Multiple sequence alignment - TraesCS1B01G215400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G215400 chr1B 100.000 5102 0 0 1 5102 390883421 390878320 0.000000e+00 9422.0
1 TraesCS1B01G215400 chr1B 89.236 288 29 2 4304 4589 335975143 335974856 4.860000e-95 359.0
2 TraesCS1B01G215400 chr1A 94.567 3479 88 38 897 4307 362063308 362059863 0.000000e+00 5284.0
3 TraesCS1B01G215400 chr1A 87.868 544 60 4 34 577 362065936 362065399 7.210000e-178 634.0
4 TraesCS1B01G215400 chr1A 96.094 128 4 1 4587 4714 362059867 362059741 1.860000e-49 207.0
5 TraesCS1B01G215400 chr1A 95.833 48 1 1 4830 4876 362059743 362059696 5.480000e-10 76.8
6 TraesCS1B01G215400 chr1A 97.500 40 1 0 1 40 362065985 362065946 9.170000e-08 69.4
7 TraesCS1B01G215400 chr1A 92.857 42 3 0 673 714 97789643 97789684 1.530000e-05 62.1
8 TraesCS1B01G215400 chr1D 96.277 1746 41 10 819 2551 289600697 289598963 0.000000e+00 2843.0
9 TraesCS1B01G215400 chr1D 93.964 1756 41 17 2582 4307 289598968 289597248 0.000000e+00 2595.0
10 TraesCS1B01G215400 chr1D 90.128 547 21 10 4587 5102 289575024 289574480 0.000000e+00 680.0
11 TraesCS1B01G215400 chr1D 89.964 548 21 14 4587 5102 289597252 289596707 0.000000e+00 676.0
12 TraesCS1B01G215400 chr1D 86.292 569 59 12 134 686 289601321 289600756 7.310000e-168 601.0
13 TraesCS1B01G215400 chr1D 96.220 291 9 2 4587 4876 289532036 289531747 4.620000e-130 475.0
14 TraesCS1B01G215400 chr1D 95.364 302 8 4 4006 4307 289532327 289532032 4.620000e-130 475.0
15 TraesCS1B01G215400 chr1D 95.033 302 9 4 4006 4307 289575315 289575020 2.150000e-128 470.0
16 TraesCS1B01G215400 chr1D 93.333 180 8 4 4925 5102 289519658 289519481 3.920000e-66 263.0
17 TraesCS1B01G215400 chr1D 98.387 62 1 0 730 791 289600754 289600693 5.400000e-20 110.0
18 TraesCS1B01G215400 chr1D 92.958 71 5 0 135 205 325692492 325692422 2.510000e-18 104.0
19 TraesCS1B01G215400 chr1D 89.873 79 8 0 130 208 196615151 196615073 9.040000e-18 102.0
20 TraesCS1B01G215400 chr1D 89.474 76 8 0 130 205 67824947 67824872 4.200000e-16 97.1
21 TraesCS1B01G215400 chr1D 89.333 75 6 2 130 204 203864331 203864259 5.440000e-15 93.5
22 TraesCS1B01G215400 chr2D 84.900 649 57 22 2594 3239 107864357 107864967 7.260000e-173 617.0
23 TraesCS1B01G215400 chr2D 92.105 76 5 1 130 205 508387709 508387783 6.990000e-19 106.0
24 TraesCS1B01G215400 chr2D 90.667 75 6 1 130 204 480599887 480599814 1.170000e-16 99.0
25 TraesCS1B01G215400 chr5B 90.625 288 23 3 4304 4589 139340409 139340694 3.730000e-101 379.0
26 TraesCS1B01G215400 chr5B 97.260 73 2 0 134 206 508375307 508375379 1.930000e-24 124.0
27 TraesCS1B01G215400 chr5B 96.000 75 3 0 130 204 352594603 352594677 6.940000e-24 122.0
28 TraesCS1B01G215400 chr5B 96.875 32 1 0 3449 3480 582974081 582974112 3.000000e-03 54.7
29 TraesCS1B01G215400 chr2B 87.372 293 32 4 4303 4592 769267739 769267449 1.060000e-86 331.0
30 TraesCS1B01G215400 chr2B 86.897 290 30 6 4304 4589 232780041 232780326 8.240000e-83 318.0
31 TraesCS1B01G215400 chr2B 94.667 75 4 0 130 204 596767709 596767783 3.230000e-22 117.0
32 TraesCS1B01G215400 chr2B 100.000 31 0 0 680 710 264576266 264576236 1.980000e-04 58.4
33 TraesCS1B01G215400 chr6B 87.543 289 31 4 4304 4589 644809042 644808756 3.810000e-86 329.0
34 TraesCS1B01G215400 chr4B 86.942 291 31 7 4304 4589 399269769 399269481 2.290000e-83 320.0
35 TraesCS1B01G215400 chr4B 83.904 292 40 6 4304 4592 66976600 66976313 6.510000e-69 272.0
36 TraesCS1B01G215400 chr6A 87.063 286 32 5 4304 4586 552741830 552742113 8.240000e-83 318.0
37 TraesCS1B01G215400 chr6A 86.254 291 33 5 4304 4590 594857755 594857468 4.960000e-80 309.0
38 TraesCS1B01G215400 chr6A 94.118 170 8 2 4059 4228 48520205 48520038 1.820000e-64 257.0
39 TraesCS1B01G215400 chr6A 91.525 177 10 4 4053 4226 97802514 97802688 6.600000e-59 239.0
40 TraesCS1B01G215400 chr6A 90.667 75 5 2 130 204 255139416 255139488 1.170000e-16 99.0
41 TraesCS1B01G215400 chr7A 92.090 177 8 4 4054 4226 580506694 580506868 1.420000e-60 244.0
42 TraesCS1B01G215400 chr7A 91.429 175 13 2 4058 4232 323448598 323448426 6.600000e-59 239.0
43 TraesCS1B01G215400 chr7A 92.105 38 3 0 678 715 94802144 94802181 3.000000e-03 54.7
44 TraesCS1B01G215400 chr4D 91.279 172 14 1 4059 4230 6660725 6660895 3.070000e-57 233.0
45 TraesCS1B01G215400 chr4D 94.737 76 4 0 130 205 249778554 249778629 8.970000e-23 119.0
46 TraesCS1B01G215400 chr4D 93.421 76 5 0 130 205 22882767 22882692 4.180000e-21 113.0
47 TraesCS1B01G215400 chr5D 95.062 81 3 1 130 209 315161890 315161970 5.360000e-25 126.0
48 TraesCS1B01G215400 chr5D 94.737 38 2 0 679 716 438186821 438186858 5.520000e-05 60.2
49 TraesCS1B01G215400 chr3A 94.737 76 4 0 130 205 261341291 261341366 8.970000e-23 119.0
50 TraesCS1B01G215400 chr3A 90.323 62 4 1 666 725 367796604 367796665 4.230000e-11 80.5
51 TraesCS1B01G215400 chr3A 100.000 31 0 0 680 710 112320852 112320882 1.980000e-04 58.4
52 TraesCS1B01G215400 chr3B 82.576 132 23 0 1764 1895 11211216 11211347 3.230000e-22 117.0
53 TraesCS1B01G215400 chr2A 92.000 75 6 0 130 204 152490835 152490761 6.990000e-19 106.0
54 TraesCS1B01G215400 chr7D 90.278 72 7 0 131 202 371909170 371909241 1.510000e-15 95.3
55 TraesCS1B01G215400 chr3D 90.411 73 6 1 130 202 546660130 546660201 1.510000e-15 95.3
56 TraesCS1B01G215400 chr3D 95.349 43 2 0 681 723 585996044 585996086 9.170000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G215400 chr1B 390878320 390883421 5101 True 9422.00 9422 100.0000 1 5102 1 chr1B.!!$R2 5101
1 TraesCS1B01G215400 chr1A 362059696 362065985 6289 True 1254.24 5284 94.3724 1 4876 5 chr1A.!!$R1 4875
2 TraesCS1B01G215400 chr1D 289596707 289601321 4614 True 1365.00 2843 92.9768 134 5102 5 chr1D.!!$R8 4968
3 TraesCS1B01G215400 chr1D 289574480 289575315 835 True 575.00 680 92.5805 4006 5102 2 chr1D.!!$R7 1096
4 TraesCS1B01G215400 chr1D 289531747 289532327 580 True 475.00 475 95.7920 4006 4876 2 chr1D.!!$R6 870
5 TraesCS1B01G215400 chr2D 107864357 107864967 610 False 617.00 617 84.9000 2594 3239 1 chr2D.!!$F1 645

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
40 41 0.179936 GAGCTGCCAGCAATCTACCT 59.820 55.000 20.53 0.0 45.56 3.08 F
473 491 0.533032 CACGAAGAGGGAGGAGAACC 59.467 60.000 0.00 0.0 0.00 3.62 F
773 810 0.743345 GCTCCAGCCGTTCCGTATTT 60.743 55.000 0.00 0.0 34.31 1.40 F
1503 3507 0.746063 CAAGTTGCTTGCTGGTGGAA 59.254 50.000 0.00 0.0 34.63 3.53 F
1504 3508 1.136695 CAAGTTGCTTGCTGGTGGAAA 59.863 47.619 0.00 0.0 34.63 3.13 F
2936 4950 1.137086 CCAATATATCTCCGAGGGCCG 59.863 57.143 0.00 0.0 38.18 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1510 3514 0.712380 AAAGGTTGATGGATGCCCCT 59.288 50.000 0.00 0.00 35.38 4.79 R
1511 3515 1.571955 AAAAGGTTGATGGATGCCCC 58.428 50.000 0.00 0.00 0.00 5.80 R
1893 3897 3.584733 AGTTGGGAGCTGAGAAACTTT 57.415 42.857 0.00 0.00 0.00 2.66 R
2440 4446 4.065789 GCTACCAAGTTGCTTCTAACACT 58.934 43.478 0.00 0.00 32.12 3.55 R
3055 5069 4.202050 ACAGAAACAGCTGACAACCAATTC 60.202 41.667 23.35 10.58 39.20 2.17 R
4319 6414 0.032813 TCCGGACGGAGGGAGTATTT 60.033 55.000 9.76 0.00 39.76 1.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 0.179936 GAGCTGCCAGCAATCTACCT 59.820 55.000 20.53 0.00 45.56 3.08
46 63 2.284190 GCCAGCAATCTACCTCTTCAC 58.716 52.381 0.00 0.00 0.00 3.18
53 70 5.638234 AGCAATCTACCTCTTCACGTAAAAC 59.362 40.000 0.00 0.00 0.00 2.43
66 83 6.741448 TCACGTAAAACTTGCAAATTAAGC 57.259 33.333 0.00 0.00 0.00 3.09
67 84 6.266323 TCACGTAAAACTTGCAAATTAAGCA 58.734 32.000 0.00 1.68 40.85 3.91
87 104 7.880059 AAGCAAGAAAAGACATTAGAATTGC 57.120 32.000 0.00 0.00 40.50 3.56
92 109 6.603095 AGAAAAGACATTAGAATTGCGTCAC 58.397 36.000 0.00 0.00 0.00 3.67
175 192 2.187958 ACATCACCATTCCTCTTCGGA 58.812 47.619 0.00 0.00 41.06 4.55
186 203 3.115390 TCCTCTTCGGAGAAATCCCAAT 58.885 45.455 0.00 0.00 45.90 3.16
208 225 2.799917 GCCTATCACAAGTAGCAGGACG 60.800 54.545 0.00 0.00 0.00 4.79
212 229 2.125106 CAAGTAGCAGGACGCCCC 60.125 66.667 0.00 0.00 44.04 5.80
234 251 2.281484 GCAGCAAACGACCTCCCA 60.281 61.111 0.00 0.00 0.00 4.37
243 260 1.041447 ACGACCTCCCATACCCTTCG 61.041 60.000 0.00 0.00 0.00 3.79
288 305 1.134580 CACGGAATCACAGAGGAGCAT 60.135 52.381 0.00 0.00 0.00 3.79
399 417 3.224324 GCCTCCGCGATACCTCCA 61.224 66.667 8.23 0.00 0.00 3.86
414 432 2.671619 CCACCATGGTTTCGCCGT 60.672 61.111 16.84 0.00 41.21 5.68
436 454 4.077184 TCGCCACGGAATCGCCTT 62.077 61.111 0.00 0.00 40.63 4.35
473 491 0.533032 CACGAAGAGGGAGGAGAACC 59.467 60.000 0.00 0.00 0.00 3.62
539 557 3.270877 AGAAAACGGCTACTGGCAATAG 58.729 45.455 0.00 0.00 44.01 1.73
549 567 1.559682 ACTGGCAATAGAACCGGTGAT 59.440 47.619 8.52 1.52 44.03 3.06
605 638 3.269347 GCTGTGCGTTGACGTGGT 61.269 61.111 0.00 0.00 42.22 4.16
632 665 0.976641 CCAGGAGGACTGCACTGTAA 59.023 55.000 0.00 0.00 46.14 2.41
637 670 3.196685 AGGAGGACTGCACTGTAAGATTC 59.803 47.826 0.00 0.00 37.43 2.52
673 706 2.032634 GGTGCTCGCAACATTCGGA 61.033 57.895 1.37 0.00 33.07 4.55
677 710 1.970917 GCTCGCAACATTCGGACCAG 61.971 60.000 0.00 0.00 0.00 4.00
689 722 1.227853 GGACCAGGTTGCTTCGTGT 60.228 57.895 0.00 0.00 0.00 4.49
697 730 1.334059 GGTTGCTTCGTGTCACACATG 60.334 52.381 9.06 0.00 36.48 3.21
698 731 1.330521 GTTGCTTCGTGTCACACATGT 59.669 47.619 9.06 0.00 36.53 3.21
735 772 7.489239 TTGGGAATATTTTTGGTTTAGAGGG 57.511 36.000 0.00 0.00 0.00 4.30
736 773 6.806217 TGGGAATATTTTTGGTTTAGAGGGA 58.194 36.000 0.00 0.00 0.00 4.20
737 774 6.895204 TGGGAATATTTTTGGTTTAGAGGGAG 59.105 38.462 0.00 0.00 0.00 4.30
739 776 7.399191 GGGAATATTTTTGGTTTAGAGGGAGTT 59.601 37.037 0.00 0.00 0.00 3.01
740 777 8.251026 GGAATATTTTTGGTTTAGAGGGAGTTG 58.749 37.037 0.00 0.00 0.00 3.16
741 778 7.718334 ATATTTTTGGTTTAGAGGGAGTTGG 57.282 36.000 0.00 0.00 0.00 3.77
742 779 3.518992 TTTGGTTTAGAGGGAGTTGGG 57.481 47.619 0.00 0.00 0.00 4.12
743 780 2.127651 TGGTTTAGAGGGAGTTGGGT 57.872 50.000 0.00 0.00 0.00 4.51
744 781 2.424793 TGGTTTAGAGGGAGTTGGGTT 58.575 47.619 0.00 0.00 0.00 4.11
745 782 3.600433 TGGTTTAGAGGGAGTTGGGTTA 58.400 45.455 0.00 0.00 0.00 2.85
746 783 3.982052 TGGTTTAGAGGGAGTTGGGTTAA 59.018 43.478 0.00 0.00 0.00 2.01
747 784 4.416179 TGGTTTAGAGGGAGTTGGGTTAAA 59.584 41.667 0.00 0.00 0.00 1.52
748 785 5.103601 TGGTTTAGAGGGAGTTGGGTTAAAA 60.104 40.000 0.00 0.00 0.00 1.52
749 786 5.834742 GGTTTAGAGGGAGTTGGGTTAAAAA 59.165 40.000 0.00 0.00 0.00 1.94
763 800 3.763671 AAAAAGGTGCTCCAGCCG 58.236 55.556 7.70 0.00 41.18 5.52
764 801 1.152756 AAAAAGGTGCTCCAGCCGT 60.153 52.632 7.70 0.00 41.18 5.68
765 802 0.755327 AAAAAGGTGCTCCAGCCGTT 60.755 50.000 7.70 0.00 41.18 4.44
766 803 1.172812 AAAAGGTGCTCCAGCCGTTC 61.173 55.000 7.70 0.00 41.18 3.95
767 804 3.553095 AAGGTGCTCCAGCCGTTCC 62.553 63.158 7.70 0.00 41.18 3.62
769 806 4.681978 GTGCTCCAGCCGTTCCGT 62.682 66.667 0.00 0.00 41.18 4.69
770 807 2.992689 TGCTCCAGCCGTTCCGTA 60.993 61.111 0.00 0.00 41.18 4.02
771 808 2.355986 TGCTCCAGCCGTTCCGTAT 61.356 57.895 0.00 0.00 41.18 3.06
772 809 1.153429 GCTCCAGCCGTTCCGTATT 60.153 57.895 0.00 0.00 34.31 1.89
773 810 0.743345 GCTCCAGCCGTTCCGTATTT 60.743 55.000 0.00 0.00 34.31 1.40
774 811 1.734163 CTCCAGCCGTTCCGTATTTT 58.266 50.000 0.00 0.00 0.00 1.82
775 812 2.081462 CTCCAGCCGTTCCGTATTTTT 58.919 47.619 0.00 0.00 0.00 1.94
776 813 3.264104 CTCCAGCCGTTCCGTATTTTTA 58.736 45.455 0.00 0.00 0.00 1.52
777 814 3.264104 TCCAGCCGTTCCGTATTTTTAG 58.736 45.455 0.00 0.00 0.00 1.85
778 815 3.055963 TCCAGCCGTTCCGTATTTTTAGA 60.056 43.478 0.00 0.00 0.00 2.10
779 816 3.308866 CCAGCCGTTCCGTATTTTTAGAG 59.691 47.826 0.00 0.00 0.00 2.43
780 817 3.308866 CAGCCGTTCCGTATTTTTAGAGG 59.691 47.826 0.00 0.00 0.00 3.69
781 818 3.196254 AGCCGTTCCGTATTTTTAGAGGA 59.804 43.478 0.00 0.00 0.00 3.71
782 819 3.308053 GCCGTTCCGTATTTTTAGAGGAC 59.692 47.826 0.00 0.00 0.00 3.85
783 820 4.752146 CCGTTCCGTATTTTTAGAGGACT 58.248 43.478 0.00 0.00 0.00 3.85
784 821 4.802563 CCGTTCCGTATTTTTAGAGGACTC 59.197 45.833 0.00 0.00 0.00 3.36
785 822 4.802563 CGTTCCGTATTTTTAGAGGACTCC 59.197 45.833 0.00 0.00 0.00 3.85
786 823 4.644103 TCCGTATTTTTAGAGGACTCCG 57.356 45.455 0.00 0.00 0.00 4.63
787 824 4.019174 TCCGTATTTTTAGAGGACTCCGT 58.981 43.478 0.00 0.00 0.00 4.69
788 825 5.192927 TCCGTATTTTTAGAGGACTCCGTA 58.807 41.667 0.00 0.00 0.00 4.02
789 826 5.829924 TCCGTATTTTTAGAGGACTCCGTAT 59.170 40.000 0.00 0.00 0.00 3.06
790 827 6.016777 TCCGTATTTTTAGAGGACTCCGTATC 60.017 42.308 0.00 0.00 0.00 2.24
791 828 6.016443 CCGTATTTTTAGAGGACTCCGTATCT 60.016 42.308 0.00 0.00 0.00 1.98
792 829 6.856938 CGTATTTTTAGAGGACTCCGTATCTG 59.143 42.308 0.00 0.00 0.00 2.90
793 830 6.793505 ATTTTTAGAGGACTCCGTATCTGT 57.206 37.500 0.00 0.00 0.00 3.41
794 831 7.893124 ATTTTTAGAGGACTCCGTATCTGTA 57.107 36.000 0.00 0.00 0.00 2.74
795 832 7.893124 TTTTTAGAGGACTCCGTATCTGTAT 57.107 36.000 0.00 0.00 0.00 2.29
796 833 8.985315 TTTTTAGAGGACTCCGTATCTGTATA 57.015 34.615 0.00 0.00 0.00 1.47
797 834 9.584008 TTTTTAGAGGACTCCGTATCTGTATAT 57.416 33.333 0.00 0.00 0.00 0.86
801 838 8.967664 AGAGGACTCCGTATCTGTATATAATC 57.032 38.462 0.00 0.00 0.00 1.75
802 839 8.774183 AGAGGACTCCGTATCTGTATATAATCT 58.226 37.037 0.00 0.00 0.00 2.40
803 840 9.398538 GAGGACTCCGTATCTGTATATAATCTT 57.601 37.037 0.00 0.00 0.00 2.40
804 841 9.756571 AGGACTCCGTATCTGTATATAATCTTT 57.243 33.333 0.00 0.00 0.00 2.52
861 898 3.140325 TGGCTCTTCCTGTAAACCTTG 57.860 47.619 0.00 0.00 35.26 3.61
894 944 5.041940 CCGTCGGAGGAGTTTATTTAGAAG 58.958 45.833 4.91 0.00 0.00 2.85
895 945 5.163581 CCGTCGGAGGAGTTTATTTAGAAGA 60.164 44.000 4.91 0.00 0.00 2.87
896 946 6.327934 CGTCGGAGGAGTTTATTTAGAAGAA 58.672 40.000 0.00 0.00 0.00 2.52
897 947 6.472808 CGTCGGAGGAGTTTATTTAGAAGAAG 59.527 42.308 0.00 0.00 0.00 2.85
948 2924 5.352643 AGTAATTAAGCAAACGTGACACC 57.647 39.130 0.00 0.00 0.00 4.16
1185 3174 2.927856 ACAGACCCGTGCCATGGA 60.928 61.111 18.40 0.00 0.00 3.41
1406 3397 3.773860 TGTTGTTTGTCGATTGCTTGT 57.226 38.095 0.00 0.00 0.00 3.16
1415 3406 1.080569 GATTGCTTGTGGGTTGCGG 60.081 57.895 0.00 0.00 0.00 5.69
1439 3430 3.195825 AGTGAGGGATGGTTCTCGTTTAG 59.804 47.826 0.00 0.00 33.00 1.85
1502 3506 2.417978 CAAGTTGCTTGCTGGTGGA 58.582 52.632 0.00 0.00 34.63 4.02
1503 3507 0.746063 CAAGTTGCTTGCTGGTGGAA 59.254 50.000 0.00 0.00 34.63 3.53
1504 3508 1.136695 CAAGTTGCTTGCTGGTGGAAA 59.863 47.619 0.00 0.00 34.63 3.13
1505 3509 1.708341 AGTTGCTTGCTGGTGGAAAT 58.292 45.000 0.00 0.00 0.00 2.17
1506 3510 1.615392 AGTTGCTTGCTGGTGGAAATC 59.385 47.619 0.00 0.00 0.00 2.17
1507 3511 1.615392 GTTGCTTGCTGGTGGAAATCT 59.385 47.619 0.00 0.00 0.00 2.40
1508 3512 2.819608 GTTGCTTGCTGGTGGAAATCTA 59.180 45.455 0.00 0.00 0.00 1.98
1509 3513 3.370840 TGCTTGCTGGTGGAAATCTAT 57.629 42.857 0.00 0.00 0.00 1.98
1510 3514 4.502105 TGCTTGCTGGTGGAAATCTATA 57.498 40.909 0.00 0.00 0.00 1.31
1511 3515 4.454678 TGCTTGCTGGTGGAAATCTATAG 58.545 43.478 0.00 0.00 0.00 1.31
1512 3516 3.817647 GCTTGCTGGTGGAAATCTATAGG 59.182 47.826 0.00 0.00 0.00 2.57
1513 3517 4.392940 CTTGCTGGTGGAAATCTATAGGG 58.607 47.826 0.00 0.00 0.00 3.53
1514 3518 2.711009 TGCTGGTGGAAATCTATAGGGG 59.289 50.000 0.00 0.00 0.00 4.79
1844 3848 6.427853 GCCATTTAGGAAATTGCAAGAAGTTT 59.572 34.615 4.94 0.00 38.85 2.66
1893 3897 1.372838 CGCCGGCATCCAACAATGTA 61.373 55.000 28.98 0.00 0.00 2.29
2130 4136 2.583143 AGGGTACTGGCTTGTGTTTTC 58.417 47.619 0.00 0.00 0.00 2.29
2264 4270 1.153086 CTCTGCTGCCCCATGTACC 60.153 63.158 0.00 0.00 0.00 3.34
2706 4712 1.221021 GTAGGAGGAACGGCCCAAG 59.779 63.158 0.00 0.00 37.37 3.61
2716 4722 1.923356 ACGGCCCAAGATCACAAATT 58.077 45.000 0.00 0.00 0.00 1.82
2936 4950 1.137086 CCAATATATCTCCGAGGGCCG 59.863 57.143 0.00 0.00 38.18 6.13
3055 5069 9.687210 TCAAATTTGTGAATGAAGAAGATGAAG 57.313 29.630 17.47 0.00 0.00 3.02
3200 5235 8.735315 CAAATGTGTTTCTGGTTGTGGTATATA 58.265 33.333 0.00 0.00 0.00 0.86
3201 5236 7.859325 ATGTGTTTCTGGTTGTGGTATATAC 57.141 36.000 4.14 4.14 0.00 1.47
3553 5591 4.060038 ACGATGAGGATGTATGGTGTTC 57.940 45.455 0.00 0.00 0.00 3.18
3562 5600 7.567250 TGAGGATGTATGGTGTTCTATTTCCTA 59.433 37.037 0.00 0.00 30.29 2.94
3649 5687 7.958583 AGGAGAAAGCTGAGGAGGATAATATAA 59.041 37.037 0.00 0.00 0.00 0.98
3700 5738 7.191551 TCATGTGCAGTATAGTACGTTTCTAC 58.808 38.462 0.00 0.00 0.00 2.59
3740 5779 7.230849 ACTTGATTCATTGTTAATCCTTGCA 57.769 32.000 0.00 0.00 33.28 4.08
4080 6172 6.661304 TTATACTCCCTCCGTTCCTAAATC 57.339 41.667 0.00 0.00 0.00 2.17
4091 6183 7.606839 CCTCCGTTCCTAAATCTAAGTCTTTTT 59.393 37.037 0.00 0.00 0.00 1.94
4121 6213 9.132923 AGATTCCACTATAAAGACTACATTCGA 57.867 33.333 0.00 0.00 0.00 3.71
4302 6397 6.603237 TTTATCGGAAGTCTGTATGCATTG 57.397 37.500 3.54 0.00 0.00 2.82
4303 6398 3.610040 TCGGAAGTCTGTATGCATTGT 57.390 42.857 3.54 0.00 0.00 2.71
4304 6399 4.729227 TCGGAAGTCTGTATGCATTGTA 57.271 40.909 3.54 0.00 0.00 2.41
4305 6400 4.430007 TCGGAAGTCTGTATGCATTGTAC 58.570 43.478 3.54 0.00 0.00 2.90
4306 6401 4.159693 TCGGAAGTCTGTATGCATTGTACT 59.840 41.667 3.54 0.99 0.00 2.73
4307 6402 4.504461 CGGAAGTCTGTATGCATTGTACTC 59.496 45.833 3.54 0.00 0.00 2.59
4308 6403 4.811557 GGAAGTCTGTATGCATTGTACTCC 59.188 45.833 3.54 0.00 0.00 3.85
4309 6404 4.408182 AGTCTGTATGCATTGTACTCCC 57.592 45.455 3.54 0.00 0.00 4.30
4310 6405 4.033709 AGTCTGTATGCATTGTACTCCCT 58.966 43.478 3.54 0.00 0.00 4.20
4311 6406 4.100189 AGTCTGTATGCATTGTACTCCCTC 59.900 45.833 3.54 0.00 0.00 4.30
4312 6407 3.388024 TCTGTATGCATTGTACTCCCTCC 59.612 47.826 3.54 0.00 0.00 4.30
4313 6408 2.102420 TGTATGCATTGTACTCCCTCCG 59.898 50.000 3.54 0.00 0.00 4.63
4314 6409 1.204146 ATGCATTGTACTCCCTCCGT 58.796 50.000 0.00 0.00 0.00 4.69
4315 6410 0.981183 TGCATTGTACTCCCTCCGTT 59.019 50.000 0.00 0.00 0.00 4.44
4316 6411 1.066430 TGCATTGTACTCCCTCCGTTC 60.066 52.381 0.00 0.00 0.00 3.95
4317 6412 1.742750 GCATTGTACTCCCTCCGTTCC 60.743 57.143 0.00 0.00 0.00 3.62
4318 6413 1.831736 CATTGTACTCCCTCCGTTCCT 59.168 52.381 0.00 0.00 0.00 3.36
4319 6414 2.905415 TTGTACTCCCTCCGTTCCTA 57.095 50.000 0.00 0.00 0.00 2.94
4320 6415 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
4321 6416 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
4322 6417 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
4323 6418 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
4324 6419 4.646492 TGTACTCCCTCCGTTCCTAAATAC 59.354 45.833 0.00 0.00 0.00 1.89
4325 6420 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
4326 6421 3.959449 ACTCCCTCCGTTCCTAAATACTC 59.041 47.826 0.00 0.00 0.00 2.59
4327 6422 3.303049 TCCCTCCGTTCCTAAATACTCC 58.697 50.000 0.00 0.00 0.00 3.85
4328 6423 2.367894 CCCTCCGTTCCTAAATACTCCC 59.632 54.545 0.00 0.00 0.00 4.30
4329 6424 3.306613 CCTCCGTTCCTAAATACTCCCT 58.693 50.000 0.00 0.00 0.00 4.20
4330 6425 3.321396 CCTCCGTTCCTAAATACTCCCTC 59.679 52.174 0.00 0.00 0.00 4.30
4331 6426 3.303049 TCCGTTCCTAAATACTCCCTCC 58.697 50.000 0.00 0.00 0.00 4.30
4332 6427 2.035576 CCGTTCCTAAATACTCCCTCCG 59.964 54.545 0.00 0.00 0.00 4.63
4333 6428 2.692041 CGTTCCTAAATACTCCCTCCGT 59.308 50.000 0.00 0.00 0.00 4.69
4334 6429 3.243334 CGTTCCTAAATACTCCCTCCGTC 60.243 52.174 0.00 0.00 0.00 4.79
4335 6430 2.954792 TCCTAAATACTCCCTCCGTCC 58.045 52.381 0.00 0.00 0.00 4.79
4336 6431 1.612463 CCTAAATACTCCCTCCGTCCG 59.388 57.143 0.00 0.00 0.00 4.79
4337 6432 1.612463 CTAAATACTCCCTCCGTCCGG 59.388 57.143 0.00 0.00 0.00 5.14
4338 6433 0.032813 AAATACTCCCTCCGTCCGGA 60.033 55.000 0.00 0.00 42.90 5.14
4339 6434 0.032813 AATACTCCCTCCGTCCGGAA 60.033 55.000 5.23 0.00 44.66 4.30
4340 6435 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
4341 6436 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
4342 6437 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
4343 6438 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
4344 6439 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
4345 6440 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
4346 6441 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
4347 6442 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
4348 6443 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
4349 6444 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
4350 6445 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
4351 6446 3.055675 TCCGTCCGGAAATACTTGTCATT 60.056 43.478 5.23 0.00 42.05 2.57
4352 6447 4.160065 TCCGTCCGGAAATACTTGTCATTA 59.840 41.667 5.23 0.00 42.05 1.90
4353 6448 4.871557 CCGTCCGGAAATACTTGTCATTAA 59.128 41.667 5.23 0.00 37.50 1.40
4354 6449 5.352016 CCGTCCGGAAATACTTGTCATTAAA 59.648 40.000 5.23 0.00 37.50 1.52
4355 6450 6.128227 CCGTCCGGAAATACTTGTCATTAAAA 60.128 38.462 5.23 0.00 37.50 1.52
4356 6451 7.414762 CCGTCCGGAAATACTTGTCATTAAAAT 60.415 37.037 5.23 0.00 37.50 1.82
4357 6452 8.605746 CGTCCGGAAATACTTGTCATTAAAATA 58.394 33.333 5.23 0.00 0.00 1.40
4390 6485 9.845214 AGGGGATGTATCTAGATGTATTTTAGT 57.155 33.333 15.79 0.00 0.00 2.24
4413 6508 8.794335 AGTTCTAGATACATCCCTTTTTGTTC 57.206 34.615 0.00 0.00 0.00 3.18
4414 6509 8.383175 AGTTCTAGATACATCCCTTTTTGTTCA 58.617 33.333 0.00 0.00 0.00 3.18
4415 6510 9.178758 GTTCTAGATACATCCCTTTTTGTTCAT 57.821 33.333 0.00 0.00 0.00 2.57
4416 6511 9.753674 TTCTAGATACATCCCTTTTTGTTCATT 57.246 29.630 0.00 0.00 0.00 2.57
4417 6512 9.753674 TCTAGATACATCCCTTTTTGTTCATTT 57.246 29.630 0.00 0.00 0.00 2.32
4420 6515 8.869109 AGATACATCCCTTTTTGTTCATTTTGA 58.131 29.630 0.00 0.00 0.00 2.69
4421 6516 9.657419 GATACATCCCTTTTTGTTCATTTTGAT 57.343 29.630 0.00 0.00 0.00 2.57
4422 6517 7.733402 ACATCCCTTTTTGTTCATTTTGATG 57.267 32.000 0.00 0.00 33.80 3.07
4423 6518 7.507829 ACATCCCTTTTTGTTCATTTTGATGA 58.492 30.769 0.00 0.00 32.39 2.92
4424 6519 7.442062 ACATCCCTTTTTGTTCATTTTGATGAC 59.558 33.333 0.00 0.00 32.39 3.06
4425 6520 6.882656 TCCCTTTTTGTTCATTTTGATGACA 58.117 32.000 0.00 0.00 0.00 3.58
4426 6521 7.334090 TCCCTTTTTGTTCATTTTGATGACAA 58.666 30.769 0.00 0.00 0.00 3.18
4427 6522 7.495279 TCCCTTTTTGTTCATTTTGATGACAAG 59.505 33.333 0.00 0.00 37.32 3.16
4428 6523 7.280652 CCCTTTTTGTTCATTTTGATGACAAGT 59.719 33.333 0.00 0.00 37.32 3.16
4429 6524 9.311916 CCTTTTTGTTCATTTTGATGACAAGTA 57.688 29.630 0.00 0.00 37.32 2.24
4438 6533 9.474920 TCATTTTGATGACAAGTATTTTTGGAC 57.525 29.630 0.00 0.00 37.32 4.02
4439 6534 7.922505 TTTTGATGACAAGTATTTTTGGACG 57.077 32.000 0.00 0.00 37.32 4.79
4440 6535 5.621197 TGATGACAAGTATTTTTGGACGG 57.379 39.130 0.00 0.00 32.32 4.79
4441 6536 5.309638 TGATGACAAGTATTTTTGGACGGA 58.690 37.500 0.00 0.00 32.32 4.69
4442 6537 5.411361 TGATGACAAGTATTTTTGGACGGAG 59.589 40.000 0.00 0.00 32.32 4.63
4443 6538 4.069304 TGACAAGTATTTTTGGACGGAGG 58.931 43.478 0.00 0.00 32.32 4.30
4444 6539 3.418047 ACAAGTATTTTTGGACGGAGGG 58.582 45.455 0.00 0.00 32.32 4.30
4445 6540 3.073356 ACAAGTATTTTTGGACGGAGGGA 59.927 43.478 0.00 0.00 32.32 4.20
4446 6541 3.629142 AGTATTTTTGGACGGAGGGAG 57.371 47.619 0.00 0.00 0.00 4.30
4447 6542 2.910977 AGTATTTTTGGACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
4448 6543 4.098894 AGTATTTTTGGACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
4449 6544 4.720273 AGTATTTTTGGACGGAGGGAGTAT 59.280 41.667 0.00 0.00 0.00 2.12
4450 6545 5.901276 AGTATTTTTGGACGGAGGGAGTATA 59.099 40.000 0.00 0.00 0.00 1.47
4451 6546 5.703730 ATTTTTGGACGGAGGGAGTATAA 57.296 39.130 0.00 0.00 0.00 0.98
4452 6547 4.748277 TTTTGGACGGAGGGAGTATAAG 57.252 45.455 0.00 0.00 0.00 1.73
4453 6548 3.393426 TTGGACGGAGGGAGTATAAGT 57.607 47.619 0.00 0.00 0.00 2.24
4454 6549 2.941480 TGGACGGAGGGAGTATAAGTC 58.059 52.381 0.00 0.00 0.00 3.01
4455 6550 2.512896 TGGACGGAGGGAGTATAAGTCT 59.487 50.000 0.00 0.00 0.00 3.24
4456 6551 3.053095 TGGACGGAGGGAGTATAAGTCTT 60.053 47.826 0.00 0.00 0.00 3.01
4457 6552 3.959449 GGACGGAGGGAGTATAAGTCTTT 59.041 47.826 0.00 0.00 0.00 2.52
4458 6553 4.202131 GGACGGAGGGAGTATAAGTCTTTG 60.202 50.000 0.00 0.00 0.00 2.77
4459 6554 4.351127 ACGGAGGGAGTATAAGTCTTTGT 58.649 43.478 0.00 0.00 0.00 2.83
4460 6555 5.513233 ACGGAGGGAGTATAAGTCTTTGTA 58.487 41.667 0.00 0.00 0.00 2.41
4461 6556 5.593502 ACGGAGGGAGTATAAGTCTTTGTAG 59.406 44.000 0.00 0.00 0.00 2.74
4462 6557 5.826737 CGGAGGGAGTATAAGTCTTTGTAGA 59.173 44.000 0.00 0.00 0.00 2.59
4463 6558 6.016943 CGGAGGGAGTATAAGTCTTTGTAGAG 60.017 46.154 0.00 0.00 0.00 2.43
4464 6559 7.061688 GGAGGGAGTATAAGTCTTTGTAGAGA 58.938 42.308 0.00 0.00 0.00 3.10
4465 6560 7.726738 GGAGGGAGTATAAGTCTTTGTAGAGAT 59.273 40.741 0.00 0.00 0.00 2.75
4466 6561 9.138596 GAGGGAGTATAAGTCTTTGTAGAGATT 57.861 37.037 0.00 0.00 0.00 2.40
4467 6562 9.495382 AGGGAGTATAAGTCTTTGTAGAGATTT 57.505 33.333 0.00 0.00 31.59 2.17
4468 6563 9.752961 GGGAGTATAAGTCTTTGTAGAGATTTC 57.247 37.037 0.00 0.00 29.76 2.17
4475 6570 7.784470 AGTCTTTGTAGAGATTTCACTAGGT 57.216 36.000 0.00 0.00 0.00 3.08
4476 6571 7.607250 AGTCTTTGTAGAGATTTCACTAGGTG 58.393 38.462 0.00 0.00 34.45 4.00
4477 6572 7.451877 AGTCTTTGTAGAGATTTCACTAGGTGA 59.548 37.037 0.00 0.00 41.09 4.02
4488 6583 5.571784 TTCACTAGGTGAACTACATACGG 57.428 43.478 8.75 0.00 45.88 4.02
4489 6584 4.847198 TCACTAGGTGAACTACATACGGA 58.153 43.478 0.00 0.00 39.78 4.69
4490 6585 4.880120 TCACTAGGTGAACTACATACGGAG 59.120 45.833 0.00 0.00 39.78 4.63
4491 6586 3.631227 ACTAGGTGAACTACATACGGAGC 59.369 47.826 0.00 0.00 0.00 4.70
4492 6587 2.453521 AGGTGAACTACATACGGAGCA 58.546 47.619 0.00 0.00 0.00 4.26
4493 6588 2.829720 AGGTGAACTACATACGGAGCAA 59.170 45.455 0.00 0.00 0.00 3.91
4494 6589 3.259876 AGGTGAACTACATACGGAGCAAA 59.740 43.478 0.00 0.00 0.00 3.68
4495 6590 3.998341 GGTGAACTACATACGGAGCAAAA 59.002 43.478 0.00 0.00 0.00 2.44
4496 6591 4.634443 GGTGAACTACATACGGAGCAAAAT 59.366 41.667 0.00 0.00 0.00 1.82
4497 6592 5.447279 GGTGAACTACATACGGAGCAAAATG 60.447 44.000 0.00 0.00 0.00 2.32
4498 6593 5.350365 GTGAACTACATACGGAGCAAAATGA 59.650 40.000 0.00 0.00 0.00 2.57
4499 6594 5.935206 TGAACTACATACGGAGCAAAATGAA 59.065 36.000 0.00 0.00 0.00 2.57
4500 6595 6.597672 TGAACTACATACGGAGCAAAATGAAT 59.402 34.615 0.00 0.00 0.00 2.57
4501 6596 6.363577 ACTACATACGGAGCAAAATGAATG 57.636 37.500 0.00 0.00 0.00 2.67
4502 6597 6.112734 ACTACATACGGAGCAAAATGAATGA 58.887 36.000 0.00 0.00 0.00 2.57
4503 6598 5.895636 ACATACGGAGCAAAATGAATGAA 57.104 34.783 0.00 0.00 0.00 2.57
4504 6599 6.455360 ACATACGGAGCAAAATGAATGAAT 57.545 33.333 0.00 0.00 0.00 2.57
4505 6600 7.566760 ACATACGGAGCAAAATGAATGAATA 57.433 32.000 0.00 0.00 0.00 1.75
4506 6601 8.169977 ACATACGGAGCAAAATGAATGAATAT 57.830 30.769 0.00 0.00 0.00 1.28
4507 6602 9.283768 ACATACGGAGCAAAATGAATGAATATA 57.716 29.630 0.00 0.00 0.00 0.86
4510 6605 8.856490 ACGGAGCAAAATGAATGAATATAAAC 57.144 30.769 0.00 0.00 0.00 2.01
4511 6606 8.686334 ACGGAGCAAAATGAATGAATATAAACT 58.314 29.630 0.00 0.00 0.00 2.66
4512 6607 9.520204 CGGAGCAAAATGAATGAATATAAACTT 57.480 29.630 0.00 0.00 0.00 2.66
4535 6630 9.944376 ACTTAAAATGCATCTATATACATCCGT 57.056 29.630 0.00 0.00 0.00 4.69
4539 6634 7.953158 AATGCATCTATATACATCCGTATGC 57.047 36.000 0.00 0.00 38.79 3.14
4540 6635 5.519722 TGCATCTATATACATCCGTATGCG 58.480 41.667 0.00 0.00 38.79 4.73
4556 6651 6.764877 CGTATGCGGTTTATAGTGAAATCT 57.235 37.500 0.00 0.00 0.00 2.40
4557 6652 6.808264 CGTATGCGGTTTATAGTGAAATCTC 58.192 40.000 0.00 0.00 0.00 2.75
4558 6653 6.641314 CGTATGCGGTTTATAGTGAAATCTCT 59.359 38.462 0.00 0.00 0.00 3.10
4559 6654 7.806487 CGTATGCGGTTTATAGTGAAATCTCTA 59.194 37.037 0.00 0.00 0.00 2.43
4560 6655 9.640963 GTATGCGGTTTATAGTGAAATCTCTAT 57.359 33.333 9.28 9.28 36.80 1.98
4584 6679 8.919777 ATAAAGATTTATTTAGGAACGGAGGG 57.080 34.615 0.00 0.00 29.40 4.30
4585 6680 6.570654 AAGATTTATTTAGGAACGGAGGGA 57.429 37.500 0.00 0.00 0.00 4.20
4598 6693 5.509332 GGAACGGAGGGAGTACTTATGATTC 60.509 48.000 0.00 0.00 0.00 2.52
4614 6709 9.871238 ACTTATGATTCGAGTGTTTTACAGTAT 57.129 29.630 0.00 0.00 30.64 2.12
4683 6778 5.077564 GTCCATTAACTTTCCCACTTTCCT 58.922 41.667 0.00 0.00 0.00 3.36
4763 6858 4.189188 GCGATGGCTGGCAGCAAG 62.189 66.667 37.49 25.24 44.75 4.01
4865 6961 2.093235 GCTCTTCCCAAGCATGTCTAGT 60.093 50.000 0.00 0.00 39.61 2.57
4894 7017 1.303236 TGCCACAATTAGCAGCCGT 60.303 52.632 0.00 0.00 33.08 5.68
4951 7075 3.935315 TGAGATGACTTTGCTCTTCCAG 58.065 45.455 0.00 0.00 0.00 3.86
5007 7131 6.184789 GGACCAAAGTAAAATGATGAGGGTA 58.815 40.000 0.00 0.00 0.00 3.69
5008 7132 6.318900 GGACCAAAGTAAAATGATGAGGGTAG 59.681 42.308 0.00 0.00 0.00 3.18
5009 7133 6.790319 ACCAAAGTAAAATGATGAGGGTAGT 58.210 36.000 0.00 0.00 0.00 2.73
5049 7175 5.689383 TCATAAGTTTGCAGAACTTGTCC 57.311 39.130 24.73 0.00 40.38 4.02
5061 7187 3.815401 AGAACTTGTCCTCCAAATCAACG 59.185 43.478 0.00 0.00 31.20 4.10
5065 7192 4.827284 ACTTGTCCTCCAAATCAACGAAAT 59.173 37.500 0.00 0.00 31.20 2.17
5088 7215 0.107703 TGTTGCTAGGCGATTCAGGG 60.108 55.000 0.00 0.00 0.00 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 2.741612 CTGGCAGCTCGAATTCTAGAG 58.258 52.381 10.99 8.34 37.54 2.43
40 41 7.166804 GCTTAATTTGCAAGTTTTACGTGAAGA 59.833 33.333 12.75 0.00 28.78 2.87
66 83 7.059945 GTGACGCAATTCTAATGTCTTTTCTTG 59.940 37.037 0.00 0.00 0.00 3.02
67 84 7.078228 GTGACGCAATTCTAATGTCTTTTCTT 58.922 34.615 0.00 0.00 0.00 2.52
75 92 5.238432 TCACTTTGTGACGCAATTCTAATGT 59.762 36.000 1.56 0.00 37.67 2.71
87 104 6.434596 TGGATTGTTATTTCACTTTGTGACG 58.565 36.000 0.00 0.00 42.60 4.35
175 192 4.524802 TGTGATAGGCATTGGGATTTCT 57.475 40.909 0.00 0.00 0.00 2.52
186 203 2.168521 GTCCTGCTACTTGTGATAGGCA 59.831 50.000 0.00 0.00 0.00 4.75
217 234 0.392461 TATGGGAGGTCGTTTGCTGC 60.392 55.000 0.00 0.00 0.00 5.25
219 236 0.252197 GGTATGGGAGGTCGTTTGCT 59.748 55.000 0.00 0.00 0.00 3.91
221 238 0.909623 AGGGTATGGGAGGTCGTTTG 59.090 55.000 0.00 0.00 0.00 2.93
288 305 3.943137 ATCCCTCGTTGCTCCCCCA 62.943 63.158 0.00 0.00 0.00 4.96
311 328 4.454717 CCGCGCAAAGGTAACCGC 62.455 66.667 8.75 0.00 42.71 5.68
377 395 2.027751 GTATCGCGGAGGCCTGTC 59.972 66.667 12.00 0.10 35.02 3.51
414 432 2.577059 GATTCCGTGGCGACTCCA 59.423 61.111 0.00 0.00 44.18 3.86
473 491 2.511600 GACCCGCATTCCACTCCG 60.512 66.667 0.00 0.00 0.00 4.63
539 557 2.225068 ATCGTCATGATCACCGGTTC 57.775 50.000 2.97 0.51 28.49 3.62
549 567 0.030773 GCTCGCCACTATCGTCATGA 59.969 55.000 0.00 0.00 0.00 3.07
591 624 3.223435 GAGCACCACGTCAACGCAC 62.223 63.158 1.81 0.00 44.43 5.34
605 638 1.537397 AGTCCTCCTGGCTTGAGCA 60.537 57.895 5.24 0.00 44.36 4.26
646 679 2.035704 TGTTGCGAGCACCATTCATTTT 59.964 40.909 0.00 0.00 0.00 1.82
662 695 0.240945 CAACCTGGTCCGAATGTTGC 59.759 55.000 0.00 0.00 31.10 4.17
663 696 0.240945 GCAACCTGGTCCGAATGTTG 59.759 55.000 0.00 7.77 39.35 3.33
673 706 0.814010 GTGACACGAAGCAACCTGGT 60.814 55.000 0.00 0.00 0.00 4.00
677 710 0.944386 ATGTGTGACACGAAGCAACC 59.056 50.000 11.51 0.00 37.14 3.77
700 733 9.889128 CCAAAAATATTCCCAAATGATAAGTGT 57.111 29.630 0.00 0.00 0.00 3.55
701 734 9.889128 ACCAAAAATATTCCCAAATGATAAGTG 57.111 29.630 0.00 0.00 0.00 3.16
708 741 9.382275 CCTCTAAACCAAAAATATTCCCAAATG 57.618 33.333 0.00 0.00 0.00 2.32
709 742 8.548025 CCCTCTAAACCAAAAATATTCCCAAAT 58.452 33.333 0.00 0.00 0.00 2.32
746 783 0.755327 AACGGCTGGAGCACCTTTTT 60.755 50.000 0.71 0.00 44.36 1.94
747 784 1.152756 AACGGCTGGAGCACCTTTT 60.153 52.632 0.71 0.00 44.36 2.27
748 785 1.600916 GAACGGCTGGAGCACCTTT 60.601 57.895 0.71 0.00 44.36 3.11
749 786 2.032681 GAACGGCTGGAGCACCTT 59.967 61.111 0.71 0.00 44.36 3.50
750 787 4.021925 GGAACGGCTGGAGCACCT 62.022 66.667 0.71 0.00 44.36 4.00
763 800 4.802563 CGGAGTCCTCTAAAAATACGGAAC 59.197 45.833 7.77 0.00 0.00 3.62
764 801 4.463891 ACGGAGTCCTCTAAAAATACGGAA 59.536 41.667 7.77 0.00 29.74 4.30
765 802 4.019174 ACGGAGTCCTCTAAAAATACGGA 58.981 43.478 7.77 0.00 29.74 4.69
766 803 4.382345 ACGGAGTCCTCTAAAAATACGG 57.618 45.455 7.77 0.00 29.74 4.02
767 804 6.856938 CAGATACGGAGTCCTCTAAAAATACG 59.143 42.308 7.77 0.00 43.93 3.06
768 805 7.714703 ACAGATACGGAGTCCTCTAAAAATAC 58.285 38.462 7.77 0.00 43.93 1.89
769 806 7.893124 ACAGATACGGAGTCCTCTAAAAATA 57.107 36.000 7.77 0.00 43.93 1.40
770 807 6.793505 ACAGATACGGAGTCCTCTAAAAAT 57.206 37.500 7.77 0.00 43.93 1.82
771 808 7.893124 ATACAGATACGGAGTCCTCTAAAAA 57.107 36.000 7.77 0.00 43.93 1.94
776 813 8.774183 AGATTATATACAGATACGGAGTCCTCT 58.226 37.037 7.77 0.07 43.93 3.69
777 814 8.967664 AGATTATATACAGATACGGAGTCCTC 57.032 38.462 7.77 0.00 43.93 3.71
778 815 9.756571 AAAGATTATATACAGATACGGAGTCCT 57.243 33.333 7.77 0.00 43.93 3.85
812 849 9.570488 GGACAGATTATATACGGATACAAGTTC 57.430 37.037 0.00 0.00 0.00 3.01
813 850 9.085645 TGGACAGATTATATACGGATACAAGTT 57.914 33.333 0.00 0.00 0.00 2.66
814 851 8.645814 TGGACAGATTATATACGGATACAAGT 57.354 34.615 0.00 0.00 0.00 3.16
816 853 9.869757 CATTGGACAGATTATATACGGATACAA 57.130 33.333 0.00 0.00 0.00 2.41
817 854 8.474831 CCATTGGACAGATTATATACGGATACA 58.525 37.037 0.00 0.00 0.00 2.29
874 924 7.713734 TCTTCTTCTAAATAAACTCCTCCGA 57.286 36.000 0.00 0.00 0.00 4.55
948 2924 1.743995 CTCGTTTAGTTGGCGGGGG 60.744 63.158 0.00 0.00 0.00 5.40
1185 3174 0.919710 GACTCCCCATAAAGGCCTGT 59.080 55.000 5.69 1.77 35.39 4.00
1192 3181 1.480954 GACGCAGAGACTCCCCATAAA 59.519 52.381 0.00 0.00 0.00 1.40
1245 3234 4.554036 GGCGGGAGAGACCATGGC 62.554 72.222 13.04 4.70 41.20 4.40
1406 3397 2.589157 CCCTCACTACCGCAACCCA 61.589 63.158 0.00 0.00 0.00 4.51
1415 3406 2.100989 ACGAGAACCATCCCTCACTAC 58.899 52.381 0.00 0.00 0.00 2.73
1439 3430 3.887716 AGTGAAATTCATAGGGATGCAGC 59.112 43.478 0.00 0.00 32.62 5.25
1502 3506 5.517299 GGTTGATGGATGCCCCTATAGATTT 60.517 44.000 0.00 0.00 35.38 2.17
1503 3507 4.018050 GGTTGATGGATGCCCCTATAGATT 60.018 45.833 0.00 0.00 35.38 2.40
1504 3508 3.525199 GGTTGATGGATGCCCCTATAGAT 59.475 47.826 0.00 0.00 35.38 1.98
1505 3509 2.912956 GGTTGATGGATGCCCCTATAGA 59.087 50.000 0.00 0.00 35.38 1.98
1506 3510 2.915604 AGGTTGATGGATGCCCCTATAG 59.084 50.000 0.00 0.00 35.38 1.31
1507 3511 3.004126 AGGTTGATGGATGCCCCTATA 57.996 47.619 0.00 0.00 35.38 1.31
1508 3512 1.838611 AGGTTGATGGATGCCCCTAT 58.161 50.000 0.00 0.00 35.38 2.57
1509 3513 1.607225 AAGGTTGATGGATGCCCCTA 58.393 50.000 0.00 0.00 35.38 3.53
1510 3514 0.712380 AAAGGTTGATGGATGCCCCT 59.288 50.000 0.00 0.00 35.38 4.79
1511 3515 1.571955 AAAAGGTTGATGGATGCCCC 58.428 50.000 0.00 0.00 0.00 5.80
1512 3516 2.833943 AGAAAAAGGTTGATGGATGCCC 59.166 45.455 0.00 0.00 0.00 5.36
1513 3517 4.541973 AAGAAAAAGGTTGATGGATGCC 57.458 40.909 0.00 0.00 0.00 4.40
1514 3518 5.990996 TGAAAAGAAAAAGGTTGATGGATGC 59.009 36.000 0.00 0.00 0.00 3.91
1844 3848 7.378181 TCAAGATAGCGATCAATAGCATTGTA 58.622 34.615 9.61 0.00 34.17 2.41
1893 3897 3.584733 AGTTGGGAGCTGAGAAACTTT 57.415 42.857 0.00 0.00 0.00 2.66
1976 3980 5.192927 ACTGTGTAACCATGTTGGGATATG 58.807 41.667 0.00 0.00 43.37 1.78
2130 4136 6.884280 AAGTGGTTTCAGAACAGGAATTAG 57.116 37.500 0.00 0.00 37.51 1.73
2195 4201 8.579850 TTTTGAGACAGGCTTATGATTTATGT 57.420 30.769 0.00 0.00 0.00 2.29
2264 4270 5.794687 TGGTCTCGCTACAACAATATTTG 57.205 39.130 0.00 0.00 0.00 2.32
2398 4404 5.458041 AGCAAAATTGATGTGCTTACAGT 57.542 34.783 0.00 0.00 46.25 3.55
2440 4446 4.065789 GCTACCAAGTTGCTTCTAACACT 58.934 43.478 0.00 0.00 32.12 3.55
2706 4712 8.937634 ATGGCTTTCTTCAATAATTTGTGATC 57.062 30.769 0.00 0.00 34.32 2.92
2716 4722 7.483307 GCATTTCACTATGGCTTTCTTCAATA 58.517 34.615 0.00 0.00 0.00 1.90
2852 4858 4.478206 AACATCATCGGTCAGATCAGTT 57.522 40.909 0.00 0.00 37.52 3.16
2853 4859 5.798125 ATAACATCATCGGTCAGATCAGT 57.202 39.130 0.00 0.00 37.52 3.41
2936 4950 8.281212 AGTGAAATTGAAATGATAGTACCCAC 57.719 34.615 0.00 0.00 0.00 4.61
2996 5010 5.995282 TCGACAAAGAATAGATTGTTGGTGT 59.005 36.000 0.00 0.00 39.73 4.16
3055 5069 4.202050 ACAGAAACAGCTGACAACCAATTC 60.202 41.667 23.35 10.58 39.20 2.17
3340 5375 6.110033 ACCAACCAGGAACAAAAACAATAAC 58.890 36.000 0.00 0.00 41.22 1.89
3562 5600 5.928264 GCACCAAAAGAATTTAATGCTCACT 59.072 36.000 0.00 0.00 37.28 3.41
3667 5705 9.620660 CGTACTATACTGCACATGATATACAAA 57.379 33.333 0.00 0.00 0.00 2.83
3669 5707 8.331730 ACGTACTATACTGCACATGATATACA 57.668 34.615 0.00 0.00 0.00 2.29
3700 5738 8.267620 TGAATCAAGTACCAACATCATGTTAG 57.732 34.615 1.72 0.00 38.77 2.34
4057 6149 6.379579 AGATTTAGGAACGGAGGGAGTATAA 58.620 40.000 0.00 0.00 0.00 0.98
4133 6225 7.903145 TGAGTGAACTTATACTCTAAAAGGCA 58.097 34.615 0.00 0.00 42.86 4.75
4149 6244 2.851195 ACGGAGCAAAATGAGTGAACT 58.149 42.857 0.00 0.00 0.00 3.01
4252 6347 9.823647 TGAAATTTTCTTTTTGTTACATAGGCA 57.176 25.926 10.33 0.00 0.00 4.75
4302 6397 4.892345 AGTATTTAGGAACGGAGGGAGTAC 59.108 45.833 0.00 0.00 0.00 2.73
4303 6398 5.134725 AGTATTTAGGAACGGAGGGAGTA 57.865 43.478 0.00 0.00 0.00 2.59
4304 6399 3.959449 GAGTATTTAGGAACGGAGGGAGT 59.041 47.826 0.00 0.00 0.00 3.85
4305 6400 3.321396 GGAGTATTTAGGAACGGAGGGAG 59.679 52.174 0.00 0.00 0.00 4.30
4306 6401 3.303049 GGAGTATTTAGGAACGGAGGGA 58.697 50.000 0.00 0.00 0.00 4.20
4307 6402 2.367894 GGGAGTATTTAGGAACGGAGGG 59.632 54.545 0.00 0.00 0.00 4.30
4308 6403 3.306613 AGGGAGTATTTAGGAACGGAGG 58.693 50.000 0.00 0.00 0.00 4.30
4309 6404 3.321396 GGAGGGAGTATTTAGGAACGGAG 59.679 52.174 0.00 0.00 0.00 4.63
4310 6405 3.303049 GGAGGGAGTATTTAGGAACGGA 58.697 50.000 0.00 0.00 0.00 4.69
4311 6406 2.035576 CGGAGGGAGTATTTAGGAACGG 59.964 54.545 0.00 0.00 0.00 4.44
4312 6407 2.692041 ACGGAGGGAGTATTTAGGAACG 59.308 50.000 0.00 0.00 0.00 3.95
4313 6408 3.069300 GGACGGAGGGAGTATTTAGGAAC 59.931 52.174 0.00 0.00 0.00 3.62
4314 6409 3.303049 GGACGGAGGGAGTATTTAGGAA 58.697 50.000 0.00 0.00 0.00 3.36
4315 6410 2.750807 CGGACGGAGGGAGTATTTAGGA 60.751 54.545 0.00 0.00 0.00 2.94
4316 6411 1.612463 CGGACGGAGGGAGTATTTAGG 59.388 57.143 0.00 0.00 0.00 2.69
4317 6412 1.612463 CCGGACGGAGGGAGTATTTAG 59.388 57.143 4.40 0.00 37.50 1.85
4318 6413 1.215173 TCCGGACGGAGGGAGTATTTA 59.785 52.381 9.76 0.00 39.76 1.40
4319 6414 0.032813 TCCGGACGGAGGGAGTATTT 60.033 55.000 9.76 0.00 39.76 1.40
4320 6415 0.032813 TTCCGGACGGAGGGAGTATT 60.033 55.000 13.64 0.00 46.06 1.89
4321 6416 0.032813 TTTCCGGACGGAGGGAGTAT 60.033 55.000 13.64 0.00 46.06 2.12
4322 6417 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
4323 6418 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
4324 6419 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
4325 6420 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
4326 6421 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
4327 6422 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
4328 6423 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
4329 6424 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
4330 6425 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
4331 6426 6.411630 TTTAATGACAAGTATTTCCGGACG 57.588 37.500 1.83 0.00 0.00 4.79
4364 6459 9.845214 ACTAAAATACATCTAGATACATCCCCT 57.155 33.333 4.54 0.00 0.00 4.79
4387 6482 9.886132 GAACAAAAAGGGATGTATCTAGAACTA 57.114 33.333 0.00 0.00 0.00 2.24
4388 6483 8.383175 TGAACAAAAAGGGATGTATCTAGAACT 58.617 33.333 0.00 0.00 0.00 3.01
4389 6484 8.561738 TGAACAAAAAGGGATGTATCTAGAAC 57.438 34.615 0.00 0.00 0.00 3.01
4390 6485 9.753674 AATGAACAAAAAGGGATGTATCTAGAA 57.246 29.630 0.00 0.00 0.00 2.10
4391 6486 9.753674 AAATGAACAAAAAGGGATGTATCTAGA 57.246 29.630 0.00 0.00 0.00 2.43
4394 6489 8.869109 TCAAAATGAACAAAAAGGGATGTATCT 58.131 29.630 0.00 0.00 0.00 1.98
4395 6490 9.657419 ATCAAAATGAACAAAAAGGGATGTATC 57.343 29.630 0.00 0.00 0.00 2.24
4396 6491 9.439500 CATCAAAATGAACAAAAAGGGATGTAT 57.561 29.630 0.00 0.00 34.61 2.29
4397 6492 8.646004 TCATCAAAATGAACAAAAAGGGATGTA 58.354 29.630 0.00 0.00 38.97 2.29
4398 6493 7.442062 GTCATCAAAATGAACAAAAAGGGATGT 59.558 33.333 0.00 0.00 43.42 3.06
4399 6494 7.441760 TGTCATCAAAATGAACAAAAAGGGATG 59.558 33.333 0.00 0.00 43.42 3.51
4400 6495 7.507829 TGTCATCAAAATGAACAAAAAGGGAT 58.492 30.769 0.00 0.00 43.42 3.85
4401 6496 6.882656 TGTCATCAAAATGAACAAAAAGGGA 58.117 32.000 0.00 0.00 43.42 4.20
4402 6497 7.280652 ACTTGTCATCAAAATGAACAAAAAGGG 59.719 33.333 0.87 0.00 43.42 3.95
4403 6498 8.200364 ACTTGTCATCAAAATGAACAAAAAGG 57.800 30.769 0.87 0.00 43.42 3.11
4412 6507 9.474920 GTCCAAAAATACTTGTCATCAAAATGA 57.525 29.630 0.00 0.00 39.63 2.57
4413 6508 8.427012 CGTCCAAAAATACTTGTCATCAAAATG 58.573 33.333 0.00 0.00 32.87 2.32
4414 6509 7.598493 CCGTCCAAAAATACTTGTCATCAAAAT 59.402 33.333 0.00 0.00 32.87 1.82
4415 6510 6.920758 CCGTCCAAAAATACTTGTCATCAAAA 59.079 34.615 0.00 0.00 32.87 2.44
4416 6511 6.263392 TCCGTCCAAAAATACTTGTCATCAAA 59.737 34.615 0.00 0.00 32.87 2.69
4417 6512 5.765677 TCCGTCCAAAAATACTTGTCATCAA 59.234 36.000 0.00 0.00 0.00 2.57
4418 6513 5.309638 TCCGTCCAAAAATACTTGTCATCA 58.690 37.500 0.00 0.00 0.00 3.07
4419 6514 5.163754 CCTCCGTCCAAAAATACTTGTCATC 60.164 44.000 0.00 0.00 0.00 2.92
4420 6515 4.700213 CCTCCGTCCAAAAATACTTGTCAT 59.300 41.667 0.00 0.00 0.00 3.06
4421 6516 4.069304 CCTCCGTCCAAAAATACTTGTCA 58.931 43.478 0.00 0.00 0.00 3.58
4422 6517 3.439129 CCCTCCGTCCAAAAATACTTGTC 59.561 47.826 0.00 0.00 0.00 3.18
4423 6518 3.073356 TCCCTCCGTCCAAAAATACTTGT 59.927 43.478 0.00 0.00 0.00 3.16
4424 6519 3.681593 TCCCTCCGTCCAAAAATACTTG 58.318 45.455 0.00 0.00 0.00 3.16
4425 6520 3.329814 ACTCCCTCCGTCCAAAAATACTT 59.670 43.478 0.00 0.00 0.00 2.24
4426 6521 2.910977 ACTCCCTCCGTCCAAAAATACT 59.089 45.455 0.00 0.00 0.00 2.12
4427 6522 3.345508 ACTCCCTCCGTCCAAAAATAC 57.654 47.619 0.00 0.00 0.00 1.89
4428 6523 6.384886 ACTTATACTCCCTCCGTCCAAAAATA 59.615 38.462 0.00 0.00 0.00 1.40
4429 6524 5.191124 ACTTATACTCCCTCCGTCCAAAAAT 59.809 40.000 0.00 0.00 0.00 1.82
4430 6525 4.533311 ACTTATACTCCCTCCGTCCAAAAA 59.467 41.667 0.00 0.00 0.00 1.94
4431 6526 4.098894 ACTTATACTCCCTCCGTCCAAAA 58.901 43.478 0.00 0.00 0.00 2.44
4432 6527 3.703052 GACTTATACTCCCTCCGTCCAAA 59.297 47.826 0.00 0.00 0.00 3.28
4433 6528 3.053095 AGACTTATACTCCCTCCGTCCAA 60.053 47.826 0.00 0.00 0.00 3.53
4434 6529 2.512896 AGACTTATACTCCCTCCGTCCA 59.487 50.000 0.00 0.00 0.00 4.02
4435 6530 3.226682 AGACTTATACTCCCTCCGTCC 57.773 52.381 0.00 0.00 0.00 4.79
4436 6531 4.401837 ACAAAGACTTATACTCCCTCCGTC 59.598 45.833 0.00 0.00 0.00 4.79
4437 6532 4.351127 ACAAAGACTTATACTCCCTCCGT 58.649 43.478 0.00 0.00 0.00 4.69
4438 6533 5.826737 TCTACAAAGACTTATACTCCCTCCG 59.173 44.000 0.00 0.00 0.00 4.63
4439 6534 7.061688 TCTCTACAAAGACTTATACTCCCTCC 58.938 42.308 0.00 0.00 0.00 4.30
4440 6535 8.700439 ATCTCTACAAAGACTTATACTCCCTC 57.300 38.462 0.00 0.00 0.00 4.30
4441 6536 9.495382 AAATCTCTACAAAGACTTATACTCCCT 57.505 33.333 0.00 0.00 0.00 4.20
4442 6537 9.752961 GAAATCTCTACAAAGACTTATACTCCC 57.247 37.037 0.00 0.00 0.00 4.30
4449 6544 9.310449 ACCTAGTGAAATCTCTACAAAGACTTA 57.690 33.333 0.00 0.00 0.00 2.24
4450 6545 8.091449 CACCTAGTGAAATCTCTACAAAGACTT 58.909 37.037 0.00 0.00 35.23 3.01
4451 6546 7.451877 TCACCTAGTGAAATCTCTACAAAGACT 59.548 37.037 0.00 0.00 39.78 3.24
4452 6547 7.603651 TCACCTAGTGAAATCTCTACAAAGAC 58.396 38.462 0.00 0.00 39.78 3.01
4453 6548 7.776618 TCACCTAGTGAAATCTCTACAAAGA 57.223 36.000 0.00 0.00 39.78 2.52
4467 6562 4.847198 TCCGTATGTAGTTCACCTAGTGA 58.153 43.478 0.00 0.00 41.09 3.41
4468 6563 4.497674 GCTCCGTATGTAGTTCACCTAGTG 60.498 50.000 0.00 0.00 34.45 2.74
4469 6564 3.631227 GCTCCGTATGTAGTTCACCTAGT 59.369 47.826 0.00 0.00 0.00 2.57
4470 6565 3.630769 TGCTCCGTATGTAGTTCACCTAG 59.369 47.826 0.00 0.00 0.00 3.02
4471 6566 3.623703 TGCTCCGTATGTAGTTCACCTA 58.376 45.455 0.00 0.00 0.00 3.08
4472 6567 2.453521 TGCTCCGTATGTAGTTCACCT 58.546 47.619 0.00 0.00 0.00 4.00
4473 6568 2.953466 TGCTCCGTATGTAGTTCACC 57.047 50.000 0.00 0.00 0.00 4.02
4474 6569 5.350365 TCATTTTGCTCCGTATGTAGTTCAC 59.650 40.000 0.00 0.00 0.00 3.18
4475 6570 5.483811 TCATTTTGCTCCGTATGTAGTTCA 58.516 37.500 0.00 0.00 0.00 3.18
4476 6571 6.417191 TTCATTTTGCTCCGTATGTAGTTC 57.583 37.500 0.00 0.00 0.00 3.01
4477 6572 6.597672 TCATTCATTTTGCTCCGTATGTAGTT 59.402 34.615 0.00 0.00 0.00 2.24
4478 6573 6.112734 TCATTCATTTTGCTCCGTATGTAGT 58.887 36.000 0.00 0.00 0.00 2.73
4479 6574 6.603237 TCATTCATTTTGCTCCGTATGTAG 57.397 37.500 0.00 0.00 0.00 2.74
4480 6575 6.993786 TTCATTCATTTTGCTCCGTATGTA 57.006 33.333 0.00 0.00 0.00 2.29
4481 6576 5.895636 TTCATTCATTTTGCTCCGTATGT 57.104 34.783 0.00 0.00 0.00 2.29
4484 6579 9.944663 GTTTATATTCATTCATTTTGCTCCGTA 57.055 29.630 0.00 0.00 0.00 4.02
4485 6580 8.686334 AGTTTATATTCATTCATTTTGCTCCGT 58.314 29.630 0.00 0.00 0.00 4.69
4486 6581 9.520204 AAGTTTATATTCATTCATTTTGCTCCG 57.480 29.630 0.00 0.00 0.00 4.63
4509 6604 9.944376 ACGGATGTATATAGATGCATTTTAAGT 57.056 29.630 11.19 0.00 38.38 2.24
4513 6608 8.830580 GCATACGGATGTATATAGATGCATTTT 58.169 33.333 9.90 0.00 38.38 1.82
4514 6609 7.169813 CGCATACGGATGTATATAGATGCATTT 59.830 37.037 9.90 0.00 38.38 2.32
4515 6610 6.642540 CGCATACGGATGTATATAGATGCATT 59.357 38.462 9.90 1.23 38.38 3.56
4516 6611 6.152379 CGCATACGGATGTATATAGATGCAT 58.848 40.000 9.90 0.00 40.68 3.96
4517 6612 5.519722 CGCATACGGATGTATATAGATGCA 58.480 41.667 9.90 0.00 39.28 3.96
4533 6628 6.641314 AGAGATTTCACTATAAACCGCATACG 59.359 38.462 0.00 0.00 39.67 3.06
4534 6629 7.948278 AGAGATTTCACTATAAACCGCATAC 57.052 36.000 0.00 0.00 0.00 2.39
4559 6654 8.720537 TCCCTCCGTTCCTAAATAAATCTTTAT 58.279 33.333 0.00 0.00 34.98 1.40
4560 6655 8.093118 TCCCTCCGTTCCTAAATAAATCTTTA 57.907 34.615 0.00 0.00 0.00 1.85
4561 6656 6.965607 TCCCTCCGTTCCTAAATAAATCTTT 58.034 36.000 0.00 0.00 0.00 2.52
4562 6657 6.158169 ACTCCCTCCGTTCCTAAATAAATCTT 59.842 38.462 0.00 0.00 0.00 2.40
4563 6658 5.666265 ACTCCCTCCGTTCCTAAATAAATCT 59.334 40.000 0.00 0.00 0.00 2.40
4564 6659 5.926663 ACTCCCTCCGTTCCTAAATAAATC 58.073 41.667 0.00 0.00 0.00 2.17
4565 6660 5.970501 ACTCCCTCCGTTCCTAAATAAAT 57.029 39.130 0.00 0.00 0.00 1.40
4566 6661 5.960202 AGTACTCCCTCCGTTCCTAAATAAA 59.040 40.000 0.00 0.00 0.00 1.40
4567 6662 5.522641 AGTACTCCCTCCGTTCCTAAATAA 58.477 41.667 0.00 0.00 0.00 1.40
4568 6663 5.134725 AGTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
4569 6664 3.991683 AGTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
4570 6665 3.463048 AGTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
4571 6666 3.463048 AAGTACTCCCTCCGTTCCTAA 57.537 47.619 0.00 0.00 0.00 2.69
4572 6667 4.166725 TCATAAGTACTCCCTCCGTTCCTA 59.833 45.833 0.00 0.00 0.00 2.94
4573 6668 3.053095 TCATAAGTACTCCCTCCGTTCCT 60.053 47.826 0.00 0.00 0.00 3.36
4574 6669 3.294214 TCATAAGTACTCCCTCCGTTCC 58.706 50.000 0.00 0.00 0.00 3.62
4575 6670 5.530712 GAATCATAAGTACTCCCTCCGTTC 58.469 45.833 0.00 0.00 0.00 3.95
4576 6671 4.037684 CGAATCATAAGTACTCCCTCCGTT 59.962 45.833 0.00 0.00 0.00 4.44
4577 6672 3.568853 CGAATCATAAGTACTCCCTCCGT 59.431 47.826 0.00 0.00 0.00 4.69
4578 6673 3.819337 TCGAATCATAAGTACTCCCTCCG 59.181 47.826 0.00 0.00 0.00 4.63
4579 6674 4.828387 ACTCGAATCATAAGTACTCCCTCC 59.172 45.833 0.00 0.00 0.00 4.30
4580 6675 5.299782 ACACTCGAATCATAAGTACTCCCTC 59.700 44.000 0.00 0.00 0.00 4.30
4581 6676 5.202004 ACACTCGAATCATAAGTACTCCCT 58.798 41.667 0.00 0.00 0.00 4.20
4582 6677 5.517322 ACACTCGAATCATAAGTACTCCC 57.483 43.478 0.00 0.00 0.00 4.30
4583 6678 7.829378 AAAACACTCGAATCATAAGTACTCC 57.171 36.000 0.00 0.00 0.00 3.85
4584 6679 9.350357 TGTAAAACACTCGAATCATAAGTACTC 57.650 33.333 0.00 0.00 0.00 2.59
4585 6680 9.355215 CTGTAAAACACTCGAATCATAAGTACT 57.645 33.333 0.00 0.00 0.00 2.73
4598 6693 6.392354 TCCCACTTATACTGTAAAACACTCG 58.608 40.000 0.00 0.00 0.00 4.18
4614 6709 1.553248 CGAACATCCCACTCCCACTTA 59.447 52.381 0.00 0.00 0.00 2.24
4668 6763 2.373502 CAGGAGAGGAAAGTGGGAAAGT 59.626 50.000 0.00 0.00 0.00 2.66
4683 6778 2.282783 TGCAGCGGCTTACAGGAGA 61.283 57.895 10.92 0.00 41.91 3.71
4761 6856 7.362401 GCAACATCATTTACATTCTCACTCCTT 60.362 37.037 0.00 0.00 0.00 3.36
4763 6858 6.261118 GCAACATCATTTACATTCTCACTCC 58.739 40.000 0.00 0.00 0.00 3.85
4865 6961 4.217550 GCTAATTGTGGCAGTTGGTCTTAA 59.782 41.667 0.00 0.00 0.00 1.85
4927 7051 3.065095 GGAAGAGCAAAGTCATCTCATGC 59.935 47.826 0.00 0.00 36.97 4.06
4951 7075 0.833287 TGGTATCTGAAGCTGGAGCC 59.167 55.000 0.00 0.00 43.38 4.70
4990 7114 8.822805 TGACTTTACTACCCTCATCATTTTACT 58.177 33.333 0.00 0.00 0.00 2.24
5038 7164 4.319766 CGTTGATTTGGAGGACAAGTTCTG 60.320 45.833 0.00 0.00 40.82 3.02
5061 7187 3.552604 TCGCCTAGCAACAACAATTTC 57.447 42.857 0.00 0.00 0.00 2.17
5065 7192 2.483877 CTGAATCGCCTAGCAACAACAA 59.516 45.455 0.00 0.00 0.00 2.83
5075 7202 3.546543 CCGGCCCTGAATCGCCTA 61.547 66.667 0.00 0.00 43.38 3.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.