Multiple sequence alignment - TraesCS1B01G216400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G216400 chr1B 100.000 3343 0 0 1 3343 392149618 392152960 0.000000e+00 6174
1 TraesCS1B01G216400 chr1B 86.648 1408 131 39 697 2061 392530466 392529073 0.000000e+00 1506
2 TraesCS1B01G216400 chr1B 96.330 218 8 0 3126 3343 392430828 392431045 3.170000e-95 359
3 TraesCS1B01G216400 chr1B 94.000 150 8 1 2346 2495 673166078 673166226 3.360000e-55 226
4 TraesCS1B01G216400 chr1B 92.308 156 11 1 2348 2503 684637060 684636906 1.560000e-53 220
5 TraesCS1B01G216400 chr1B 91.083 157 12 2 2346 2501 636814221 636814066 9.400000e-51 211
6 TraesCS1B01G216400 chr1A 89.102 1615 93 31 498 2066 363419828 363421405 0.000000e+00 1930
7 TraesCS1B01G216400 chr1A 85.841 1695 164 52 697 2342 363656191 363654524 0.000000e+00 1731
8 TraesCS1B01G216400 chr1A 89.796 637 60 5 2489 3123 432950086 432950719 0.000000e+00 811
9 TraesCS1B01G216400 chr1A 91.026 312 23 2 253 564 363419444 363419750 1.860000e-112 416
10 TraesCS1B01G216400 chr1A 97.561 205 5 0 2138 2342 363421488 363421692 5.310000e-93 351
11 TraesCS1B01G216400 chr1A 91.724 145 12 0 19 163 363419271 363419415 5.660000e-48 202
12 TraesCS1B01G216400 chr1A 94.030 67 4 0 498 564 363419756 363419822 5.900000e-18 102
13 TraesCS1B01G216400 chr1D 87.938 1227 88 32 697 1904 291588549 291587364 0.000000e+00 1391
14 TraesCS1B01G216400 chr1D 90.859 733 52 6 816 1542 291083104 291083827 0.000000e+00 968
15 TraesCS1B01G216400 chr1D 93.952 463 18 7 1887 2342 291084287 291084746 0.000000e+00 691
16 TraesCS1B01G216400 chr1D 94.253 348 18 2 1567 1912 291083908 291084255 6.350000e-147 531
17 TraesCS1B01G216400 chr1D 92.157 153 12 0 2346 2498 206987411 206987259 2.020000e-52 217
18 TraesCS1B01G216400 chr1D 84.390 205 32 0 2138 2342 291587011 291586807 5.660000e-48 202
19 TraesCS1B01G216400 chr1D 94.393 107 4 2 712 818 291081827 291081931 2.670000e-36 163
20 TraesCS1B01G216400 chr1D 95.833 96 4 0 167 262 91235131 91235226 4.470000e-34 156
21 TraesCS1B01G216400 chr4A 91.264 641 48 6 2489 3126 144027276 144026641 0.000000e+00 867
22 TraesCS1B01G216400 chr4A 92.357 157 10 2 2346 2501 646124563 646124718 4.340000e-54 222
23 TraesCS1B01G216400 chr4A 83.796 216 14 18 3140 3343 602800275 602800069 5.700000e-43 185
24 TraesCS1B01G216400 chr4A 94.898 98 3 2 159 256 19660343 19660248 5.780000e-33 152
25 TraesCS1B01G216400 chr4A 82.946 129 16 5 2347 2472 721601814 721601939 9.800000e-21 111
26 TraesCS1B01G216400 chr5A 89.465 636 64 3 2493 3126 504237736 504237102 0.000000e+00 800
27 TraesCS1B01G216400 chr5A 92.357 157 10 2 2346 2501 522984913 522985068 4.340000e-54 222
28 TraesCS1B01G216400 chr3D 89.185 638 63 6 2489 3123 278979903 278980537 0.000000e+00 791
29 TraesCS1B01G216400 chr3D 85.567 194 18 8 3154 3342 346684726 346684538 9.460000e-46 195
30 TraesCS1B01G216400 chr3D 84.184 196 21 8 3153 3343 346702715 346702525 7.370000e-42 182
31 TraesCS1B01G216400 chr3D 94.898 98 4 1 164 260 71921725 71921628 5.780000e-33 152
32 TraesCS1B01G216400 chr3D 95.745 94 4 0 165 258 113472547 113472640 5.780000e-33 152
33 TraesCS1B01G216400 chr3D 94.792 96 5 0 158 253 540544374 540544279 2.080000e-32 150
34 TraesCS1B01G216400 chr6D 89.185 638 61 6 2489 3123 38627735 38628367 0.000000e+00 789
35 TraesCS1B01G216400 chr6D 95.745 94 4 0 159 252 132853780 132853873 5.780000e-33 152
36 TraesCS1B01G216400 chr6D 96.667 90 3 0 163 252 373421969 373421880 2.080000e-32 150
37 TraesCS1B01G216400 chr6D 95.699 93 4 0 162 254 389366494 389366586 2.080000e-32 150
38 TraesCS1B01G216400 chr6D 94.681 94 5 0 162 255 364492644 364492551 2.690000e-31 147
39 TraesCS1B01G216400 chr6D 93.878 98 5 1 164 260 432036211 432036308 2.690000e-31 147
40 TraesCS1B01G216400 chr6D 86.992 123 12 4 162 282 352976086 352976206 5.820000e-28 135
41 TraesCS1B01G216400 chr2D 89.080 641 59 8 2489 3126 340692339 340691707 0.000000e+00 785
42 TraesCS1B01G216400 chr6B 88.784 633 66 5 2493 3123 128883087 128883716 0.000000e+00 771
43 TraesCS1B01G216400 chr6B 88.486 634 66 7 2493 3123 593623550 593624179 0.000000e+00 760
44 TraesCS1B01G216400 chr6B 95.833 96 4 0 158 253 132609022 132608927 4.470000e-34 156
45 TraesCS1B01G216400 chr6B 95.833 96 4 0 158 253 281980093 281980188 4.470000e-34 156
46 TraesCS1B01G216400 chr2A 88.401 638 68 6 2489 3123 113815639 113816273 0.000000e+00 763
47 TraesCS1B01G216400 chr2A 90.625 160 13 2 2346 2504 41620044 41619886 9.400000e-51 211
48 TraesCS1B01G216400 chr5B 91.748 206 12 5 3140 3342 547067795 547067998 7.060000e-72 281
49 TraesCS1B01G216400 chr5B 91.720 157 11 2 2346 2501 375732613 375732458 2.020000e-52 217
50 TraesCS1B01G216400 chr5B 91.250 160 12 2 2346 2504 606865398 606865240 2.020000e-52 217
51 TraesCS1B01G216400 chr5B 91.083 157 12 2 2346 2501 315762243 315762088 9.400000e-51 211
52 TraesCS1B01G216400 chr5B 92.568 148 10 1 2346 2493 503878216 503878362 9.400000e-51 211
53 TraesCS1B01G216400 chr5B 90.385 156 12 3 2347 2501 503888671 503888518 5.660000e-48 202
54 TraesCS1B01G216400 chr5B 95.876 97 4 0 157 253 614127528 614127432 1.240000e-34 158
55 TraesCS1B01G216400 chr5B 95.833 96 4 0 158 253 33191405 33191310 4.470000e-34 156
56 TraesCS1B01G216400 chr5B 95.833 96 4 0 158 253 472940446 472940351 4.470000e-34 156
57 TraesCS1B01G216400 chr5B 95.833 96 3 1 162 256 706389109 706389204 1.610000e-33 154
58 TraesCS1B01G216400 chr5B 92.593 108 5 3 165 271 696201065 696200960 5.780000e-33 152
59 TraesCS1B01G216400 chr6A 88.626 211 16 8 3140 3343 167005288 167005497 1.990000e-62 250
60 TraesCS1B01G216400 chr2B 94.340 159 8 1 2347 2504 87161666 87161508 3.330000e-60 243
61 TraesCS1B01G216400 chr2B 92.357 157 10 2 2346 2501 70808136 70808291 4.340000e-54 222
62 TraesCS1B01G216400 chr3B 91.875 160 12 1 2346 2505 715150801 715150643 4.340000e-54 222
63 TraesCS1B01G216400 chr3B 91.304 161 12 2 2346 2506 715148254 715148412 5.620000e-53 219
64 TraesCS1B01G216400 chr4D 85.641 195 18 8 3154 3343 351483826 351484015 2.630000e-46 196
65 TraesCS1B01G216400 chr4D 96.809 94 3 0 165 258 29238319 29238226 1.240000e-34 158
66 TraesCS1B01G216400 chr4D 94.898 98 4 1 164 260 41339510 41339607 5.780000e-33 152
67 TraesCS1B01G216400 chr4D 94.792 96 5 0 158 253 25110356 25110261 2.080000e-32 150
68 TraesCS1B01G216400 chr4D 95.745 94 2 2 164 256 272009945 272010037 2.080000e-32 150
69 TraesCS1B01G216400 chr4D 93.939 99 5 1 164 261 26146517 26146615 7.470000e-32 148
70 TraesCS1B01G216400 chrUn 83.256 215 17 16 3140 3343 134249934 134250140 2.650000e-41 180
71 TraesCS1B01G216400 chrUn 96.703 91 3 0 162 252 100081299 100081389 5.780000e-33 152
72 TraesCS1B01G216400 chrUn 96.703 91 2 1 162 252 37006358 37006447 2.080000e-32 150
73 TraesCS1B01G216400 chrUn 96.703 91 2 1 162 252 38258579 38258668 2.080000e-32 150
74 TraesCS1B01G216400 chrUn 95.699 93 4 0 166 258 67634373 67634465 2.080000e-32 150
75 TraesCS1B01G216400 chrUn 96.703 91 2 1 162 252 196709651 196709562 2.080000e-32 150
76 TraesCS1B01G216400 chrUn 96.629 89 3 0 165 253 26435541 26435629 7.470000e-32 148
77 TraesCS1B01G216400 chrUn 95.604 91 3 1 162 252 36920982 36921071 9.670000e-31 145
78 TraesCS1B01G216400 chrUn 96.552 87 3 0 166 252 110002991 110002905 9.670000e-31 145
79 TraesCS1B01G216400 chrUn 95.604 91 3 1 162 252 242182955 242182866 9.670000e-31 145
80 TraesCS1B01G216400 chrUn 92.857 98 5 2 157 252 162568840 162568743 1.250000e-29 141
81 TraesCS1B01G216400 chr7D 82.791 215 17 15 3140 3343 555547883 555547678 1.230000e-39 174
82 TraesCS1B01G216400 chr7D 94.898 98 4 1 164 260 492371955 492371858 5.780000e-33 152
83 TraesCS1B01G216400 chr7D 94.898 98 4 1 164 260 570377877 570377974 5.780000e-33 152
84 TraesCS1B01G216400 chr5D 95.918 98 3 1 164 260 310742408 310742505 1.240000e-34 158
85 TraesCS1B01G216400 chr5D 94.898 98 4 1 164 260 237195277 237195374 5.780000e-33 152
86 TraesCS1B01G216400 chr4B 95.789 95 4 0 158 252 75220214 75220308 1.610000e-33 154


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G216400 chr1B 392149618 392152960 3342 False 6174.00 6174 100.00000 1 3343 1 chr1B.!!$F1 3342
1 TraesCS1B01G216400 chr1B 392529073 392530466 1393 True 1506.00 1506 86.64800 697 2061 1 chr1B.!!$R1 1364
2 TraesCS1B01G216400 chr1A 363654524 363656191 1667 True 1731.00 1731 85.84100 697 2342 1 chr1A.!!$R1 1645
3 TraesCS1B01G216400 chr1A 432950086 432950719 633 False 811.00 811 89.79600 2489 3123 1 chr1A.!!$F1 634
4 TraesCS1B01G216400 chr1A 363419271 363421692 2421 False 600.20 1930 92.68860 19 2342 5 chr1A.!!$F2 2323
5 TraesCS1B01G216400 chr1D 291586807 291588549 1742 True 796.50 1391 86.16400 697 2342 2 chr1D.!!$R2 1645
6 TraesCS1B01G216400 chr1D 291081827 291084746 2919 False 588.25 968 93.36425 712 2342 4 chr1D.!!$F2 1630
7 TraesCS1B01G216400 chr4A 144026641 144027276 635 True 867.00 867 91.26400 2489 3126 1 chr4A.!!$R2 637
8 TraesCS1B01G216400 chr5A 504237102 504237736 634 True 800.00 800 89.46500 2493 3126 1 chr5A.!!$R1 633
9 TraesCS1B01G216400 chr3D 278979903 278980537 634 False 791.00 791 89.18500 2489 3123 1 chr3D.!!$F2 634
10 TraesCS1B01G216400 chr6D 38627735 38628367 632 False 789.00 789 89.18500 2489 3123 1 chr6D.!!$F1 634
11 TraesCS1B01G216400 chr2D 340691707 340692339 632 True 785.00 785 89.08000 2489 3126 1 chr2D.!!$R1 637
12 TraesCS1B01G216400 chr6B 128883087 128883716 629 False 771.00 771 88.78400 2493 3123 1 chr6B.!!$F1 630
13 TraesCS1B01G216400 chr6B 593623550 593624179 629 False 760.00 760 88.48600 2493 3123 1 chr6B.!!$F3 630
14 TraesCS1B01G216400 chr2A 113815639 113816273 634 False 763.00 763 88.40100 2489 3123 1 chr2A.!!$F1 634

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
681 819 0.546122 ACTGAAGCTGTGTTGTGGGA 59.454 50.0 0.00 0.0 0.00 4.37 F
855 2223 0.620556 GAGGGAGAATCAGGCCAACA 59.379 55.0 5.01 0.0 36.25 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1489 2870 0.032678 AGGCATACGGATTGAGCTCG 59.967 55.0 9.64 0.0 0.0 5.03 R
2827 4413 0.332293 TTGCTCATCATGCCCTCCAA 59.668 50.0 0.00 0.0 0.0 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 7.375106 ACGGAGGAAGTATTATATAGTGTCG 57.625 40.000 0.00 0.00 0.00 4.35
49 50 2.942376 AGTGTCGTTTTCAATGCAGACA 59.058 40.909 0.00 0.00 36.43 3.41
51 52 2.286950 TGTCGTTTTCAATGCAGACAGC 60.287 45.455 0.00 0.00 45.96 4.40
63 64 1.603931 GCAGACAGCAAAGCCTTTTCC 60.604 52.381 0.00 0.00 44.79 3.13
64 65 0.954452 AGACAGCAAAGCCTTTTCCG 59.046 50.000 0.00 0.00 0.00 4.30
83 84 3.458118 TCCGGTGAATGATACTTTGGGAT 59.542 43.478 0.00 0.00 0.00 3.85
97 98 5.086621 ACTTTGGGATAAAGGACAATGCTT 58.913 37.500 4.64 0.00 0.00 3.91
144 145 4.684703 ACTGATACTTGTTTGTCTGCGTAC 59.315 41.667 0.00 0.00 0.00 3.67
145 146 4.878439 TGATACTTGTTTGTCTGCGTACT 58.122 39.130 0.00 0.00 0.00 2.73
155 156 0.956633 TCTGCGTACTAATAGCCGGG 59.043 55.000 2.18 0.00 0.00 5.73
163 164 3.706600 ACTAATAGCCGGGACAACAAA 57.293 42.857 2.18 0.00 0.00 2.83
165 166 5.362105 ACTAATAGCCGGGACAACAAATA 57.638 39.130 2.18 0.00 0.00 1.40
166 167 5.365619 ACTAATAGCCGGGACAACAAATAG 58.634 41.667 2.18 0.00 0.00 1.73
167 168 3.926058 ATAGCCGGGACAACAAATAGT 57.074 42.857 2.18 0.00 0.00 2.12
170 171 2.570302 AGCCGGGACAACAAATAGTACT 59.430 45.455 2.18 0.00 0.00 2.73
171 172 2.934553 GCCGGGACAACAAATAGTACTC 59.065 50.000 2.18 0.00 0.00 2.59
172 173 3.528532 CCGGGACAACAAATAGTACTCC 58.471 50.000 0.00 0.00 0.00 3.85
173 174 3.528532 CGGGACAACAAATAGTACTCCC 58.471 50.000 0.00 0.00 40.47 4.30
175 176 4.679905 CGGGACAACAAATAGTACTCCCTC 60.680 50.000 0.00 0.00 41.19 4.30
177 178 5.420409 GGACAACAAATAGTACTCCCTCTG 58.580 45.833 0.00 0.00 0.00 3.35
179 180 6.038997 ACAACAAATAGTACTCCCTCTGTC 57.961 41.667 0.00 0.00 0.00 3.51
180 181 5.046520 ACAACAAATAGTACTCCCTCTGTCC 60.047 44.000 0.00 0.00 0.00 4.02
181 182 4.031611 ACAAATAGTACTCCCTCTGTCCC 58.968 47.826 0.00 0.00 0.00 4.46
182 183 4.030913 CAAATAGTACTCCCTCTGTCCCA 58.969 47.826 0.00 0.00 0.00 4.37
185 186 2.986050 AGTACTCCCTCTGTCCCAAAA 58.014 47.619 0.00 0.00 0.00 2.44
186 187 3.532102 AGTACTCCCTCTGTCCCAAAAT 58.468 45.455 0.00 0.00 0.00 1.82
187 188 4.695606 AGTACTCCCTCTGTCCCAAAATA 58.304 43.478 0.00 0.00 0.00 1.40
189 190 6.449956 AGTACTCCCTCTGTCCCAAAATATA 58.550 40.000 0.00 0.00 0.00 0.86
190 191 6.906901 AGTACTCCCTCTGTCCCAAAATATAA 59.093 38.462 0.00 0.00 0.00 0.98
191 192 6.253946 ACTCCCTCTGTCCCAAAATATAAG 57.746 41.667 0.00 0.00 0.00 1.73
192 193 5.970640 ACTCCCTCTGTCCCAAAATATAAGA 59.029 40.000 0.00 0.00 0.00 2.10
193 194 6.447084 ACTCCCTCTGTCCCAAAATATAAGAA 59.553 38.462 0.00 0.00 0.00 2.52
194 195 6.659824 TCCCTCTGTCCCAAAATATAAGAAC 58.340 40.000 0.00 0.00 0.00 3.01
195 196 6.216662 TCCCTCTGTCCCAAAATATAAGAACA 59.783 38.462 0.00 0.00 0.00 3.18
196 197 7.062957 CCCTCTGTCCCAAAATATAAGAACAT 58.937 38.462 0.00 0.00 0.00 2.71
197 198 7.561356 CCCTCTGTCCCAAAATATAAGAACATT 59.439 37.037 0.00 0.00 0.00 2.71
198 199 8.971073 CCTCTGTCCCAAAATATAAGAACATTT 58.029 33.333 0.00 0.00 0.00 2.32
214 215 8.732746 AAGAACATTTTTGACACTACACTAGT 57.267 30.769 0.00 0.00 40.28 2.57
227 228 6.579491 ACTACACTAGTGTCAAAAACGTTC 57.421 37.500 31.11 0.00 43.74 3.95
228 229 6.335777 ACTACACTAGTGTCAAAAACGTTCT 58.664 36.000 31.11 5.44 43.74 3.01
229 230 6.815142 ACTACACTAGTGTCAAAAACGTTCTT 59.185 34.615 31.11 4.99 43.74 2.52
230 231 7.975616 ACTACACTAGTGTCAAAAACGTTCTTA 59.024 33.333 31.11 8.36 43.74 2.10
231 232 7.781548 ACACTAGTGTCAAAAACGTTCTTAT 57.218 32.000 22.95 0.00 40.24 1.73
232 233 8.876275 ACACTAGTGTCAAAAACGTTCTTATA 57.124 30.769 22.95 0.00 40.24 0.98
233 234 9.485206 ACACTAGTGTCAAAAACGTTCTTATAT 57.515 29.630 22.95 0.00 40.24 0.86
239 240 9.498307 GTGTCAAAAACGTTCTTATATTATGGG 57.502 33.333 0.00 0.00 0.00 4.00
240 241 9.451002 TGTCAAAAACGTTCTTATATTATGGGA 57.549 29.630 0.00 0.00 0.00 4.37
241 242 9.712359 GTCAAAAACGTTCTTATATTATGGGAC 57.288 33.333 0.00 0.00 0.00 4.46
242 243 8.605746 TCAAAAACGTTCTTATATTATGGGACG 58.394 33.333 0.00 9.33 0.00 4.79
243 244 7.486802 AAAACGTTCTTATATTATGGGACGG 57.513 36.000 0.00 1.76 0.00 4.79
244 245 6.409524 AACGTTCTTATATTATGGGACGGA 57.590 37.500 0.00 0.00 0.00 4.69
245 246 6.022163 ACGTTCTTATATTATGGGACGGAG 57.978 41.667 13.18 0.00 0.00 4.63
246 247 5.047519 ACGTTCTTATATTATGGGACGGAGG 60.048 44.000 13.18 0.00 0.00 4.30
247 248 5.623824 CGTTCTTATATTATGGGACGGAGGG 60.624 48.000 0.00 0.00 0.00 4.30
248 249 5.279562 TCTTATATTATGGGACGGAGGGA 57.720 43.478 0.00 0.00 0.00 4.20
249 250 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
250 251 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
251 252 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
300 301 9.669887 AGCATTAAGGCAATTCAAAATAATGAA 57.330 25.926 15.35 0.00 38.80 2.57
305 306 7.656707 AGGCAATTCAAAATAATGAACACAC 57.343 32.000 0.00 0.00 41.78 3.82
306 307 7.215789 AGGCAATTCAAAATAATGAACACACA 58.784 30.769 0.00 0.00 41.78 3.72
335 336 5.071788 TGGCTTCTTCCGAATTAGGATGTAT 59.928 40.000 16.63 0.00 40.48 2.29
340 341 9.982651 CTTCTTCCGAATTAGGATGTATAAAGA 57.017 33.333 16.63 8.89 40.48 2.52
352 353 8.773404 AGGATGTATAAAGACAACACTAACAC 57.227 34.615 0.00 0.00 31.83 3.32
362 363 3.815962 ACAACACTAACACACACACACAA 59.184 39.130 0.00 0.00 0.00 3.33
374 375 3.627123 CACACACACAAAGGATCAAGTCA 59.373 43.478 0.00 0.00 0.00 3.41
389 390 8.642432 AGGATCAAGTCATATAAGATCGAAACA 58.358 33.333 0.00 0.00 36.76 2.83
397 398 8.436200 GTCATATAAGATCGAAACAATGCCTAC 58.564 37.037 0.00 0.00 0.00 3.18
478 479 5.014858 ACTTGATGAGCCAACAAAGATGAT 58.985 37.500 0.00 0.00 0.00 2.45
502 503 3.195002 ACACGCGATTCCGGCATG 61.195 61.111 15.93 0.00 36.06 4.06
552 625 1.200020 GCACAATACACAAGCACTCCC 59.800 52.381 0.00 0.00 0.00 4.30
556 629 3.009723 CAATACACAAGCACTCCCGATT 58.990 45.455 0.00 0.00 0.00 3.34
564 700 2.457598 AGCACTCCCGATTGTAAGAGA 58.542 47.619 0.00 0.00 0.00 3.10
566 702 2.094182 GCACTCCCGATTGTAAGAGACA 60.094 50.000 0.00 0.00 35.78 3.41
569 705 5.178797 CACTCCCGATTGTAAGAGACATTT 58.821 41.667 0.00 0.00 38.07 2.32
571 707 3.938963 TCCCGATTGTAAGAGACATTTGC 59.061 43.478 0.00 0.00 38.07 3.68
600 736 5.164031 CCAAAAACATTTGTCGATGCATGAG 60.164 40.000 2.46 0.00 0.00 2.90
607 743 1.209128 GTCGATGCATGAGTAACGGG 58.791 55.000 2.46 0.00 0.00 5.28
681 819 0.546122 ACTGAAGCTGTGTTGTGGGA 59.454 50.000 0.00 0.00 0.00 4.37
684 822 1.955778 TGAAGCTGTGTTGTGGGATTG 59.044 47.619 0.00 0.00 0.00 2.67
685 823 1.956477 GAAGCTGTGTTGTGGGATTGT 59.044 47.619 0.00 0.00 0.00 2.71
686 824 2.949177 AGCTGTGTTGTGGGATTGTA 57.051 45.000 0.00 0.00 0.00 2.41
687 825 2.504367 AGCTGTGTTGTGGGATTGTAC 58.496 47.619 0.00 0.00 0.00 2.90
688 826 2.158682 AGCTGTGTTGTGGGATTGTACA 60.159 45.455 0.00 0.00 0.00 2.90
689 827 2.031157 GCTGTGTTGTGGGATTGTACAC 60.031 50.000 0.00 0.00 39.52 2.90
690 828 2.552315 CTGTGTTGTGGGATTGTACACC 59.448 50.000 0.00 0.00 38.59 4.16
691 829 1.883926 GTGTTGTGGGATTGTACACCC 59.116 52.381 13.52 13.52 45.74 4.61
708 846 1.376424 CCATGCTCACAGCCTTCGT 60.376 57.895 0.00 0.00 41.51 3.85
855 2223 0.620556 GAGGGAGAATCAGGCCAACA 59.379 55.000 5.01 0.00 36.25 3.33
937 2311 7.489435 CCACACACTGTCTCTGTACTATAAATG 59.511 40.741 0.00 0.00 0.00 2.32
948 2322 8.893219 TCTGTACTATAAATGCTTCATTCCAG 57.107 34.615 0.00 0.00 32.43 3.86
960 2334 4.583871 CTTCATTCCAGTGCCTAACTTCT 58.416 43.478 0.00 0.00 36.83 2.85
967 2341 4.777896 TCCAGTGCCTAACTTCTCTACAAT 59.222 41.667 0.00 0.00 36.83 2.71
973 2347 4.876679 GCCTAACTTCTCTACAATCCCAAC 59.123 45.833 0.00 0.00 0.00 3.77
996 2370 5.008316 ACCAAAACGAGCTAACAAACCTTAG 59.992 40.000 0.00 0.00 0.00 2.18
999 2373 4.595762 ACGAGCTAACAAACCTTAGACA 57.404 40.909 0.00 0.00 0.00 3.41
1041 2415 1.229428 GCTTGCTACTTGTGTCTGCA 58.771 50.000 0.00 0.00 35.25 4.41
1391 2772 3.868757 ATGTAGCTGTACATCGTGTGT 57.131 42.857 0.00 1.87 45.20 3.72
1489 2870 2.399916 AGAAAGATGTGCCTGAGCTC 57.600 50.000 6.82 6.82 40.80 4.09
1711 3148 2.752354 CAATTCCACGGGTATGCAAGAA 59.248 45.455 0.00 0.00 0.00 2.52
1713 3150 2.799126 TCCACGGGTATGCAAGAAAT 57.201 45.000 0.00 0.00 0.00 2.17
1828 3269 1.124780 TCCTCGTCAGGTGGTTTCAA 58.875 50.000 0.00 0.00 41.28 2.69
1848 3289 0.759060 AGGTTCCCCCAGCACAAAAC 60.759 55.000 0.00 0.00 34.66 2.43
1906 3347 5.370880 AGGTCTGCCAACTTATCCATAGATT 59.629 40.000 0.00 0.00 37.19 2.40
1910 3351 7.171678 GTCTGCCAACTTATCCATAGATTGTAC 59.828 40.741 0.00 0.00 33.67 2.90
1982 3532 4.649674 GGATCACTAGGACACTACATTCCA 59.350 45.833 0.00 0.00 33.92 3.53
2085 3639 3.027412 ACGCTGATATCCAGTTCACTCT 58.973 45.455 0.00 0.00 44.71 3.24
2261 3842 2.846371 GTCCTGCGACTTCAGCATT 58.154 52.632 0.00 0.00 44.26 3.56
2342 3923 4.633175 TCATAGACGTCTACAGCCTCTAG 58.367 47.826 26.87 8.89 0.00 2.43
2343 3924 4.101274 TCATAGACGTCTACAGCCTCTAGT 59.899 45.833 26.87 4.84 0.00 2.57
2344 3925 2.634600 AGACGTCTACAGCCTCTAGTG 58.365 52.381 18.46 0.00 0.00 2.74
2345 3926 1.671845 GACGTCTACAGCCTCTAGTGG 59.328 57.143 8.70 6.47 0.00 4.00
2346 3927 1.025812 CGTCTACAGCCTCTAGTGGG 58.974 60.000 12.65 6.56 0.00 4.61
2352 3933 4.182433 GCCTCTAGTGGGCCCTGC 62.182 72.222 25.70 16.20 43.49 4.85
2353 3934 2.366167 CCTCTAGTGGGCCCTGCT 60.366 66.667 25.70 22.54 0.00 4.24
2354 3935 2.739996 CCTCTAGTGGGCCCTGCTG 61.740 68.421 25.70 14.76 0.00 4.41
2355 3936 3.397613 CTCTAGTGGGCCCTGCTGC 62.398 68.421 25.70 8.03 0.00 5.25
2356 3937 4.845580 CTAGTGGGCCCTGCTGCG 62.846 72.222 25.70 12.47 0.00 5.18
2417 3998 3.314331 CCTCACCTGGCGGACACT 61.314 66.667 0.00 0.00 0.00 3.55
2418 3999 2.047844 CTCACCTGGCGGACACTG 60.048 66.667 0.00 0.00 0.00 3.66
2419 4000 4.314440 TCACCTGGCGGACACTGC 62.314 66.667 0.00 0.00 0.00 4.40
2420 4001 4.320456 CACCTGGCGGACACTGCT 62.320 66.667 0.00 0.00 0.00 4.24
2421 4002 4.320456 ACCTGGCGGACACTGCTG 62.320 66.667 0.00 0.00 0.00 4.41
2428 4009 4.314440 GGACACTGCTGGCCGACA 62.314 66.667 0.00 0.00 35.10 4.35
2509 4091 1.809567 CTGCAAGCCGCCCTCTTTTT 61.810 55.000 0.00 0.00 41.33 1.94
2519 4101 2.554032 CGCCCTCTTTTTGTGTCATTCT 59.446 45.455 0.00 0.00 0.00 2.40
2553 4137 6.286758 TGTGTGTTCATTTGCATACCATTTT 58.713 32.000 0.00 0.00 0.00 1.82
2571 4156 5.995282 CCATTTTCCAATATGCTTGCATGAT 59.005 36.000 17.26 4.08 0.00 2.45
2577 4162 7.999450 TCCAATATGCTTGCATGATATACAA 57.001 32.000 17.26 0.00 0.00 2.41
2579 4164 8.463607 TCCAATATGCTTGCATGATATACAATG 58.536 33.333 17.26 0.40 0.00 2.82
2617 4202 1.272092 TGGAGGCATTCAAGGTCCAAG 60.272 52.381 0.00 0.00 34.30 3.61
2666 4251 5.104817 CCCATTGCTTTTAGGGTCATCAAAT 60.105 40.000 0.00 0.00 36.52 2.32
2702 4287 2.896801 GCGCAATATGCCACCCTCG 61.897 63.158 0.30 0.00 41.12 4.63
2754 4339 0.822121 GTTGGGAACGGCAAGAAGGT 60.822 55.000 0.00 0.00 0.00 3.50
2760 4345 0.677842 AACGGCAAGAAGGTACGACT 59.322 50.000 0.00 0.00 0.00 4.18
2767 4353 3.366739 GAAGGTACGACTGCGGGGG 62.367 68.421 0.00 0.00 43.17 5.40
2821 4407 4.478195 CGTCGAACGCCTTGATCT 57.522 55.556 0.00 0.00 33.65 2.75
2899 4485 6.430451 CGTTACAAAGAAGAGCAAATGAACT 58.570 36.000 0.00 0.00 0.00 3.01
2935 4521 1.963985 AAGGAGGAGGCTTGAGATGT 58.036 50.000 0.00 0.00 0.00 3.06
2944 4530 0.872021 GCTTGAGATGTACGCGGAGG 60.872 60.000 12.47 0.00 0.00 4.30
2974 4560 1.202989 AGATGCTAGAGATCGAGGCCA 60.203 52.381 5.01 0.00 0.00 5.36
3004 4590 1.141053 AGACCAAGGCGAAAGAAGTGT 59.859 47.619 0.00 0.00 0.00 3.55
3009 4595 3.134458 CAAGGCGAAAGAAGTGTCTCTT 58.866 45.455 0.00 0.00 37.24 2.85
3020 4606 3.037431 AGTGTCTCTTGTGAGCATGAC 57.963 47.619 0.00 0.00 40.03 3.06
3092 4678 1.737008 GGCCGTGGTTCGAGAAGAC 60.737 63.158 0.00 0.00 42.86 3.01
3106 4692 3.958147 AAGACGCAGGCCGACATGG 62.958 63.158 0.00 0.00 41.02 3.66
3132 4718 2.753989 TCGACGACGACTGTGTTAAA 57.246 45.000 5.75 0.00 43.81 1.52
3133 4719 2.375110 TCGACGACGACTGTGTTAAAC 58.625 47.619 5.75 0.00 43.81 2.01
3134 4720 2.110990 CGACGACGACTGTGTTAAACA 58.889 47.619 0.00 0.00 42.66 2.83
3135 4721 2.722629 CGACGACGACTGTGTTAAACAT 59.277 45.455 0.00 0.00 42.66 2.71
3136 4722 3.907788 CGACGACGACTGTGTTAAACATA 59.092 43.478 0.00 0.00 42.66 2.29
3137 4723 4.028757 CGACGACGACTGTGTTAAACATAG 59.971 45.833 0.00 0.00 42.18 2.23
3138 4724 5.112220 ACGACGACTGTGTTAAACATAGA 57.888 39.130 0.00 0.00 39.34 1.98
3139 4725 5.706916 ACGACGACTGTGTTAAACATAGAT 58.293 37.500 0.00 0.00 39.34 1.98
3140 4726 6.845302 ACGACGACTGTGTTAAACATAGATA 58.155 36.000 0.00 0.00 39.34 1.98
3141 4727 6.965500 ACGACGACTGTGTTAAACATAGATAG 59.035 38.462 0.00 0.00 39.34 2.08
3142 4728 6.075519 CGACGACTGTGTTAAACATAGATAGC 60.076 42.308 0.00 0.00 39.34 2.97
3143 4729 5.742453 ACGACTGTGTTAAACATAGATAGCG 59.258 40.000 0.00 0.00 39.34 4.26
3144 4730 5.742453 CGACTGTGTTAAACATAGATAGCGT 59.258 40.000 0.00 0.00 39.34 5.07
3145 4731 6.291112 CGACTGTGTTAAACATAGATAGCGTG 60.291 42.308 0.00 0.00 39.34 5.34
3146 4732 6.627243 ACTGTGTTAAACATAGATAGCGTGA 58.373 36.000 0.00 0.00 39.34 4.35
3147 4733 6.530534 ACTGTGTTAAACATAGATAGCGTGAC 59.469 38.462 0.00 0.00 39.34 3.67
3148 4734 6.391537 TGTGTTAAACATAGATAGCGTGACA 58.608 36.000 0.00 0.00 32.36 3.58
3149 4735 6.530181 TGTGTTAAACATAGATAGCGTGACAG 59.470 38.462 0.00 0.00 32.36 3.51
3150 4736 5.518847 TGTTAAACATAGATAGCGTGACAGC 59.481 40.000 0.00 0.00 37.41 4.40
3151 4737 2.802787 ACATAGATAGCGTGACAGCC 57.197 50.000 0.00 0.00 38.01 4.85
3152 4738 2.311463 ACATAGATAGCGTGACAGCCT 58.689 47.619 0.00 0.00 38.01 4.58
3153 4739 3.487372 ACATAGATAGCGTGACAGCCTA 58.513 45.455 0.00 0.00 38.01 3.93
3154 4740 3.504134 ACATAGATAGCGTGACAGCCTAG 59.496 47.826 0.00 0.00 38.01 3.02
3155 4741 1.323412 AGATAGCGTGACAGCCTAGG 58.677 55.000 3.67 3.67 38.01 3.02
3156 4742 1.133761 AGATAGCGTGACAGCCTAGGA 60.134 52.381 14.75 0.00 38.01 2.94
3157 4743 1.268352 GATAGCGTGACAGCCTAGGAG 59.732 57.143 14.75 6.53 38.01 3.69
3158 4744 0.034380 TAGCGTGACAGCCTAGGAGT 60.034 55.000 14.75 10.27 38.01 3.85
3159 4745 0.900647 AGCGTGACAGCCTAGGAGTT 60.901 55.000 14.75 0.00 38.01 3.01
3160 4746 0.815734 GCGTGACAGCCTAGGAGTTA 59.184 55.000 14.75 3.93 0.00 2.24
3161 4747 1.469423 GCGTGACAGCCTAGGAGTTAC 60.469 57.143 14.75 15.22 0.00 2.50
3162 4748 1.816835 CGTGACAGCCTAGGAGTTACA 59.183 52.381 14.75 2.63 0.00 2.41
3163 4749 2.427453 CGTGACAGCCTAGGAGTTACAT 59.573 50.000 14.75 0.00 0.00 2.29
3164 4750 3.119101 CGTGACAGCCTAGGAGTTACATT 60.119 47.826 14.75 0.00 0.00 2.71
3165 4751 4.097437 CGTGACAGCCTAGGAGTTACATTA 59.903 45.833 14.75 0.00 0.00 1.90
3166 4752 5.349809 GTGACAGCCTAGGAGTTACATTAC 58.650 45.833 14.75 0.00 0.00 1.89
3167 4753 5.127356 GTGACAGCCTAGGAGTTACATTACT 59.873 44.000 14.75 0.00 0.00 2.24
3168 4754 5.720041 TGACAGCCTAGGAGTTACATTACTT 59.280 40.000 14.75 0.00 0.00 2.24
3169 4755 5.978814 ACAGCCTAGGAGTTACATTACTTG 58.021 41.667 14.75 0.00 0.00 3.16
3170 4756 5.484290 ACAGCCTAGGAGTTACATTACTTGT 59.516 40.000 14.75 0.00 42.62 3.16
3171 4757 5.812642 CAGCCTAGGAGTTACATTACTTGTG 59.187 44.000 14.75 0.00 39.48 3.33
3172 4758 4.571176 GCCTAGGAGTTACATTACTTGTGC 59.429 45.833 14.75 0.00 39.48 4.57
3173 4759 5.730550 CCTAGGAGTTACATTACTTGTGCA 58.269 41.667 1.05 0.00 39.48 4.57
3174 4760 6.349300 CCTAGGAGTTACATTACTTGTGCAT 58.651 40.000 1.05 0.00 39.48 3.96
3175 4761 6.823689 CCTAGGAGTTACATTACTTGTGCATT 59.176 38.462 1.05 0.00 39.48 3.56
3176 4762 6.500684 AGGAGTTACATTACTTGTGCATTG 57.499 37.500 0.00 0.00 39.48 2.82
3177 4763 6.003950 AGGAGTTACATTACTTGTGCATTGT 58.996 36.000 0.00 0.00 39.48 2.71
3178 4764 7.165485 AGGAGTTACATTACTTGTGCATTGTA 58.835 34.615 0.00 0.00 39.48 2.41
3179 4765 7.829211 AGGAGTTACATTACTTGTGCATTGTAT 59.171 33.333 0.00 0.00 39.48 2.29
3180 4766 8.122952 GGAGTTACATTACTTGTGCATTGTATC 58.877 37.037 0.00 0.00 39.48 2.24
3181 4767 8.560355 AGTTACATTACTTGTGCATTGTATCA 57.440 30.769 0.00 0.00 39.48 2.15
3182 4768 8.668353 AGTTACATTACTTGTGCATTGTATCAG 58.332 33.333 0.00 0.00 39.48 2.90
3183 4769 6.441093 ACATTACTTGTGCATTGTATCAGG 57.559 37.500 0.00 0.00 37.11 3.86
3184 4770 5.945784 ACATTACTTGTGCATTGTATCAGGT 59.054 36.000 0.00 0.00 37.11 4.00
3185 4771 7.109501 ACATTACTTGTGCATTGTATCAGGTA 58.890 34.615 0.00 0.00 37.11 3.08
3186 4772 7.280876 ACATTACTTGTGCATTGTATCAGGTAG 59.719 37.037 0.00 0.00 37.11 3.18
3187 4773 5.165961 ACTTGTGCATTGTATCAGGTAGT 57.834 39.130 0.00 0.00 0.00 2.73
3188 4774 5.560724 ACTTGTGCATTGTATCAGGTAGTT 58.439 37.500 0.00 0.00 0.00 2.24
3189 4775 6.707290 ACTTGTGCATTGTATCAGGTAGTTA 58.293 36.000 0.00 0.00 0.00 2.24
3190 4776 6.818644 ACTTGTGCATTGTATCAGGTAGTTAG 59.181 38.462 0.00 0.00 0.00 2.34
3191 4777 6.538945 TGTGCATTGTATCAGGTAGTTAGA 57.461 37.500 0.00 0.00 0.00 2.10
3192 4778 6.573434 TGTGCATTGTATCAGGTAGTTAGAG 58.427 40.000 0.00 0.00 0.00 2.43
3193 4779 6.379988 TGTGCATTGTATCAGGTAGTTAGAGA 59.620 38.462 0.00 0.00 0.00 3.10
3194 4780 6.920758 GTGCATTGTATCAGGTAGTTAGAGAG 59.079 42.308 0.00 0.00 0.00 3.20
3195 4781 6.040955 TGCATTGTATCAGGTAGTTAGAGAGG 59.959 42.308 0.00 0.00 0.00 3.69
3196 4782 6.265649 GCATTGTATCAGGTAGTTAGAGAGGA 59.734 42.308 0.00 0.00 0.00 3.71
3197 4783 7.039363 GCATTGTATCAGGTAGTTAGAGAGGAT 60.039 40.741 0.00 0.00 0.00 3.24
3198 4784 9.521841 CATTGTATCAGGTAGTTAGAGAGGATA 57.478 37.037 0.00 0.00 0.00 2.59
3201 4787 9.742144 TGTATCAGGTAGTTAGAGAGGATATTC 57.258 37.037 0.00 0.00 0.00 1.75
3202 4788 9.742144 GTATCAGGTAGTTAGAGAGGATATTCA 57.258 37.037 0.00 0.00 0.00 2.57
3204 4790 8.871629 TCAGGTAGTTAGAGAGGATATTCATC 57.128 38.462 0.00 0.00 0.00 2.92
3205 4791 8.674173 TCAGGTAGTTAGAGAGGATATTCATCT 58.326 37.037 0.00 0.00 40.59 2.90
3206 4792 9.308000 CAGGTAGTTAGAGAGGATATTCATCTT 57.692 37.037 0.00 0.00 37.68 2.40
3207 4793 9.308000 AGGTAGTTAGAGAGGATATTCATCTTG 57.692 37.037 0.00 0.00 37.68 3.02
3208 4794 9.084533 GGTAGTTAGAGAGGATATTCATCTTGT 57.915 37.037 0.00 0.00 37.68 3.16
3212 4798 9.699703 GTTAGAGAGGATATTCATCTTGTAACC 57.300 37.037 10.90 0.00 37.68 2.85
3213 4799 7.921041 AGAGAGGATATTCATCTTGTAACCA 57.079 36.000 0.00 0.00 37.68 3.67
3214 4800 8.503428 AGAGAGGATATTCATCTTGTAACCAT 57.497 34.615 0.00 0.00 37.68 3.55
3215 4801 9.607333 AGAGAGGATATTCATCTTGTAACCATA 57.393 33.333 0.00 0.00 37.68 2.74
3216 4802 9.868277 GAGAGGATATTCATCTTGTAACCATAG 57.132 37.037 0.00 0.00 37.68 2.23
3217 4803 9.386122 AGAGGATATTCATCTTGTAACCATAGT 57.614 33.333 0.00 0.00 33.16 2.12
3244 4830 9.574516 ACTTATCTCTATCCTTTCTTCTCTCTC 57.425 37.037 0.00 0.00 0.00 3.20
3245 4831 9.573166 CTTATCTCTATCCTTTCTTCTCTCTCA 57.427 37.037 0.00 0.00 0.00 3.27
3246 4832 9.928618 TTATCTCTATCCTTTCTTCTCTCTCAA 57.071 33.333 0.00 0.00 0.00 3.02
3247 4833 7.880160 TCTCTATCCTTTCTTCTCTCTCAAG 57.120 40.000 0.00 0.00 0.00 3.02
3248 4834 7.638444 TCTCTATCCTTTCTTCTCTCTCAAGA 58.362 38.462 0.00 0.00 0.00 3.02
3249 4835 8.281531 TCTCTATCCTTTCTTCTCTCTCAAGAT 58.718 37.037 0.00 0.00 29.89 2.40
3250 4836 8.837099 TCTATCCTTTCTTCTCTCTCAAGATT 57.163 34.615 0.00 0.00 29.89 2.40
3251 4837 8.694540 TCTATCCTTTCTTCTCTCTCAAGATTG 58.305 37.037 0.00 0.00 29.89 2.67
3252 4838 6.678568 TCCTTTCTTCTCTCTCAAGATTGT 57.321 37.500 0.00 0.00 29.89 2.71
3253 4839 7.782897 TCCTTTCTTCTCTCTCAAGATTGTA 57.217 36.000 0.00 0.00 29.89 2.41
3254 4840 8.195165 TCCTTTCTTCTCTCTCAAGATTGTAA 57.805 34.615 0.00 0.00 29.89 2.41
3255 4841 8.820831 TCCTTTCTTCTCTCTCAAGATTGTAAT 58.179 33.333 0.00 0.00 29.89 1.89
3256 4842 9.097257 CCTTTCTTCTCTCTCAAGATTGTAATC 57.903 37.037 0.00 0.00 35.64 1.75
3258 4844 9.868277 TTTCTTCTCTCTCAAGATTGTAATCTC 57.132 33.333 7.52 0.00 44.67 2.75
3259 4845 8.006298 TCTTCTCTCTCAAGATTGTAATCTCC 57.994 38.462 7.52 0.00 44.67 3.71
3260 4846 7.617329 TCTTCTCTCTCAAGATTGTAATCTCCA 59.383 37.037 7.52 0.00 44.67 3.86
3261 4847 7.724490 TCTCTCTCAAGATTGTAATCTCCAA 57.276 36.000 7.52 0.00 44.67 3.53
3262 4848 7.551585 TCTCTCTCAAGATTGTAATCTCCAAC 58.448 38.462 7.52 0.00 44.67 3.77
3263 4849 7.398618 TCTCTCTCAAGATTGTAATCTCCAACT 59.601 37.037 7.52 0.00 44.67 3.16
3264 4850 7.326454 TCTCTCAAGATTGTAATCTCCAACTG 58.674 38.462 7.52 2.98 44.67 3.16
3265 4851 7.009179 TCTCAAGATTGTAATCTCCAACTGT 57.991 36.000 7.52 0.00 44.67 3.55
3266 4852 8.134202 TCTCAAGATTGTAATCTCCAACTGTA 57.866 34.615 7.52 0.00 44.67 2.74
3267 4853 8.762645 TCTCAAGATTGTAATCTCCAACTGTAT 58.237 33.333 7.52 0.00 44.67 2.29
3268 4854 8.722480 TCAAGATTGTAATCTCCAACTGTATG 57.278 34.615 7.52 0.50 44.67 2.39
3269 4855 7.280876 TCAAGATTGTAATCTCCAACTGTATGC 59.719 37.037 7.52 0.00 44.67 3.14
3270 4856 5.755375 AGATTGTAATCTCCAACTGTATGCG 59.245 40.000 1.35 0.00 41.82 4.73
3271 4857 3.194861 TGTAATCTCCAACTGTATGCGC 58.805 45.455 0.00 0.00 0.00 6.09
3272 4858 2.698855 AATCTCCAACTGTATGCGCT 57.301 45.000 9.73 0.00 0.00 5.92
3273 4859 3.819564 AATCTCCAACTGTATGCGCTA 57.180 42.857 9.73 0.00 0.00 4.26
3274 4860 4.342862 AATCTCCAACTGTATGCGCTAT 57.657 40.909 9.73 3.00 0.00 2.97
3275 4861 3.371102 TCTCCAACTGTATGCGCTATC 57.629 47.619 9.73 0.00 0.00 2.08
3276 4862 2.035961 TCTCCAACTGTATGCGCTATCC 59.964 50.000 9.73 0.00 0.00 2.59
3277 4863 1.070134 TCCAACTGTATGCGCTATCCC 59.930 52.381 9.73 0.00 0.00 3.85
3278 4864 1.202639 CCAACTGTATGCGCTATCCCA 60.203 52.381 9.73 0.00 0.00 4.37
3279 4865 2.138320 CAACTGTATGCGCTATCCCAG 58.862 52.381 9.73 10.02 0.00 4.45
3280 4866 0.681733 ACTGTATGCGCTATCCCAGG 59.318 55.000 9.73 0.00 0.00 4.45
3281 4867 0.036952 CTGTATGCGCTATCCCAGGG 60.037 60.000 9.73 0.00 40.15 4.45
3282 4868 0.471022 TGTATGCGCTATCCCAGGGA 60.471 55.000 11.90 11.90 39.56 4.20
3283 4869 0.247736 GTATGCGCTATCCCAGGGAG 59.752 60.000 15.44 1.82 39.56 4.30
3284 4870 0.904865 TATGCGCTATCCCAGGGAGG 60.905 60.000 15.44 10.49 39.56 4.30
3285 4871 2.844839 GCGCTATCCCAGGGAGGT 60.845 66.667 15.44 0.00 39.56 3.85
3286 4872 3.142393 CGCTATCCCAGGGAGGTG 58.858 66.667 15.44 11.97 39.56 4.00
3287 4873 2.832498 GCTATCCCAGGGAGGTGC 59.168 66.667 15.44 13.78 34.05 5.01
3288 4874 3.142393 CTATCCCAGGGAGGTGCG 58.858 66.667 15.44 0.00 34.05 5.34
3289 4875 3.161450 TATCCCAGGGAGGTGCGC 61.161 66.667 15.44 0.00 34.05 6.09
3299 4885 4.715130 AGGTGCGCCCCTGGTCTA 62.715 66.667 11.85 0.00 32.11 2.59
3300 4886 3.480133 GGTGCGCCCCTGGTCTAT 61.480 66.667 4.45 0.00 0.00 1.98
3301 4887 2.138179 GGTGCGCCCCTGGTCTATA 61.138 63.158 4.45 0.00 0.00 1.31
3302 4888 1.692173 GGTGCGCCCCTGGTCTATAA 61.692 60.000 4.45 0.00 0.00 0.98
3303 4889 0.179468 GTGCGCCCCTGGTCTATAAA 59.821 55.000 4.18 0.00 0.00 1.40
3304 4890 0.179468 TGCGCCCCTGGTCTATAAAC 59.821 55.000 4.18 0.00 0.00 2.01
3305 4891 0.179468 GCGCCCCTGGTCTATAAACA 59.821 55.000 0.00 0.00 0.00 2.83
3306 4892 1.949465 CGCCCCTGGTCTATAAACAC 58.051 55.000 0.00 0.00 0.00 3.32
3307 4893 1.805120 CGCCCCTGGTCTATAAACACG 60.805 57.143 0.00 0.00 0.00 4.49
3308 4894 1.208776 GCCCCTGGTCTATAAACACGT 59.791 52.381 0.00 0.00 0.00 4.49
3309 4895 2.431782 GCCCCTGGTCTATAAACACGTA 59.568 50.000 0.00 0.00 0.00 3.57
3310 4896 3.118665 GCCCCTGGTCTATAAACACGTAA 60.119 47.826 0.00 0.00 0.00 3.18
3311 4897 4.436332 CCCCTGGTCTATAAACACGTAAC 58.564 47.826 0.00 0.00 0.00 2.50
3312 4898 4.081531 CCCCTGGTCTATAAACACGTAACA 60.082 45.833 0.00 0.00 0.00 2.41
3313 4899 5.107133 CCCTGGTCTATAAACACGTAACAG 58.893 45.833 0.00 0.00 0.00 3.16
3314 4900 4.565564 CCTGGTCTATAAACACGTAACAGC 59.434 45.833 0.00 0.00 0.00 4.40
3315 4901 4.168014 TGGTCTATAAACACGTAACAGCG 58.832 43.478 0.00 0.00 37.94 5.18
3316 4902 3.000376 GGTCTATAAACACGTAACAGCGC 60.000 47.826 0.00 0.00 34.88 5.92
3317 4903 3.000376 GTCTATAAACACGTAACAGCGCC 60.000 47.826 2.29 0.00 34.88 6.53
3318 4904 1.081094 ATAAACACGTAACAGCGCCC 58.919 50.000 2.29 0.00 34.88 6.13
3319 4905 0.950071 TAAACACGTAACAGCGCCCC 60.950 55.000 2.29 0.00 34.88 5.80
3320 4906 2.669777 AAACACGTAACAGCGCCCCT 62.670 55.000 2.29 0.00 34.88 4.79
3321 4907 2.813908 CACGTAACAGCGCCCCTC 60.814 66.667 2.29 0.00 34.88 4.30
3322 4908 3.307906 ACGTAACAGCGCCCCTCA 61.308 61.111 2.29 0.00 34.88 3.86
3323 4909 2.186903 CGTAACAGCGCCCCTCAT 59.813 61.111 2.29 0.00 0.00 2.90
3324 4910 2.173669 CGTAACAGCGCCCCTCATG 61.174 63.158 2.29 0.00 0.00 3.07
3325 4911 1.220749 GTAACAGCGCCCCTCATGA 59.779 57.895 2.29 0.00 0.00 3.07
3326 4912 0.179045 GTAACAGCGCCCCTCATGAT 60.179 55.000 2.29 0.00 0.00 2.45
3327 4913 0.179048 TAACAGCGCCCCTCATGATG 60.179 55.000 2.29 0.00 0.00 3.07
3328 4914 1.913951 AACAGCGCCCCTCATGATGA 61.914 55.000 2.29 0.00 0.00 2.92
3329 4915 1.597302 CAGCGCCCCTCATGATGAG 60.597 63.158 15.38 15.38 43.91 2.90
3342 4928 6.542574 CTCATGATGAGGTAAGATGCTTTC 57.457 41.667 14.56 0.00 40.71 2.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.870538 ACTTCCTCCGTTTTTACCCTT 57.129 42.857 0.00 0.00 0.00 3.95
1 2 5.509832 AATACTTCCTCCGTTTTTACCCT 57.490 39.130 0.00 0.00 0.00 4.34
8 9 8.295288 CGACACTATATAATACTTCCTCCGTTT 58.705 37.037 0.00 0.00 0.00 3.60
9 10 7.446625 ACGACACTATATAATACTTCCTCCGTT 59.553 37.037 0.00 0.00 0.00 4.44
10 11 6.939163 ACGACACTATATAATACTTCCTCCGT 59.061 38.462 0.00 0.00 0.00 4.69
11 12 7.375106 ACGACACTATATAATACTTCCTCCG 57.625 40.000 0.00 0.00 0.00 4.63
12 13 9.978044 AAAACGACACTATATAATACTTCCTCC 57.022 33.333 0.00 0.00 0.00 4.30
44 45 1.335324 CGGAAAAGGCTTTGCTGTCTG 60.335 52.381 17.34 10.54 31.07 3.51
45 46 0.954452 CGGAAAAGGCTTTGCTGTCT 59.046 50.000 17.34 0.00 31.07 3.41
49 50 0.467290 TCACCGGAAAAGGCTTTGCT 60.467 50.000 17.32 0.48 31.07 3.91
51 52 2.295909 TCATTCACCGGAAAAGGCTTTG 59.704 45.455 14.19 3.27 36.43 2.77
63 64 6.017109 CCTTTATCCCAAAGTATCATTCACCG 60.017 42.308 0.00 0.00 0.00 4.94
64 65 7.013369 GTCCTTTATCCCAAAGTATCATTCACC 59.987 40.741 0.00 0.00 0.00 4.02
97 98 7.615365 AGTTTTATCACCATAAGCATCAAAGGA 59.385 33.333 0.00 0.00 0.00 3.36
144 145 5.365619 ACTATTTGTTGTCCCGGCTATTAG 58.634 41.667 0.00 0.00 0.00 1.73
145 146 5.362105 ACTATTTGTTGTCCCGGCTATTA 57.638 39.130 0.00 0.00 0.00 0.98
155 156 6.038997 ACAGAGGGAGTACTATTTGTTGTC 57.961 41.667 0.00 0.00 0.00 3.18
163 164 4.348020 TTTGGGACAGAGGGAGTACTAT 57.652 45.455 0.00 0.00 42.39 2.12
165 166 2.715763 TTTGGGACAGAGGGAGTACT 57.284 50.000 0.00 0.00 42.39 2.73
166 167 5.632034 ATATTTTGGGACAGAGGGAGTAC 57.368 43.478 0.00 0.00 42.39 2.73
167 168 7.136885 TCTTATATTTTGGGACAGAGGGAGTA 58.863 38.462 0.00 0.00 42.39 2.59
170 171 6.216662 TGTTCTTATATTTTGGGACAGAGGGA 59.783 38.462 0.00 0.00 42.39 4.20
171 172 6.423182 TGTTCTTATATTTTGGGACAGAGGG 58.577 40.000 0.00 0.00 42.39 4.30
172 173 8.525290 AATGTTCTTATATTTTGGGACAGAGG 57.475 34.615 0.00 0.00 42.39 3.69
189 190 8.732746 ACTAGTGTAGTGTCAAAAATGTTCTT 57.267 30.769 0.00 0.00 37.69 2.52
204 205 6.335777 AGAACGTTTTTGACACTAGTGTAGT 58.664 36.000 27.98 15.35 45.05 2.73
205 206 6.823678 AGAACGTTTTTGACACTAGTGTAG 57.176 37.500 27.98 14.79 45.05 2.74
206 207 8.876275 ATAAGAACGTTTTTGACACTAGTGTA 57.124 30.769 27.98 11.50 45.05 2.90
213 214 9.498307 CCCATAATATAAGAACGTTTTTGACAC 57.502 33.333 13.87 0.00 0.00 3.67
214 215 9.451002 TCCCATAATATAAGAACGTTTTTGACA 57.549 29.630 13.87 0.01 0.00 3.58
215 216 9.712359 GTCCCATAATATAAGAACGTTTTTGAC 57.288 33.333 13.87 5.89 0.00 3.18
216 217 8.605746 CGTCCCATAATATAAGAACGTTTTTGA 58.394 33.333 13.87 2.81 0.00 2.69
217 218 7.853929 CCGTCCCATAATATAAGAACGTTTTTG 59.146 37.037 13.87 0.00 0.00 2.44
218 219 7.769970 TCCGTCCCATAATATAAGAACGTTTTT 59.230 33.333 9.22 9.22 0.00 1.94
219 220 7.274447 TCCGTCCCATAATATAAGAACGTTTT 58.726 34.615 0.46 0.00 0.00 2.43
220 221 6.819284 TCCGTCCCATAATATAAGAACGTTT 58.181 36.000 0.46 0.00 0.00 3.60
221 222 6.409524 TCCGTCCCATAATATAAGAACGTT 57.590 37.500 0.00 0.00 0.00 3.99
222 223 5.047519 CCTCCGTCCCATAATATAAGAACGT 60.048 44.000 0.00 0.00 0.00 3.99
223 224 5.408356 CCTCCGTCCCATAATATAAGAACG 58.592 45.833 0.00 0.00 0.00 3.95
224 225 5.482878 TCCCTCCGTCCCATAATATAAGAAC 59.517 44.000 0.00 0.00 0.00 3.01
225 226 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
226 227 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
227 228 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
228 229 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
229 230 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
230 231 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
231 232 3.400322 AGTACTCCCTCCGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
232 233 2.179424 AGTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
233 234 1.572415 AGTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
234 235 1.229131 AGTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
235 236 0.338814 AAGTACTCCCTCCGTCCCAT 59.661 55.000 0.00 0.00 0.00 4.00
236 237 0.115745 AAAGTACTCCCTCCGTCCCA 59.884 55.000 0.00 0.00 0.00 4.37
237 238 1.273759 AAAAGTACTCCCTCCGTCCC 58.726 55.000 0.00 0.00 0.00 4.46
300 301 2.565841 GAAGAAGCCAAGTCTGTGTGT 58.434 47.619 0.00 0.00 0.00 3.72
302 303 1.541233 CGGAAGAAGCCAAGTCTGTGT 60.541 52.381 0.00 0.00 0.00 3.72
305 306 2.169832 TTCGGAAGAAGCCAAGTCTG 57.830 50.000 0.00 0.00 46.92 3.51
335 336 5.932883 TGTGTGTGTGTTAGTGTTGTCTTTA 59.067 36.000 0.00 0.00 0.00 1.85
340 341 3.403968 TGTGTGTGTGTGTTAGTGTTGT 58.596 40.909 0.00 0.00 0.00 3.32
349 350 2.997980 TGATCCTTTGTGTGTGTGTGT 58.002 42.857 0.00 0.00 0.00 3.72
350 351 3.378112 ACTTGATCCTTTGTGTGTGTGTG 59.622 43.478 0.00 0.00 0.00 3.82
351 352 3.620488 ACTTGATCCTTTGTGTGTGTGT 58.380 40.909 0.00 0.00 0.00 3.72
352 353 3.627123 TGACTTGATCCTTTGTGTGTGTG 59.373 43.478 0.00 0.00 0.00 3.82
362 363 9.482627 GTTTCGATCTTATATGACTTGATCCTT 57.517 33.333 0.00 0.00 32.36 3.36
374 375 7.116376 CGTGTAGGCATTGTTTCGATCTTATAT 59.884 37.037 0.00 0.00 0.00 0.86
421 422 8.398665 GTGGATTATCGTTGCTATTTTCTCTTT 58.601 33.333 0.00 0.00 0.00 2.52
478 479 1.348538 CGGAATCGCGTGTGCTTACA 61.349 55.000 5.77 0.00 39.65 2.41
502 503 0.598158 TAGTTTGCGTGGTCGTGTCC 60.598 55.000 0.00 0.00 39.49 4.02
507 508 1.193874 GGTTTCTAGTTTGCGTGGTCG 59.806 52.381 0.00 0.00 40.37 4.79
508 509 1.193874 CGGTTTCTAGTTTGCGTGGTC 59.806 52.381 0.00 0.00 0.00 4.02
552 625 3.616821 TCCGCAAATGTCTCTTACAATCG 59.383 43.478 0.00 0.00 42.70 3.34
556 629 2.346803 GCTCCGCAAATGTCTCTTACA 58.653 47.619 0.00 0.00 43.86 2.41
564 700 1.137872 TGTTTTTGGCTCCGCAAATGT 59.862 42.857 0.00 0.00 0.00 2.71
566 702 2.837532 ATGTTTTTGGCTCCGCAAAT 57.162 40.000 0.00 0.00 0.00 2.32
569 705 1.137872 ACAAATGTTTTTGGCTCCGCA 59.862 42.857 3.76 0.00 45.34 5.69
571 707 2.050691 CGACAAATGTTTTTGGCTCCG 58.949 47.619 3.09 0.00 46.83 4.63
587 723 1.470805 CCCGTTACTCATGCATCGACA 60.471 52.381 0.00 0.00 0.00 4.35
607 743 1.019805 GGGTAACTGTGGCTTCTCGC 61.020 60.000 0.00 0.00 38.13 5.03
616 752 8.655651 AAAATAAAACATTGTGGGTAACTGTG 57.344 30.769 0.00 0.00 0.00 3.66
620 756 8.664211 TGGAAAAATAAAACATTGTGGGTAAC 57.336 30.769 0.00 0.00 0.00 2.50
650 788 3.118112 ACAGCTTCAGTGCTTGCCTATAT 60.118 43.478 0.00 0.00 41.98 0.86
661 799 0.664761 CCCACAACACAGCTTCAGTG 59.335 55.000 1.32 1.32 42.56 3.66
664 802 1.955778 CAATCCCACAACACAGCTTCA 59.044 47.619 0.00 0.00 0.00 3.02
681 819 2.715046 CTGTGAGCATGGGTGTACAAT 58.285 47.619 0.00 0.00 0.00 2.71
684 822 1.026718 GGCTGTGAGCATGGGTGTAC 61.027 60.000 0.00 0.00 44.75 2.90
685 823 1.200760 AGGCTGTGAGCATGGGTGTA 61.201 55.000 0.00 0.00 44.75 2.90
686 824 2.034687 GGCTGTGAGCATGGGTGT 59.965 61.111 0.00 0.00 44.75 4.16
687 825 1.303888 AAGGCTGTGAGCATGGGTG 60.304 57.895 0.00 0.00 44.75 4.61
688 826 1.001641 GAAGGCTGTGAGCATGGGT 60.002 57.895 0.00 0.00 44.75 4.51
689 827 2.110967 CGAAGGCTGTGAGCATGGG 61.111 63.158 0.00 0.00 44.75 4.00
690 828 0.957395 AACGAAGGCTGTGAGCATGG 60.957 55.000 0.00 0.00 44.75 3.66
691 829 0.167470 CAACGAAGGCTGTGAGCATG 59.833 55.000 0.00 0.00 44.75 4.06
692 830 1.580845 GCAACGAAGGCTGTGAGCAT 61.581 55.000 0.00 0.00 44.75 3.79
693 831 2.253758 GCAACGAAGGCTGTGAGCA 61.254 57.895 0.00 0.00 44.75 4.26
694 832 1.510480 AAGCAACGAAGGCTGTGAGC 61.510 55.000 0.00 0.00 41.66 4.26
695 833 0.947244 AAAGCAACGAAGGCTGTGAG 59.053 50.000 0.00 0.00 41.66 3.51
855 2223 0.603065 GCCGGCATCAACCTTTTCTT 59.397 50.000 24.80 0.00 0.00 2.52
937 2311 2.716217 AGTTAGGCACTGGAATGAAGC 58.284 47.619 0.00 0.00 41.52 3.86
948 2322 4.081087 TGGGATTGTAGAGAAGTTAGGCAC 60.081 45.833 0.00 0.00 0.00 5.01
960 2334 4.069304 CTCGTTTTGGTTGGGATTGTAGA 58.931 43.478 0.00 0.00 0.00 2.59
967 2341 2.223745 GTTAGCTCGTTTTGGTTGGGA 58.776 47.619 0.00 0.00 0.00 4.37
973 2347 3.982576 AGGTTTGTTAGCTCGTTTTGG 57.017 42.857 0.00 0.00 0.00 3.28
1014 2388 2.484264 CACAAGTAGCAAGCAGGGTAAC 59.516 50.000 0.00 0.00 0.00 2.50
1041 2415 0.816825 CACAACAGAGTGCCAGTGCT 60.817 55.000 0.00 0.00 38.71 4.40
1414 2795 0.974383 ACCCTACAGAAGAACACCCG 59.026 55.000 0.00 0.00 0.00 5.28
1489 2870 0.032678 AGGCATACGGATTGAGCTCG 59.967 55.000 9.64 0.00 0.00 5.03
1562 2999 1.604693 GCTATGCATGCTTCCATTGGC 60.605 52.381 20.33 8.16 0.00 4.52
1563 3000 1.961394 AGCTATGCATGCTTCCATTGG 59.039 47.619 20.33 0.00 37.52 3.16
1848 3289 5.066634 TCTCCAGCTATGTAGAACTCTTTCG 59.933 44.000 0.00 0.00 36.78 3.46
1938 3483 5.023452 TCCAGTGGCAAGAGAACTAGAATA 58.977 41.667 3.51 0.00 0.00 1.75
1945 3495 2.079925 GTGATCCAGTGGCAAGAGAAC 58.920 52.381 3.51 0.00 0.00 3.01
1982 3532 2.923655 CACGATGACATTCGCTAACTGT 59.076 45.455 0.00 0.00 42.82 3.55
2130 3685 1.687628 GCGTTCCCGATCTAGAATCG 58.312 55.000 14.07 14.07 40.86 3.34
2400 3981 3.314331 AGTGTCCGCCAGGTGAGG 61.314 66.667 0.00 0.00 39.05 3.86
2401 3982 2.047844 CAGTGTCCGCCAGGTGAG 60.048 66.667 0.00 0.00 39.05 3.51
2402 3983 4.314440 GCAGTGTCCGCCAGGTGA 62.314 66.667 0.00 0.00 39.05 4.02
2403 3984 4.320456 AGCAGTGTCCGCCAGGTG 62.320 66.667 0.00 0.00 39.05 4.00
2404 3985 4.320456 CAGCAGTGTCCGCCAGGT 62.320 66.667 0.00 0.00 39.05 4.00
2411 3992 4.314440 TGTCGGCCAGCAGTGTCC 62.314 66.667 2.24 0.00 0.00 4.02
2412 3993 2.740055 CTGTCGGCCAGCAGTGTC 60.740 66.667 13.68 0.00 33.59 3.67
2509 4091 5.299028 ACACAAGCATAAACAGAATGACACA 59.701 36.000 0.00 0.00 39.69 3.72
2519 4101 5.233902 GCAAATGAACACACAAGCATAAACA 59.766 36.000 0.00 0.00 0.00 2.83
2553 4137 7.999450 TTGTATATCATGCAAGCATATTGGA 57.001 32.000 7.29 1.35 34.91 3.53
2571 4156 6.364701 AGCTTGAAATGCCTACCATTGTATA 58.635 36.000 0.00 0.00 43.22 1.47
2577 4162 3.196254 CCAAAGCTTGAAATGCCTACCAT 59.804 43.478 0.00 0.00 37.80 3.55
2579 4164 2.825532 TCCAAAGCTTGAAATGCCTACC 59.174 45.455 0.00 0.00 37.80 3.18
2617 4202 2.397549 GTTGAAGCACTTGCCATTGTC 58.602 47.619 0.00 0.00 43.38 3.18
2666 4251 1.201647 CGCCTTGAACTTCTCCTCGTA 59.798 52.381 0.00 0.00 0.00 3.43
2754 4339 2.753043 GTCTCCCCCGCAGTCGTA 60.753 66.667 0.00 0.00 0.00 3.43
2760 4345 3.319198 GAGTTGGTCTCCCCCGCA 61.319 66.667 0.00 0.00 37.22 5.69
2821 4407 0.627451 ATCATGCCCTCCAAGCTTGA 59.373 50.000 28.05 12.59 45.12 3.02
2827 4413 0.332293 TTGCTCATCATGCCCTCCAA 59.668 50.000 0.00 0.00 0.00 3.53
2935 4521 4.143333 GGCTTGCTCCTCCGCGTA 62.143 66.667 4.92 0.00 0.00 4.42
2944 4530 2.158986 TCTCTAGCATCTTGGCTTGCTC 60.159 50.000 0.00 0.00 45.83 4.26
2974 4560 1.528309 CCTTGGTCTTGGCGTTGGT 60.528 57.895 0.00 0.00 0.00 3.67
3004 4590 1.067565 GGTCGTCATGCTCACAAGAGA 60.068 52.381 0.00 0.00 44.98 3.10
3009 4595 2.261361 CCGGTCGTCATGCTCACA 59.739 61.111 0.00 0.00 0.00 3.58
3020 4606 2.134287 ATGATCTCCACCCCGGTCG 61.134 63.158 0.00 0.00 35.57 4.79
3092 4678 4.758251 TGACCATGTCGGCCTGCG 62.758 66.667 0.00 0.00 39.03 5.18
3123 4709 6.530181 TGTCACGCTATCTATGTTTAACACAG 59.470 38.462 0.00 0.00 39.40 3.66
3126 4712 5.518847 GCTGTCACGCTATCTATGTTTAACA 59.481 40.000 0.00 0.00 0.00 2.41
3127 4713 5.050972 GGCTGTCACGCTATCTATGTTTAAC 60.051 44.000 0.00 0.00 0.00 2.01
3128 4714 5.047847 GGCTGTCACGCTATCTATGTTTAA 58.952 41.667 0.00 0.00 0.00 1.52
3129 4715 4.341235 AGGCTGTCACGCTATCTATGTTTA 59.659 41.667 0.00 0.00 0.00 2.01
3130 4716 3.133003 AGGCTGTCACGCTATCTATGTTT 59.867 43.478 0.00 0.00 0.00 2.83
3131 4717 2.695666 AGGCTGTCACGCTATCTATGTT 59.304 45.455 0.00 0.00 0.00 2.71
3132 4718 2.311463 AGGCTGTCACGCTATCTATGT 58.689 47.619 0.00 0.00 0.00 2.29
3133 4719 3.119673 CCTAGGCTGTCACGCTATCTATG 60.120 52.174 0.00 0.00 0.00 2.23
3134 4720 3.085533 CCTAGGCTGTCACGCTATCTAT 58.914 50.000 0.00 0.00 0.00 1.98
3135 4721 2.105993 TCCTAGGCTGTCACGCTATCTA 59.894 50.000 2.96 0.00 0.00 1.98
3136 4722 1.133761 TCCTAGGCTGTCACGCTATCT 60.134 52.381 2.96 0.00 0.00 1.98
3137 4723 1.268352 CTCCTAGGCTGTCACGCTATC 59.732 57.143 2.96 0.00 0.00 2.08
3138 4724 1.323412 CTCCTAGGCTGTCACGCTAT 58.677 55.000 2.96 0.00 0.00 2.97
3139 4725 0.034380 ACTCCTAGGCTGTCACGCTA 60.034 55.000 2.96 0.00 0.00 4.26
3140 4726 0.900647 AACTCCTAGGCTGTCACGCT 60.901 55.000 2.96 0.00 0.00 5.07
3141 4727 0.815734 TAACTCCTAGGCTGTCACGC 59.184 55.000 2.96 0.00 0.00 5.34
3142 4728 1.816835 TGTAACTCCTAGGCTGTCACG 59.183 52.381 2.96 0.00 0.00 4.35
3143 4729 4.473477 AATGTAACTCCTAGGCTGTCAC 57.527 45.455 2.96 2.50 0.00 3.67
3144 4730 5.269991 AGTAATGTAACTCCTAGGCTGTCA 58.730 41.667 2.96 1.64 0.00 3.58
3145 4731 5.855740 AGTAATGTAACTCCTAGGCTGTC 57.144 43.478 2.96 0.00 0.00 3.51
3146 4732 5.484290 ACAAGTAATGTAACTCCTAGGCTGT 59.516 40.000 2.96 2.38 41.63 4.40
3147 4733 5.812642 CACAAGTAATGTAACTCCTAGGCTG 59.187 44.000 2.96 1.67 41.46 4.85
3148 4734 5.627040 GCACAAGTAATGTAACTCCTAGGCT 60.627 44.000 2.96 0.00 41.46 4.58
3149 4735 4.571176 GCACAAGTAATGTAACTCCTAGGC 59.429 45.833 2.96 0.00 41.46 3.93
3150 4736 5.730550 TGCACAAGTAATGTAACTCCTAGG 58.269 41.667 0.82 0.82 41.46 3.02
3151 4737 7.334421 ACAATGCACAAGTAATGTAACTCCTAG 59.666 37.037 0.00 0.00 41.46 3.02
3152 4738 7.165485 ACAATGCACAAGTAATGTAACTCCTA 58.835 34.615 0.00 0.00 41.46 2.94
3153 4739 6.003950 ACAATGCACAAGTAATGTAACTCCT 58.996 36.000 0.00 0.00 41.46 3.69
3154 4740 6.254281 ACAATGCACAAGTAATGTAACTCC 57.746 37.500 0.00 0.00 41.46 3.85
3155 4741 8.664798 TGATACAATGCACAAGTAATGTAACTC 58.335 33.333 0.00 0.00 41.46 3.01
3156 4742 8.560355 TGATACAATGCACAAGTAATGTAACT 57.440 30.769 0.00 0.00 41.46 2.24
3157 4743 7.910162 CCTGATACAATGCACAAGTAATGTAAC 59.090 37.037 0.00 0.00 41.46 2.50
3158 4744 7.609918 ACCTGATACAATGCACAAGTAATGTAA 59.390 33.333 0.00 0.00 41.46 2.41
3159 4745 7.109501 ACCTGATACAATGCACAAGTAATGTA 58.890 34.615 0.00 0.00 41.46 2.29
3160 4746 5.945784 ACCTGATACAATGCACAAGTAATGT 59.054 36.000 0.00 0.00 45.34 2.71
3161 4747 6.441093 ACCTGATACAATGCACAAGTAATG 57.559 37.500 0.00 0.00 0.00 1.90
3162 4748 7.338710 ACTACCTGATACAATGCACAAGTAAT 58.661 34.615 0.00 0.00 0.00 1.89
3163 4749 6.707290 ACTACCTGATACAATGCACAAGTAA 58.293 36.000 0.00 0.00 0.00 2.24
3164 4750 6.294361 ACTACCTGATACAATGCACAAGTA 57.706 37.500 0.00 0.00 0.00 2.24
3165 4751 5.165961 ACTACCTGATACAATGCACAAGT 57.834 39.130 0.00 0.00 0.00 3.16
3166 4752 7.041721 TCTAACTACCTGATACAATGCACAAG 58.958 38.462 0.00 0.00 0.00 3.16
3167 4753 6.941857 TCTAACTACCTGATACAATGCACAA 58.058 36.000 0.00 0.00 0.00 3.33
3168 4754 6.379988 TCTCTAACTACCTGATACAATGCACA 59.620 38.462 0.00 0.00 0.00 4.57
3169 4755 6.806751 TCTCTAACTACCTGATACAATGCAC 58.193 40.000 0.00 0.00 0.00 4.57
3170 4756 6.040955 CCTCTCTAACTACCTGATACAATGCA 59.959 42.308 0.00 0.00 0.00 3.96
3171 4757 6.265649 TCCTCTCTAACTACCTGATACAATGC 59.734 42.308 0.00 0.00 0.00 3.56
3172 4758 7.825331 TCCTCTCTAACTACCTGATACAATG 57.175 40.000 0.00 0.00 0.00 2.82
3175 4761 9.742144 GAATATCCTCTCTAACTACCTGATACA 57.258 37.037 0.00 0.00 0.00 2.29
3176 4762 9.742144 TGAATATCCTCTCTAACTACCTGATAC 57.258 37.037 0.00 0.00 0.00 2.24
3178 4764 9.474313 GATGAATATCCTCTCTAACTACCTGAT 57.526 37.037 0.00 0.00 0.00 2.90
3179 4765 8.674173 AGATGAATATCCTCTCTAACTACCTGA 58.326 37.037 0.00 0.00 33.64 3.86
3180 4766 8.877864 AGATGAATATCCTCTCTAACTACCTG 57.122 38.462 0.00 0.00 33.64 4.00
3181 4767 9.308000 CAAGATGAATATCCTCTCTAACTACCT 57.692 37.037 0.00 0.00 33.64 3.08
3182 4768 9.084533 ACAAGATGAATATCCTCTCTAACTACC 57.915 37.037 0.00 0.00 33.64 3.18
3186 4772 9.699703 GGTTACAAGATGAATATCCTCTCTAAC 57.300 37.037 0.00 0.00 33.64 2.34
3187 4773 9.434275 TGGTTACAAGATGAATATCCTCTCTAA 57.566 33.333 0.00 0.00 33.64 2.10
3188 4774 9.607333 ATGGTTACAAGATGAATATCCTCTCTA 57.393 33.333 0.00 0.00 33.64 2.43
3189 4775 7.921041 TGGTTACAAGATGAATATCCTCTCT 57.079 36.000 0.00 0.00 33.64 3.10
3190 4776 9.868277 CTATGGTTACAAGATGAATATCCTCTC 57.132 37.037 0.00 0.00 33.64 3.20
3191 4777 9.386122 ACTATGGTTACAAGATGAATATCCTCT 57.614 33.333 0.00 0.00 33.64 3.69
3218 4804 9.574516 GAGAGAGAAGAAAGGATAGAGATAAGT 57.425 37.037 0.00 0.00 0.00 2.24
3219 4805 9.573166 TGAGAGAGAAGAAAGGATAGAGATAAG 57.427 37.037 0.00 0.00 0.00 1.73
3220 4806 9.928618 TTGAGAGAGAAGAAAGGATAGAGATAA 57.071 33.333 0.00 0.00 0.00 1.75
3221 4807 9.573166 CTTGAGAGAGAAGAAAGGATAGAGATA 57.427 37.037 0.00 0.00 0.00 1.98
3222 4808 8.281531 TCTTGAGAGAGAAGAAAGGATAGAGAT 58.718 37.037 0.00 0.00 0.00 2.75
3223 4809 7.638444 TCTTGAGAGAGAAGAAAGGATAGAGA 58.362 38.462 0.00 0.00 0.00 3.10
3224 4810 7.880160 TCTTGAGAGAGAAGAAAGGATAGAG 57.120 40.000 0.00 0.00 0.00 2.43
3225 4811 8.694540 CAATCTTGAGAGAGAAGAAAGGATAGA 58.305 37.037 0.00 0.00 34.85 1.98
3226 4812 8.477256 ACAATCTTGAGAGAGAAGAAAGGATAG 58.523 37.037 0.00 0.00 34.85 2.08
3227 4813 8.372877 ACAATCTTGAGAGAGAAGAAAGGATA 57.627 34.615 0.00 0.00 34.85 2.59
3228 4814 7.256494 ACAATCTTGAGAGAGAAGAAAGGAT 57.744 36.000 0.00 0.00 34.85 3.24
3229 4815 6.678568 ACAATCTTGAGAGAGAAGAAAGGA 57.321 37.500 0.00 0.00 34.85 3.36
3230 4816 9.097257 GATTACAATCTTGAGAGAGAAGAAAGG 57.903 37.037 0.00 0.00 34.85 3.11
3231 4817 9.874205 AGATTACAATCTTGAGAGAGAAGAAAG 57.126 33.333 0.00 0.00 42.96 2.62
3232 4818 9.868277 GAGATTACAATCTTGAGAGAGAAGAAA 57.132 33.333 5.95 0.00 45.39 2.52
3233 4819 8.474025 GGAGATTACAATCTTGAGAGAGAAGAA 58.526 37.037 5.95 0.00 45.39 2.52
3234 4820 7.617329 TGGAGATTACAATCTTGAGAGAGAAGA 59.383 37.037 5.95 0.00 45.39 2.87
3235 4821 7.780064 TGGAGATTACAATCTTGAGAGAGAAG 58.220 38.462 5.95 0.00 45.39 2.85
3236 4822 7.724490 TGGAGATTACAATCTTGAGAGAGAA 57.276 36.000 5.95 0.00 45.39 2.87
3237 4823 7.398618 AGTTGGAGATTACAATCTTGAGAGAGA 59.601 37.037 5.95 0.00 45.39 3.10
3238 4824 7.492020 CAGTTGGAGATTACAATCTTGAGAGAG 59.508 40.741 5.95 0.00 45.39 3.20
3239 4825 7.038729 ACAGTTGGAGATTACAATCTTGAGAGA 60.039 37.037 5.95 0.00 45.39 3.10
3240 4826 7.102346 ACAGTTGGAGATTACAATCTTGAGAG 58.898 38.462 5.95 0.00 45.39 3.20
3241 4827 7.009179 ACAGTTGGAGATTACAATCTTGAGA 57.991 36.000 5.95 0.00 45.39 3.27
3242 4828 8.824781 CATACAGTTGGAGATTACAATCTTGAG 58.175 37.037 5.95 0.00 45.39 3.02
3243 4829 7.280876 GCATACAGTTGGAGATTACAATCTTGA 59.719 37.037 5.95 0.00 45.39 3.02
3244 4830 7.412853 GCATACAGTTGGAGATTACAATCTTG 58.587 38.462 5.95 3.17 45.39 3.02
3245 4831 6.258727 CGCATACAGTTGGAGATTACAATCTT 59.741 38.462 5.95 0.00 45.39 2.40
3247 4833 5.559035 GCGCATACAGTTGGAGATTACAATC 60.559 44.000 0.30 0.00 35.64 2.67
3248 4834 4.273480 GCGCATACAGTTGGAGATTACAAT 59.727 41.667 0.30 0.00 0.00 2.71
3249 4835 3.621268 GCGCATACAGTTGGAGATTACAA 59.379 43.478 0.30 0.00 0.00 2.41
3250 4836 3.118775 AGCGCATACAGTTGGAGATTACA 60.119 43.478 11.47 0.00 0.00 2.41
3251 4837 3.458189 AGCGCATACAGTTGGAGATTAC 58.542 45.455 11.47 0.00 0.00 1.89
3252 4838 3.819564 AGCGCATACAGTTGGAGATTA 57.180 42.857 11.47 0.00 0.00 1.75
3253 4839 2.698855 AGCGCATACAGTTGGAGATT 57.301 45.000 11.47 0.00 0.00 2.40
3254 4840 3.306364 GGATAGCGCATACAGTTGGAGAT 60.306 47.826 11.47 0.00 0.00 2.75
3255 4841 2.035961 GGATAGCGCATACAGTTGGAGA 59.964 50.000 11.47 0.00 0.00 3.71
3256 4842 2.408050 GGATAGCGCATACAGTTGGAG 58.592 52.381 11.47 0.00 0.00 3.86
3257 4843 1.070134 GGGATAGCGCATACAGTTGGA 59.930 52.381 11.47 0.00 0.00 3.53
3258 4844 1.202639 TGGGATAGCGCATACAGTTGG 60.203 52.381 11.47 0.00 31.33 3.77
3259 4845 2.138320 CTGGGATAGCGCATACAGTTG 58.862 52.381 11.47 0.00 36.30 3.16
3260 4846 1.070758 CCTGGGATAGCGCATACAGTT 59.929 52.381 11.47 0.00 36.30 3.16
3261 4847 0.681733 CCTGGGATAGCGCATACAGT 59.318 55.000 11.47 0.00 36.30 3.55
3262 4848 0.036952 CCCTGGGATAGCGCATACAG 60.037 60.000 11.47 10.27 36.30 2.74
3263 4849 0.471022 TCCCTGGGATAGCGCATACA 60.471 55.000 12.53 0.00 36.30 2.29
3264 4850 0.247736 CTCCCTGGGATAGCGCATAC 59.752 60.000 17.51 1.28 36.30 2.39
3265 4851 0.904865 CCTCCCTGGGATAGCGCATA 60.905 60.000 17.51 0.00 36.30 3.14
3266 4852 2.219875 CCTCCCTGGGATAGCGCAT 61.220 63.158 17.51 0.06 36.30 4.73
3267 4853 2.844362 CCTCCCTGGGATAGCGCA 60.844 66.667 17.51 0.00 35.49 6.09
3268 4854 2.844839 ACCTCCCTGGGATAGCGC 60.845 66.667 17.51 0.00 41.11 5.92
3269 4855 3.142393 CACCTCCCTGGGATAGCG 58.858 66.667 17.51 4.12 41.11 4.26
3270 4856 2.832498 GCACCTCCCTGGGATAGC 59.168 66.667 17.51 16.26 41.11 2.97
3271 4857 3.142393 CGCACCTCCCTGGGATAG 58.858 66.667 17.51 13.43 41.11 2.08
3272 4858 3.161450 GCGCACCTCCCTGGGATA 61.161 66.667 17.51 0.00 41.11 2.59
3282 4868 2.599139 TATAGACCAGGGGCGCACCT 62.599 60.000 29.92 29.92 43.08 4.00
3283 4869 1.692173 TTATAGACCAGGGGCGCACC 61.692 60.000 24.88 24.88 39.11 5.01
3284 4870 0.179468 TTTATAGACCAGGGGCGCAC 59.821 55.000 10.83 4.83 0.00 5.34
3285 4871 0.179468 GTTTATAGACCAGGGGCGCA 59.821 55.000 10.83 0.00 0.00 6.09
3286 4872 0.179468 TGTTTATAGACCAGGGGCGC 59.821 55.000 0.00 0.00 0.00 6.53
3287 4873 1.805120 CGTGTTTATAGACCAGGGGCG 60.805 57.143 0.00 0.00 0.00 6.13
3288 4874 1.208776 ACGTGTTTATAGACCAGGGGC 59.791 52.381 0.00 0.00 0.00 5.80
3289 4875 4.081531 TGTTACGTGTTTATAGACCAGGGG 60.082 45.833 0.00 0.00 0.00 4.79
3290 4876 5.075858 TGTTACGTGTTTATAGACCAGGG 57.924 43.478 0.00 0.00 0.00 4.45
3291 4877 4.565564 GCTGTTACGTGTTTATAGACCAGG 59.434 45.833 0.00 0.00 0.00 4.45
3292 4878 4.264614 CGCTGTTACGTGTTTATAGACCAG 59.735 45.833 0.00 0.00 0.00 4.00
3293 4879 4.168014 CGCTGTTACGTGTTTATAGACCA 58.832 43.478 0.00 0.00 0.00 4.02
3294 4880 3.000376 GCGCTGTTACGTGTTTATAGACC 60.000 47.826 0.00 0.00 34.88 3.85
3295 4881 3.000376 GGCGCTGTTACGTGTTTATAGAC 60.000 47.826 7.64 0.00 34.88 2.59
3296 4882 3.181397 GGCGCTGTTACGTGTTTATAGA 58.819 45.455 7.64 0.00 34.88 1.98
3297 4883 2.283351 GGGCGCTGTTACGTGTTTATAG 59.717 50.000 7.64 0.00 34.88 1.31
3298 4884 2.270047 GGGCGCTGTTACGTGTTTATA 58.730 47.619 7.64 0.00 34.88 0.98
3299 4885 1.081094 GGGCGCTGTTACGTGTTTAT 58.919 50.000 7.64 0.00 34.88 1.40
3300 4886 0.950071 GGGGCGCTGTTACGTGTTTA 60.950 55.000 7.64 0.00 34.88 2.01
3301 4887 2.255881 GGGGCGCTGTTACGTGTTT 61.256 57.895 7.64 0.00 34.88 2.83
3302 4888 2.667199 GGGGCGCTGTTACGTGTT 60.667 61.111 7.64 0.00 34.88 3.32
3303 4889 3.584868 GAGGGGCGCTGTTACGTGT 62.585 63.158 9.52 0.00 34.88 4.49
3304 4890 2.813908 GAGGGGCGCTGTTACGTG 60.814 66.667 9.52 0.00 34.88 4.49
3305 4891 2.656069 ATGAGGGGCGCTGTTACGT 61.656 57.895 9.52 0.00 34.88 3.57
3306 4892 2.173669 CATGAGGGGCGCTGTTACG 61.174 63.158 9.52 0.00 0.00 3.18
3307 4893 0.179045 ATCATGAGGGGCGCTGTTAC 60.179 55.000 9.52 0.00 0.00 2.50
3308 4894 0.179048 CATCATGAGGGGCGCTGTTA 60.179 55.000 9.52 0.00 0.00 2.41
3309 4895 1.452651 CATCATGAGGGGCGCTGTT 60.453 57.895 9.52 0.00 0.00 3.16
3310 4896 2.191375 CATCATGAGGGGCGCTGT 59.809 61.111 9.52 0.00 0.00 4.40
3311 4897 1.597302 CTCATCATGAGGGGCGCTG 60.597 63.158 9.52 0.00 40.71 5.18
3312 4898 2.827423 CTCATCATGAGGGGCGCT 59.173 61.111 7.64 2.69 40.71 5.92
3319 4905 6.542574 GAAAGCATCTTACCTCATCATGAG 57.457 41.667 7.79 7.79 43.91 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.