AutoCloner

Multiple sequence alignment - TraesCS1B01G214400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1B01G214400	chr1B	100.000	4609	0	0	1	4609	389095114	389090506	0.000000e+00	8512
1	TraesCS1B01G214400	chr1B	93.103	377	17	5	4241	4609	389008669	389008294	1.130000e-150	544
2	TraesCS1B01G214400	chr1D	95.172	3459	102	21	913	4323	286754459	286751018	0.000000e+00	5402
3	TraesCS1B01G214400	chr1D	90.372	457	18	11	1	432	487202535	487202990	1.110000e-160	577
4	TraesCS1B01G214400	chr1D	95.868	242	10	0	4368	4609	286751015	286750774	4.320000e-105	392
5	TraesCS1B01G214400	chr1A	93.448	2549	82	25	2118	4609	358178180	358175660	0.000000e+00	3703
6	TraesCS1B01G214400	chr1A	94.310	1283	48	10	859	2120	358179540	358178262	0.000000e+00	1941
7	TraesCS1B01G214400	chr1A	92.041	490	24	10	4129	4609	358152671	358152188	0.000000e+00	675
8	TraesCS1B01G214400	chr1A	83.776	339	32	15	530	858	59693125	59692800	2.700000e-77	300
9	TraesCS1B01G214400	chr5D	89.049	904	43	12	1	858	491663045	491662152	0.000000e+00	1070
10	TraesCS1B01G214400	chr5D	76.642	548	85	30	330	861	26530115	26529595	3.540000e-66	263
11	TraesCS1B01G214400	chr7D	87.514	905	52	15	1	858	133192387	133193277	0.000000e+00	989
12	TraesCS1B01G214400	chr7D	85.127	632	65	11	1	607	594201613	594202240	1.820000e-173	619
13	TraesCS1B01G214400	chr7D	82.857	630	73	18	1	607	594916186	594915569	2.440000e-147	532
14	TraesCS1B01G214400	chr7A	85.434	611	79	8	1	607	687902976	687902372	1.090000e-175	627
15	TraesCS1B01G214400	chr7A	87.416	445	28	13	1	418	555476503	555476946	1.930000e-133	486
16	TraesCS1B01G214400	chr4A	88.286	461	30	9	1	437	18801706	18801246	8.780000e-147	531
17	TraesCS1B01G214400	chr6A	88.220	382	35	8	1	379	171806275	171806649	9.100000e-122	448
18	TraesCS1B01G214400	chr5B	84.884	344	32	11	530	865	560749158	560749489	3.440000e-86	329
19	TraesCS1B01G214400	chr3B	84.884	344	32	12	530	865	561031713	561031382	3.440000e-86	329
20	TraesCS1B01G214400	chr3B	85.163	337	30	11	530	858	173565262	173565586	1.240000e-85	327
21	TraesCS1B01G214400	chr6B	84.615	338	32	13	530	859	489728450	489728125	7.440000e-83	318
22	TraesCS1B01G214400	chr3D	84.570	337	33	12	530	858	487579633	487579958	2.680000e-82	316
23	TraesCS1B01G214400	chr3D	84.273	337	34	13	530	858	487582521	487582846	1.250000e-80	311
24	TraesCS1B01G214400	chr3D	83.036	336	39	13	532	859	349955061	349954736	5.830000e-74	289
25	TraesCS1B01G214400	chrUn	84.320	338	35	12	529	859	62865631	62865305	9.630000e-82	315
26	TraesCS1B01G214400	chr4B	76.817	289	42	16	985	1249	640106789	640106502	6.220000e-29	139
27	TraesCS1B01G214400	chr4B	86.458	96	10	3	476	569	508815489	508815395	8.160000e-18	102
28	TraesCS1B01G214400	chr4B	86.458	96	10	3	476	569	508820586	508820492	8.160000e-18	102

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1B01G214400	chr1B	389090506	389095114	4608	True	8512.0	8512	100.0000	1	4609	1	chr1B.!!$R2	4608
1	TraesCS1B01G214400	chr1D	286750774	286754459	3685	True	2897.0	5402	95.5200	913	4609	2	chr1D.!!$R1	3696
2	TraesCS1B01G214400	chr1A	358175660	358179540	3880	True	2822.0	3703	93.8790	859	4609	2	chr1A.!!$R3	3750
3	TraesCS1B01G214400	chr5D	491662152	491663045	893	True	1070.0	1070	89.0490	1	858	1	chr5D.!!$R2	857
4	TraesCS1B01G214400	chr5D	26529595	26530115	520	True	263.0	263	76.6420	330	861	1	chr5D.!!$R1	531
5	TraesCS1B01G214400	chr7D	133192387	133193277	890	False	989.0	989	87.5140	1	858	1	chr7D.!!$F1	857
6	TraesCS1B01G214400	chr7D	594201613	594202240	627	False	619.0	619	85.1270	1	607	1	chr7D.!!$F2	606
7	TraesCS1B01G214400	chr7D	594915569	594916186	617	True	532.0	532	82.8570	1	607	1	chr7D.!!$R1	606
8	TraesCS1B01G214400	chr7A	687902372	687902976	604	True	627.0	627	85.4340	1	607	1	chr7A.!!$R1	606
9	TraesCS1B01G214400	chr3D	487579633	487582846	3213	False	313.5	316	84.4215	530	858	2	chr3D.!!$F1	328

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
31	32	0.105224	TCGTGGAAGCTTTTGGACGA	59.895	50.0	15.07	15.07	33.72	4.20	F
782	3144	0.248990	CGTCTGATGAGAGGAGCAGC	60.249	60.0	0.00	0.00	36.37	5.25	F
1980	4386	0.313672	GCTGCGAAACAAACCCATCA	59.686	50.0	0.00	0.00	0.00	3.07	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1980	4386	1.339929	GCTCGGTGATGTTTGGGTTTT	59.660	47.619	0.00	0.00	0.00	2.43	R
2358	4848	0.102120	AGCAGCTATCAGTGACGAGC	59.898	55.000	17.44	17.44	35.07	5.03	R
3917	6461	0.389025	GTTCAACTGGGTTGCCCTTG	59.611	55.000	5.73	3.16	45.70	3.61	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
31	32	0.105224	TCGTGGAAGCTTTTGGACGA	59.895	50.000	15.07	15.07	33.72	4.20
42	43	3.674997	CTTTTGGACGATTCCTTCCAGA	58.325	45.455	0.00	0.00	41.09	3.86
273	298	6.238897	CCTGAACAAAAATGCTACAACCAGTA	60.239	38.462	0.00	0.00	0.00	2.74
277	302	8.587952	AACAAAAATGCTACAACCAGTATTTC	57.412	30.769	0.68	0.00	39.13	2.17
295	320	0.472471	TCGAAAGGCTGGAACCAGTT	59.528	50.000	19.97	8.47	45.24	3.16
532	587	0.670546	CCATCGGTGAGCTCGTGTTT	60.671	55.000	9.64	0.00	0.00	2.83
533	588	1.148310	CATCGGTGAGCTCGTGTTTT	58.852	50.000	9.64	0.00	0.00	2.43
534	589	2.333926	CATCGGTGAGCTCGTGTTTTA	58.666	47.619	9.64	0.00	0.00	1.52
544	2903	2.492001	CTCGTGTTTTATTTCGTGGCG	58.508	47.619	0.00	0.00	0.00	5.69
634	2994	2.203070	GGCCATGACTACTGCGGG	60.203	66.667	0.00	0.00	0.00	6.13
635	2995	2.731571	GGCCATGACTACTGCGGGA	61.732	63.158	0.00	0.00	0.00	5.14
647	3007	1.999071	CTGCGGGAGGAAGAGAGACG	61.999	65.000	0.00	0.00	0.00	4.18
669	3029	1.115467	GAGGAGAAGCGAGATTGGGA	58.885	55.000	0.00	0.00	0.00	4.37
694	3054	3.629796	GGAGAGAAACAGAGGAGGGAGAT	60.630	52.174	0.00	0.00	0.00	2.75
708	3068	6.629156	AGGAGGGAGATGATAGATAAGTGTT	58.371	40.000	0.00	0.00	0.00	3.32
764	3125	2.272146	CCATGGGAAGGGGACACG	59.728	66.667	2.85	0.00	0.00	4.49
765	3126	2.602676	CCATGGGAAGGGGACACGT	61.603	63.158	2.85	0.00	0.00	4.49
782	3144	0.248990	CGTCTGATGAGAGGAGCAGC	60.249	60.000	0.00	0.00	36.37	5.25
801	3171	3.983988	CAGCGAGCGTTCAATCTATGTAT	59.016	43.478	0.00	0.00	0.00	2.29
863	3233	2.798145	GCCACAAACGTTTCCCAAAGAG	60.798	50.000	11.37	0.00	0.00	2.85
870	3240	2.812011	ACGTTTCCCAAAGAGATTTCCG	59.188	45.455	0.00	0.00	0.00	4.30
872	3242	3.998341	CGTTTCCCAAAGAGATTTCCGTA	59.002	43.478	0.00	0.00	0.00	4.02
878	3248	6.300703	TCCCAAAGAGATTTCCGTAGAAAAA	58.699	36.000	0.00	0.00	44.91	1.94
925	3295	1.582502	GGAAGAACTAACGCATCGTCG	59.417	52.381	0.00	0.00	39.99	5.12
979	3349	2.969016	CGACAGAGAGCAGCCAGT	59.031	61.111	0.00	0.00	0.00	4.00
1433	3832	1.212751	GTTCGATGGGTGCTTTGGC	59.787	57.895	0.00	0.00	39.26	4.52
1480	3879	8.514330	TGGATTATGTTACCTATTTGTTGGAC	57.486	34.615	0.00	0.00	0.00	4.02
1539	3938	8.934507	AATTACTAATCTTCAGTTCTTCCTCG	57.065	34.615	0.00	0.00	0.00	4.63
1588	3987	5.929415	GGAGCTATAGAACTAATGTGCCTTC	59.071	44.000	3.21	0.00	0.00	3.46
1722	4121	5.466393	CAGGAACCCAAGCAAAAAGTTAATG	59.534	40.000	0.00	0.00	0.00	1.90
1764	4170	5.961395	TTTCTATAACACGATTCGCCTTC	57.039	39.130	5.86	0.00	0.00	3.46
1772	4178	1.094785	CGATTCGCCTTCACCCATTT	58.905	50.000	0.00	0.00	0.00	2.32
1803	4209	3.264450	CCAGGGAACTCAAGTTATCTGGT	59.736	47.826	22.78	0.00	44.36	4.00
1814	4220	5.774690	TCAAGTTATCTGGTCATGCCTTTTT	59.225	36.000	7.54	0.00	38.35	1.94
1916	4322	4.457257	GGTCCAAAAAGATCAGACCTCAAG	59.543	45.833	0.00	0.00	43.04	3.02
1980	4386	0.313672	GCTGCGAAACAAACCCATCA	59.686	50.000	0.00	0.00	0.00	3.07
1991	4397	3.264450	ACAAACCCATCAAAACCCAAACA	59.736	39.130	0.00	0.00	0.00	2.83
1992	4398	4.080072	ACAAACCCATCAAAACCCAAACAT	60.080	37.500	0.00	0.00	0.00	2.71
2050	4456	3.172824	GCTCAGCTAGACGTTTCTGTAC	58.827	50.000	0.00	0.00	32.75	2.90
2051	4457	3.760537	CTCAGCTAGACGTTTCTGTACC	58.239	50.000	0.00	0.00	32.75	3.34
2079	4485	1.934525	TGCTCAAAAACGCGTCTGTTA	59.065	42.857	14.44	0.00	0.00	2.41
2230	4720	2.233654	GCATAGAGCGCAGTCCACG	61.234	63.158	11.47	0.00	0.00	4.94
2247	4737	1.657181	CGGTTTTCACAAGGCACGC	60.657	57.895	0.00	0.00	0.00	5.34
2323	4813	1.134401	GTGCAGCTAGGGTGATTGCTA	60.134	52.381	0.00	0.00	35.85	3.49
2324	4814	1.559219	TGCAGCTAGGGTGATTGCTAA	59.441	47.619	0.00	0.00	35.85	3.09
2358	4848	4.155826	AGTCTGAGATCAAAGAGTCGTCAG	59.844	45.833	0.00	0.00	32.85	3.51
2434	4924	5.108187	ACTGATGATGAGCAAGGTGTAAT	57.892	39.130	0.00	0.00	0.00	1.89
2449	4939	8.190784	GCAAGGTGTAATGTTAGCTTATCAAAT	58.809	33.333	0.00	0.00	33.70	2.32
2615	5116	1.331214	TCCTGAAGCCAAAGCCAAAG	58.669	50.000	0.00	0.00	41.25	2.77
2619	5120	3.126073	CTGAAGCCAAAGCCAAAGAAAC	58.874	45.455	0.00	0.00	41.25	2.78
2643	5144	9.457436	AACTATCGGTACTTATGTTCCATTTTT	57.543	29.630	5.46	0.00	33.84	1.94
2717	5218	0.252239	TGTAGGCAGGAGAGGCTGAA	60.252	55.000	0.00	0.00	44.89	3.02
2794	5296	3.947910	AAGGATTCACAACAATGCCAG	57.052	42.857	0.00	0.00	0.00	4.85
2926	5434	3.318839	TCTTGCATCTGTTTTCCCAGTTG	59.681	43.478	0.00	0.00	35.96	3.16
3101	5616	5.642165	TGAAGTGTCTTAACTACTCCCTCT	58.358	41.667	0.00	0.00	0.00	3.69
3152	5667	4.583907	GGATACTACCCACTTACTCTCCAC	59.416	50.000	0.00	0.00	0.00	4.02
3504	6019	6.702329	ACAAGATTCTTTCATCCGTTAGTCT	58.298	36.000	0.00	0.00	0.00	3.24
3800	6339	8.052141	TGAATGATGGATGTGTGGATACTTTTA	58.948	33.333	0.00	0.00	37.61	1.52
3827	6366	5.296151	TGACTCCTTGATTGTGTCTTCTT	57.704	39.130	0.00	0.00	0.00	2.52
3917	6461	2.309162	AGGAAGAGGTAAAAGAAGGGGC	59.691	50.000	0.00	0.00	0.00	5.80
3918	6462	2.041216	GGAAGAGGTAAAAGAAGGGGCA	59.959	50.000	0.00	0.00	0.00	5.36
3920	6464	3.441500	AGAGGTAAAAGAAGGGGCAAG	57.558	47.619	0.00	0.00	0.00	4.01
3978	6522	0.481128	AAAGGGGACGGGTGTTCAAT	59.519	50.000	0.00	0.00	0.00	2.57
3986	6530	4.761227	GGGACGGGTGTTCAATAAAGTTAA	59.239	41.667	0.00	0.00	0.00	2.01
4127	6672	2.095567	CACCTCTGATTGCACGGAAAAG	60.096	50.000	0.00	0.00	0.00	2.27
4172	6719	5.125100	AGACACAATACAACCTGCAAATG	57.875	39.130	0.00	0.00	0.00	2.32
4201	6748	3.038788	TGATCGTGCTGCAGAGTTTTA	57.961	42.857	20.43	0.00	0.00	1.52
4326	6881	1.442526	GGCAACGATCATCCCAGCAG	61.443	60.000	0.00	0.00	0.00	4.24
4330	6886	1.332889	ACGATCATCCCAGCAGAGCA	61.333	55.000	0.00	0.00	0.00	4.26
4357	6913	1.934463	CGTTGTCAGTGTCACAGCC	59.066	57.895	5.62	0.00	0.00	4.85
4372	6928	3.376918	GCCCCTGCTTCTTGTGCC	61.377	66.667	0.00	0.00	33.53	5.01
4394	6950	1.153745	CCTCAGACCTTCGCTTCGG	60.154	63.158	0.00	0.00	0.00	4.30
4491	7047	2.047560	GTCAGCCCGGTGGTGTAC	60.048	66.667	17.82	12.44	43.10	2.90
4571	7127	1.303888	CCCAGTTGTGGCTCATGCT	60.304	57.895	0.00	0.00	43.44	3.79

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
31	32	5.163205	CCTTTTTGGGTTTTCTGGAAGGAAT	60.163	40.000	0.00	0.00	35.55	3.01
42	43	1.765904	ACCATCGCCTTTTTGGGTTTT	59.234	42.857	0.00	0.00	34.72	2.43
194	197	1.785881	CGATGCTTTTTGCTACGACG	58.214	50.000	0.00	0.00	43.37	5.12
197	200	1.527696	CAGCGATGCTTTTTGCTACG	58.472	50.000	0.00	0.00	43.37	3.51
228	231	2.027192	GGAATGCTACCACAGGAGTTCA	60.027	50.000	0.00	0.00	0.00	3.18
273	298	2.162681	CTGGTTCCAGCCTTTCGAAAT	58.837	47.619	11.70	0.00	0.00	2.17
277	302	0.593128	CAACTGGTTCCAGCCTTTCG	59.407	55.000	17.55	0.00	37.57	3.46
295	320	8.489990	TTCTTTTGCATCTTTTTCATGAAACA	57.510	26.923	20.35	13.29	0.00	2.83
516	571	2.736144	ATAAAACACGAGCTCACCGA	57.264	45.000	15.40	0.00	0.00	4.69
532	587	0.458889	CCTCCGACGCCACGAAATAA	60.459	55.000	0.00	0.00	35.09	1.40
533	588	1.140161	CCTCCGACGCCACGAAATA	59.860	57.895	0.00	0.00	35.09	1.40
534	589	2.125673	CCTCCGACGCCACGAAAT	60.126	61.111	0.00	0.00	35.09	2.17
624	2983	0.331954	TCTCTTCCTCCCGCAGTAGT	59.668	55.000	0.00	0.00	0.00	2.73
627	2986	0.968393	GTCTCTCTTCCTCCCGCAGT	60.968	60.000	0.00	0.00	0.00	4.40
634	2994	1.210967	TCCTCTCCGTCTCTCTTCCTC	59.789	57.143	0.00	0.00	0.00	3.71
635	2995	1.211949	CTCCTCTCCGTCTCTCTTCCT	59.788	57.143	0.00	0.00	0.00	3.36
647	3007	1.068434	CCAATCTCGCTTCTCCTCTCC	59.932	57.143	0.00	0.00	0.00	3.71
669	3029	2.545810	CCTCCTCTGTTTCTCTCCCTT	58.454	52.381	0.00	0.00	0.00	3.95
708	3068	4.079212	CCCCTTCCTTTCTTATCCATCCAA	60.079	45.833	0.00	0.00	0.00	3.53
755	3116	0.039764	TCTCATCAGACGTGTCCCCT	59.960	55.000	0.00	0.00	0.00	4.79
756	3117	0.457851	CTCTCATCAGACGTGTCCCC	59.542	60.000	0.00	0.00	0.00	4.81
757	3118	0.457851	CCTCTCATCAGACGTGTCCC	59.542	60.000	0.00	0.00	0.00	4.46
759	3120	1.202245	GCTCCTCTCATCAGACGTGTC	60.202	57.143	0.00	0.00	0.00	3.67
760	3121	0.814457	GCTCCTCTCATCAGACGTGT	59.186	55.000	0.00	0.00	0.00	4.49
761	3122	0.813821	TGCTCCTCTCATCAGACGTG	59.186	55.000	0.00	0.00	0.00	4.49
762	3123	1.102154	CTGCTCCTCTCATCAGACGT	58.898	55.000	0.00	0.00	0.00	4.34
763	3124	0.248990	GCTGCTCCTCTCATCAGACG	60.249	60.000	0.00	0.00	0.00	4.18
764	3125	0.248990	CGCTGCTCCTCTCATCAGAC	60.249	60.000	0.00	0.00	0.00	3.51
765	3126	0.394899	TCGCTGCTCCTCTCATCAGA	60.395	55.000	0.00	0.00	0.00	3.27
782	3144	4.375405	GCACATACATAGATTGAACGCTCG	60.375	45.833	0.00	0.00	0.00	5.03
878	3248	7.575499	TCCCTTTTATCTCTTTTCCTCTCTT	57.425	36.000	0.00	0.00	0.00	2.85
880	3250	7.338196	CCTTTCCCTTTTATCTCTTTTCCTCTC	59.662	40.741	0.00	0.00	0.00	3.20
882	3252	7.175797	TCCTTTCCCTTTTATCTCTTTTCCTC	58.824	38.462	0.00	0.00	0.00	3.71
883	3253	7.103745	TCCTTTCCCTTTTATCTCTTTTCCT	57.896	36.000	0.00	0.00	0.00	3.36
884	3254	7.670140	TCTTCCTTTCCCTTTTATCTCTTTTCC	59.330	37.037	0.00	0.00	0.00	3.13
885	3255	8.637196	TCTTCCTTTCCCTTTTATCTCTTTTC	57.363	34.615	0.00	0.00	0.00	2.29
886	3256	8.861086	GTTCTTCCTTTCCCTTTTATCTCTTTT	58.139	33.333	0.00	0.00	0.00	2.27
932	3302	1.029681	GGTTTGGGTTTCGCAGTCTT	58.970	50.000	0.00	0.00	0.00	3.01
938	3308	1.529713	TCTGGGGTTTGGGTTTCGC	60.530	57.895	0.00	0.00	0.00	4.70
1348	3747	4.709397	AGAAACCCTCAATTTTCACACACA	59.291	37.500	0.00	0.00	34.68	3.72
1433	3832	5.512060	CCATAGATGAACCACCAGACATAGG	60.512	48.000	0.00	0.00	0.00	2.57
1480	3879	5.359194	ACATCACAGTTCCTAATACCCAG	57.641	43.478	0.00	0.00	0.00	4.45
1539	3938	3.256558	GTTGGGGTAACAGATACACGAC	58.743	50.000	0.00	0.00	38.93	4.34
1588	3987	3.743911	TGTTGTACGCAAAGTATGGACAG	59.256	43.478	0.00	0.00	37.69	3.51
1722	4121	6.633856	AGAAAAGTATCATGTGGCCAAAATC	58.366	36.000	7.24	0.00	0.00	2.17
1758	4164	1.545582	ACATCAAAATGGGTGAAGGCG	59.454	47.619	0.00	0.00	37.19	5.52
1764	4170	2.231964	CCTGGTCACATCAAAATGGGTG	59.768	50.000	0.00	0.00	37.57	4.61
1772	4178	2.054021	TGAGTTCCCTGGTCACATCAA	58.946	47.619	0.00	0.00	0.00	2.57
1980	4386	1.339929	GCTCGGTGATGTTTGGGTTTT	59.660	47.619	0.00	0.00	0.00	2.43
1991	4397	6.640518	TGTTTATCTTCTAAAGCTCGGTGAT	58.359	36.000	0.00	0.00	0.00	3.06
1992	4398	6.032956	TGTTTATCTTCTAAAGCTCGGTGA	57.967	37.500	0.00	0.00	0.00	4.02
2050	4456	1.788308	CGTTTTTGAGCAATGCACAGG	59.212	47.619	8.35	0.00	30.09	4.00
2051	4457	1.190763	GCGTTTTTGAGCAATGCACAG	59.809	47.619	8.35	0.00	36.35	3.66
2079	4485	5.163519	GCAGTTGGCACATATTAAGGAACAT	60.164	40.000	0.00	0.00	43.97	2.71
2196	4686	5.674820	GCTCTATGCCTCTTTTGTAAAGTGC	60.675	44.000	0.00	0.00	35.15	4.40
2228	4718	1.725066	CGTGCCTTGTGAAAACCGT	59.275	52.632	0.00	0.00	0.00	4.83
2230	4720	1.299850	GGCGTGCCTTGTGAAAACC	60.300	57.895	2.98	0.00	0.00	3.27
2247	4737	2.972505	ACCACTTCTTGCGCACGG	60.973	61.111	11.12	6.37	0.00	4.94
2255	4745	2.146342	CGCACAAGATCACCACTTCTT	58.854	47.619	0.00	0.00	32.48	2.52
2287	4777	0.950555	GCACATTCTGGTCTCACGCA	60.951	55.000	0.00	0.00	0.00	5.24
2323	4813	4.222366	TGATCTCAGACTCTCAGTGCAATT	59.778	41.667	0.00	0.00	0.00	2.32
2324	4814	3.768215	TGATCTCAGACTCTCAGTGCAAT	59.232	43.478	0.00	0.00	0.00	3.56
2358	4848	0.102120	AGCAGCTATCAGTGACGAGC	59.898	55.000	17.44	17.44	35.07	5.03
2449	4939	2.553028	GGACTCTCATGGCCAAAACTGA	60.553	50.000	10.96	8.27	0.00	3.41
2592	5093	1.133513	TGGCTTTGGCTTCAGGAAAGA	60.134	47.619	0.00	0.00	37.12	2.52
2717	5218	2.224066	GGCATCTGCTAACAGGTCGTAT	60.224	50.000	1.70	0.00	44.59	3.06
2794	5296	3.988379	TCCAACAACTTTGCATGTCTC	57.012	42.857	0.00	0.00	0.00	3.36
2926	5434	7.792374	ATTCACCATAACAGTCATATCACAC	57.208	36.000	0.00	0.00	0.00	3.82
2966	5474	9.734620	CATGACAAAACAAGAAAGAGAAATACA	57.265	29.630	0.00	0.00	0.00	2.29
3101	5616	2.095110	CCAATCAGTCTGCGCAAATGAA	60.095	45.455	20.44	5.57	0.00	2.57
3152	5667	2.691011	GCTAGGGTAGTCCTCACTGAAG	59.309	54.545	0.00	0.00	44.06	3.02
3288	5803	7.151976	GTGTGCCATTTCAATAAAACCTAAGT	58.848	34.615	0.00	0.00	0.00	2.24
3504	6019	7.943079	ACAATGTGAATGGATGATACTGAAA	57.057	32.000	0.00	0.00	0.00	2.69
3800	6339	5.440610	AGACACAATCAAGGAGTCAAGTTT	58.559	37.500	0.00	0.00	0.00	2.66
3914	6458	4.621087	ACTGGGTTGCCCTTGCCC	62.621	66.667	5.73	0.00	45.70	5.36
3917	6461	0.389025	GTTCAACTGGGTTGCCCTTG	59.611	55.000	5.73	3.16	45.70	3.61
3918	6462	0.759060	GGTTCAACTGGGTTGCCCTT	60.759	55.000	5.73	0.00	45.70	3.95
3920	6464	2.207229	GGGTTCAACTGGGTTGCCC	61.207	63.158	9.24	9.24	42.55	5.36
3978	6522	7.778083	TCGCCTACAGAGAATCATTAACTTTA	58.222	34.615	0.00	0.00	37.82	1.85
3986	6530	5.543507	AGAAATCGCCTACAGAGAATCAT	57.456	39.130	0.00	0.00	37.82	2.45
4127	6672	9.888878	GTCTAAAAACACCCTAGTTCAATTAAC	57.111	33.333	0.00	0.00	38.46	2.01
4152	6699	4.935352	ACATTTGCAGGTTGTATTGTGT	57.065	36.364	0.00	0.00	0.00	3.72
4172	6719	1.453148	GCAGCACGATCAAAGCAAAAC	59.547	47.619	0.00	0.00	0.00	2.43
4201	6748	0.879090	TGACGCACGACTGATAGTGT	59.121	50.000	0.00	0.00	40.26	3.55
4357	6913	2.281761	ACGGCACAAGAAGCAGGG	60.282	61.111	0.00	0.00	0.00	4.45
4368	6924	3.537206	AAGGTCTGAGGCACGGCAC	62.537	63.158	0.00	0.00	0.00	5.01
4372	6928	2.771763	AAGCGAAGGTCTGAGGCACG	62.772	60.000	0.00	0.00	37.06	5.34
4394	6950	1.202188	GCGCCAACTTCAAATAGGAGC	60.202	52.381	0.00	0.00	37.96	4.70

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.