181 GATGGAGACCGCACACGAGT 62.214 60.000 0.00 0.00 43.93 4.18
3285 4095 3.071206 GAGTCAGGAGCGAGCCCA 61.071 66.667 0.00 0.00 0.00 5.36
3289 4099 3.385384 CAGGAGCGAGCCCACAGA 61.385 66.667 0.00 0.00 0.00 3.41
3299 4109 2.031870 GAGCCCACAGAAAAACTTGGT 58.968 47.619 0.00 0.00 0.00 3.67
3300 4110 2.031870 AGCCCACAGAAAAACTTGGTC 58.968 47.619 0.00 0.00 0.00 4.02
3301 4111 1.754226 GCCCACAGAAAAACTTGGTCA 59.246 47.619 0.00 0.00 0.00 4.02
3350 4160 3.741476 GACCTCGGGCACGTACGT 61.741 66.667 16.72 16.72 41.85 3.57
3351 4161 3.273080 GACCTCGGGCACGTACGTT 62.273 63.158 20.23 0.50 41.85 3.99
3731 4544 0.107066 TCGCCAATCTCCATGCATGT 60.107 50.000 24.58 3.69 0.00 3.21
3743 4556 1.402968 CATGCATGTCCTTGTACCAGC 59.597 52.381 18.91 0.00 0.00 4.85
3745 4558 1.905894 TGCATGTCCTTGTACCAGCTA 59.094 47.619 0.00 0.00 0.00 3.32
4020 4844 2.504244 GCTTCCTGACGTCGTCGG 60.504 66.667 24.45 24.45 41.85 4.79
4108 4932 0.389948 CTGTACAACTGACTCCGGCC 60.390 60.000 0.00 0.00 0.00 6.13
4152 5013 1.421410 CGGGTTTCGAAGAGATGGCG 61.421 60.000 0.00 0.00 42.43 5.69
4153 5014 0.391263 GGGTTTCGAAGAGATGGCGT 60.391 55.000 0.00 0.00 38.43 5.68
4154 5015 1.134907 GGGTTTCGAAGAGATGGCGTA 60.135 52.381 0.00 0.00 38.43 4.42
4155 5016 1.925185 GGTTTCGAAGAGATGGCGTAC 59.075 52.381 0.00 0.00 38.43 3.67
4159 5020 2.216046 TCGAAGAGATGGCGTACGTAT 58.784 47.619 17.90 11.76 0.00 3.06
4174 5035 4.495679 CGTACGTATGTATTGGTGTACCGT 60.496 45.833 7.22 0.00 33.81 4.83
4204 5065 6.218025 TGTGTATGTGTACATTTGAACGTC 57.782 37.500 0.00 0.00 42.43 4.34
4230 5091 3.256631 AGCTTCACTCCGATGCAAATTTT 59.743 39.130 0.00 0.00 45.09 1.82
4231 5092 3.365820 GCTTCACTCCGATGCAAATTTTG 59.634 43.478 4.72 4.72 42.82 2.44
4377 5239 0.824109 CGAGTTCCACCAGCATAGGA 59.176 55.000 0.00 0.00 0.00 2.94
4433 5326 7.695869 AAATAGCGTTACAGTCAGCTAATAC 57.304 36.000 8.15 0.00 44.08 1.89
4435 5328 4.421948 AGCGTTACAGTCAGCTAATACAC 58.578 43.478 0.00 0.00 38.29 2.90
4439 5332 3.594603 ACAGTCAGCTAATACACGCTT 57.405 42.857 0.00 0.00 33.45 4.68
4443 5336 5.107065 ACAGTCAGCTAATACACGCTTTTTC 60.107 40.000 0.00 0.00 33.45 2.29
4444 5337 4.091509 AGTCAGCTAATACACGCTTTTTCG 59.908 41.667 0.00 0.00 33.45 3.46
4447 5340 3.187637 AGCTAATACACGCTTTTTCGCAA 59.812 39.130 0.00 0.00 31.17 4.85
4449 5342 4.028509 GCTAATACACGCTTTTTCGCAATG 60.029 41.667 0.00 0.00 0.00 2.82
4457 5350 3.578688 GCTTTTTCGCAATGTCTGGAAT 58.421 40.909 0.00 0.00 0.00 3.01
4459 5352 3.848272 TTTTCGCAATGTCTGGAATCC 57.152 42.857 0.00 0.00 0.00 3.01
4460 5353 1.368641 TTCGCAATGTCTGGAATCCG 58.631 50.000 0.00 0.00 0.00 4.18
4461 5354 0.534873 TCGCAATGTCTGGAATCCGA 59.465 50.000 0.00 0.00 0.00 4.55
4467 5360 1.737838 TGTCTGGAATCCGATGCAAC 58.262 50.000 0.00 0.00 0.00 4.17
4484 5377 1.170290 AACCAACAAGCGGTGCTACC 61.170 55.000 0.00 0.00 38.25 3.18
4487 5380 1.003718 AACAAGCGGTGCTACCTCC 60.004 57.895 0.00 0.00 38.25 4.30
4495 5388 1.044611 GGTGCTACCTCCAGATCTCC 58.955 60.000 0.00 0.00 34.73 3.71
4497 5390 0.105453 TGCTACCTCCAGATCTCCCC 60.105 60.000 0.00 0.00 0.00 4.81
4503 5396 2.022035 ACCTCCAGATCTCCCCACATTA 60.022 50.000 0.00 0.00 0.00 1.90
4505 5398 2.038295 CTCCAGATCTCCCCACATTAGC 59.962 54.545 0.00 0.00 0.00 3.09
4516 5409 5.080337 TCCCCACATTAGCTAGACTATGAG 58.920 45.833 9.59 2.69 0.00 2.90
4561 5454 3.810310 TTTTCAGCGAAACAAACCCAT 57.190 38.095 3.71 0.00 30.83 4.00
4562 5455 2.791383 TTCAGCGAAACAAACCCATG 57.209 45.000 0.00 0.00 0.00 3.66
4564 5457 2.302260 TCAGCGAAACAAACCCATGAA 58.698 42.857 0.00 0.00 0.00 2.57
4565 5458 2.293122 TCAGCGAAACAAACCCATGAAG 59.707 45.455 0.00 0.00 0.00 3.02
4566 5459 1.000274 AGCGAAACAAACCCATGAAGC 60.000 47.619 0.00 0.00 0.00 3.86
4567 5460 1.000274 GCGAAACAAACCCATGAAGCT 60.000 47.619 0.00 0.00 0.00 3.74
4568 5461 2.227865 GCGAAACAAACCCATGAAGCTA 59.772 45.455 0.00 0.00 0.00 3.32
4570 5463 4.475944 CGAAACAAACCCATGAAGCTAAG 58.524 43.478 0.00 0.00 0.00 2.18
4572 5465 2.807676 ACAAACCCATGAAGCTAAGGG 58.192 47.619 10.25 10.25 46.96 3.95
4587 5480 3.643792 GCTAAGGGGCTTCTTGATCTCTA 59.356 47.826 0.00 0.00 0.00 2.43
4594 5487 5.481105 GGGCTTCTTGATCTCTATCATCAG 58.519 45.833 0.00 0.00 41.73 2.90
4603 5496 7.407393 TGATCTCTATCATCAGATGTCCATC 57.593 40.000 10.34 0.00 37.20 3.51
4606 5499 4.411013 TCTATCATCAGATGTCCATCGGT 58.589 43.478 10.34 0.00 42.48 4.69
4611 5504 3.012934 TCAGATGTCCATCGGTAGACA 57.987 47.619 0.00 0.00 46.39 3.41
4614 5507 0.753262 ATGTCCATCGGTAGACAGGC 59.247 55.000 2.83 0.00 45.60 4.85
4628 5521 0.254178 ACAGGCCAAGCGAATCATCT 59.746 50.000 5.01 0.00 0.00 2.90
4634 5527 2.476854 GCCAAGCGAATCATCTGTCAAC 60.477 50.000 0.00 0.00 0.00 3.18
4635 5528 2.743664 CCAAGCGAATCATCTGTCAACA 59.256 45.455 0.00 0.00 0.00 3.33
4638 5531 3.402110 AGCGAATCATCTGTCAACACAA 58.598 40.909 0.00 0.00 29.82 3.33
4640 5533 3.725356 CGAATCATCTGTCAACACAACG 58.275 45.455 0.00 0.00 29.82 4.10
4641 5534 3.423515 CGAATCATCTGTCAACACAACGG 60.424 47.826 0.00 0.00 29.82 4.44
4647 5540 1.526887 CTGTCAACACAACGGTAGCAG 59.473 52.381 0.00 0.00 29.82 4.24
4656 5549 1.993370 CAACGGTAGCAGCTGAGTTAC 59.007 52.381 20.43 15.35 0.00 2.50
4670 5563 3.766591 CTGAGTTACCTGACTGGATCACT 59.233 47.826 5.22 3.83 39.71 3.41
4675 5568 5.129485 AGTTACCTGACTGGATCACTATTGG 59.871 44.000 5.22 0.00 39.71 3.16
4687 5580 4.837896 TCACTATTGGTAGATCAGAGCG 57.162 45.455 0.00 0.00 0.00 5.03
4698 5591 1.010935 ATCAGAGCGTTGCACACTCG 61.011 55.000 0.00 0.00 32.82 4.18
4706 5779 2.731341 GCGTTGCACACTCGTAGATACT 60.731 50.000 0.00 0.00 33.89 2.12
4719 5792 6.017770 ACTCGTAGATACTCCTTCAAGAATCG 60.018 42.308 0.00 0.00 33.89 3.34
4720 5793 4.912766 CGTAGATACTCCTTCAAGAATCGC 59.087 45.833 0.00 0.00 0.00 4.58
4751 5824 2.096496 CGCTTTCAGGGCATCTTTACAG 59.904 50.000 0.00 0.00 0.00 2.74
4754 5827 4.326826 CTTTCAGGGCATCTTTACAGTGA 58.673 43.478 0.00 0.00 0.00 3.41
4764 5837 6.701400 GGCATCTTTACAGTGAAACAAACATT 59.299 34.615 0.00 0.00 41.43 2.71
4783 5856 9.462174 CAAACATTTGTAAGCTGAGAAAATACA 57.538 29.630 0.00 0.00 33.59 2.29
4788 5862 6.254281 TGTAAGCTGAGAAAATACAAAGCC 57.746 37.500 0.00 0.00 0.00 4.35
4807 5881 1.641577 CATCGGAGTTTCGGAGAACC 58.358 55.000 0.00 0.00 45.90 3.62
4818 5892 0.866061 CGGAGAACCATACGAGTGCG 60.866 60.000 0.00 0.00 38.78 5.34
4821 5895 4.595134 GGAGAACCATACGAGTGCGTGT 62.595 54.545 0.68 0.00 42.81 4.49
4829 5903 3.179433 CGAGTGCGTGTCTCTTTCA 57.821 52.632 0.00 0.00 0.00 2.69
4830 5904 1.487482 CGAGTGCGTGTCTCTTTCAA 58.513 50.000 0.00 0.00 0.00 2.69
4831 5905 1.453524 CGAGTGCGTGTCTCTTTCAAG 59.546 52.381 0.00 0.00 0.00 3.02
4833 5907 3.639538 GAGTGCGTGTCTCTTTCAAGTA 58.360 45.455 0.00 0.00 0.00 2.24
4839 5922 5.862323 TGCGTGTCTCTTTCAAGTATTAGTC 59.138 40.000 0.00 0.00 0.00 2.59
4855 5938 7.007723 AGTATTAGTCATAGTGGAAGAGAGGG 58.992 42.308 0.00 0.00 0.00 4.30
4863 5946 6.553852 TCATAGTGGAAGAGAGGGGTAATTAC 59.446 42.308 7.09 7.09 0.00 1.89
4873 5956 2.657974 AGGGGTAATTACCTGGCCTTTT 59.342 45.455 29.26 8.31 45.72 2.27
4874 5957 3.078458 AGGGGTAATTACCTGGCCTTTTT 59.922 43.478 29.26 8.00 45.72 1.94
4935 6018 9.747898 TGTTTGTCACTTTCATTATATAAGGGT 57.252 29.630 7.25 0.00 0.00 4.34
4960 6043 5.782047 ACCACAATGTTACAATGGTTGATG 58.218 37.500 11.84 0.00 40.86 3.07
4961 6044 5.170021 CCACAATGTTACAATGGTTGATGG 58.830 41.667 5.36 0.00 0.00 3.51
4962 6045 5.170021 CACAATGTTACAATGGTTGATGGG 58.830 41.667 5.36 0.00 0.00 4.00
4963 6046 5.047448 CACAATGTTACAATGGTTGATGGGA 60.047 40.000 5.36 0.00 0.00 4.37
4964 6047 5.185635 ACAATGTTACAATGGTTGATGGGAG 59.814 40.000 5.36 0.00 0.00 4.30
4965 6048 4.380843 TGTTACAATGGTTGATGGGAGT 57.619 40.909 0.00 0.00 0.00 3.85
4966 6049 4.078537 TGTTACAATGGTTGATGGGAGTG 58.921 43.478 0.00 0.00 0.00 3.51
4967 6050 1.549203 ACAATGGTTGATGGGAGTGC 58.451 50.000 0.00 0.00 0.00 4.40
4968 6051 1.203038 ACAATGGTTGATGGGAGTGCA 60.203 47.619 0.00 0.00 0.00 4.57
4969 6052 1.894466 CAATGGTTGATGGGAGTGCAA 59.106 47.619 0.00 0.00 0.00 4.08
4970 6053 1.549203 ATGGTTGATGGGAGTGCAAC 58.451 50.000 0.00 0.00 40.74 4.17
4972 6055 3.034924 GTTGATGGGAGTGCAACCA 57.965 52.632 12.29 10.38 41.76 3.67
4978 6061 1.951209 TGGGAGTGCAACCATAGAGA 58.049 50.000 12.29 0.00 37.80 3.10
4979 6062 2.481441 TGGGAGTGCAACCATAGAGAT 58.519 47.619 12.29 0.00 37.80 2.75
4980 6063 3.653164 TGGGAGTGCAACCATAGAGATA 58.347 45.455 12.29 0.00 37.80 1.98
4981 6064 3.388024 TGGGAGTGCAACCATAGAGATAC 59.612 47.826 12.29 0.00 37.80 2.24
4982 6065 3.388024 GGGAGTGCAACCATAGAGATACA 59.612 47.826 12.29 0.00 37.80 2.29
4983 6066 4.141711 GGGAGTGCAACCATAGAGATACAA 60.142 45.833 12.29 0.00 37.80 2.41
4984 6067 5.053145 GGAGTGCAACCATAGAGATACAAG 58.947 45.833 6.35 0.00 37.80 3.16
4985 6068 4.446371 AGTGCAACCATAGAGATACAAGC 58.554 43.478 0.00 0.00 37.80 4.01
4986 6069 4.163078 AGTGCAACCATAGAGATACAAGCT 59.837 41.667 0.00 0.00 37.80 3.74
4987 6070 4.272018 GTGCAACCATAGAGATACAAGCTG 59.728 45.833 0.00 0.00 0.00 4.24
4988 6071 4.080919 TGCAACCATAGAGATACAAGCTGT 60.081 41.667 0.00 0.00 0.00 4.40
4989 6072 5.128663 TGCAACCATAGAGATACAAGCTGTA 59.871 40.000 0.00 0.00 37.24 2.74
4990 6073 5.694006 GCAACCATAGAGATACAAGCTGTAG 59.306 44.000 0.00 0.00 36.14 2.74
4991 6074 6.219473 CAACCATAGAGATACAAGCTGTAGG 58.781 44.000 0.00 0.00 36.14 3.18
4992 6075 5.706447 ACCATAGAGATACAAGCTGTAGGA 58.294 41.667 0.00 0.00 36.14 2.94
4993 6076 6.136857 ACCATAGAGATACAAGCTGTAGGAA 58.863 40.000 0.00 0.00 36.14 3.36
4994 6077 6.266558 ACCATAGAGATACAAGCTGTAGGAAG 59.733 42.308 0.00 0.00 36.14 3.46
4995 6078 6.491745 CCATAGAGATACAAGCTGTAGGAAGA 59.508 42.308 0.00 0.00 36.14 2.87
4996 6079 7.014711 CCATAGAGATACAAGCTGTAGGAAGAA 59.985 40.741 0.00 0.00 36.14 2.52
4997 6080 6.859112 AGAGATACAAGCTGTAGGAAGAAA 57.141 37.500 0.00 0.00 36.14 2.52
4998 6081 7.246171 AGAGATACAAGCTGTAGGAAGAAAA 57.754 36.000 0.00 0.00 36.14 2.29
4999 6082 7.680730 AGAGATACAAGCTGTAGGAAGAAAAA 58.319 34.615 0.00 0.00 36.14 1.94
5000 6083 8.325046 AGAGATACAAGCTGTAGGAAGAAAAAT 58.675 33.333 0.00 0.00 36.14 1.82
5001 6084 8.273780 AGATACAAGCTGTAGGAAGAAAAATG 57.726 34.615 0.00 0.00 36.14 2.32
5002 6085 8.103305 AGATACAAGCTGTAGGAAGAAAAATGA 58.897 33.333 0.00 0.00 36.14 2.57
5003 6086 6.319141 ACAAGCTGTAGGAAGAAAAATGAC 57.681 37.500 0.00 0.00 0.00 3.06
5004 6087 6.064717 ACAAGCTGTAGGAAGAAAAATGACT 58.935 36.000 0.00 0.00 0.00 3.41
5005 6088 7.224297 ACAAGCTGTAGGAAGAAAAATGACTA 58.776 34.615 0.00 0.00 0.00 2.59
5006 6089 7.719633 ACAAGCTGTAGGAAGAAAAATGACTAA 59.280 33.333 0.00 0.00 0.00 2.24
5007 6090 8.567948 CAAGCTGTAGGAAGAAAAATGACTAAA 58.432 33.333 0.00 0.00 0.00 1.85
5008 6091 8.329203 AGCTGTAGGAAGAAAAATGACTAAAG 57.671 34.615 0.00 0.00 0.00 1.85
5009 6092 8.157476 AGCTGTAGGAAGAAAAATGACTAAAGA 58.843 33.333 0.00 0.00 0.00 2.52
5010 6093 8.231161 GCTGTAGGAAGAAAAATGACTAAAGAC 58.769 37.037 0.00 0.00 0.00 3.01
5011 6094 9.495572 CTGTAGGAAGAAAAATGACTAAAGACT 57.504 33.333 0.00 0.00 0.00 3.24
5060 6143 8.853077 TTCATATGTTATCAATCCAGGATGAC 57.147 34.615 1.44 0.00 39.69 3.06
5061 6144 7.976712 TCATATGTTATCAATCCAGGATGACA 58.023 34.615 1.44 4.26 42.85 3.58
5062 6145 8.608598 TCATATGTTATCAATCCAGGATGACAT 58.391 33.333 1.44 14.46 46.89 3.06
5063 6146 8.674607 CATATGTTATCAATCCAGGATGACATG 58.325 37.037 17.68 0.00 45.71 3.21
5064 6147 4.823442 TGTTATCAATCCAGGATGACATGC 59.177 41.667 1.44 0.00 39.69 4.06
5065 6148 2.353357 TCAATCCAGGATGACATGCC 57.647 50.000 1.44 0.00 39.69 4.40
5066 6149 1.565288 TCAATCCAGGATGACATGCCA 59.435 47.619 1.44 0.00 39.69 4.92
5067 6150 2.176148 TCAATCCAGGATGACATGCCAT 59.824 45.455 1.44 0.00 39.69 4.40
5068 6151 2.557056 CAATCCAGGATGACATGCCATC 59.443 50.000 13.16 13.16 39.69 3.51
5077 6160 4.712476 GATGACATGCCATCCTTAAGACT 58.288 43.478 10.67 0.00 37.54 3.24
5078 6161 3.877559 TGACATGCCATCCTTAAGACTG 58.122 45.455 3.36 0.70 0.00 3.51
5079 6162 3.209410 GACATGCCATCCTTAAGACTGG 58.791 50.000 15.32 15.32 0.00 4.00
5080 6163 2.092212 ACATGCCATCCTTAAGACTGGG 60.092 50.000 19.08 10.29 0.00 4.45
5081 6164 0.255890 TGCCATCCTTAAGACTGGGC 59.744 55.000 19.08 17.51 39.07 5.36
5082 6165 0.548510 GCCATCCTTAAGACTGGGCT 59.451 55.000 19.08 0.00 36.86 5.19
5083 6166 1.064389 GCCATCCTTAAGACTGGGCTT 60.064 52.381 19.08 0.00 36.86 4.35
5084 6167 2.648059 CCATCCTTAAGACTGGGCTTG 58.352 52.381 3.36 0.00 0.00 4.01
5085 6168 2.648059 CATCCTTAAGACTGGGCTTGG 58.352 52.381 3.36 0.00 0.00 3.61
5086 6169 0.328258 TCCTTAAGACTGGGCTTGGC 59.672 55.000 3.36 0.00 0.00 4.52
5087 6170 0.329596 CCTTAAGACTGGGCTTGGCT 59.670 55.000 3.36 0.00 0.00 4.75
5088 6171 1.680249 CCTTAAGACTGGGCTTGGCTC 60.680 57.143 3.36 0.00 0.00 4.70
5089 6172 1.280421 CTTAAGACTGGGCTTGGCTCT 59.720 52.381 0.00 0.00 0.00 4.09
5090 6173 2.247699 TAAGACTGGGCTTGGCTCTA 57.752 50.000 0.00 0.00 0.00 2.43
5091 6174 1.362224 AAGACTGGGCTTGGCTCTAA 58.638 50.000 0.00 0.00 0.00 2.10
5092 6175 0.908198 AGACTGGGCTTGGCTCTAAG 59.092 55.000 0.00 0.00 0.00 2.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 0.106469 TCCTCTCTCGGTCCATCTGG 60.106 60.000 0.00 0.00 0.00 3.86
692 703 2.587522 GGCAGGAAGAGACAAAAGGTT 58.412 47.619 0.00 0.00 0.00 3.50
734 751 2.443255 GAGACAGAGGAGGGAGAGAGAT 59.557 54.545 0.00 0.00 0.00 2.75
743 760 1.000283 GTGTGTGTGAGACAGAGGAGG 60.000 57.143 0.00 0.00 34.28 4.30
744 761 1.683385 TGTGTGTGTGAGACAGAGGAG 59.317 52.381 0.00 0.00 34.28 3.69
745 762 1.409064 GTGTGTGTGTGAGACAGAGGA 59.591 52.381 0.00 0.00 34.28 3.71
746 763 1.136891 TGTGTGTGTGTGAGACAGAGG 59.863 52.381 0.00 0.00 34.28 3.69
747 764 2.196749 GTGTGTGTGTGTGAGACAGAG 58.803 52.381 0.00 0.00 34.28 3.35
748 765 1.548269 TGTGTGTGTGTGTGAGACAGA 59.452 47.619 0.00 0.00 34.28 3.41
749 766 1.660607 GTGTGTGTGTGTGTGAGACAG 59.339 52.381 0.00 0.00 34.28 3.51
750 767 1.001406 TGTGTGTGTGTGTGTGAGACA 59.999 47.619 0.00 0.00 0.00 3.41
751 768 1.393539 GTGTGTGTGTGTGTGTGAGAC 59.606 52.381 0.00 0.00 0.00 3.36
840 1052 3.354948 ACTTGCATATGAACTCCAGCA 57.645 42.857 6.97 0.00 0.00 4.41
914 1126 1.123077 CTATCCTACCAGGCAGCACA 58.877 55.000 0.00 0.00 34.61 4.57
929 1141 2.802719 AGCTAGCTAGGCACTCCTATC 58.197 52.381 17.69 1.47 43.67 2.08
930 1142 2.990740 AGCTAGCTAGGCACTCCTAT 57.009 50.000 17.69 0.00 43.67 2.57
931 1143 2.553466 GCTAGCTAGCTAGGCACTCCTA 60.553 54.545 39.60 13.88 45.62 2.94
932 1144 1.821666 GCTAGCTAGCTAGGCACTCCT 60.822 57.143 39.60 11.75 45.62 3.69
933 1145 0.601057 GCTAGCTAGCTAGGCACTCC 59.399 60.000 39.60 24.67 45.62 3.85
1061 1278 1.142748 CATCTCAGTCGAGGCACCC 59.857 63.158 0.00 0.00 39.95 4.61
1068 1285 2.415608 GGGCGTCCATCTCAGTCGA 61.416 63.158 0.00 0.00 0.00 4.20
1071 1288 2.362503 TCGGGCGTCCATCTCAGT 60.363 61.111 6.96 0.00 0.00 3.41
1089 1306 4.379243 ACGAAGCAGCGGTGGAGG 62.379 66.667 17.54 0.00 35.12 4.30
1273 1505 1.473434 GGTGTAGCCCCTGAAGAATCG 60.473 57.143 0.00 0.00 0.00 3.34
1300 1532 0.901580 CCCCCATCAGCTGCAAAACT 60.902 55.000 9.47 0.00 0.00 2.66
1389 1621 3.127548 GGATAACATTGCACACAGACCTG 59.872 47.826 0.00 0.00 0.00 4.00
1390 1622 3.009473 AGGATAACATTGCACACAGACCT 59.991 43.478 0.00 0.00 0.00 3.85
1396 1628 4.095483 CCAAGAGAGGATAACATTGCACAC 59.905 45.833 0.00 0.00 0.00 3.82
1419 1651 4.036262 ACACACAACATATCAACCACACAC 59.964 41.667 0.00 0.00 0.00 3.82
1435 1667 5.773575 TCTGTTTTTAACAAGCACACACAA 58.226 33.333 0.00 0.00 41.61 3.33
1436 1668 5.378292 TCTGTTTTTAACAAGCACACACA 57.622 34.783 0.00 0.00 41.61 3.72
1475 1713 5.687780 TGCATCATGTCAAGATCATTACCT 58.312 37.500 0.00 0.00 0.00 3.08
1504 1742 8.910666 CAAGACTAATCTTCTCATATTACTGCG 58.089 37.037 0.00 0.00 43.69 5.18
1511 1752 8.986991 ACAGGAACAAGACTAATCTTCTCATAT 58.013 33.333 0.00 0.00 43.69 1.78
1519 1760 8.762645 TGATGATTACAGGAACAAGACTAATCT 58.237 33.333 0.00 0.00 36.42 2.40
1524 1765 6.950842 TGATGATGATTACAGGAACAAGACT 58.049 36.000 0.00 0.00 0.00 3.24
1525 1766 7.335422 AGTTGATGATGATTACAGGAACAAGAC 59.665 37.037 0.00 0.00 0.00 3.01
1528 1769 8.408043 AAAGTTGATGATGATTACAGGAACAA 57.592 30.769 0.00 0.00 0.00 2.83
1554 1795 9.260002 CATGCACACACAGTTATACAGATATAA 57.740 33.333 0.00 0.00 31.96 0.98
1555 1796 7.384932 GCATGCACACACAGTTATACAGATATA 59.615 37.037 14.21 0.00 0.00 0.86
1556 1797 6.203530 GCATGCACACACAGTTATACAGATAT 59.796 38.462 14.21 0.00 0.00 1.63
1558 1799 4.333649 GCATGCACACACAGTTATACAGAT 59.666 41.667 14.21 0.00 0.00 2.90
1559 1800 3.684305 GCATGCACACACAGTTATACAGA 59.316 43.478 14.21 0.00 0.00 3.41
1560 1801 3.181507 GGCATGCACACACAGTTATACAG 60.182 47.826 21.36 0.00 0.00 2.74
1561 1802 2.746904 GGCATGCACACACAGTTATACA 59.253 45.455 21.36 0.00 0.00 2.29
1562 1803 2.097466 GGGCATGCACACACAGTTATAC 59.903 50.000 21.36 0.00 0.00 1.47
1564 1805 1.176527 GGGCATGCACACACAGTTAT 58.823 50.000 21.36 0.00 0.00 1.89
1567 1808 1.455402 TTGGGCATGCACACACAGT 60.455 52.632 25.34 0.00 0.00 3.55
1570 1811 1.462616 TATCTTGGGCATGCACACAC 58.537 50.000 25.34 1.45 0.00 3.82
1572 1813 2.428171 ACATTATCTTGGGCATGCACAC 59.572 45.455 25.34 10.90 0.00 3.82
1573 1814 2.427812 CACATTATCTTGGGCATGCACA 59.572 45.455 21.25 21.25 0.00 4.57
1574 1815 2.800629 GCACATTATCTTGGGCATGCAC 60.801 50.000 21.36 18.25 45.57 4.57
1575 1816 1.409790 GCACATTATCTTGGGCATGCA 59.590 47.619 21.36 0.00 45.57 3.96
1576 1817 2.144482 GCACATTATCTTGGGCATGC 57.856 50.000 9.90 9.90 45.57 4.06
1582 1823 6.093909 TGAAGTGTATGTGCACATTATCTTGG 59.906 38.462 35.45 0.00 41.52 3.61
1583 1824 7.075674 TGAAGTGTATGTGCACATTATCTTG 57.924 36.000 35.45 0.00 41.52 3.02
1584 1825 7.686438 TTGAAGTGTATGTGCACATTATCTT 57.314 32.000 35.45 30.25 41.52 2.40
1587 1828 7.201758 CCAGATTGAAGTGTATGTGCACATTAT 60.202 37.037 35.45 16.97 41.52 1.28
1588 1829 6.093909 CCAGATTGAAGTGTATGTGCACATTA 59.906 38.462 35.45 22.36 41.52 1.90
1589 1830 5.106038 CCAGATTGAAGTGTATGTGCACATT 60.106 40.000 35.45 19.48 41.52 2.71
1590 1831 4.397103 CCAGATTGAAGTGTATGTGCACAT 59.603 41.667 33.20 33.20 41.52 3.21
1592 1833 3.426695 GCCAGATTGAAGTGTATGTGCAC 60.427 47.826 10.75 10.75 39.51 4.57
1594 1835 3.012518 AGCCAGATTGAAGTGTATGTGC 58.987 45.455 0.00 0.00 0.00 4.57
1597 1838 9.416794 CTACTATTAGCCAGATTGAAGTGTATG 57.583 37.037 0.00 0.00 0.00 2.39
1599 1840 7.434492 GCTACTATTAGCCAGATTGAAGTGTA 58.566 38.462 0.66 0.00 44.55 2.90
1656 1965 5.948162 TGCAGCAAGAAGAGAGGAAAATTAT 59.052 36.000 0.00 0.00 0.00 1.28
1657 1966 5.316167 TGCAGCAAGAAGAGAGGAAAATTA 58.684 37.500 0.00 0.00 0.00 1.40
1659 1968 3.759581 TGCAGCAAGAAGAGAGGAAAAT 58.240 40.909 0.00 0.00 0.00 1.82
1676 1985 3.208594 TCCATGTAGCAGCTTATTGCAG 58.791 45.455 0.00 0.00 46.47 4.41
1677 1986 3.280197 TCCATGTAGCAGCTTATTGCA 57.720 42.857 0.00 0.00 46.47 4.08
1678 1987 3.629398 ACTTCCATGTAGCAGCTTATTGC 59.371 43.478 0.00 0.00 44.41 3.56
1682 1991 2.027285 TGCACTTCCATGTAGCAGCTTA 60.027 45.455 0.00 0.00 0.00 3.09
1683 1992 1.271543 TGCACTTCCATGTAGCAGCTT 60.272 47.619 0.00 0.00 0.00 3.74
1694 2015 2.239402 TGAGCCTAATGATGCACTTCCA 59.761 45.455 0.00 0.00 0.00 3.53
1700 2022 4.426736 TGAGAATGAGCCTAATGATGCA 57.573 40.909 0.00 0.00 0.00 3.96
1701 2023 4.760715 ACATGAGAATGAGCCTAATGATGC 59.239 41.667 0.00 0.00 0.00 3.91
1703 2025 6.183810 TGACATGAGAATGAGCCTAATGAT 57.816 37.500 0.00 0.00 0.00 2.45
1751 2074 0.036732 TTAGAAGTGTGCCTGCCAGG 59.963 55.000 6.32 6.32 38.80 4.45
1752 2075 1.537202 GTTTAGAAGTGTGCCTGCCAG 59.463 52.381 0.00 0.00 0.00 4.85
1753 2076 1.133945 TGTTTAGAAGTGTGCCTGCCA 60.134 47.619 0.00 0.00 0.00 4.92
1754 2077 1.537202 CTGTTTAGAAGTGTGCCTGCC 59.463 52.381 0.00 0.00 0.00 4.85
1755 2078 1.068954 GCTGTTTAGAAGTGTGCCTGC 60.069 52.381 0.00 0.00 0.00 4.85
1756 2079 1.537202 GGCTGTTTAGAAGTGTGCCTG 59.463 52.381 0.00 0.00 36.32 4.85
1757 2080 1.142870 TGGCTGTTTAGAAGTGTGCCT 59.857 47.619 0.00 0.00 39.57 4.75
1789 2112 4.097286 TGTGGCTTTTCTTTAGGACACAAC 59.903 41.667 0.00 0.00 35.00 3.32
2035 2380 0.764890 TGCTTTGTAGAGTGGCACCT 59.235 50.000 15.27 13.46 0.00 4.00
2047 2392 2.890945 GTGACCCCTTTGTATGCTTTGT 59.109 45.455 0.00 0.00 0.00 2.83
2119 2464 9.907875 TATTGGCAAAACAATGGATCGCAAGAG 62.908 40.741 3.01 0.00 45.19 2.85
2120 2465 7.529516 ATTGGCAAAACAATGGATCGCAAGA 62.530 40.000 3.01 0.00 44.96 3.02
2121 2466 1.994779 GGCAAAACAATGGATCGCAAG 59.005 47.619 0.00 0.00 0.00 4.01
2122 2467 1.342496 TGGCAAAACAATGGATCGCAA 59.658 42.857 0.00 0.00 0.00 4.85
2132 2477 3.704061 GGCTAGGGATATTGGCAAAACAA 59.296 43.478 3.01 0.00 34.41 2.83
2197 2542 5.243426 TCATGCATTCATTCAGTCATGTG 57.757 39.130 0.00 0.00 34.56 3.21
2198 2543 5.592688 TCATCATGCATTCATTCAGTCATGT 59.407 36.000 0.00 0.00 34.56 3.21
2200 2545 5.592688 TGTCATCATGCATTCATTCAGTCAT 59.407 36.000 0.00 0.00 0.00 3.06
2204 2561 6.038271 TCTCTTGTCATCATGCATTCATTCAG 59.962 38.462 0.00 0.00 0.00 3.02
2248 2605 3.047752 TGCAAAGTTTGTGCAGTGC 57.952 47.368 16.70 8.58 46.76 4.40
2399 2760 4.399618 AGTGCACCAGTATACTACAGTCTG 59.600 45.833 14.63 0.00 0.00 3.51
2436 2797 3.938963 TGGTCAATAATTCTTCACTCCGC 59.061 43.478 0.00 0.00 0.00 5.54
2438 2799 4.336713 GGCTGGTCAATAATTCTTCACTCC 59.663 45.833 0.00 0.00 0.00 3.85
2540 2903 9.341899 GAAATAAATGTAAGCTAAACCACACAG 57.658 33.333 0.00 0.00 0.00 3.66
2541 2904 8.301002 GGAAATAAATGTAAGCTAAACCACACA 58.699 33.333 0.00 0.00 0.00 3.72
2542 2905 8.301002 TGGAAATAAATGTAAGCTAAACCACAC 58.699 33.333 0.00 0.00 0.00 3.82
2543 2906 8.410673 TGGAAATAAATGTAAGCTAAACCACA 57.589 30.769 0.00 0.00 0.00 4.17
2544 2907 9.699703 TTTGGAAATAAATGTAAGCTAAACCAC 57.300 29.630 0.00 0.00 0.00 4.16
2562 2925 9.558396 TTGAGTGAAGCAATAAATTTTGGAAAT 57.442 25.926 0.00 0.00 0.00 2.17
2607 2970 1.591768 TGGGGGTAAAGGGATCTCAC 58.408 55.000 0.00 0.00 0.00 3.51
2707 3070 7.007697 CGCTTGCGTCATTAAAATAGGTATAC 58.992 38.462 6.86 0.00 0.00 1.47
2722 3085 2.206750 AGTACTTTTTCGCTTGCGTCA 58.793 42.857 14.70 0.47 0.00 4.35
2793 3158 2.289756 TGCGGGTGACACTTGCTTATAA 60.290 45.455 18.69 1.45 0.00 0.98
3036 3773 0.605589 GTGAGGTGAGGTGAGGTGAG 59.394 60.000 0.00 0.00 0.00 3.51
3037 3774 0.832135 GGTGAGGTGAGGTGAGGTGA 60.832 60.000 0.00 0.00 0.00 4.02
3038 3775 1.121407 TGGTGAGGTGAGGTGAGGTG 61.121 60.000 0.00 0.00 0.00 4.00
3039 3776 1.122019 GTGGTGAGGTGAGGTGAGGT 61.122 60.000 0.00 0.00 0.00 3.85
3040 3777 0.833834 AGTGGTGAGGTGAGGTGAGG 60.834 60.000 0.00 0.00 0.00 3.86
3041 3778 0.605589 GAGTGGTGAGGTGAGGTGAG 59.394 60.000 0.00 0.00 0.00 3.51
3042 3779 0.105709 TGAGTGGTGAGGTGAGGTGA 60.106 55.000 0.00 0.00 0.00 4.02
3043 3780 0.319728 CTGAGTGGTGAGGTGAGGTG 59.680 60.000 0.00 0.00 0.00 4.00
3044 3781 0.833834 CCTGAGTGGTGAGGTGAGGT 60.834 60.000 0.00 0.00 0.00 3.85
3045 3782 1.978473 CCTGAGTGGTGAGGTGAGG 59.022 63.158 0.00 0.00 0.00 3.86
3155 3953 8.562892 GTTGATTAAGCTGCACAGATACATAAT 58.437 33.333 1.02 0.00 0.00 1.28
3156 3954 7.770433 AGTTGATTAAGCTGCACAGATACATAA 59.230 33.333 1.02 0.00 0.00 1.90
3232 4042 2.836360 GGATGGCCTGCATGGTGG 60.836 66.667 3.32 0.00 38.35 4.61
3233 4043 3.214123 CGGATGGCCTGCATGGTG 61.214 66.667 3.32 0.00 38.35 4.17
3234 4044 3.410628 TCGGATGGCCTGCATGGT 61.411 61.111 3.32 0.00 38.35 3.55
3235 4045 2.407440 ATCTCGGATGGCCTGCATGG 62.407 60.000 3.32 0.00 39.35 3.66
3236 4046 1.072678 ATCTCGGATGGCCTGCATG 59.927 57.895 3.32 0.00 0.00 4.06
3237 4047 1.072678 CATCTCGGATGGCCTGCAT 59.927 57.895 3.32 0.00 0.00 3.96
3238 4048 2.507452 CATCTCGGATGGCCTGCA 59.493 61.111 3.32 0.00 0.00 4.41
3239 4049 2.281345 CCATCTCGGATGGCCTGC 60.281 66.667 16.71 0.00 36.56 4.85
3271 4081 3.385384 CTGTGGGCTCGCTCCTGA 61.385 66.667 0.00 0.00 0.00 3.86
3285 4095 3.891366 CCCTGATGACCAAGTTTTTCTGT 59.109 43.478 0.00 0.00 0.00 3.41
3289 4099 1.970640 GCCCCTGATGACCAAGTTTTT 59.029 47.619 0.00 0.00 0.00 1.94
3299 4109 1.905839 TATTCCTTGGCCCCTGATGA 58.094 50.000 0.00 0.00 0.00 2.92
3300 4110 2.522185 CATATTCCTTGGCCCCTGATG 58.478 52.381 0.00 0.00 0.00 3.07
3301 4111 1.203100 GCATATTCCTTGGCCCCTGAT 60.203 52.381 0.00 0.00 0.00 2.90
3560 4373 2.357517 GTGCGAGGTCACCACCAG 60.358 66.667 0.00 0.00 46.68 4.00
3721 4534 1.632920 TGGTACAAGGACATGCATGGA 59.367 47.619 29.41 0.00 31.92 3.41
3731 4544 0.815734 GCGACTAGCTGGTACAAGGA 59.184 55.000 1.28 0.00 44.04 3.36
3743 4556 2.222213 CACCTATCGACTCAGCGACTAG 59.778 54.545 0.00 0.00 43.79 2.57
3745 4558 1.018148 CACCTATCGACTCAGCGACT 58.982 55.000 0.00 0.00 43.79 4.18
4108 4932 3.384789 TCCATACTTTCGATCCCTCACTG 59.615 47.826 0.00 0.00 0.00 3.66
4152 5013 4.920376 ACGGTACACCAATACATACGTAC 58.080 43.478 0.00 0.00 35.14 3.67
4153 5014 5.449862 GGAACGGTACACCAATACATACGTA 60.450 44.000 0.00 0.00 35.14 3.57
4154 5015 4.423732 GAACGGTACACCAATACATACGT 58.576 43.478 0.00 0.00 35.14 3.57
4155 5016 3.798337 GGAACGGTACACCAATACATACG 59.202 47.826 0.00 0.00 35.14 3.06
4159 5020 2.234414 GGAGGAACGGTACACCAATACA 59.766 50.000 0.00 0.00 35.14 2.29
4174 5035 5.755409 AATGTACACATACACAGGAGGAA 57.245 39.130 0.00 0.00 44.11 3.36
4377 5239 9.294614 GAATAAATCCTCTCTTCCATTGCTATT 57.705 33.333 0.00 0.00 0.00 1.73
4408 5301 8.407832 TGTATTAGCTGACTGTAACGCTATTTA 58.592 33.333 0.00 1.43 35.19 1.40
4433 5326 1.710249 CAGACATTGCGAAAAAGCGTG 59.290 47.619 0.00 0.00 40.67 5.34
4435 5328 1.069296 TCCAGACATTGCGAAAAAGCG 60.069 47.619 0.00 0.00 40.67 4.68
4439 5332 2.161410 CGGATTCCAGACATTGCGAAAA 59.839 45.455 3.09 0.00 0.00 2.29
4443 5336 1.262417 CATCGGATTCCAGACATTGCG 59.738 52.381 3.09 0.00 0.00 4.85
4444 5337 1.002033 GCATCGGATTCCAGACATTGC 60.002 52.381 3.09 5.03 0.00 3.56
4447 5340 2.292267 GTTGCATCGGATTCCAGACAT 58.708 47.619 3.09 0.00 0.00 3.06
4449 5342 1.017387 GGTTGCATCGGATTCCAGAC 58.983 55.000 3.09 0.00 0.00 3.51
4457 5350 1.851021 CGCTTGTTGGTTGCATCGGA 61.851 55.000 0.00 0.00 0.00 4.55
4459 5352 1.442520 CCGCTTGTTGGTTGCATCG 60.443 57.895 0.00 0.00 0.00 3.84
4460 5353 0.664166 CACCGCTTGTTGGTTGCATC 60.664 55.000 0.00 0.00 37.72 3.91
4461 5354 1.363443 CACCGCTTGTTGGTTGCAT 59.637 52.632 0.00 0.00 37.72 3.96
4467 5360 1.298859 GAGGTAGCACCGCTTGTTGG 61.299 60.000 0.00 0.00 44.90 3.77
4484 5377 2.038295 GCTAATGTGGGGAGATCTGGAG 59.962 54.545 0.00 0.00 0.00 3.86
4487 5380 4.021544 GTCTAGCTAATGTGGGGAGATCTG 60.022 50.000 0.00 0.00 0.00 2.90
4495 5388 4.281941 TGCTCATAGTCTAGCTAATGTGGG 59.718 45.833 0.00 0.00 39.53 4.61
4497 5390 6.199908 GTGTTGCTCATAGTCTAGCTAATGTG 59.800 42.308 0.00 0.00 39.53 3.21
4503 5396 6.723298 AATAGTGTTGCTCATAGTCTAGCT 57.277 37.500 0.00 0.00 39.53 3.32
4505 5398 8.932945 TCAAAATAGTGTTGCTCATAGTCTAG 57.067 34.615 0.00 0.00 0.00 2.43
4551 5444 3.165071 CCCTTAGCTTCATGGGTTTGTT 58.835 45.455 0.00 0.00 35.13 2.83
4564 5457 7.706977 GATAGAGATCAAGAAGCCCCTTAGCT 61.707 46.154 0.00 0.00 37.01 3.32
4565 5458 2.437651 AGAGATCAAGAAGCCCCTTAGC 59.562 50.000 0.00 0.00 0.00 3.09
4566 5459 5.541868 TGATAGAGATCAAGAAGCCCCTTAG 59.458 44.000 0.00 0.00 39.20 2.18
4567 5460 5.467738 TGATAGAGATCAAGAAGCCCCTTA 58.532 41.667 0.00 0.00 39.20 2.69
4568 5461 4.302067 TGATAGAGATCAAGAAGCCCCTT 58.698 43.478 0.00 0.00 39.20 3.95
4570 5463 4.285517 TGATGATAGAGATCAAGAAGCCCC 59.714 45.833 0.00 0.00 45.23 5.80
4572 5465 6.343716 TCTGATGATAGAGATCAAGAAGCC 57.656 41.667 0.00 0.00 45.23 4.35
4587 5480 4.219507 GTCTACCGATGGACATCTGATGAT 59.780 45.833 23.59 7.30 36.37 2.45
4594 5487 1.269831 GCCTGTCTACCGATGGACATC 60.270 57.143 0.00 2.22 44.45 3.06
4603 5496 2.501223 TTCGCTTGGCCTGTCTACCG 62.501 60.000 3.32 0.00 0.00 4.02
4606 5499 0.901827 TGATTCGCTTGGCCTGTCTA 59.098 50.000 3.32 0.00 0.00 2.59
4611 5504 0.254178 ACAGATGATTCGCTTGGCCT 59.746 50.000 3.32 0.00 0.00 5.19
4614 5507 2.743664 TGTTGACAGATGATTCGCTTGG 59.256 45.455 0.00 0.00 0.00 3.61
4628 5521 1.577468 CTGCTACCGTTGTGTTGACA 58.423 50.000 0.00 0.00 0.00 3.58
4634 5527 0.319900 ACTCAGCTGCTACCGTTGTG 60.320 55.000 9.47 0.00 0.00 3.33
4635 5528 0.393077 AACTCAGCTGCTACCGTTGT 59.607 50.000 9.47 0.00 0.00 3.32
4638 5531 0.531200 GGTAACTCAGCTGCTACCGT 59.469 55.000 18.10 0.00 0.00 4.83
4656 5549 4.895889 TCTACCAATAGTGATCCAGTCAGG 59.104 45.833 0.00 0.00 37.56 3.86
4670 5563 3.132111 TGCAACGCTCTGATCTACCAATA 59.868 43.478 0.00 0.00 0.00 1.90
4675 5568 1.656095 GTGTGCAACGCTCTGATCTAC 59.344 52.381 0.00 0.00 45.72 2.59
4687 5580 3.128938 AGGAGTATCTACGAGTGTGCAAC 59.871 47.826 0.00 0.00 33.73 4.17
4698 5591 4.912766 CGCGATTCTTGAAGGAGTATCTAC 59.087 45.833 0.00 0.00 33.73 2.59
4706 5779 2.268298 GTTAGCGCGATTCTTGAAGGA 58.732 47.619 12.10 0.00 0.00 3.36
4764 5837 6.264292 TGGCTTTGTATTTTCTCAGCTTACAA 59.736 34.615 1.66 1.66 32.55 2.41
4773 5846 4.636206 ACTCCGATGGCTTTGTATTTTCTC 59.364 41.667 0.00 0.00 0.00 2.87
4781 5854 1.156736 CGAAACTCCGATGGCTTTGT 58.843 50.000 0.00 0.00 0.00 2.83
4782 5855 0.447801 CCGAAACTCCGATGGCTTTG 59.552 55.000 0.00 0.00 0.00 2.77
4783 5856 0.323629 TCCGAAACTCCGATGGCTTT 59.676 50.000 0.00 0.00 0.00 3.51
4784 5857 0.108138 CTCCGAAACTCCGATGGCTT 60.108 55.000 0.00 0.00 0.00 4.35
4788 5862 1.067142 TGGTTCTCCGAAACTCCGATG 60.067 52.381 0.00 0.00 36.30 3.84
4821 5895 9.475620 TCCACTATGACTAATACTTGAAAGAGA 57.524 33.333 0.00 0.00 0.00 3.10
4826 5900 9.475620 TCTCTTCCACTATGACTAATACTTGAA 57.524 33.333 0.00 0.00 0.00 2.69
4827 5901 9.126151 CTCTCTTCCACTATGACTAATACTTGA 57.874 37.037 0.00 0.00 0.00 3.02
4828 5902 8.356657 CCTCTCTTCCACTATGACTAATACTTG 58.643 40.741 0.00 0.00 0.00 3.16
4829 5903 7.507616 CCCTCTCTTCCACTATGACTAATACTT 59.492 40.741 0.00 0.00 0.00 2.24
4830 5904 7.007723 CCCTCTCTTCCACTATGACTAATACT 58.992 42.308 0.00 0.00 0.00 2.12
4831 5905 6.209788 CCCCTCTCTTCCACTATGACTAATAC 59.790 46.154 0.00 0.00 0.00 1.89
4833 5907 5.151454 CCCCTCTCTTCCACTATGACTAAT 58.849 45.833 0.00 0.00 0.00 1.73
4839 5922 5.896073 AATTACCCCTCTCTTCCACTATG 57.104 43.478 0.00 0.00 0.00 2.23
4909 5992 9.747898 ACCCTTATATAATGAAAGTGACAAACA 57.252 29.630 0.00 0.00 0.00 2.83
4913 5996 9.841295 GGTTACCCTTATATAATGAAAGTGACA 57.159 33.333 0.00 0.00 0.00 3.58
4914 5997 9.841295 TGGTTACCCTTATATAATGAAAGTGAC 57.159 33.333 0.00 0.00 0.00 3.67
4915 5998 9.841295 GTGGTTACCCTTATATAATGAAAGTGA 57.159 33.333 0.00 0.00 0.00 3.41
4916 5999 9.621629 TGTGGTTACCCTTATATAATGAAAGTG 57.378 33.333 0.00 0.00 0.00 3.16
4937 6020 5.279406 CCATCAACCATTGTAACATTGTGGT 60.279 40.000 0.00 0.00 44.62 4.16
4938 6021 5.170021 CCATCAACCATTGTAACATTGTGG 58.830 41.667 0.00 0.00 36.06 4.17
4939 6022 5.047448 TCCCATCAACCATTGTAACATTGTG 60.047 40.000 0.00 0.00 0.00 3.33
4940 6023 5.083122 TCCCATCAACCATTGTAACATTGT 58.917 37.500 0.00 0.00 0.00 2.71
4941 6024 5.185635 ACTCCCATCAACCATTGTAACATTG 59.814 40.000 0.00 0.00 0.00 2.82
4942 6025 5.185635 CACTCCCATCAACCATTGTAACATT 59.814 40.000 0.00 0.00 0.00 2.71
4943 6026 4.706476 CACTCCCATCAACCATTGTAACAT 59.294 41.667 0.00 0.00 0.00 2.71
4944 6027 4.078537 CACTCCCATCAACCATTGTAACA 58.921 43.478 0.00 0.00 0.00 2.41
4945 6028 3.119495 GCACTCCCATCAACCATTGTAAC 60.119 47.826 0.00 0.00 0.00 2.50
4946 6029 3.088532 GCACTCCCATCAACCATTGTAA 58.911 45.455 0.00 0.00 0.00 2.41
4947 6030 2.040947 TGCACTCCCATCAACCATTGTA 59.959 45.455 0.00 0.00 0.00 2.41
4948 6031 1.203038 TGCACTCCCATCAACCATTGT 60.203 47.619 0.00 0.00 0.00 2.71
4949 6032 1.548081 TGCACTCCCATCAACCATTG 58.452 50.000 0.00 0.00 0.00 2.82
4950 6033 1.895131 GTTGCACTCCCATCAACCATT 59.105 47.619 0.00 0.00 35.36 3.16
4951 6034 1.549203 GTTGCACTCCCATCAACCAT 58.451 50.000 0.00 0.00 35.36 3.55
4952 6035 3.034924 GTTGCACTCCCATCAACCA 57.965 52.632 0.00 0.00 35.36 3.67
4954 6037 1.549203 ATGGTTGCACTCCCATCAAC 58.451 50.000 6.02 0.00 36.76 3.18
4955 6038 2.575735 TCTATGGTTGCACTCCCATCAA 59.424 45.455 13.51 3.22 40.60 2.57
4956 6039 2.171237 CTCTATGGTTGCACTCCCATCA 59.829 50.000 13.51 0.00 40.60 3.07
4957 6040 2.435805 TCTCTATGGTTGCACTCCCATC 59.564 50.000 13.51 0.00 40.60 3.51
4958 6041 2.481441 TCTCTATGGTTGCACTCCCAT 58.519 47.619 14.32 14.32 43.73 4.00
4959 6042 1.951209 TCTCTATGGTTGCACTCCCA 58.049 50.000 1.70 1.70 34.66 4.37
4960 6043 3.388024 TGTATCTCTATGGTTGCACTCCC 59.612 47.826 4.88 0.00 0.00 4.30
4961 6044 4.672587 TGTATCTCTATGGTTGCACTCC 57.327 45.455 0.00 0.00 0.00 3.85
4962 6045 4.509600 GCTTGTATCTCTATGGTTGCACTC 59.490 45.833 0.00 0.00 0.00 3.51
4963 6046 4.163078 AGCTTGTATCTCTATGGTTGCACT 59.837 41.667 0.00 0.00 0.00 4.40
4964 6047 4.272018 CAGCTTGTATCTCTATGGTTGCAC 59.728 45.833 0.00 0.00 0.00 4.57
4965 6048 4.080919 ACAGCTTGTATCTCTATGGTTGCA 60.081 41.667 0.00 0.00 0.00 4.08
4966 6049 4.446371 ACAGCTTGTATCTCTATGGTTGC 58.554 43.478 0.00 0.00 0.00 4.17
4967 6050 6.040955 TCCTACAGCTTGTATCTCTATGGTTG 59.959 42.308 0.00 0.00 31.66 3.77
4968 6051 6.136857 TCCTACAGCTTGTATCTCTATGGTT 58.863 40.000 0.00 0.00 31.66 3.67
4969 6052 5.706447 TCCTACAGCTTGTATCTCTATGGT 58.294 41.667 0.00 0.00 31.66 3.55
4970 6053 6.491745 TCTTCCTACAGCTTGTATCTCTATGG 59.508 42.308 0.00 0.00 31.66 2.74
4971 6054 7.517614 TCTTCCTACAGCTTGTATCTCTATG 57.482 40.000 0.00 0.00 31.66 2.23
4972 6055 8.540507 TTTCTTCCTACAGCTTGTATCTCTAT 57.459 34.615 0.00 0.00 31.66 1.98
4973 6056 7.956328 TTTCTTCCTACAGCTTGTATCTCTA 57.044 36.000 0.00 0.00 31.66 2.43
4974 6057 6.859112 TTTCTTCCTACAGCTTGTATCTCT 57.141 37.500 0.00 0.00 31.66 3.10
4975 6058 7.907214 TTTTTCTTCCTACAGCTTGTATCTC 57.093 36.000 0.00 0.00 31.66 2.75
4976 6059 8.103305 TCATTTTTCTTCCTACAGCTTGTATCT 58.897 33.333 0.00 0.00 31.66 1.98
4977 6060 8.178313 GTCATTTTTCTTCCTACAGCTTGTATC 58.822 37.037 0.00 0.00 31.66 2.24
4978 6061 7.885399 AGTCATTTTTCTTCCTACAGCTTGTAT 59.115 33.333 0.00 0.00 31.66 2.29
4979 6062 7.224297 AGTCATTTTTCTTCCTACAGCTTGTA 58.776 34.615 0.00 0.00 0.00 2.41
4980 6063 6.064717 AGTCATTTTTCTTCCTACAGCTTGT 58.935 36.000 0.00 0.00 0.00 3.16
4981 6064 6.566197 AGTCATTTTTCTTCCTACAGCTTG 57.434 37.500 0.00 0.00 0.00 4.01
4982 6065 8.691661 TTTAGTCATTTTTCTTCCTACAGCTT 57.308 30.769 0.00 0.00 0.00 3.74
4983 6066 8.157476 TCTTTAGTCATTTTTCTTCCTACAGCT 58.843 33.333 0.00 0.00 0.00 4.24
4984 6067 8.231161 GTCTTTAGTCATTTTTCTTCCTACAGC 58.769 37.037 0.00 0.00 0.00 4.40
4985 6068 9.495572 AGTCTTTAGTCATTTTTCTTCCTACAG 57.504 33.333 0.00 0.00 0.00 2.74
5034 6117 9.458727 GTCATCCTGGATTGATAACATATGAAT 57.541 33.333 10.38 2.26 0.00 2.57
5035 6118 8.439172 TGTCATCCTGGATTGATAACATATGAA 58.561 33.333 10.38 0.00 0.00 2.57
5036 6119 7.976712 TGTCATCCTGGATTGATAACATATGA 58.023 34.615 10.38 0.00 0.00 2.15
5037 6120 8.674607 CATGTCATCCTGGATTGATAACATATG 58.325 37.037 6.42 0.00 0.00 1.78
5038 6121 7.338703 GCATGTCATCCTGGATTGATAACATAT 59.661 37.037 6.42 0.00 0.00 1.78
5039 6122 6.656270 GCATGTCATCCTGGATTGATAACATA 59.344 38.462 6.42 0.00 0.00 2.29
5040 6123 5.475909 GCATGTCATCCTGGATTGATAACAT 59.524 40.000 6.42 9.02 0.00 2.71
5041 6124 4.823442 GCATGTCATCCTGGATTGATAACA 59.177 41.667 6.42 7.18 0.00 2.41
5042 6125 4.217118 GGCATGTCATCCTGGATTGATAAC 59.783 45.833 6.42 1.73 0.00 1.89
5043 6126 4.141205 TGGCATGTCATCCTGGATTGATAA 60.141 41.667 6.42 2.53 0.00 1.75
5044 6127 3.395273 TGGCATGTCATCCTGGATTGATA 59.605 43.478 6.42 7.17 0.00 2.15
5045 6128 2.176148 TGGCATGTCATCCTGGATTGAT 59.824 45.455 6.42 0.00 0.00 2.57
5046 6129 1.565288 TGGCATGTCATCCTGGATTGA 59.435 47.619 6.42 5.65 0.00 2.57
5047 6130 2.061509 TGGCATGTCATCCTGGATTG 57.938 50.000 6.42 4.05 0.00 2.67
5048 6131 2.872732 GATGGCATGTCATCCTGGATT 58.127 47.619 26.64 0.00 38.00 3.01
5049 6132 2.581216 GATGGCATGTCATCCTGGAT 57.419 50.000 26.64 2.57 38.00 3.41
5055 6138 4.514441 CAGTCTTAAGGATGGCATGTCATC 59.486 45.833 28.49 28.49 41.93 2.92
5056 6139 4.458397 CAGTCTTAAGGATGGCATGTCAT 58.542 43.478 13.82 13.82 0.00 3.06
5057 6140 3.370846 CCAGTCTTAAGGATGGCATGTCA 60.371 47.826 3.81 0.60 0.00 3.58
5058 6141 3.209410 CCAGTCTTAAGGATGGCATGTC 58.791 50.000 3.81 0.00 0.00 3.06
5059 6142 2.092212 CCCAGTCTTAAGGATGGCATGT 60.092 50.000 3.81 0.00 0.00 3.21
5060 6143 2.579873 CCCAGTCTTAAGGATGGCATG 58.420 52.381 3.81 0.00 0.00 4.06
5061 6144 1.133668 GCCCAGTCTTAAGGATGGCAT 60.134 52.381 17.02 0.00 36.57 4.40
5062 6145 0.255890 GCCCAGTCTTAAGGATGGCA 59.744 55.000 17.02 0.00 36.57 4.92
5063 6146 0.548510 AGCCCAGTCTTAAGGATGGC 59.451 55.000 17.02 15.73 36.71 4.40
5064 6147 2.648059 CAAGCCCAGTCTTAAGGATGG 58.352 52.381 16.00 16.00 0.00 3.51
5065 6148 2.648059 CCAAGCCCAGTCTTAAGGATG 58.352 52.381 1.85 1.93 0.00 3.51
5066 6149 1.064389 GCCAAGCCCAGTCTTAAGGAT 60.064 52.381 1.85 0.00 0.00 3.24
5067 6150 0.328258 GCCAAGCCCAGTCTTAAGGA 59.672 55.000 1.85 0.00 0.00 3.36
5068 6151 0.329596 AGCCAAGCCCAGTCTTAAGG 59.670 55.000 1.85 0.00 0.00 2.69
5069 6152 1.280421 AGAGCCAAGCCCAGTCTTAAG 59.720 52.381 0.00 0.00 0.00 1.85
5070 6153 1.362224 AGAGCCAAGCCCAGTCTTAA 58.638 50.000 0.00 0.00 0.00 1.85
5071 6154 2.247699 TAGAGCCAAGCCCAGTCTTA 57.752 50.000 0.00 0.00 0.00 2.10
5072 6155 1.280421 CTTAGAGCCAAGCCCAGTCTT 59.720 52.381 0.00 0.00 0.00 3.01
5073 6156 0.908198 CTTAGAGCCAAGCCCAGTCT 59.092 55.000 0.00 0.00 0.00 3.24
5074 6157 0.746204 GCTTAGAGCCAAGCCCAGTC 60.746 60.000 4.38 0.00 44.22 3.51
5075 6158 1.301293 GCTTAGAGCCAAGCCCAGT 59.699 57.895 4.38 0.00 44.22 4.00
5076 6159 4.232310 GCTTAGAGCCAAGCCCAG 57.768 61.111 4.38 0.00 44.22 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.