Multiple sequence alignment - TraesCS1B01G215900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G215900 chr1B 100.000 3017 0 0 1 3017 391584489 391581473 0.000000e+00 5572.0
1 TraesCS1B01G215900 chr1B 98.526 2239 33 0 685 2923 346965877 346968115 0.000000e+00 3952.0
2 TraesCS1B01G215900 chr1B 99.083 218 2 0 686 903 391577494 391577711 2.820000e-105 392.0
3 TraesCS1B01G215900 chr1B 98.190 221 4 0 686 906 346968720 346968500 1.310000e-103 387.0
4 TraesCS1B01G215900 chr3A 98.929 2334 24 1 684 3017 443994336 443992004 0.000000e+00 4170.0
5 TraesCS1B01G215900 chr3A 90.776 1431 109 6 686 2095 210224200 210225628 0.000000e+00 1890.0
6 TraesCS1B01G215900 chr3A 93.912 657 39 1 2361 3017 210241895 210242550 0.000000e+00 990.0
7 TraesCS1B01G215900 chr3A 82.716 81 10 3 2254 2333 210225771 210225848 5.400000e-08 69.4
8 TraesCS1B01G215900 chr4A 98.928 2332 18 3 686 3017 42260771 42258447 0.000000e+00 4161.0
9 TraesCS1B01G215900 chr4A 98.624 218 3 0 686 903 42254771 42254988 1.310000e-103 387.0
10 TraesCS1B01G215900 chr2B 99.424 2082 12 0 686 2767 423899817 423901898 0.000000e+00 3779.0
11 TraesCS1B01G215900 chr2B 91.791 1669 75 22 685 2302 655906067 655904410 0.000000e+00 2266.0
12 TraesCS1B01G215900 chr2B 96.651 657 21 1 2361 3017 655904284 655903629 0.000000e+00 1090.0
13 TraesCS1B01G215900 chr2B 98.020 101 2 0 2277 2377 655904408 655904308 3.090000e-40 176.0
14 TraesCS1B01G215900 chr6B 97.524 1696 38 2 686 2377 551808400 551806705 0.000000e+00 2896.0
15 TraesCS1B01G215900 chr6B 99.119 454 4 0 2361 2814 551806681 551806228 0.000000e+00 817.0
16 TraesCS1B01G215900 chr6B 98.624 218 3 0 686 903 551804685 551804902 1.310000e-103 387.0
17 TraesCS1B01G215900 chr5A 90.909 1122 80 8 685 1785 665966870 665965750 0.000000e+00 1487.0
18 TraesCS1B01G215900 chr5A 93.465 658 42 1 2361 3017 665954853 665954196 0.000000e+00 976.0
19 TraesCS1B01G215900 chr5A 93.309 269 18 0 1827 2095 665955405 665955137 6.060000e-107 398.0
20 TraesCS1B01G215900 chr5A 86.022 93 11 2 2254 2346 665954994 665954904 6.880000e-17 99.0
21 TraesCS1B01G215900 chr1D 82.192 1314 192 24 685 1970 378072526 378071227 0.000000e+00 1092.0
22 TraesCS1B01G215900 chr1D 96.458 367 11 1 1 367 290450098 290449734 3.330000e-169 604.0
23 TraesCS1B01G215900 chr1D 90.354 311 13 6 391 684 290449415 290449105 2.820000e-105 392.0
24 TraesCS1B01G215900 chr3D 94.845 582 28 2 2437 3017 26059357 26058777 0.000000e+00 907.0
25 TraesCS1B01G215900 chr1A 92.870 561 29 9 96 652 362868149 362867596 0.000000e+00 804.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G215900 chr1B 391581473 391584489 3016 True 5572.000000 5572 100.000000 1 3017 1 chr1B.!!$R2 3016
1 TraesCS1B01G215900 chr1B 346965877 346968115 2238 False 3952.000000 3952 98.526000 685 2923 1 chr1B.!!$F1 2238
2 TraesCS1B01G215900 chr3A 443992004 443994336 2332 True 4170.000000 4170 98.929000 684 3017 1 chr3A.!!$R1 2333
3 TraesCS1B01G215900 chr3A 210241895 210242550 655 False 990.000000 990 93.912000 2361 3017 1 chr3A.!!$F1 656
4 TraesCS1B01G215900 chr3A 210224200 210225848 1648 False 979.700000 1890 86.746000 686 2333 2 chr3A.!!$F2 1647
5 TraesCS1B01G215900 chr4A 42258447 42260771 2324 True 4161.000000 4161 98.928000 686 3017 1 chr4A.!!$R1 2331
6 TraesCS1B01G215900 chr2B 423899817 423901898 2081 False 3779.000000 3779 99.424000 686 2767 1 chr2B.!!$F1 2081
7 TraesCS1B01G215900 chr2B 655903629 655906067 2438 True 1177.333333 2266 95.487333 685 3017 3 chr2B.!!$R1 2332
8 TraesCS1B01G215900 chr6B 551806228 551808400 2172 True 1856.500000 2896 98.321500 686 2814 2 chr6B.!!$R1 2128
9 TraesCS1B01G215900 chr5A 665965750 665966870 1120 True 1487.000000 1487 90.909000 685 1785 1 chr5A.!!$R1 1100
10 TraesCS1B01G215900 chr5A 665954196 665955405 1209 True 491.000000 976 90.932000 1827 3017 3 chr5A.!!$R2 1190
11 TraesCS1B01G215900 chr1D 378071227 378072526 1299 True 1092.000000 1092 82.192000 685 1970 1 chr1D.!!$R1 1285
12 TraesCS1B01G215900 chr1D 290449105 290450098 993 True 498.000000 604 93.406000 1 684 2 chr1D.!!$R2 683
13 TraesCS1B01G215900 chr3D 26058777 26059357 580 True 907.000000 907 94.845000 2437 3017 1 chr3D.!!$R1 580
14 TraesCS1B01G215900 chr1A 362867596 362868149 553 True 804.000000 804 92.870000 96 652 1 chr1A.!!$R1 556

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
526 527 0.035056 AAAGATCCGGAACTGCAGGG 60.035 55.0 19.93 9.64 32.08 4.45 F
562 563 0.100682 GCTGGCGACGAGATCAAGTA 59.899 55.0 0.00 0.00 0.00 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1972 2011 5.236695 GTGGTTCAGACTCTTTTACACCTTC 59.763 44.00 0.0 0.0 0.0 3.46 R
2044 2083 5.924475 AGATACCAAGTTCACAAAAGACG 57.076 39.13 0.0 0.0 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 2.298729 AGTTCTTGTGCACTCTCCTCTC 59.701 50.000 19.41 1.51 0.00 3.20
34 35 1.203112 TCTTGTGCACTCTCCTCTCCT 60.203 52.381 19.41 0.00 0.00 3.69
91 92 2.174424 GGATCTGGCTTCCCAAGAATCT 59.826 50.000 0.00 0.00 41.58 2.40
99 100 0.691078 TCCCAAGAATCTCTCCCGGG 60.691 60.000 16.85 16.85 33.81 5.73
173 174 1.447643 GACCATGGGAGGGATCACG 59.552 63.158 18.09 0.00 0.00 4.35
196 197 1.480789 ACTTTTTGGCCGTCTTTGGT 58.519 45.000 0.00 0.00 0.00 3.67
249 250 1.805910 GCAGCAGCTTTTAGGCTCC 59.194 57.895 0.00 0.00 41.00 4.70
250 251 1.986575 GCAGCAGCTTTTAGGCTCCG 61.987 60.000 0.00 0.00 41.00 4.63
251 252 0.674895 CAGCAGCTTTTAGGCTCCGT 60.675 55.000 0.00 0.00 41.00 4.69
252 253 0.036875 AGCAGCTTTTAGGCTCCGTT 59.963 50.000 0.00 0.00 41.00 4.44
253 254 0.448197 GCAGCTTTTAGGCTCCGTTC 59.552 55.000 0.00 0.00 41.00 3.95
254 255 1.087501 CAGCTTTTAGGCTCCGTTCC 58.912 55.000 0.00 0.00 41.00 3.62
255 256 0.391263 AGCTTTTAGGCTCCGTTCCG 60.391 55.000 0.00 0.00 38.24 4.30
256 257 1.978712 GCTTTTAGGCTCCGTTCCGC 61.979 60.000 0.00 0.00 0.00 5.54
257 258 0.672401 CTTTTAGGCTCCGTTCCGCA 60.672 55.000 0.00 0.00 0.00 5.69
258 259 0.952010 TTTTAGGCTCCGTTCCGCAC 60.952 55.000 0.00 0.00 0.00 5.34
259 260 1.823169 TTTAGGCTCCGTTCCGCACT 61.823 55.000 0.00 0.00 0.00 4.40
260 261 2.501223 TTAGGCTCCGTTCCGCACTG 62.501 60.000 0.00 0.00 0.00 3.66
261 262 4.373116 GGCTCCGTTCCGCACTGA 62.373 66.667 0.00 0.00 0.00 3.41
262 263 3.112709 GCTCCGTTCCGCACTGAC 61.113 66.667 0.00 0.00 0.00 3.51
263 264 2.338620 CTCCGTTCCGCACTGACA 59.661 61.111 0.00 0.00 0.00 3.58
264 265 1.734477 CTCCGTTCCGCACTGACAG 60.734 63.158 0.00 0.00 0.00 3.51
265 266 3.414700 CCGTTCCGCACTGACAGC 61.415 66.667 1.25 0.00 0.00 4.40
266 267 3.414700 CGTTCCGCACTGACAGCC 61.415 66.667 1.25 0.00 0.00 4.85
267 268 3.414700 GTTCCGCACTGACAGCCG 61.415 66.667 1.25 5.77 0.00 5.52
268 269 4.680237 TTCCGCACTGACAGCCGG 62.680 66.667 22.48 22.48 0.00 6.13
282 283 2.273449 CCGGCTGGCAGGATTTCT 59.727 61.111 17.64 0.00 32.98 2.52
283 284 1.526887 CCGGCTGGCAGGATTTCTA 59.473 57.895 17.64 0.00 32.98 2.10
284 285 0.815615 CCGGCTGGCAGGATTTCTAC 60.816 60.000 17.64 0.00 32.98 2.59
285 286 0.815615 CGGCTGGCAGGATTTCTACC 60.816 60.000 17.64 5.04 0.00 3.18
286 287 0.466372 GGCTGGCAGGATTTCTACCC 60.466 60.000 17.64 1.16 0.00 3.69
287 288 0.466372 GCTGGCAGGATTTCTACCCC 60.466 60.000 17.64 0.00 0.00 4.95
288 289 0.918983 CTGGCAGGATTTCTACCCCA 59.081 55.000 6.61 0.00 0.00 4.96
289 290 0.623723 TGGCAGGATTTCTACCCCAC 59.376 55.000 0.00 0.00 0.00 4.61
290 291 0.919710 GGCAGGATTTCTACCCCACT 59.080 55.000 0.00 0.00 0.00 4.00
291 292 2.124411 GGCAGGATTTCTACCCCACTA 58.876 52.381 0.00 0.00 0.00 2.74
292 293 2.711547 GGCAGGATTTCTACCCCACTAT 59.288 50.000 0.00 0.00 0.00 2.12
293 294 3.244596 GGCAGGATTTCTACCCCACTATC 60.245 52.174 0.00 0.00 0.00 2.08
294 295 3.648545 GCAGGATTTCTACCCCACTATCT 59.351 47.826 0.00 0.00 0.00 1.98
295 296 4.503991 GCAGGATTTCTACCCCACTATCTG 60.504 50.000 0.00 0.00 0.00 2.90
296 297 4.656112 CAGGATTTCTACCCCACTATCTGT 59.344 45.833 0.00 0.00 0.00 3.41
297 298 4.902448 AGGATTTCTACCCCACTATCTGTC 59.098 45.833 0.00 0.00 0.00 3.51
298 299 4.262079 GGATTTCTACCCCACTATCTGTCG 60.262 50.000 0.00 0.00 0.00 4.35
299 300 3.377253 TTCTACCCCACTATCTGTCGT 57.623 47.619 0.00 0.00 0.00 4.34
300 301 4.508551 TTCTACCCCACTATCTGTCGTA 57.491 45.455 0.00 0.00 0.00 3.43
301 302 3.813443 TCTACCCCACTATCTGTCGTAC 58.187 50.000 0.00 0.00 0.00 3.67
302 303 2.822707 ACCCCACTATCTGTCGTACT 57.177 50.000 0.00 0.00 0.00 2.73
303 304 2.652590 ACCCCACTATCTGTCGTACTC 58.347 52.381 0.00 0.00 0.00 2.59
304 305 1.955080 CCCCACTATCTGTCGTACTCC 59.045 57.143 0.00 0.00 0.00 3.85
305 306 1.955080 CCCACTATCTGTCGTACTCCC 59.045 57.143 0.00 0.00 0.00 4.30
306 307 1.602851 CCACTATCTGTCGTACTCCCG 59.397 57.143 0.00 0.00 0.00 5.14
307 308 2.558378 CACTATCTGTCGTACTCCCGA 58.442 52.381 0.00 0.00 33.79 5.14
308 309 3.139850 CACTATCTGTCGTACTCCCGAT 58.860 50.000 0.00 0.00 39.34 4.18
309 310 3.186817 CACTATCTGTCGTACTCCCGATC 59.813 52.174 0.00 0.00 39.34 3.69
310 311 2.642154 ATCTGTCGTACTCCCGATCT 57.358 50.000 0.00 0.00 39.34 2.75
311 312 1.950828 TCTGTCGTACTCCCGATCTC 58.049 55.000 0.00 0.00 39.34 2.75
312 313 0.945813 CTGTCGTACTCCCGATCTCC 59.054 60.000 0.00 0.00 39.34 3.71
313 314 0.812811 TGTCGTACTCCCGATCTCCG 60.813 60.000 0.00 0.00 39.34 4.63
314 315 1.890979 TCGTACTCCCGATCTCCGC 60.891 63.158 0.00 0.00 36.84 5.54
315 316 2.905807 CGTACTCCCGATCTCCGCC 61.906 68.421 0.00 0.00 36.84 6.13
316 317 1.528776 GTACTCCCGATCTCCGCCT 60.529 63.158 0.00 0.00 36.84 5.52
317 318 1.528542 TACTCCCGATCTCCGCCTG 60.529 63.158 0.00 0.00 36.84 4.85
318 319 4.292178 CTCCCGATCTCCGCCTGC 62.292 72.222 0.00 0.00 36.84 4.85
320 321 3.933722 CCCGATCTCCGCCTGCAT 61.934 66.667 0.00 0.00 36.84 3.96
321 322 2.109799 CCGATCTCCGCCTGCATT 59.890 61.111 0.00 0.00 36.84 3.56
322 323 2.249535 CCGATCTCCGCCTGCATTG 61.250 63.158 0.00 0.00 36.84 2.82
323 324 2.249535 CGATCTCCGCCTGCATTGG 61.250 63.158 0.00 0.00 0.00 3.16
324 325 1.146930 GATCTCCGCCTGCATTGGA 59.853 57.895 0.00 0.00 0.00 3.53
327 328 2.268920 TCCGCCTGCATTGGAGAC 59.731 61.111 6.77 0.00 0.00 3.36
328 329 2.046023 CCGCCTGCATTGGAGACA 60.046 61.111 6.77 0.00 39.83 3.41
329 330 2.110967 CCGCCTGCATTGGAGACAG 61.111 63.158 6.77 0.00 44.54 3.51
330 331 1.376424 CGCCTGCATTGGAGACAGT 60.376 57.895 6.77 0.00 44.54 3.55
341 342 3.896317 GAGACAGTGGTCACCTGAC 57.104 57.895 0.00 0.00 46.80 3.51
352 353 2.851195 GTCACCTGACCAAATCACACT 58.149 47.619 0.00 0.00 39.07 3.55
353 354 3.214328 GTCACCTGACCAAATCACACTT 58.786 45.455 0.00 0.00 39.07 3.16
354 355 3.632145 GTCACCTGACCAAATCACACTTT 59.368 43.478 0.00 0.00 39.07 2.66
355 356 3.882888 TCACCTGACCAAATCACACTTTC 59.117 43.478 0.00 0.00 32.37 2.62
356 357 3.885297 CACCTGACCAAATCACACTTTCT 59.115 43.478 0.00 0.00 32.37 2.52
357 358 3.885297 ACCTGACCAAATCACACTTTCTG 59.115 43.478 0.00 0.00 32.37 3.02
358 359 3.885297 CCTGACCAAATCACACTTTCTGT 59.115 43.478 0.00 0.00 32.37 3.41
376 377 9.571816 ACTTTCTGTGAACTACTACTACTACTT 57.428 33.333 0.00 0.00 0.00 2.24
377 378 9.828852 CTTTCTGTGAACTACTACTACTACTTG 57.171 37.037 0.00 0.00 0.00 3.16
378 379 7.375106 TCTGTGAACTACTACTACTACTTGC 57.625 40.000 0.00 0.00 0.00 4.01
379 380 6.091849 TCTGTGAACTACTACTACTACTTGCG 59.908 42.308 0.00 0.00 0.00 4.85
380 381 5.702670 TGTGAACTACTACTACTACTTGCGT 59.297 40.000 0.00 0.00 0.00 5.24
381 382 6.205464 TGTGAACTACTACTACTACTTGCGTT 59.795 38.462 0.00 0.00 0.00 4.84
382 383 7.080724 GTGAACTACTACTACTACTTGCGTTT 58.919 38.462 0.00 0.00 0.00 3.60
383 384 7.270151 GTGAACTACTACTACTACTTGCGTTTC 59.730 40.741 0.00 0.00 0.00 2.78
384 385 7.173907 TGAACTACTACTACTACTTGCGTTTCT 59.826 37.037 0.00 0.00 0.00 2.52
385 386 7.446001 ACTACTACTACTACTTGCGTTTCTT 57.554 36.000 0.00 0.00 0.00 2.52
386 387 7.880105 ACTACTACTACTACTTGCGTTTCTTT 58.120 34.615 0.00 0.00 0.00 2.52
387 388 8.355913 ACTACTACTACTACTTGCGTTTCTTTT 58.644 33.333 0.00 0.00 0.00 2.27
388 389 7.634809 ACTACTACTACTTGCGTTTCTTTTC 57.365 36.000 0.00 0.00 0.00 2.29
389 390 7.432059 ACTACTACTACTTGCGTTTCTTTTCT 58.568 34.615 0.00 0.00 0.00 2.52
390 391 6.766452 ACTACTACTTGCGTTTCTTTTCTC 57.234 37.500 0.00 0.00 0.00 2.87
391 392 6.514063 ACTACTACTTGCGTTTCTTTTCTCT 58.486 36.000 0.00 0.00 0.00 3.10
392 393 6.985059 ACTACTACTTGCGTTTCTTTTCTCTT 59.015 34.615 0.00 0.00 0.00 2.85
393 394 8.139989 ACTACTACTTGCGTTTCTTTTCTCTTA 58.860 33.333 0.00 0.00 0.00 2.10
394 395 7.781548 ACTACTTGCGTTTCTTTTCTCTTAA 57.218 32.000 0.00 0.00 0.00 1.85
395 396 8.205131 ACTACTTGCGTTTCTTTTCTCTTAAA 57.795 30.769 0.00 0.00 0.00 1.52
396 397 8.336080 ACTACTTGCGTTTCTTTTCTCTTAAAG 58.664 33.333 0.00 0.00 36.64 1.85
397 398 5.971792 ACTTGCGTTTCTTTTCTCTTAAAGC 59.028 36.000 0.00 0.00 35.56 3.51
398 399 5.493133 TGCGTTTCTTTTCTCTTAAAGCA 57.507 34.783 0.00 0.00 35.56 3.91
399 400 5.270853 TGCGTTTCTTTTCTCTTAAAGCAC 58.729 37.500 0.00 0.00 35.56 4.40
400 401 5.163703 TGCGTTTCTTTTCTCTTAAAGCACA 60.164 36.000 0.00 0.00 35.56 4.57
401 402 5.396654 GCGTTTCTTTTCTCTTAAAGCACAG 59.603 40.000 0.00 0.00 35.56 3.66
402 403 6.487103 CGTTTCTTTTCTCTTAAAGCACAGT 58.513 36.000 0.00 0.00 35.56 3.55
403 404 7.627340 CGTTTCTTTTCTCTTAAAGCACAGTA 58.373 34.615 0.00 0.00 35.56 2.74
404 405 8.283291 CGTTTCTTTTCTCTTAAAGCACAGTAT 58.717 33.333 0.00 0.00 35.56 2.12
405 406 9.952188 GTTTCTTTTCTCTTAAAGCACAGTATT 57.048 29.630 0.00 0.00 35.56 1.89
419 420 9.820725 AAAGCACAGTATTATTATACCGTACAA 57.179 29.630 0.00 0.00 37.87 2.41
420 421 9.991906 AAGCACAGTATTATTATACCGTACAAT 57.008 29.630 0.00 0.00 37.87 2.71
421 422 9.635520 AGCACAGTATTATTATACCGTACAATC 57.364 33.333 0.00 0.00 37.87 2.67
422 423 9.635520 GCACAGTATTATTATACCGTACAATCT 57.364 33.333 0.00 0.00 37.87 2.40
429 430 9.653287 ATTATTATACCGTACAATCTCACATGG 57.347 33.333 0.00 0.00 0.00 3.66
430 431 2.024176 ACCGTACAATCTCACATGGC 57.976 50.000 0.00 0.00 0.00 4.40
431 432 1.555075 ACCGTACAATCTCACATGGCT 59.445 47.619 0.00 0.00 0.00 4.75
432 433 2.027192 ACCGTACAATCTCACATGGCTT 60.027 45.455 0.00 0.00 0.00 4.35
433 434 3.009723 CCGTACAATCTCACATGGCTTT 58.990 45.455 0.00 0.00 0.00 3.51
434 435 3.181507 CCGTACAATCTCACATGGCTTTG 60.182 47.826 0.00 0.00 0.00 2.77
435 436 3.728864 CGTACAATCTCACATGGCTTTGC 60.729 47.826 0.00 0.00 0.00 3.68
447 448 2.426842 GGCTTTGCCCTATTCTGTCT 57.573 50.000 0.00 0.00 44.06 3.41
448 449 2.728007 GGCTTTGCCCTATTCTGTCTT 58.272 47.619 0.00 0.00 44.06 3.01
449 450 2.685388 GGCTTTGCCCTATTCTGTCTTC 59.315 50.000 0.00 0.00 44.06 2.87
450 451 3.615155 GCTTTGCCCTATTCTGTCTTCT 58.385 45.455 0.00 0.00 0.00 2.85
451 452 3.376546 GCTTTGCCCTATTCTGTCTTCTG 59.623 47.826 0.00 0.00 0.00 3.02
452 453 2.698855 TGCCCTATTCTGTCTTCTGC 57.301 50.000 0.00 0.00 0.00 4.26
453 454 1.134699 TGCCCTATTCTGTCTTCTGCG 60.135 52.381 0.00 0.00 0.00 5.18
454 455 1.134670 GCCCTATTCTGTCTTCTGCGT 60.135 52.381 0.00 0.00 0.00 5.24
455 456 2.678190 GCCCTATTCTGTCTTCTGCGTT 60.678 50.000 0.00 0.00 0.00 4.84
456 457 3.190874 CCCTATTCTGTCTTCTGCGTTC 58.809 50.000 0.00 0.00 0.00 3.95
457 458 3.368427 CCCTATTCTGTCTTCTGCGTTCA 60.368 47.826 0.00 0.00 0.00 3.18
458 459 4.437239 CCTATTCTGTCTTCTGCGTTCAT 58.563 43.478 0.00 0.00 0.00 2.57
459 460 4.505922 CCTATTCTGTCTTCTGCGTTCATC 59.494 45.833 0.00 0.00 0.00 2.92
460 461 2.370281 TCTGTCTTCTGCGTTCATCC 57.630 50.000 0.00 0.00 0.00 3.51
461 462 1.895798 TCTGTCTTCTGCGTTCATCCT 59.104 47.619 0.00 0.00 0.00 3.24
462 463 2.300152 TCTGTCTTCTGCGTTCATCCTT 59.700 45.455 0.00 0.00 0.00 3.36
463 464 3.070018 CTGTCTTCTGCGTTCATCCTTT 58.930 45.455 0.00 0.00 0.00 3.11
464 465 3.476552 TGTCTTCTGCGTTCATCCTTTT 58.523 40.909 0.00 0.00 0.00 2.27
465 466 3.250762 TGTCTTCTGCGTTCATCCTTTTG 59.749 43.478 0.00 0.00 0.00 2.44
466 467 3.498397 GTCTTCTGCGTTCATCCTTTTGA 59.502 43.478 0.00 0.00 0.00 2.69
467 468 3.748048 TCTTCTGCGTTCATCCTTTTGAG 59.252 43.478 0.00 0.00 0.00 3.02
468 469 2.426522 TCTGCGTTCATCCTTTTGAGG 58.573 47.619 0.00 0.00 0.00 3.86
469 470 2.154462 CTGCGTTCATCCTTTTGAGGT 58.846 47.619 0.00 0.00 0.00 3.85
470 471 1.879380 TGCGTTCATCCTTTTGAGGTG 59.121 47.619 0.00 0.00 0.00 4.00
471 472 2.151202 GCGTTCATCCTTTTGAGGTGA 58.849 47.619 0.00 0.00 0.00 4.02
472 473 2.095718 GCGTTCATCCTTTTGAGGTGAC 60.096 50.000 0.00 0.00 0.00 3.67
473 474 3.138304 CGTTCATCCTTTTGAGGTGACA 58.862 45.455 0.00 0.00 0.00 3.58
474 475 3.563808 CGTTCATCCTTTTGAGGTGACAA 59.436 43.478 0.00 0.00 0.00 3.18
475 476 4.554723 CGTTCATCCTTTTGAGGTGACAAC 60.555 45.833 0.00 0.00 0.00 3.32
476 477 4.437682 TCATCCTTTTGAGGTGACAACT 57.562 40.909 0.00 0.00 0.00 3.16
477 478 4.136796 TCATCCTTTTGAGGTGACAACTG 58.863 43.478 0.00 0.00 0.00 3.16
478 479 2.930950 TCCTTTTGAGGTGACAACTGG 58.069 47.619 0.00 0.00 0.00 4.00
479 480 1.338020 CCTTTTGAGGTGACAACTGGC 59.662 52.381 0.00 0.00 0.00 4.85
480 481 1.338020 CTTTTGAGGTGACAACTGGCC 59.662 52.381 0.00 0.00 0.00 5.36
481 482 0.257328 TTTGAGGTGACAACTGGCCA 59.743 50.000 4.71 4.71 0.00 5.36
482 483 0.257328 TTGAGGTGACAACTGGCCAA 59.743 50.000 7.01 0.00 0.00 4.52
483 484 0.465460 TGAGGTGACAACTGGCCAAC 60.465 55.000 7.01 0.00 0.00 3.77
484 485 1.152756 AGGTGACAACTGGCCAACC 60.153 57.895 13.29 13.29 0.00 3.77
485 486 1.454847 GGTGACAACTGGCCAACCA 60.455 57.895 15.78 3.07 46.51 3.67
502 503 6.515272 CCAACCATGGCCTAATATATTGTC 57.485 41.667 13.04 0.00 40.58 3.18
503 504 6.248433 CCAACCATGGCCTAATATATTGTCT 58.752 40.000 13.04 0.00 40.58 3.41
504 505 6.721208 CCAACCATGGCCTAATATATTGTCTT 59.279 38.462 13.04 0.00 40.58 3.01
505 506 7.094205 CCAACCATGGCCTAATATATTGTCTTC 60.094 40.741 13.04 0.00 40.58 2.87
506 507 6.485171 ACCATGGCCTAATATATTGTCTTCC 58.515 40.000 13.04 3.38 0.00 3.46
507 508 6.045459 ACCATGGCCTAATATATTGTCTTCCA 59.955 38.462 13.04 8.28 0.00 3.53
508 509 6.947733 CCATGGCCTAATATATTGTCTTCCAA 59.052 38.462 3.32 0.00 37.49 3.53
509 510 7.451255 CCATGGCCTAATATATTGTCTTCCAAA 59.549 37.037 3.32 0.00 36.44 3.28
510 511 8.517878 CATGGCCTAATATATTGTCTTCCAAAG 58.482 37.037 3.32 0.00 36.44 2.77
511 512 7.811282 TGGCCTAATATATTGTCTTCCAAAGA 58.189 34.615 3.32 0.00 36.44 2.52
512 513 8.448008 TGGCCTAATATATTGTCTTCCAAAGAT 58.552 33.333 3.32 0.00 40.18 2.40
513 514 8.951243 GGCCTAATATATTGTCTTCCAAAGATC 58.049 37.037 8.28 0.00 40.18 2.75
514 515 8.951243 GCCTAATATATTGTCTTCCAAAGATCC 58.049 37.037 8.28 0.00 40.18 3.36
515 516 9.155975 CCTAATATATTGTCTTCCAAAGATCCG 57.844 37.037 8.28 0.00 40.18 4.18
516 517 7.986085 AATATATTGTCTTCCAAAGATCCGG 57.014 36.000 0.00 0.00 40.18 5.14
517 518 5.630415 ATATTGTCTTCCAAAGATCCGGA 57.370 39.130 6.61 6.61 40.18 5.14
518 519 3.780804 TTGTCTTCCAAAGATCCGGAA 57.219 42.857 9.01 8.21 40.18 4.30
519 520 3.053831 TGTCTTCCAAAGATCCGGAAC 57.946 47.619 9.01 5.70 40.18 3.62
520 521 2.637872 TGTCTTCCAAAGATCCGGAACT 59.362 45.455 9.01 8.84 40.18 3.01
521 522 3.003480 GTCTTCCAAAGATCCGGAACTG 58.997 50.000 15.81 4.47 40.18 3.16
522 523 1.740025 CTTCCAAAGATCCGGAACTGC 59.260 52.381 15.81 1.84 36.36 4.40
523 524 0.690192 TCCAAAGATCCGGAACTGCA 59.310 50.000 15.81 0.00 0.00 4.41
524 525 1.089920 CCAAAGATCCGGAACTGCAG 58.910 55.000 15.81 13.48 0.00 4.41
525 526 1.089920 CAAAGATCCGGAACTGCAGG 58.910 55.000 19.93 0.00 0.00 4.85
526 527 0.035056 AAAGATCCGGAACTGCAGGG 60.035 55.000 19.93 9.64 32.08 4.45
527 528 2.514824 GATCCGGAACTGCAGGGC 60.515 66.667 19.93 9.15 32.08 5.19
528 529 4.115199 ATCCGGAACTGCAGGGCC 62.115 66.667 19.93 17.12 32.08 5.80
530 531 3.399181 CCGGAACTGCAGGGCCTA 61.399 66.667 19.93 0.00 0.00 3.93
531 532 2.668632 CGGAACTGCAGGGCCTAA 59.331 61.111 19.93 0.00 0.00 2.69
532 533 1.002624 CGGAACTGCAGGGCCTAAA 60.003 57.895 19.93 0.00 0.00 1.85
533 534 0.394352 CGGAACTGCAGGGCCTAAAT 60.394 55.000 19.93 0.00 0.00 1.40
534 535 1.106285 GGAACTGCAGGGCCTAAATG 58.894 55.000 19.93 0.00 0.00 2.32
535 536 1.106285 GAACTGCAGGGCCTAAATGG 58.894 55.000 19.93 0.00 39.35 3.16
536 537 0.409484 AACTGCAGGGCCTAAATGGT 59.591 50.000 19.93 0.00 38.35 3.55
537 538 0.409484 ACTGCAGGGCCTAAATGGTT 59.591 50.000 19.93 0.00 38.35 3.67
538 539 1.203174 ACTGCAGGGCCTAAATGGTTT 60.203 47.619 19.93 0.00 38.35 3.27
539 540 1.901833 CTGCAGGGCCTAAATGGTTTT 59.098 47.619 5.28 0.00 38.35 2.43
540 541 1.622811 TGCAGGGCCTAAATGGTTTTG 59.377 47.619 5.28 0.00 38.35 2.44
541 542 1.675714 GCAGGGCCTAAATGGTTTTGC 60.676 52.381 5.28 0.00 38.35 3.68
542 543 1.622811 CAGGGCCTAAATGGTTTTGCA 59.377 47.619 5.28 0.00 38.35 4.08
543 544 1.901833 AGGGCCTAAATGGTTTTGCAG 59.098 47.619 2.82 0.00 38.35 4.41
544 545 1.675714 GGGCCTAAATGGTTTTGCAGC 60.676 52.381 0.84 0.00 38.35 5.25
545 546 1.276138 GGCCTAAATGGTTTTGCAGCT 59.724 47.619 0.00 0.00 38.35 4.24
546 547 2.340337 GCCTAAATGGTTTTGCAGCTG 58.660 47.619 10.11 10.11 38.35 4.24
547 548 2.932187 GCCTAAATGGTTTTGCAGCTGG 60.932 50.000 17.12 0.00 38.35 4.85
548 549 2.340337 CTAAATGGTTTTGCAGCTGGC 58.660 47.619 17.12 8.54 45.13 4.85
557 558 2.959071 GCAGCTGGCGACGAGATC 60.959 66.667 17.12 0.00 0.00 2.75
558 559 2.491621 CAGCTGGCGACGAGATCA 59.508 61.111 5.57 0.00 0.00 2.92
559 560 1.153765 CAGCTGGCGACGAGATCAA 60.154 57.895 5.57 0.00 0.00 2.57
560 561 1.140589 AGCTGGCGACGAGATCAAG 59.859 57.895 0.00 0.00 0.00 3.02
561 562 1.153745 GCTGGCGACGAGATCAAGT 60.154 57.895 0.00 0.00 0.00 3.16
562 563 0.100682 GCTGGCGACGAGATCAAGTA 59.899 55.000 0.00 0.00 0.00 2.24
563 564 1.862008 GCTGGCGACGAGATCAAGTAG 60.862 57.143 0.00 0.00 0.00 2.57
564 565 1.402259 CTGGCGACGAGATCAAGTAGT 59.598 52.381 0.00 0.00 0.00 2.73
565 566 1.816835 TGGCGACGAGATCAAGTAGTT 59.183 47.619 0.00 0.00 0.00 2.24
566 567 2.159421 TGGCGACGAGATCAAGTAGTTC 60.159 50.000 0.00 0.00 0.00 3.01
567 568 2.097791 GGCGACGAGATCAAGTAGTTCT 59.902 50.000 0.00 0.00 0.00 3.01
568 569 3.427773 GGCGACGAGATCAAGTAGTTCTT 60.428 47.826 0.00 0.00 36.75 2.52
569 570 4.167268 GCGACGAGATCAAGTAGTTCTTT 58.833 43.478 0.00 0.00 33.63 2.52
570 571 4.621886 GCGACGAGATCAAGTAGTTCTTTT 59.378 41.667 0.00 0.00 33.63 2.27
571 572 5.798934 GCGACGAGATCAAGTAGTTCTTTTA 59.201 40.000 0.00 0.00 33.63 1.52
572 573 6.021311 GCGACGAGATCAAGTAGTTCTTTTAG 60.021 42.308 0.00 0.00 33.63 1.85
573 574 6.469595 CGACGAGATCAAGTAGTTCTTTTAGG 59.530 42.308 0.00 0.00 33.63 2.69
574 575 7.463961 ACGAGATCAAGTAGTTCTTTTAGGA 57.536 36.000 0.00 0.00 33.63 2.94
575 576 7.540299 ACGAGATCAAGTAGTTCTTTTAGGAG 58.460 38.462 0.00 0.00 33.63 3.69
576 577 6.975772 CGAGATCAAGTAGTTCTTTTAGGAGG 59.024 42.308 0.00 0.00 33.63 4.30
577 578 7.189079 AGATCAAGTAGTTCTTTTAGGAGGG 57.811 40.000 0.00 0.00 33.63 4.30
578 579 5.757099 TCAAGTAGTTCTTTTAGGAGGGG 57.243 43.478 0.00 0.00 33.63 4.79
579 580 5.408824 TCAAGTAGTTCTTTTAGGAGGGGA 58.591 41.667 0.00 0.00 33.63 4.81
580 581 5.847817 TCAAGTAGTTCTTTTAGGAGGGGAA 59.152 40.000 0.00 0.00 33.63 3.97
581 582 6.013639 TCAAGTAGTTCTTTTAGGAGGGGAAG 60.014 42.308 0.00 0.00 33.63 3.46
582 583 5.662597 AGTAGTTCTTTTAGGAGGGGAAGA 58.337 41.667 0.00 0.00 0.00 2.87
583 584 6.089502 AGTAGTTCTTTTAGGAGGGGAAGAA 58.910 40.000 0.00 0.00 36.19 2.52
584 585 5.924769 AGTTCTTTTAGGAGGGGAAGAAA 57.075 39.130 0.00 0.00 39.15 2.52
585 586 5.882040 AGTTCTTTTAGGAGGGGAAGAAAG 58.118 41.667 0.00 0.00 39.15 2.62
586 587 4.302559 TCTTTTAGGAGGGGAAGAAAGC 57.697 45.455 0.00 0.00 0.00 3.51
587 588 3.010250 TCTTTTAGGAGGGGAAGAAAGCC 59.990 47.826 0.00 0.00 0.00 4.35
588 589 0.909623 TTAGGAGGGGAAGAAAGCCG 59.090 55.000 0.00 0.00 0.00 5.52
589 590 0.981277 TAGGAGGGGAAGAAAGCCGG 60.981 60.000 0.00 0.00 0.00 6.13
590 591 2.272471 GAGGGGAAGAAAGCCGGG 59.728 66.667 2.18 0.00 0.00 5.73
591 592 2.531942 AGGGGAAGAAAGCCGGGT 60.532 61.111 0.00 0.00 0.00 5.28
592 593 2.138453 GAGGGGAAGAAAGCCGGGTT 62.138 60.000 14.44 14.44 0.00 4.11
593 594 1.677966 GGGGAAGAAAGCCGGGTTC 60.678 63.158 21.02 13.04 0.00 3.62
594 595 2.038837 GGGAAGAAAGCCGGGTTCG 61.039 63.158 21.02 0.00 0.00 3.95
595 596 1.302271 GGAAGAAAGCCGGGTTCGT 60.302 57.895 21.02 11.28 33.95 3.85
596 597 0.887836 GGAAGAAAGCCGGGTTCGTT 60.888 55.000 21.02 15.68 33.95 3.85
597 598 0.237498 GAAGAAAGCCGGGTTCGTTG 59.763 55.000 21.02 0.00 33.95 4.10
598 599 1.792118 AAGAAAGCCGGGTTCGTTGC 61.792 55.000 21.02 7.15 33.95 4.17
599 600 2.517402 AAAGCCGGGTTCGTTGCA 60.517 55.556 21.02 0.00 33.95 4.08
600 601 2.458006 GAAAGCCGGGTTCGTTGCAG 62.458 60.000 21.02 0.00 33.95 4.41
603 604 2.742372 CCGGGTTCGTTGCAGGAG 60.742 66.667 0.00 0.00 33.95 3.69
604 605 2.742372 CGGGTTCGTTGCAGGAGG 60.742 66.667 0.00 0.00 0.00 4.30
605 606 3.056328 GGGTTCGTTGCAGGAGGC 61.056 66.667 0.00 0.00 45.13 4.70
623 624 3.866582 GCGTGCCCTAGGAGCCAT 61.867 66.667 11.48 0.00 0.00 4.40
624 625 2.423446 CGTGCCCTAGGAGCCATC 59.577 66.667 11.48 5.01 0.00 3.51
625 626 2.136878 CGTGCCCTAGGAGCCATCT 61.137 63.158 11.48 0.00 0.00 2.90
626 627 1.751563 GTGCCCTAGGAGCCATCTC 59.248 63.158 11.48 0.00 38.62 2.75
637 638 3.822192 CCATCTCCGGCGTCGACA 61.822 66.667 12.93 0.00 39.00 4.35
638 639 2.180769 CATCTCCGGCGTCGACAA 59.819 61.111 12.93 0.00 39.00 3.18
639 640 2.158959 CATCTCCGGCGTCGACAAC 61.159 63.158 12.93 6.70 39.00 3.32
648 649 1.910880 CGTCGACAACGCTAGATGC 59.089 57.895 17.16 0.00 45.76 3.91
657 658 4.671569 GCTAGATGCGGCCCTCGG 62.672 72.222 0.00 0.00 39.69 4.63
658 659 2.912542 CTAGATGCGGCCCTCGGA 60.913 66.667 0.00 0.00 44.80 4.55
662 663 3.933722 ATGCGGCCCTCGGATCTG 61.934 66.667 0.00 0.00 46.97 2.90
667 668 3.620785 GCCCTCGGATCTGCGGAT 61.621 66.667 12.37 8.05 34.45 4.18
668 669 2.653702 CCCTCGGATCTGCGGATC 59.346 66.667 24.89 24.89 45.51 3.36
669 670 2.256764 CCTCGGATCTGCGGATCG 59.743 66.667 25.60 20.60 46.77 3.69
670 671 2.256764 CTCGGATCTGCGGATCGG 59.743 66.667 28.46 28.46 46.77 4.18
672 673 2.728180 CGGATCTGCGGATCGGAA 59.272 61.111 29.82 0.00 46.77 4.30
673 674 1.372251 CGGATCTGCGGATCGGAAG 60.372 63.158 29.82 17.21 46.77 3.46
674 675 1.666234 GGATCTGCGGATCGGAAGC 60.666 63.158 25.60 10.57 46.77 3.86
675 676 1.666234 GATCTGCGGATCGGAAGCC 60.666 63.158 19.49 0.00 38.91 4.35
676 677 2.369257 GATCTGCGGATCGGAAGCCA 62.369 60.000 19.49 0.00 38.91 4.75
677 678 2.374830 ATCTGCGGATCGGAAGCCAG 62.375 60.000 0.90 2.24 32.98 4.85
678 679 4.161295 TGCGGATCGGAAGCCAGG 62.161 66.667 4.16 0.00 0.00 4.45
679 680 4.918201 GCGGATCGGAAGCCAGGG 62.918 72.222 4.16 0.00 0.00 4.45
680 681 3.470888 CGGATCGGAAGCCAGGGT 61.471 66.667 0.00 0.00 0.00 4.34
681 682 2.190578 GGATCGGAAGCCAGGGTG 59.809 66.667 0.00 0.00 0.00 4.61
682 683 2.190578 GATCGGAAGCCAGGGTGG 59.809 66.667 0.00 0.00 41.55 4.61
814 815 0.955919 GGTCCCTGAGCTTGAAACGG 60.956 60.000 0.00 0.00 0.00 4.44
1972 2011 3.183172 CGATGGCAGTATCTGTGATTTCG 59.817 47.826 0.00 0.00 33.43 3.46
2044 2083 8.263940 TGTGAACCACTATCTATTTTAAGTGC 57.736 34.615 0.00 0.00 38.39 4.40
2827 3041 8.964476 TCTTTTCTTCTCTTCTGCTCTTTTTA 57.036 30.769 0.00 0.00 0.00 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 0.667993 TTCTTTTCAGGCAACGCAGG 59.332 50.000 0.00 0.00 46.39 4.85
34 35 1.535860 GCTTTCTTTTCAGGCAACGCA 60.536 47.619 0.00 0.00 46.39 5.24
99 100 1.977293 GCTCAGTGGGGAGGGATGTC 61.977 65.000 0.00 0.00 35.41 3.06
114 115 4.843728 ACTTAATTCATTTCCCGAGCTCA 58.156 39.130 15.40 0.00 0.00 4.26
173 174 2.857748 CAAAGACGGCCAAAAAGTTGAC 59.142 45.455 2.24 0.00 36.83 3.18
196 197 2.461300 TTCATGGTGGTTTTGGTGGA 57.539 45.000 0.00 0.00 0.00 4.02
250 251 3.414700 CGGCTGTCAGTGCGGAAC 61.415 66.667 0.93 0.00 33.45 3.62
251 252 4.680237 CCGGCTGTCAGTGCGGAA 62.680 66.667 0.93 0.00 33.45 4.30
265 266 0.815615 GTAGAAATCCTGCCAGCCGG 60.816 60.000 0.00 0.00 0.00 6.13
266 267 0.815615 GGTAGAAATCCTGCCAGCCG 60.816 60.000 0.00 0.00 45.75 5.52
267 268 3.102090 GGTAGAAATCCTGCCAGCC 57.898 57.895 0.00 0.00 45.75 4.85
271 272 0.919710 AGTGGGGTAGAAATCCTGCC 59.080 55.000 0.00 0.00 45.73 4.85
272 273 3.648545 AGATAGTGGGGTAGAAATCCTGC 59.351 47.826 0.00 0.00 0.00 4.85
273 274 4.656112 ACAGATAGTGGGGTAGAAATCCTG 59.344 45.833 0.00 0.00 0.00 3.86
274 275 4.897051 ACAGATAGTGGGGTAGAAATCCT 58.103 43.478 0.00 0.00 0.00 3.24
275 276 4.262079 CGACAGATAGTGGGGTAGAAATCC 60.262 50.000 0.00 0.00 0.00 3.01
276 277 4.341520 ACGACAGATAGTGGGGTAGAAATC 59.658 45.833 0.00 0.00 0.00 2.17
277 278 4.287552 ACGACAGATAGTGGGGTAGAAAT 58.712 43.478 0.00 0.00 0.00 2.17
278 279 3.705051 ACGACAGATAGTGGGGTAGAAA 58.295 45.455 0.00 0.00 0.00 2.52
279 280 3.377253 ACGACAGATAGTGGGGTAGAA 57.623 47.619 0.00 0.00 0.00 2.10
280 281 3.457380 AGTACGACAGATAGTGGGGTAGA 59.543 47.826 0.00 0.00 0.00 2.59
281 282 3.814283 GAGTACGACAGATAGTGGGGTAG 59.186 52.174 0.00 0.00 0.00 3.18
282 283 3.434167 GGAGTACGACAGATAGTGGGGTA 60.434 52.174 0.00 0.00 0.00 3.69
283 284 2.652590 GAGTACGACAGATAGTGGGGT 58.347 52.381 0.00 0.00 0.00 4.95
284 285 1.955080 GGAGTACGACAGATAGTGGGG 59.045 57.143 0.00 0.00 0.00 4.96
285 286 1.955080 GGGAGTACGACAGATAGTGGG 59.045 57.143 0.00 0.00 0.00 4.61
286 287 1.602851 CGGGAGTACGACAGATAGTGG 59.397 57.143 0.00 0.00 35.47 4.00
287 288 2.558378 TCGGGAGTACGACAGATAGTG 58.442 52.381 0.00 0.00 38.06 2.74
288 289 2.996249 TCGGGAGTACGACAGATAGT 57.004 50.000 0.00 0.00 38.06 2.12
289 290 3.666274 AGATCGGGAGTACGACAGATAG 58.334 50.000 5.72 0.00 46.64 2.08
290 291 3.556633 GGAGATCGGGAGTACGACAGATA 60.557 52.174 5.72 0.00 46.64 1.98
291 292 2.496111 GAGATCGGGAGTACGACAGAT 58.504 52.381 5.48 5.48 46.64 2.90
292 293 1.474677 GGAGATCGGGAGTACGACAGA 60.475 57.143 0.00 0.00 46.64 3.41
293 294 0.945813 GGAGATCGGGAGTACGACAG 59.054 60.000 0.00 0.00 46.64 3.51
294 295 0.812811 CGGAGATCGGGAGTACGACA 60.813 60.000 0.00 0.00 46.64 4.35
295 296 1.940334 CGGAGATCGGGAGTACGAC 59.060 63.158 0.00 0.00 46.64 4.34
297 298 2.638154 GCGGAGATCGGGAGTACG 59.362 66.667 0.00 0.00 39.69 3.67
298 299 1.528776 AGGCGGAGATCGGGAGTAC 60.529 63.158 0.00 0.00 39.69 2.73
299 300 1.528542 CAGGCGGAGATCGGGAGTA 60.529 63.158 0.00 0.00 39.69 2.59
300 301 2.835431 CAGGCGGAGATCGGGAGT 60.835 66.667 0.00 0.00 39.69 3.85
301 302 4.292178 GCAGGCGGAGATCGGGAG 62.292 72.222 0.00 0.00 39.69 4.30
303 304 3.466791 AATGCAGGCGGAGATCGGG 62.467 63.158 0.00 0.00 39.69 5.14
304 305 2.109799 AATGCAGGCGGAGATCGG 59.890 61.111 0.00 0.00 39.69 4.18
305 306 2.249535 CCAATGCAGGCGGAGATCG 61.250 63.158 0.00 0.00 42.76 3.69
306 307 1.146930 TCCAATGCAGGCGGAGATC 59.853 57.895 0.00 0.00 0.00 2.75
307 308 3.323622 TCCAATGCAGGCGGAGAT 58.676 55.556 0.00 0.00 0.00 2.75
309 310 1.817099 GTCTCCAATGCAGGCGGAG 60.817 63.158 18.40 18.40 46.49 4.63
310 311 2.268920 GTCTCCAATGCAGGCGGA 59.731 61.111 0.00 0.00 0.00 5.54
311 312 2.046023 TGTCTCCAATGCAGGCGG 60.046 61.111 0.00 0.00 0.00 6.13
312 313 1.376424 ACTGTCTCCAATGCAGGCG 60.376 57.895 0.00 0.00 34.79 5.52
313 314 1.310933 CCACTGTCTCCAATGCAGGC 61.311 60.000 0.00 0.00 34.79 4.85
314 315 0.037303 ACCACTGTCTCCAATGCAGG 59.963 55.000 0.00 0.00 34.79 4.85
315 316 1.271001 TGACCACTGTCTCCAATGCAG 60.271 52.381 0.00 0.00 42.28 4.41
316 317 0.764271 TGACCACTGTCTCCAATGCA 59.236 50.000 0.00 0.00 42.28 3.96
317 318 1.160137 GTGACCACTGTCTCCAATGC 58.840 55.000 0.00 0.00 42.28 3.56
323 324 3.896317 GTCAGGTGACCACTGTCTC 57.104 57.895 3.63 0.00 42.28 3.36
332 333 2.851195 AGTGTGATTTGGTCAGGTGAC 58.149 47.619 1.17 1.17 44.04 3.67
333 334 3.576078 AAGTGTGATTTGGTCAGGTGA 57.424 42.857 0.00 0.00 37.56 4.02
334 335 3.885297 AGAAAGTGTGATTTGGTCAGGTG 59.115 43.478 0.00 0.00 37.56 4.00
335 336 3.885297 CAGAAAGTGTGATTTGGTCAGGT 59.115 43.478 0.00 0.00 37.56 4.00
336 337 3.885297 ACAGAAAGTGTGATTTGGTCAGG 59.115 43.478 0.00 0.00 38.28 3.86
350 351 9.571816 AAGTAGTAGTAGTAGTTCACAGAAAGT 57.428 33.333 0.00 0.00 0.00 2.66
351 352 9.828852 CAAGTAGTAGTAGTAGTTCACAGAAAG 57.171 37.037 2.57 0.00 0.00 2.62
352 353 8.295288 GCAAGTAGTAGTAGTAGTTCACAGAAA 58.705 37.037 2.57 0.00 0.00 2.52
353 354 7.360691 CGCAAGTAGTAGTAGTAGTTCACAGAA 60.361 40.741 2.57 0.00 0.00 3.02
354 355 6.091849 CGCAAGTAGTAGTAGTAGTTCACAGA 59.908 42.308 2.57 0.00 0.00 3.41
355 356 6.249359 CGCAAGTAGTAGTAGTAGTTCACAG 58.751 44.000 2.57 0.00 0.00 3.66
356 357 6.174451 CGCAAGTAGTAGTAGTAGTTCACA 57.826 41.667 2.57 0.00 0.00 3.58
370 371 8.336080 CTTTAAGAGAAAAGAAACGCAAGTAGT 58.664 33.333 0.00 0.00 44.00 2.73
371 372 7.321509 GCTTTAAGAGAAAAGAAACGCAAGTAG 59.678 37.037 0.00 0.00 44.00 2.57
372 373 7.130269 GCTTTAAGAGAAAAGAAACGCAAGTA 58.870 34.615 0.00 0.00 44.00 2.24
373 374 5.971792 GCTTTAAGAGAAAAGAAACGCAAGT 59.028 36.000 0.00 0.00 45.61 3.16
374 375 5.971202 TGCTTTAAGAGAAAAGAAACGCAAG 59.029 36.000 0.00 0.00 38.50 4.01
375 376 5.741982 GTGCTTTAAGAGAAAAGAAACGCAA 59.258 36.000 0.00 0.00 38.50 4.85
376 377 5.163703 TGTGCTTTAAGAGAAAAGAAACGCA 60.164 36.000 0.00 0.00 38.50 5.24
377 378 5.270853 TGTGCTTTAAGAGAAAAGAAACGC 58.729 37.500 0.00 0.00 38.50 4.84
378 379 6.487103 ACTGTGCTTTAAGAGAAAAGAAACG 58.513 36.000 0.00 0.00 38.50 3.60
379 380 9.952188 AATACTGTGCTTTAAGAGAAAAGAAAC 57.048 29.630 0.00 0.00 38.50 2.78
403 404 9.653287 CCATGTGAGATTGTACGGTATAATAAT 57.347 33.333 9.70 3.09 0.00 1.28
404 405 7.601130 GCCATGTGAGATTGTACGGTATAATAA 59.399 37.037 9.70 0.00 0.00 1.40
405 406 7.039293 AGCCATGTGAGATTGTACGGTATAATA 60.039 37.037 9.70 0.00 0.00 0.98
406 407 5.932303 GCCATGTGAGATTGTACGGTATAAT 59.068 40.000 9.53 9.53 0.00 1.28
407 408 5.069914 AGCCATGTGAGATTGTACGGTATAA 59.930 40.000 0.00 0.00 0.00 0.98
408 409 4.587262 AGCCATGTGAGATTGTACGGTATA 59.413 41.667 0.00 0.00 0.00 1.47
409 410 3.388024 AGCCATGTGAGATTGTACGGTAT 59.612 43.478 0.00 0.00 0.00 2.73
410 411 2.764010 AGCCATGTGAGATTGTACGGTA 59.236 45.455 0.00 0.00 0.00 4.02
411 412 1.555075 AGCCATGTGAGATTGTACGGT 59.445 47.619 0.00 0.00 0.00 4.83
412 413 2.315925 AGCCATGTGAGATTGTACGG 57.684 50.000 0.00 0.00 0.00 4.02
413 414 3.728864 GCAAAGCCATGTGAGATTGTACG 60.729 47.826 0.00 0.00 0.00 3.67
414 415 3.762779 GCAAAGCCATGTGAGATTGTAC 58.237 45.455 0.00 0.00 0.00 2.90
429 430 3.376546 CAGAAGACAGAATAGGGCAAAGC 59.623 47.826 0.00 0.00 0.00 3.51
430 431 3.376546 GCAGAAGACAGAATAGGGCAAAG 59.623 47.826 0.00 0.00 0.00 2.77
431 432 3.347216 GCAGAAGACAGAATAGGGCAAA 58.653 45.455 0.00 0.00 0.00 3.68
432 433 2.677902 CGCAGAAGACAGAATAGGGCAA 60.678 50.000 0.00 0.00 0.00 4.52
433 434 1.134699 CGCAGAAGACAGAATAGGGCA 60.135 52.381 0.00 0.00 0.00 5.36
434 435 1.134670 ACGCAGAAGACAGAATAGGGC 60.135 52.381 0.00 0.00 0.00 5.19
435 436 2.969628 ACGCAGAAGACAGAATAGGG 57.030 50.000 0.00 0.00 0.00 3.53
436 437 3.849911 TGAACGCAGAAGACAGAATAGG 58.150 45.455 0.00 0.00 0.00 2.57
437 438 4.505922 GGATGAACGCAGAAGACAGAATAG 59.494 45.833 0.00 0.00 0.00 1.73
438 439 4.160439 AGGATGAACGCAGAAGACAGAATA 59.840 41.667 0.00 0.00 0.00 1.75
439 440 3.055530 AGGATGAACGCAGAAGACAGAAT 60.056 43.478 0.00 0.00 0.00 2.40
440 441 2.300152 AGGATGAACGCAGAAGACAGAA 59.700 45.455 0.00 0.00 0.00 3.02
441 442 1.895798 AGGATGAACGCAGAAGACAGA 59.104 47.619 0.00 0.00 0.00 3.41
442 443 2.376808 AGGATGAACGCAGAAGACAG 57.623 50.000 0.00 0.00 0.00 3.51
443 444 2.839486 AAGGATGAACGCAGAAGACA 57.161 45.000 0.00 0.00 0.00 3.41
444 445 3.498397 TCAAAAGGATGAACGCAGAAGAC 59.502 43.478 0.00 0.00 0.00 3.01
445 446 3.738982 TCAAAAGGATGAACGCAGAAGA 58.261 40.909 0.00 0.00 0.00 2.87
446 447 3.120060 CCTCAAAAGGATGAACGCAGAAG 60.120 47.826 0.00 0.00 46.67 2.85
447 448 2.813754 CCTCAAAAGGATGAACGCAGAA 59.186 45.455 0.00 0.00 46.67 3.02
448 449 2.224523 ACCTCAAAAGGATGAACGCAGA 60.225 45.455 0.00 0.00 46.67 4.26
449 450 2.095567 CACCTCAAAAGGATGAACGCAG 60.096 50.000 0.00 0.00 46.67 5.18
450 451 1.879380 CACCTCAAAAGGATGAACGCA 59.121 47.619 0.00 0.00 46.67 5.24
451 452 2.095718 GTCACCTCAAAAGGATGAACGC 60.096 50.000 0.00 0.00 46.67 4.84
452 453 3.138304 TGTCACCTCAAAAGGATGAACG 58.862 45.455 0.00 0.00 46.67 3.95
453 454 4.580580 AGTTGTCACCTCAAAAGGATGAAC 59.419 41.667 0.00 0.00 46.67 3.18
454 455 4.580167 CAGTTGTCACCTCAAAAGGATGAA 59.420 41.667 0.00 0.00 46.67 2.57
455 456 4.136796 CAGTTGTCACCTCAAAAGGATGA 58.863 43.478 0.00 0.00 46.67 2.92
456 457 3.254166 CCAGTTGTCACCTCAAAAGGATG 59.746 47.826 0.00 0.00 46.67 3.51
457 458 3.490348 CCAGTTGTCACCTCAAAAGGAT 58.510 45.455 0.00 0.00 46.67 3.24
458 459 2.930950 CCAGTTGTCACCTCAAAAGGA 58.069 47.619 0.00 0.00 46.67 3.36
460 461 1.338020 GGCCAGTTGTCACCTCAAAAG 59.662 52.381 0.00 0.00 0.00 2.27
461 462 1.341482 TGGCCAGTTGTCACCTCAAAA 60.341 47.619 0.00 0.00 0.00 2.44
462 463 0.257328 TGGCCAGTTGTCACCTCAAA 59.743 50.000 0.00 0.00 0.00 2.69
463 464 0.257328 TTGGCCAGTTGTCACCTCAA 59.743 50.000 5.11 0.00 0.00 3.02
464 465 0.465460 GTTGGCCAGTTGTCACCTCA 60.465 55.000 5.11 0.00 0.00 3.86
465 466 1.172812 GGTTGGCCAGTTGTCACCTC 61.173 60.000 13.79 0.00 34.09 3.85
466 467 1.152756 GGTTGGCCAGTTGTCACCT 60.153 57.895 13.79 0.00 34.09 4.00
467 468 1.454847 TGGTTGGCCAGTTGTCACC 60.455 57.895 14.13 14.13 40.46 4.02
468 469 4.251246 TGGTTGGCCAGTTGTCAC 57.749 55.556 5.11 0.00 40.46 3.67
479 480 6.248433 AGACAATATATTAGGCCATGGTTGG 58.752 40.000 14.67 0.00 46.66 3.77
480 481 7.094205 GGAAGACAATATATTAGGCCATGGTTG 60.094 40.741 14.67 8.88 0.00 3.77
481 482 6.948309 GGAAGACAATATATTAGGCCATGGTT 59.052 38.462 14.67 4.81 0.00 3.67
482 483 6.045459 TGGAAGACAATATATTAGGCCATGGT 59.955 38.462 14.67 0.00 0.00 3.55
483 484 6.484288 TGGAAGACAATATATTAGGCCATGG 58.516 40.000 7.63 7.63 0.00 3.66
484 485 8.408043 TTTGGAAGACAATATATTAGGCCATG 57.592 34.615 5.01 0.00 39.21 3.66
485 486 8.448008 TCTTTGGAAGACAATATATTAGGCCAT 58.552 33.333 5.01 0.00 39.21 4.40
486 487 7.811282 TCTTTGGAAGACAATATATTAGGCCA 58.189 34.615 5.01 0.00 39.21 5.36
487 488 8.870075 ATCTTTGGAAGACAATATATTAGGCC 57.130 34.615 0.00 0.00 41.01 5.19
488 489 8.951243 GGATCTTTGGAAGACAATATATTAGGC 58.049 37.037 0.00 0.00 41.01 3.93
489 490 9.155975 CGGATCTTTGGAAGACAATATATTAGG 57.844 37.037 0.00 0.00 41.01 2.69
490 491 9.155975 CCGGATCTTTGGAAGACAATATATTAG 57.844 37.037 0.00 0.00 41.01 1.73
491 492 8.876181 TCCGGATCTTTGGAAGACAATATATTA 58.124 33.333 0.00 0.00 41.01 0.98
492 493 7.745717 TCCGGATCTTTGGAAGACAATATATT 58.254 34.615 0.00 0.00 41.01 1.28
493 494 7.316393 TCCGGATCTTTGGAAGACAATATAT 57.684 36.000 0.00 0.00 41.01 0.86
494 495 6.740944 TCCGGATCTTTGGAAGACAATATA 57.259 37.500 0.00 0.00 41.01 0.86
495 496 5.630415 TCCGGATCTTTGGAAGACAATAT 57.370 39.130 0.00 0.00 41.01 1.28
496 497 5.045869 AGTTCCGGATCTTTGGAAGACAATA 60.046 40.000 4.15 0.00 44.55 1.90
497 498 4.010349 GTTCCGGATCTTTGGAAGACAAT 58.990 43.478 4.15 0.00 44.55 2.71
498 499 3.072476 AGTTCCGGATCTTTGGAAGACAA 59.928 43.478 4.15 0.00 44.55 3.18
499 500 2.637872 AGTTCCGGATCTTTGGAAGACA 59.362 45.455 4.15 0.00 44.55 3.41
500 501 3.003480 CAGTTCCGGATCTTTGGAAGAC 58.997 50.000 12.50 0.00 44.55 3.01
501 502 2.615493 GCAGTTCCGGATCTTTGGAAGA 60.615 50.000 12.50 0.00 44.55 2.87
502 503 1.740025 GCAGTTCCGGATCTTTGGAAG 59.260 52.381 12.50 1.95 44.55 3.46
503 504 1.073125 TGCAGTTCCGGATCTTTGGAA 59.927 47.619 12.50 9.58 41.83 3.53
504 505 0.690192 TGCAGTTCCGGATCTTTGGA 59.310 50.000 12.50 2.25 0.00 3.53
505 506 1.089920 CTGCAGTTCCGGATCTTTGG 58.910 55.000 12.50 3.36 0.00 3.28
506 507 1.089920 CCTGCAGTTCCGGATCTTTG 58.910 55.000 12.50 4.97 0.00 2.77
507 508 0.035056 CCCTGCAGTTCCGGATCTTT 60.035 55.000 12.50 0.00 0.00 2.52
508 509 1.604378 CCCTGCAGTTCCGGATCTT 59.396 57.895 12.50 0.00 0.00 2.40
509 510 3.036429 GCCCTGCAGTTCCGGATCT 62.036 63.158 13.81 7.22 0.00 2.75
510 511 2.514824 GCCCTGCAGTTCCGGATC 60.515 66.667 13.81 4.19 0.00 3.36
511 512 4.115199 GGCCCTGCAGTTCCGGAT 62.115 66.667 13.81 0.00 0.00 4.18
512 513 3.916438 TAGGCCCTGCAGTTCCGGA 62.916 63.158 13.81 0.00 0.00 5.14
513 514 2.478335 TTTAGGCCCTGCAGTTCCGG 62.478 60.000 13.81 7.70 0.00 5.14
514 515 0.394352 ATTTAGGCCCTGCAGTTCCG 60.394 55.000 13.81 0.00 0.00 4.30
515 516 1.106285 CATTTAGGCCCTGCAGTTCC 58.894 55.000 13.81 12.89 0.00 3.62
516 517 1.106285 CCATTTAGGCCCTGCAGTTC 58.894 55.000 13.81 3.31 0.00 3.01
517 518 0.409484 ACCATTTAGGCCCTGCAGTT 59.591 50.000 13.81 0.00 43.14 3.16
518 519 0.409484 AACCATTTAGGCCCTGCAGT 59.591 50.000 13.81 0.00 43.14 4.40
519 520 1.560505 AAACCATTTAGGCCCTGCAG 58.439 50.000 6.78 6.78 43.14 4.41
520 521 1.622811 CAAAACCATTTAGGCCCTGCA 59.377 47.619 0.00 0.00 43.14 4.41
521 522 1.675714 GCAAAACCATTTAGGCCCTGC 60.676 52.381 0.00 0.00 43.14 4.85
522 523 1.622811 TGCAAAACCATTTAGGCCCTG 59.377 47.619 0.00 0.00 43.14 4.45
523 524 1.901833 CTGCAAAACCATTTAGGCCCT 59.098 47.619 0.00 0.00 43.14 5.19
524 525 1.675714 GCTGCAAAACCATTTAGGCCC 60.676 52.381 0.00 0.00 43.14 5.80
525 526 1.276138 AGCTGCAAAACCATTTAGGCC 59.724 47.619 1.02 0.00 43.14 5.19
526 527 2.340337 CAGCTGCAAAACCATTTAGGC 58.660 47.619 0.00 0.00 43.14 3.93
527 528 2.932187 GCCAGCTGCAAAACCATTTAGG 60.932 50.000 8.66 0.00 41.42 2.69
528 529 2.340337 GCCAGCTGCAAAACCATTTAG 58.660 47.619 8.66 0.00 40.77 1.85
529 530 1.336702 CGCCAGCTGCAAAACCATTTA 60.337 47.619 8.66 0.00 41.33 1.40
530 531 0.600782 CGCCAGCTGCAAAACCATTT 60.601 50.000 8.66 0.00 41.33 2.32
531 532 1.005867 CGCCAGCTGCAAAACCATT 60.006 52.632 8.66 0.00 41.33 3.16
532 533 1.902918 TCGCCAGCTGCAAAACCAT 60.903 52.632 8.66 0.00 41.33 3.55
533 534 2.518112 TCGCCAGCTGCAAAACCA 60.518 55.556 8.66 0.00 41.33 3.67
534 535 2.050077 GTCGCCAGCTGCAAAACC 60.050 61.111 8.66 0.00 41.33 3.27
535 536 2.427410 CGTCGCCAGCTGCAAAAC 60.427 61.111 8.66 2.49 41.33 2.43
536 537 2.590291 TCGTCGCCAGCTGCAAAA 60.590 55.556 8.66 0.00 41.33 2.44
537 538 2.786539 ATCTCGTCGCCAGCTGCAAA 62.787 55.000 8.66 0.00 41.33 3.68
538 539 3.300934 ATCTCGTCGCCAGCTGCAA 62.301 57.895 8.66 0.00 41.33 4.08
539 540 3.706563 GATCTCGTCGCCAGCTGCA 62.707 63.158 8.66 0.00 41.33 4.41
540 541 2.959071 GATCTCGTCGCCAGCTGC 60.959 66.667 8.66 2.87 0.00 5.25
541 542 1.144565 CTTGATCTCGTCGCCAGCTG 61.145 60.000 6.78 6.78 0.00 4.24
542 543 1.140589 CTTGATCTCGTCGCCAGCT 59.859 57.895 0.00 0.00 0.00 4.24
543 544 0.100682 TACTTGATCTCGTCGCCAGC 59.899 55.000 0.00 0.00 0.00 4.85
544 545 1.402259 ACTACTTGATCTCGTCGCCAG 59.598 52.381 0.00 0.00 0.00 4.85
545 546 1.460504 ACTACTTGATCTCGTCGCCA 58.539 50.000 0.00 0.00 0.00 5.69
546 547 2.097791 AGAACTACTTGATCTCGTCGCC 59.902 50.000 0.00 0.00 0.00 5.54
547 548 3.408288 AGAACTACTTGATCTCGTCGC 57.592 47.619 0.00 0.00 0.00 5.19
548 549 6.469595 CCTAAAAGAACTACTTGATCTCGTCG 59.530 42.308 0.00 0.00 38.98 5.12
549 550 7.536855 TCCTAAAAGAACTACTTGATCTCGTC 58.463 38.462 0.00 0.00 38.98 4.20
550 551 7.363094 CCTCCTAAAAGAACTACTTGATCTCGT 60.363 40.741 0.00 0.00 38.98 4.18
551 552 6.975772 CCTCCTAAAAGAACTACTTGATCTCG 59.024 42.308 0.00 0.00 38.98 4.04
552 553 7.269316 CCCTCCTAAAAGAACTACTTGATCTC 58.731 42.308 0.00 0.00 38.98 2.75
553 554 6.157123 CCCCTCCTAAAAGAACTACTTGATCT 59.843 42.308 0.00 0.00 38.98 2.75
554 555 6.156429 TCCCCTCCTAAAAGAACTACTTGATC 59.844 42.308 0.00 0.00 38.98 2.92
555 556 6.030082 TCCCCTCCTAAAAGAACTACTTGAT 58.970 40.000 0.00 0.00 38.98 2.57
556 557 5.408824 TCCCCTCCTAAAAGAACTACTTGA 58.591 41.667 0.00 0.00 38.98 3.02
557 558 5.757099 TCCCCTCCTAAAAGAACTACTTG 57.243 43.478 0.00 0.00 38.98 3.16
558 559 6.089502 TCTTCCCCTCCTAAAAGAACTACTT 58.910 40.000 0.00 0.00 40.98 2.24
559 560 5.662597 TCTTCCCCTCCTAAAAGAACTACT 58.337 41.667 0.00 0.00 0.00 2.57
560 561 6.370186 TTCTTCCCCTCCTAAAAGAACTAC 57.630 41.667 0.00 0.00 33.91 2.73
561 562 6.521942 GCTTTCTTCCCCTCCTAAAAGAACTA 60.522 42.308 0.00 0.00 37.44 2.24
562 563 5.749331 GCTTTCTTCCCCTCCTAAAAGAACT 60.749 44.000 0.00 0.00 37.44 3.01
563 564 4.459685 GCTTTCTTCCCCTCCTAAAAGAAC 59.540 45.833 0.00 0.00 37.44 3.01
564 565 4.508584 GGCTTTCTTCCCCTCCTAAAAGAA 60.509 45.833 0.00 0.00 36.29 2.52
565 566 3.010250 GGCTTTCTTCCCCTCCTAAAAGA 59.990 47.826 0.00 0.00 0.00 2.52
566 567 3.357203 GGCTTTCTTCCCCTCCTAAAAG 58.643 50.000 0.00 0.00 0.00 2.27
567 568 2.290705 CGGCTTTCTTCCCCTCCTAAAA 60.291 50.000 0.00 0.00 0.00 1.52
568 569 1.280998 CGGCTTTCTTCCCCTCCTAAA 59.719 52.381 0.00 0.00 0.00 1.85
569 570 0.909623 CGGCTTTCTTCCCCTCCTAA 59.090 55.000 0.00 0.00 0.00 2.69
570 571 0.981277 CCGGCTTTCTTCCCCTCCTA 60.981 60.000 0.00 0.00 0.00 2.94
571 572 2.301738 CCGGCTTTCTTCCCCTCCT 61.302 63.158 0.00 0.00 0.00 3.69
572 573 2.272471 CCGGCTTTCTTCCCCTCC 59.728 66.667 0.00 0.00 0.00 4.30
573 574 2.138453 AACCCGGCTTTCTTCCCCTC 62.138 60.000 0.00 0.00 0.00 4.30
574 575 2.138453 GAACCCGGCTTTCTTCCCCT 62.138 60.000 0.00 0.00 0.00 4.79
575 576 1.677966 GAACCCGGCTTTCTTCCCC 60.678 63.158 0.00 0.00 0.00 4.81
576 577 2.038837 CGAACCCGGCTTTCTTCCC 61.039 63.158 11.15 0.00 0.00 3.97
577 578 0.887836 AACGAACCCGGCTTTCTTCC 60.888 55.000 11.15 0.00 40.78 3.46
578 579 0.237498 CAACGAACCCGGCTTTCTTC 59.763 55.000 11.15 0.00 40.78 2.87
579 580 1.792118 GCAACGAACCCGGCTTTCTT 61.792 55.000 11.15 0.85 40.78 2.52
580 581 2.258726 GCAACGAACCCGGCTTTCT 61.259 57.895 11.15 0.00 40.78 2.52
581 582 2.254350 GCAACGAACCCGGCTTTC 59.746 61.111 0.00 0.00 40.78 2.62
582 583 2.517402 TGCAACGAACCCGGCTTT 60.517 55.556 0.00 0.00 40.78 3.51
583 584 2.978010 CTGCAACGAACCCGGCTT 60.978 61.111 0.00 0.00 40.78 4.35
586 587 2.742372 CTCCTGCAACGAACCCGG 60.742 66.667 0.00 0.00 40.78 5.73
587 588 2.742372 CCTCCTGCAACGAACCCG 60.742 66.667 0.00 0.00 42.50 5.28
588 589 3.056328 GCCTCCTGCAACGAACCC 61.056 66.667 0.00 0.00 40.77 4.11
589 590 3.423154 CGCCTCCTGCAACGAACC 61.423 66.667 0.00 0.00 41.33 3.62
590 591 4.090057 GCGCCTCCTGCAACGAAC 62.090 66.667 0.00 0.00 41.33 3.95
606 607 3.816367 GATGGCTCCTAGGGCACGC 62.816 68.421 19.85 12.67 44.25 5.34
607 608 2.093537 GAGATGGCTCCTAGGGCACG 62.094 65.000 19.85 4.70 44.25 5.34
608 609 1.751563 GAGATGGCTCCTAGGGCAC 59.248 63.158 19.85 11.86 44.25 5.01
609 610 4.302622 GAGATGGCTCCTAGGGCA 57.697 61.111 19.85 10.43 45.45 5.36
620 621 3.350909 TTGTCGACGCCGGAGATGG 62.351 63.158 13.83 0.00 36.24 3.51
621 622 2.158959 GTTGTCGACGCCGGAGATG 61.159 63.158 13.83 3.37 36.24 2.90
622 623 2.181021 GTTGTCGACGCCGGAGAT 59.819 61.111 13.83 0.00 36.24 2.75
623 624 4.394078 CGTTGTCGACGCCGGAGA 62.394 66.667 13.83 0.00 45.86 3.71
640 641 4.671569 CCGAGGGCCGCATCTAGC 62.672 72.222 8.33 0.00 40.87 3.42
641 642 2.219325 GATCCGAGGGCCGCATCTAG 62.219 65.000 8.33 0.00 32.85 2.43
642 643 2.203640 ATCCGAGGGCCGCATCTA 60.204 61.111 8.33 0.00 36.84 1.98
643 644 3.620785 GATCCGAGGGCCGCATCT 61.621 66.667 8.33 0.00 32.85 2.90
644 645 3.620785 AGATCCGAGGGCCGCATC 61.621 66.667 8.33 3.71 35.73 3.91
645 646 3.933722 CAGATCCGAGGGCCGCAT 61.934 66.667 8.33 0.00 36.84 4.73
650 651 3.581687 GATCCGCAGATCCGAGGGC 62.582 68.421 0.00 0.00 42.78 5.19
651 652 2.653702 GATCCGCAGATCCGAGGG 59.346 66.667 0.00 0.00 42.78 4.30
652 653 2.256764 CGATCCGCAGATCCGAGG 59.743 66.667 4.33 0.00 45.32 4.63
653 654 1.796190 TTCCGATCCGCAGATCCGAG 61.796 60.000 4.33 0.00 45.32 4.63
654 655 1.796190 CTTCCGATCCGCAGATCCGA 61.796 60.000 4.33 0.85 45.32 4.55
655 656 1.372251 CTTCCGATCCGCAGATCCG 60.372 63.158 4.33 0.00 45.32 4.18
656 657 1.666234 GCTTCCGATCCGCAGATCC 60.666 63.158 4.33 0.00 45.32 3.36
657 658 1.666234 GGCTTCCGATCCGCAGATC 60.666 63.158 0.00 0.00 44.76 2.75
658 659 2.374830 CTGGCTTCCGATCCGCAGAT 62.375 60.000 0.00 0.00 34.57 2.90
659 660 3.074369 TGGCTTCCGATCCGCAGA 61.074 61.111 0.00 0.00 0.00 4.26
660 661 2.587194 CTGGCTTCCGATCCGCAG 60.587 66.667 0.00 0.00 0.00 5.18
661 662 4.161295 CCTGGCTTCCGATCCGCA 62.161 66.667 0.00 0.00 0.00 5.69
662 663 4.918201 CCCTGGCTTCCGATCCGC 62.918 72.222 0.00 0.00 0.00 5.54
663 664 3.470888 ACCCTGGCTTCCGATCCG 61.471 66.667 0.00 0.00 0.00 4.18
664 665 2.190578 CACCCTGGCTTCCGATCC 59.809 66.667 0.00 0.00 0.00 3.36
665 666 2.190578 CCACCCTGGCTTCCGATC 59.809 66.667 0.00 0.00 0.00 3.69
674 675 0.474184 AATTATCTCGGCCACCCTGG 59.526 55.000 2.24 0.00 41.55 4.45
675 676 1.597742 CAATTATCTCGGCCACCCTG 58.402 55.000 2.24 0.00 0.00 4.45
676 677 0.179018 GCAATTATCTCGGCCACCCT 60.179 55.000 2.24 0.00 0.00 4.34
677 678 0.465460 TGCAATTATCTCGGCCACCC 60.465 55.000 2.24 0.00 0.00 4.61
678 679 1.537202 GATGCAATTATCTCGGCCACC 59.463 52.381 2.24 0.00 0.00 4.61
679 680 2.498167 AGATGCAATTATCTCGGCCAC 58.502 47.619 2.24 0.00 31.97 5.01
680 681 2.936919 AGATGCAATTATCTCGGCCA 57.063 45.000 2.24 0.00 31.97 5.36
681 682 5.665459 ACTATAGATGCAATTATCTCGGCC 58.335 41.667 6.78 0.00 38.35 6.13
682 683 5.751028 GGACTATAGATGCAATTATCTCGGC 59.249 44.000 6.78 0.00 38.35 5.54
814 815 1.153745 CGTGTAGAGCCAGGACTGC 60.154 63.158 0.00 0.00 0.00 4.40
1089 1119 2.105128 CTGCGACTCGATCCACCC 59.895 66.667 1.63 0.00 0.00 4.61
1324 1354 0.035152 ATGCTCAACTCCGATGGCAA 60.035 50.000 0.00 0.00 33.44 4.52
1972 2011 5.236695 GTGGTTCAGACTCTTTTACACCTTC 59.763 44.000 0.00 0.00 0.00 3.46
2044 2083 5.924475 AGATACCAAGTTCACAAAAGACG 57.076 39.130 0.00 0.00 0.00 4.18
2827 3041 9.481340 GAAAAGAATAACAGAAGAGGCAAAAAT 57.519 29.630 0.00 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.