Multiple sequence alignment - TraesCS1B01G213800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G213800 chr1B 100.000 4035 0 0 1 4035 388147776 388143742 0.000000e+00 7452.0
1 TraesCS1B01G213800 chr1B 96.831 284 8 1 1932 2215 561748280 561748562 1.310000e-129 473.0
2 TraesCS1B01G213800 chr1B 80.720 389 71 4 207 591 550630467 550630079 2.360000e-77 300.0
3 TraesCS1B01G213800 chr1B 78.960 404 76 8 163 562 95012240 95011842 2.390000e-67 267.0
4 TraesCS1B01G213800 chr1D 97.705 1525 31 2 2514 4035 285555122 285553599 0.000000e+00 2619.0
5 TraesCS1B01G213800 chr1D 91.264 1282 91 9 1 1278 285557316 285556052 0.000000e+00 1727.0
6 TraesCS1B01G213800 chr1D 96.009 426 12 2 1514 1934 285555736 285555311 0.000000e+00 688.0
7 TraesCS1B01G213800 chr1D 94.323 229 11 1 1286 1512 285556003 285555775 2.310000e-92 350.0
8 TraesCS1B01G213800 chr1D 96.000 200 6 2 2204 2403 285555316 285555119 1.400000e-84 324.0
9 TraesCS1B01G213800 chr1A 90.007 1531 124 14 2519 4035 357121852 357120337 0.000000e+00 1953.0
10 TraesCS1B01G213800 chr1A 90.921 771 34 22 771 1512 357124117 357123354 0.000000e+00 1003.0
11 TraesCS1B01G213800 chr1A 88.485 330 26 8 1573 1901 357123229 357122911 4.890000e-104 388.0
12 TraesCS1B01G213800 chr1A 86.986 146 14 4 2204 2349 357122029 357121889 4.170000e-35 159.0
13 TraesCS1B01G213800 chr1A 96.970 33 1 0 2368 2400 357121886 357121854 5.630000e-04 56.5
14 TraesCS1B01G213800 chr7B 98.889 270 3 0 1937 2206 283010821 283010552 2.180000e-132 483.0
15 TraesCS1B01G213800 chr7B 89.683 126 13 0 1317 1442 27647760 27647885 1.160000e-35 161.0
16 TraesCS1B01G213800 chr7B 87.302 126 16 0 1317 1442 603522788 603522663 1.170000e-30 145.0
17 TraesCS1B01G213800 chr7A 97.500 280 7 0 1931 2210 610710717 610710438 2.820000e-131 479.0
18 TraesCS1B01G213800 chr6B 96.259 294 8 3 1921 2213 143176395 143176104 2.820000e-131 479.0
19 TraesCS1B01G213800 chr2A 97.834 277 6 0 1930 2206 70704024 70704300 2.820000e-131 479.0
20 TraesCS1B01G213800 chr2A 89.552 134 9 5 2388 2517 718227911 718227779 8.970000e-37 165.0
21 TraesCS1B01G213800 chr6A 97.491 279 7 0 1932 2210 38758093 38757815 1.010000e-130 477.0
22 TraesCS1B01G213800 chr6A 83.621 116 18 1 9 123 498861643 498861758 1.530000e-19 108.0
23 TraesCS1B01G213800 chr5B 97.173 283 7 1 1931 2213 112364307 112364588 1.010000e-130 477.0
24 TraesCS1B01G213800 chr5B 81.062 433 75 6 163 591 678042837 678043266 5.000000e-89 339.0
25 TraesCS1B01G213800 chr5B 94.262 122 6 1 2401 2521 705070228 705070349 6.890000e-43 185.0
26 TraesCS1B01G213800 chr5B 91.667 120 7 3 2402 2519 38365124 38365242 3.230000e-36 163.0
27 TraesCS1B01G213800 chr4B 95.578 294 10 3 1921 2213 42365687 42365396 6.110000e-128 468.0
28 TraesCS1B01G213800 chr4B 91.057 123 7 4 2398 2518 322771427 322771547 3.230000e-36 163.0
29 TraesCS1B01G213800 chr3B 94.118 306 14 4 1930 2232 175672969 175672665 2.840000e-126 462.0
30 TraesCS1B01G213800 chr3B 81.903 431 68 7 163 591 531792445 531792023 4.960000e-94 355.0
31 TraesCS1B01G213800 chr3B 94.068 118 4 3 2403 2518 309414739 309414855 4.140000e-40 176.0
32 TraesCS1B01G213800 chr3B 89.313 131 9 5 2391 2518 809593087 809593215 4.170000e-35 159.0
33 TraesCS1B01G213800 chr3B 90.000 110 11 0 1328 1437 775129794 775129685 4.200000e-30 143.0
34 TraesCS1B01G213800 chr3D 84.367 371 55 3 163 532 382501373 382501005 1.070000e-95 361.0
35 TraesCS1B01G213800 chr3D 81.867 375 57 11 169 537 437737241 437737610 5.070000e-79 305.0
36 TraesCS1B01G213800 chr3D 89.076 119 9 4 3 119 1305367 1305483 1.170000e-30 145.0
37 TraesCS1B01G213800 chr3A 80.047 426 73 9 172 590 225446748 225446328 5.070000e-79 305.0
38 TraesCS1B01G213800 chr7D 80.102 392 69 8 163 550 2627331 2626945 2.370000e-72 283.0
39 TraesCS1B01G213800 chr7D 91.270 126 8 3 2394 2517 4241826 4241702 6.940000e-38 169.0
40 TraesCS1B01G213800 chr4D 91.736 121 7 3 2402 2520 400680682 400680563 8.970000e-37 165.0
41 TraesCS1B01G213800 chr2B 89.313 131 8 4 2392 2519 444543976 444544103 4.170000e-35 159.0
42 TraesCS1B01G213800 chr5D 90.588 85 8 0 1358 1442 393442205 393442121 3.300000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G213800 chr1B 388143742 388147776 4034 True 7452.0 7452 100.0000 1 4035 1 chr1B.!!$R2 4034
1 TraesCS1B01G213800 chr1D 285553599 285557316 3717 True 1141.6 2619 95.0602 1 4035 5 chr1D.!!$R1 4034
2 TraesCS1B01G213800 chr1A 357120337 357124117 3780 True 711.9 1953 90.6738 771 4035 5 chr1A.!!$R1 3264

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
337 339 0.034089 GGGGTGCAGATTGCCTAAGT 60.034 55.0 0.00 0.00 44.23 2.24 F
582 584 0.036164 ATGCCACCTCTTTACGTGCA 59.964 50.0 0.00 0.00 0.00 4.57 F
734 738 0.389025 ACGACTGATGGCGCATATCA 59.611 50.0 20.74 20.74 33.76 2.15 F
1495 1550 1.093159 GGATCAGGTCAGCAAAGCAG 58.907 55.0 0.00 0.00 0.00 4.24 F
1953 2107 0.035056 GTCTGGTCACAATGGGGAGG 60.035 60.0 0.00 0.00 0.00 4.30 F
1954 2108 0.178876 TCTGGTCACAATGGGGAGGA 60.179 55.0 0.00 0.00 0.00 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1934 2088 0.035056 CCTCCCCATTGTGACCAGAC 60.035 60.000 0.0 0.0 0.00 3.51 R
1935 2089 0.178876 TCCTCCCCATTGTGACCAGA 60.179 55.000 0.0 0.0 0.00 3.86 R
1937 2091 0.404040 GTTCCTCCCCATTGTGACCA 59.596 55.000 0.0 0.0 0.00 4.02 R
2670 3394 1.068474 ACACGAAGTATGCAGCGAAC 58.932 50.000 0.0 0.0 41.61 3.95 R
2965 3689 2.727544 GCGAGGCAAACAAAGGCA 59.272 55.556 0.0 0.0 0.00 4.75 R
3464 4197 2.740447 GGTAAACACCGAGCCAACTTAG 59.260 50.000 0.0 0.0 0.00 2.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 7.357303 GCTACTTTTGTTAGGTTTTCGATTCA 58.643 34.615 0.00 0.00 0.00 2.57
43 44 7.519032 TTTCGATTCAGTTTCCCTTACAAAT 57.481 32.000 0.00 0.00 0.00 2.32
46 47 6.712998 TCGATTCAGTTTCCCTTACAAATTGA 59.287 34.615 0.00 0.00 30.18 2.57
54 55 9.362151 AGTTTCCCTTACAAATTGAATCAACTA 57.638 29.630 0.00 0.00 0.00 2.24
158 159 6.237942 CGATCTATTGTTGACTCAATGGTGTC 60.238 42.308 0.00 0.00 38.32 3.67
161 162 2.849942 TGTTGACTCAATGGTGTCTGG 58.150 47.619 4.04 0.00 38.15 3.86
168 170 4.277476 ACTCAATGGTGTCTGGTTTTTCA 58.723 39.130 0.00 0.00 0.00 2.69
183 185 5.423610 TGGTTTTTCAAAAAGGAGGATGACA 59.576 36.000 0.00 0.00 0.00 3.58
187 189 2.171003 CAAAAAGGAGGATGACACCCC 58.829 52.381 0.00 0.00 0.00 4.95
189 191 1.562672 AAAGGAGGATGACACCCCGG 61.563 60.000 0.00 0.00 0.00 5.73
190 192 2.687566 GGAGGATGACACCCCGGT 60.688 66.667 0.00 0.00 0.00 5.28
204 206 2.202987 CGGTCTCTGCATCAGGGC 60.203 66.667 0.00 0.00 30.92 5.19
215 217 1.897137 ATCAGGGCGATGCATGCAG 60.897 57.895 26.69 14.50 31.20 4.41
235 237 8.971321 CATGCAGCCATTTTATTAACTATTCAC 58.029 33.333 0.00 0.00 0.00 3.18
237 239 7.341769 TGCAGCCATTTTATTAACTATTCACCT 59.658 33.333 0.00 0.00 0.00 4.00
282 284 4.851639 ATAAGTCTGAAGCCACCATCTT 57.148 40.909 0.00 0.00 0.00 2.40
284 286 1.980765 AGTCTGAAGCCACCATCTTGA 59.019 47.619 0.00 0.00 0.00 3.02
287 289 2.106338 TCTGAAGCCACCATCTTGACAA 59.894 45.455 0.00 0.00 0.00 3.18
292 294 1.474077 GCCACCATCTTGACAACATCC 59.526 52.381 0.00 0.00 0.00 3.51
301 303 2.363788 TGACAACATCCGTGCTACTC 57.636 50.000 0.00 0.00 0.00 2.59
309 311 3.118261 ACATCCGTGCTACTCCAATCAAT 60.118 43.478 0.00 0.00 0.00 2.57
320 322 7.068593 TGCTACTCCAATCAATTTGATTAAGGG 59.931 37.037 21.11 18.15 44.60 3.95
331 333 2.378038 TGATTAAGGGGTGCAGATTGC 58.622 47.619 0.00 0.00 45.29 3.56
334 336 1.590591 TAAGGGGTGCAGATTGCCTA 58.409 50.000 0.00 0.00 44.23 3.93
337 339 0.034089 GGGGTGCAGATTGCCTAAGT 60.034 55.000 0.00 0.00 44.23 2.24
350 352 1.344763 GCCTAAGTCGCATACCCAGAT 59.655 52.381 0.00 0.00 0.00 2.90
355 357 1.683917 AGTCGCATACCCAGATCTCAC 59.316 52.381 0.00 0.00 0.00 3.51
360 362 2.092968 GCATACCCAGATCTCACACCAA 60.093 50.000 0.00 0.00 0.00 3.67
371 373 1.608590 CTCACACCAAAGCCGAACATT 59.391 47.619 0.00 0.00 0.00 2.71
379 381 2.629639 AAGCCGAACATTTAAAGCCG 57.370 45.000 0.00 0.00 0.00 5.52
412 414 0.250727 AACCACATTGTCGGGTCTGG 60.251 55.000 0.00 0.00 32.67 3.86
413 415 1.125093 ACCACATTGTCGGGTCTGGA 61.125 55.000 9.22 0.00 0.00 3.86
424 426 2.357517 GTCTGGAGCACACACCGG 60.358 66.667 0.00 0.00 34.41 5.28
429 431 3.936203 GAGCACACACCGGTCCCA 61.936 66.667 2.59 0.00 0.00 4.37
430 432 3.249189 AGCACACACCGGTCCCAT 61.249 61.111 2.59 0.00 0.00 4.00
434 436 2.045045 CACACCGGTCCCATGCAT 60.045 61.111 2.59 0.00 0.00 3.96
440 442 0.394216 CCGGTCCCATGCATTCTCAA 60.394 55.000 0.00 0.00 0.00 3.02
441 443 0.734889 CGGTCCCATGCATTCTCAAC 59.265 55.000 0.00 0.00 0.00 3.18
442 444 1.679944 CGGTCCCATGCATTCTCAACT 60.680 52.381 0.00 0.00 0.00 3.16
443 445 1.747355 GGTCCCATGCATTCTCAACTG 59.253 52.381 0.00 0.00 0.00 3.16
454 456 0.392706 TCTCAACTGTCACCGCATGT 59.607 50.000 0.00 0.00 0.00 3.21
458 460 0.890542 AACTGTCACCGCATGTGCAT 60.891 50.000 0.00 0.00 45.03 3.96
469 471 0.661552 CATGTGCATGCTGTAGAGCC 59.338 55.000 20.33 0.00 45.57 4.70
488 490 2.203070 GCCGCCATCGTCTTCCAT 60.203 61.111 0.00 0.00 0.00 3.41
493 495 1.942657 CGCCATCGTCTTCCATCAATT 59.057 47.619 0.00 0.00 0.00 2.32
497 499 4.037208 GCCATCGTCTTCCATCAATTCATT 59.963 41.667 0.00 0.00 0.00 2.57
498 500 5.755813 CCATCGTCTTCCATCAATTCATTC 58.244 41.667 0.00 0.00 0.00 2.67
512 514 5.188555 TCAATTCATTCTCAGAGCAGGTACT 59.811 40.000 0.00 0.00 43.88 2.73
528 530 1.661112 GTACTGAGGCATCGACTTTGC 59.339 52.381 0.73 0.73 39.41 3.68
542 544 3.063704 TTGCCAGGCTGCAATCGG 61.064 61.111 14.15 0.00 45.77 4.18
564 566 2.112198 CACCACGGCGCCATACAAT 61.112 57.895 28.98 2.75 0.00 2.71
573 575 0.464373 CGCCATACAATGCCACCTCT 60.464 55.000 0.00 0.00 0.00 3.69
574 576 1.767759 GCCATACAATGCCACCTCTT 58.232 50.000 0.00 0.00 0.00 2.85
579 581 2.561478 ACAATGCCACCTCTTTACGT 57.439 45.000 0.00 0.00 0.00 3.57
581 583 1.135689 CAATGCCACCTCTTTACGTGC 60.136 52.381 0.00 0.00 0.00 5.34
582 584 0.036164 ATGCCACCTCTTTACGTGCA 59.964 50.000 0.00 0.00 0.00 4.57
589 591 2.236146 ACCTCTTTACGTGCATCCATCA 59.764 45.455 0.00 0.00 0.00 3.07
598 600 2.615447 CGTGCATCCATCATAAAGTGCT 59.385 45.455 0.00 0.00 33.95 4.40
606 608 5.748402 TCCATCATAAAGTGCTGATGTTCT 58.252 37.500 9.66 0.00 44.66 3.01
653 657 2.878406 GCATGTGTGTGAAGTTGTAGGT 59.122 45.455 0.00 0.00 0.00 3.08
657 661 4.114073 TGTGTGTGAAGTTGTAGGTAACG 58.886 43.478 0.00 0.00 46.39 3.18
678 682 4.143115 ACGCATTATGACTTGTTTGTCTCG 60.143 41.667 0.00 0.00 37.79 4.04
712 716 7.967854 CGGCAACATTTTATACATGTATATGGG 59.032 37.037 23.01 16.63 38.66 4.00
713 717 7.759433 GGCAACATTTTATACATGTATATGGGC 59.241 37.037 23.01 22.61 38.66 5.36
733 737 0.786581 CACGACTGATGGCGCATATC 59.213 55.000 10.83 13.31 0.00 1.63
734 738 0.389025 ACGACTGATGGCGCATATCA 59.611 50.000 20.74 20.74 33.76 2.15
737 741 2.922779 CTGATGGCGCATATCAGCA 58.077 52.632 29.00 18.04 43.38 4.41
738 742 1.450025 CTGATGGCGCATATCAGCAT 58.550 50.000 29.00 14.88 43.38 3.79
739 743 2.624636 CTGATGGCGCATATCAGCATA 58.375 47.619 29.00 9.65 43.38 3.14
740 744 3.203716 CTGATGGCGCATATCAGCATAT 58.796 45.455 29.00 0.00 43.38 1.78
866 870 2.747989 CTCCTCGCCTCGCTGTATAATA 59.252 50.000 0.00 0.00 0.00 0.98
901 905 2.224784 GCACCAAACCGATCGTTTAACT 59.775 45.455 15.09 0.00 42.98 2.24
1278 1288 2.174107 CATTGCCTGTGTCGTGCG 59.826 61.111 0.00 0.00 0.00 5.34
1279 1289 3.726517 ATTGCCTGTGTCGTGCGC 61.727 61.111 0.00 0.00 0.00 6.09
1305 1358 3.172575 CGTGGCGTGTGAGCGTAG 61.173 66.667 0.00 0.00 38.18 3.51
1315 1368 3.635331 GTGTGAGCGTAGTCAACTAACA 58.365 45.455 0.00 0.00 0.00 2.41
1332 1387 1.301423 ACATTTGGTGCGTACGTGTT 58.699 45.000 17.90 0.00 0.00 3.32
1362 1417 1.585521 CGTCAGGTACATCGTCGCC 60.586 63.158 0.00 0.00 0.00 5.54
1365 1420 1.585521 CAGGTACATCGTCGCCGTC 60.586 63.158 0.00 0.00 35.01 4.79
1495 1550 1.093159 GGATCAGGTCAGCAAAGCAG 58.907 55.000 0.00 0.00 0.00 4.24
1499 1554 1.152368 AGGTCAGCAAAGCAGCCTT 59.848 52.632 0.00 0.00 34.23 4.35
1536 1632 3.304928 CCTTTGCCATTTGTCTCAGACAC 60.305 47.826 7.12 0.00 42.60 3.67
1690 1809 5.163612 GGTTAATTTGGTGGATGAGAAGCTC 60.164 44.000 0.00 0.00 0.00 4.09
1700 1819 2.090400 TGAGAAGCTCTGTGATGCAC 57.910 50.000 0.00 0.00 34.56 4.57
1816 1935 7.136822 TCTAGCCCATTTCTTCAGCTAATTA 57.863 36.000 0.00 0.00 35.74 1.40
1868 1989 3.050275 GCACTCCGCACTTCCACC 61.050 66.667 0.00 0.00 41.79 4.61
1934 2088 7.840342 CATATGGTGCCTTATTAGAGCTTAG 57.160 40.000 0.00 0.00 0.00 2.18
1935 2089 5.896073 ATGGTGCCTTATTAGAGCTTAGT 57.104 39.130 0.00 0.00 0.00 2.24
1937 2091 4.962995 TGGTGCCTTATTAGAGCTTAGTCT 59.037 41.667 0.00 0.00 0.00 3.24
1939 2093 5.293560 GTGCCTTATTAGAGCTTAGTCTGG 58.706 45.833 0.00 0.00 0.00 3.86
1940 2094 4.962995 TGCCTTATTAGAGCTTAGTCTGGT 59.037 41.667 0.00 0.00 0.00 4.00
1942 2096 5.069251 GCCTTATTAGAGCTTAGTCTGGTCA 59.931 44.000 0.00 0.00 34.73 4.02
1945 2099 7.363880 CCTTATTAGAGCTTAGTCTGGTCACAA 60.364 40.741 0.00 0.00 34.73 3.33
1946 2100 6.552445 ATTAGAGCTTAGTCTGGTCACAAT 57.448 37.500 0.00 0.00 34.73 2.71
1947 2101 4.199432 AGAGCTTAGTCTGGTCACAATG 57.801 45.455 0.00 0.00 34.73 2.82
1948 2102 3.055530 AGAGCTTAGTCTGGTCACAATGG 60.056 47.826 0.00 0.00 34.73 3.16
1949 2103 2.026822 AGCTTAGTCTGGTCACAATGGG 60.027 50.000 0.00 0.00 0.00 4.00
1950 2104 2.941415 GCTTAGTCTGGTCACAATGGGG 60.941 54.545 0.00 0.00 0.00 4.96
1951 2105 2.335681 TAGTCTGGTCACAATGGGGA 57.664 50.000 0.00 0.00 0.00 4.81
1952 2106 0.987294 AGTCTGGTCACAATGGGGAG 59.013 55.000 0.00 0.00 0.00 4.30
1953 2107 0.035056 GTCTGGTCACAATGGGGAGG 60.035 60.000 0.00 0.00 0.00 4.30
1954 2108 0.178876 TCTGGTCACAATGGGGAGGA 60.179 55.000 0.00 0.00 0.00 3.71
1958 2112 1.075536 GGTCACAATGGGGAGGAACTT 59.924 52.381 0.00 0.00 41.55 2.66
1959 2113 2.307686 GGTCACAATGGGGAGGAACTTA 59.692 50.000 0.00 0.00 41.55 2.24
1960 2114 3.610911 GTCACAATGGGGAGGAACTTAG 58.389 50.000 0.00 0.00 41.55 2.18
1961 2115 2.576191 TCACAATGGGGAGGAACTTAGG 59.424 50.000 0.00 0.00 41.55 2.69
1962 2116 2.576191 CACAATGGGGAGGAACTTAGGA 59.424 50.000 0.00 0.00 41.55 2.94
1963 2117 2.846827 ACAATGGGGAGGAACTTAGGAG 59.153 50.000 0.00 0.00 41.55 3.69
1964 2118 2.846827 CAATGGGGAGGAACTTAGGAGT 59.153 50.000 0.00 0.00 41.55 3.85
1966 2120 3.858696 TGGGGAGGAACTTAGGAGTAA 57.141 47.619 0.00 0.00 41.55 2.24
1967 2121 3.447950 TGGGGAGGAACTTAGGAGTAAC 58.552 50.000 0.00 0.00 41.55 2.50
1968 2122 3.181404 TGGGGAGGAACTTAGGAGTAACA 60.181 47.826 0.00 0.00 41.55 2.41
1970 2124 4.101274 GGGGAGGAACTTAGGAGTAACATC 59.899 50.000 0.00 0.00 41.55 3.06
1971 2125 4.715297 GGGAGGAACTTAGGAGTAACATCA 59.285 45.833 0.00 0.00 41.55 3.07
1972 2126 5.395435 GGGAGGAACTTAGGAGTAACATCAC 60.395 48.000 0.00 0.00 41.55 3.06
1973 2127 5.187186 GGAGGAACTTAGGAGTAACATCACA 59.813 44.000 0.00 0.00 41.55 3.58
1974 2128 6.038997 AGGAACTTAGGAGTAACATCACAC 57.961 41.667 0.00 0.00 34.21 3.82
1975 2129 5.542635 AGGAACTTAGGAGTAACATCACACA 59.457 40.000 0.00 0.00 34.21 3.72
1976 2130 5.638234 GGAACTTAGGAGTAACATCACACAC 59.362 44.000 0.00 0.00 34.21 3.82
1977 2131 6.420913 AACTTAGGAGTAACATCACACACT 57.579 37.500 0.00 0.00 34.21 3.55
1978 2132 6.026947 ACTTAGGAGTAACATCACACACTC 57.973 41.667 0.00 0.00 37.32 3.51
1984 2138 6.648725 GAGTAACATCACACACTCCAATAC 57.351 41.667 0.00 0.00 32.93 1.89
1988 2142 4.973168 ACATCACACACTCCAATACAACT 58.027 39.130 0.00 0.00 0.00 3.16
1989 2143 5.376625 ACATCACACACTCCAATACAACTT 58.623 37.500 0.00 0.00 0.00 2.66
1990 2144 5.827797 ACATCACACACTCCAATACAACTTT 59.172 36.000 0.00 0.00 0.00 2.66
1991 2145 5.749596 TCACACACTCCAATACAACTTTG 57.250 39.130 0.00 0.00 0.00 2.77
1992 2146 4.036262 TCACACACTCCAATACAACTTTGC 59.964 41.667 0.00 0.00 0.00 3.68
1993 2147 4.036734 CACACACTCCAATACAACTTTGCT 59.963 41.667 0.00 0.00 0.00 3.91
1996 2150 6.490040 ACACACTCCAATACAACTTTGCTTAT 59.510 34.615 0.00 0.00 0.00 1.73
1997 2151 6.803320 CACACTCCAATACAACTTTGCTTATG 59.197 38.462 0.00 0.00 0.00 1.90
1998 2152 6.490040 ACACTCCAATACAACTTTGCTTATGT 59.510 34.615 0.00 0.00 0.00 2.29
2000 2154 6.071952 ACTCCAATACAACTTTGCTTATGTGG 60.072 38.462 0.00 0.00 0.00 4.17
2002 2156 5.468592 CAATACAACTTTGCTTATGTGGCA 58.531 37.500 0.00 0.00 37.97 4.92
2003 2157 3.369546 ACAACTTTGCTTATGTGGCAC 57.630 42.857 11.55 11.55 39.55 5.01
2004 2158 2.692557 ACAACTTTGCTTATGTGGCACA 59.307 40.909 24.36 24.36 39.55 4.57
2006 2160 4.522405 ACAACTTTGCTTATGTGGCACATA 59.478 37.500 31.06 31.06 44.52 2.29
2008 2162 5.920193 ACTTTGCTTATGTGGCACATATT 57.080 34.783 33.89 17.87 44.52 1.28
2009 2163 6.284891 ACTTTGCTTATGTGGCACATATTT 57.715 33.333 33.89 17.52 44.52 1.40
2010 2164 7.403312 ACTTTGCTTATGTGGCACATATTTA 57.597 32.000 33.89 21.55 44.52 1.40
2011 2165 7.835822 ACTTTGCTTATGTGGCACATATTTAA 58.164 30.769 33.89 25.24 44.52 1.52
2012 2166 8.477256 ACTTTGCTTATGTGGCACATATTTAAT 58.523 29.630 33.89 15.77 44.52 1.40
2013 2167 8.645730 TTTGCTTATGTGGCACATATTTAATG 57.354 30.769 33.89 20.34 44.52 1.90
2014 2168 7.579761 TGCTTATGTGGCACATATTTAATGA 57.420 32.000 33.89 19.68 44.52 2.57
2015 2169 8.005192 TGCTTATGTGGCACATATTTAATGAA 57.995 30.769 33.89 20.49 44.52 2.57
2016 2170 8.136800 TGCTTATGTGGCACATATTTAATGAAG 58.863 33.333 33.89 27.40 44.52 3.02
2017 2171 8.352201 GCTTATGTGGCACATATTTAATGAAGA 58.648 33.333 33.89 17.83 44.52 2.87
2020 2174 7.558161 TGTGGCACATATTTAATGAAGAGAG 57.442 36.000 17.96 0.00 44.52 3.20
2021 2175 7.337938 TGTGGCACATATTTAATGAAGAGAGA 58.662 34.615 17.96 0.00 44.52 3.10
2022 2176 7.496920 TGTGGCACATATTTAATGAAGAGAGAG 59.503 37.037 17.96 0.00 44.52 3.20
2024 2178 6.995091 GGCACATATTTAATGAAGAGAGAGGT 59.005 38.462 0.00 0.00 0.00 3.85
2025 2179 7.041508 GGCACATATTTAATGAAGAGAGAGGTG 60.042 40.741 0.00 0.00 0.00 4.00
2026 2180 7.497249 GCACATATTTAATGAAGAGAGAGGTGT 59.503 37.037 0.00 0.00 0.00 4.16
2027 2181 9.388506 CACATATTTAATGAAGAGAGAGGTGTT 57.611 33.333 0.00 0.00 0.00 3.32
2028 2182 9.965902 ACATATTTAATGAAGAGAGAGGTGTTT 57.034 29.630 0.00 0.00 0.00 2.83
2030 2184 9.965902 ATATTTAATGAAGAGAGAGGTGTTTGT 57.034 29.630 0.00 0.00 0.00 2.83
2031 2185 7.496529 TTTAATGAAGAGAGAGGTGTTTGTG 57.503 36.000 0.00 0.00 0.00 3.33
2032 2186 3.475566 TGAAGAGAGAGGTGTTTGTGG 57.524 47.619 0.00 0.00 0.00 4.17
2033 2187 2.771943 TGAAGAGAGAGGTGTTTGTGGT 59.228 45.455 0.00 0.00 0.00 4.16
2034 2188 3.964688 TGAAGAGAGAGGTGTTTGTGGTA 59.035 43.478 0.00 0.00 0.00 3.25
2035 2189 4.407621 TGAAGAGAGAGGTGTTTGTGGTAA 59.592 41.667 0.00 0.00 0.00 2.85
2036 2190 4.338379 AGAGAGAGGTGTTTGTGGTAAC 57.662 45.455 0.00 0.00 0.00 2.50
2037 2191 3.967987 AGAGAGAGGTGTTTGTGGTAACT 59.032 43.478 0.00 0.00 37.61 2.24
2038 2192 5.145564 AGAGAGAGGTGTTTGTGGTAACTA 58.854 41.667 0.00 0.00 37.61 2.24
2039 2193 5.244178 AGAGAGAGGTGTTTGTGGTAACTAG 59.756 44.000 0.00 0.00 37.61 2.57
2040 2194 3.995048 GAGAGGTGTTTGTGGTAACTAGC 59.005 47.826 0.00 0.00 37.61 3.42
2041 2195 3.646637 AGAGGTGTTTGTGGTAACTAGCT 59.353 43.478 0.00 0.00 37.61 3.32
2042 2196 4.836736 AGAGGTGTTTGTGGTAACTAGCTA 59.163 41.667 0.00 0.00 37.61 3.32
2043 2197 5.306160 AGAGGTGTTTGTGGTAACTAGCTAA 59.694 40.000 0.00 0.00 37.61 3.09
2044 2198 5.548406 AGGTGTTTGTGGTAACTAGCTAAG 58.452 41.667 0.00 0.00 37.61 2.18
2045 2199 5.071384 AGGTGTTTGTGGTAACTAGCTAAGT 59.929 40.000 0.00 0.00 41.49 2.24
2047 2201 6.930722 GGTGTTTGTGGTAACTAGCTAAGTTA 59.069 38.462 10.09 10.09 46.85 2.24
2059 2213 3.858247 AGCTAAGTTACCGGAACATCAC 58.142 45.455 9.46 0.66 40.86 3.06
2060 2214 3.259876 AGCTAAGTTACCGGAACATCACA 59.740 43.478 9.46 0.00 40.86 3.58
2063 2217 2.762745 AGTTACCGGAACATCACACAC 58.237 47.619 9.46 0.00 40.86 3.82
2065 2219 3.135994 GTTACCGGAACATCACACACTT 58.864 45.455 9.46 0.00 38.02 3.16
2066 2220 1.878953 ACCGGAACATCACACACTTC 58.121 50.000 9.46 0.00 0.00 3.01
2110 2264 8.445275 AACCTAATAAATACATCGTTGCATGA 57.555 30.769 0.00 0.00 0.00 3.07
2112 2266 7.497579 ACCTAATAAATACATCGTTGCATGACA 59.502 33.333 0.00 0.00 0.00 3.58
2114 2268 6.925610 ATAAATACATCGTTGCATGACACT 57.074 33.333 0.00 0.00 0.00 3.55
2115 2269 8.432110 AATAAATACATCGTTGCATGACACTA 57.568 30.769 0.00 0.00 0.00 2.74
2117 2271 3.038788 ACATCGTTGCATGACACTACA 57.961 42.857 0.00 0.00 0.00 2.74
2118 2272 3.599343 ACATCGTTGCATGACACTACAT 58.401 40.909 0.00 0.00 0.00 2.29
2119 2273 4.754322 ACATCGTTGCATGACACTACATA 58.246 39.130 0.00 0.00 0.00 2.29
2120 2274 4.805719 ACATCGTTGCATGACACTACATAG 59.194 41.667 0.00 0.00 0.00 2.23
2121 2275 4.712122 TCGTTGCATGACACTACATAGA 57.288 40.909 0.00 0.00 0.00 1.98
2122 2276 5.262588 TCGTTGCATGACACTACATAGAT 57.737 39.130 0.00 0.00 0.00 1.98
2123 2277 5.043248 TCGTTGCATGACACTACATAGATG 58.957 41.667 0.00 0.00 0.00 2.90
2125 2279 5.291858 CGTTGCATGACACTACATAGATGTT 59.708 40.000 0.00 0.00 41.97 2.71
2126 2280 6.508563 CGTTGCATGACACTACATAGATGTTC 60.509 42.308 0.00 0.00 41.97 3.18
2127 2281 5.359756 TGCATGACACTACATAGATGTTCC 58.640 41.667 0.00 0.00 41.97 3.62
2129 2283 6.323739 TGCATGACACTACATAGATGTTCCTA 59.676 38.462 0.00 0.00 41.97 2.94
2130 2284 6.642950 GCATGACACTACATAGATGTTCCTAC 59.357 42.308 0.00 0.00 41.97 3.18
2132 2286 5.597182 TGACACTACATAGATGTTCCTACCC 59.403 44.000 0.00 0.00 41.97 3.69
2133 2287 5.525484 ACACTACATAGATGTTCCTACCCA 58.475 41.667 0.00 0.00 41.97 4.51
2134 2288 5.363005 ACACTACATAGATGTTCCTACCCAC 59.637 44.000 0.00 0.00 41.97 4.61
2135 2289 5.598830 CACTACATAGATGTTCCTACCCACT 59.401 44.000 0.00 0.00 41.97 4.00
2136 2290 6.776116 CACTACATAGATGTTCCTACCCACTA 59.224 42.308 0.00 0.00 41.97 2.74
2137 2291 7.451877 CACTACATAGATGTTCCTACCCACTAT 59.548 40.741 0.00 0.00 41.97 2.12
2138 2292 6.672266 ACATAGATGTTCCTACCCACTATG 57.328 41.667 0.00 0.00 37.90 2.23
2140 2294 4.280789 AGATGTTCCTACCCACTATGGA 57.719 45.455 0.00 0.00 40.96 3.41
2142 2296 3.769189 TGTTCCTACCCACTATGGAGA 57.231 47.619 0.00 0.00 40.96 3.71
2143 2297 4.280789 TGTTCCTACCCACTATGGAGAT 57.719 45.455 0.00 0.00 40.96 2.75
2144 2298 5.412617 TGTTCCTACCCACTATGGAGATA 57.587 43.478 0.00 0.00 40.96 1.98
2147 2301 6.103649 TGTTCCTACCCACTATGGAGATAGTA 59.896 42.308 0.00 0.00 42.55 1.82
2148 2302 6.791847 TCCTACCCACTATGGAGATAGTAA 57.208 41.667 0.00 0.00 42.55 2.24
2149 2303 6.550163 TCCTACCCACTATGGAGATAGTAAC 58.450 44.000 0.00 0.00 42.55 2.50
2150 2304 6.103649 TCCTACCCACTATGGAGATAGTAACA 59.896 42.308 0.00 0.00 42.55 2.41
2151 2305 6.954684 CCTACCCACTATGGAGATAGTAACAT 59.045 42.308 0.00 0.00 42.55 2.71
2152 2306 8.114102 CCTACCCACTATGGAGATAGTAACATA 58.886 40.741 0.00 0.00 42.55 2.29
2153 2307 9.179909 CTACCCACTATGGAGATAGTAACATAG 57.820 40.741 8.52 8.52 42.55 2.23
2160 2314 9.621629 CTATGGAGATAGTAACATAGTCTAGGG 57.378 40.741 0.00 0.00 38.48 3.53
2161 2315 7.643612 TGGAGATAGTAACATAGTCTAGGGA 57.356 40.000 0.00 0.00 0.00 4.20
2162 2316 8.053776 TGGAGATAGTAACATAGTCTAGGGAA 57.946 38.462 0.00 0.00 0.00 3.97
2163 2317 8.508601 TGGAGATAGTAACATAGTCTAGGGAAA 58.491 37.037 0.00 0.00 0.00 3.13
2164 2318 9.536510 GGAGATAGTAACATAGTCTAGGGAAAT 57.463 37.037 0.00 0.00 0.00 2.17
2166 2320 9.884814 AGATAGTAACATAGTCTAGGGAAATGT 57.115 33.333 0.00 0.00 34.09 2.71
2167 2321 9.915629 GATAGTAACATAGTCTAGGGAAATGTG 57.084 37.037 0.00 0.00 33.44 3.21
2169 2323 8.834004 AGTAACATAGTCTAGGGAAATGTGTA 57.166 34.615 0.00 0.00 33.44 2.90
2170 2324 9.263446 AGTAACATAGTCTAGGGAAATGTGTAA 57.737 33.333 0.00 0.00 33.44 2.41
2171 2325 9.530633 GTAACATAGTCTAGGGAAATGTGTAAG 57.469 37.037 0.00 0.00 33.44 2.34
2172 2326 7.735326 ACATAGTCTAGGGAAATGTGTAAGT 57.265 36.000 0.00 0.00 32.54 2.24
2173 2327 8.147244 ACATAGTCTAGGGAAATGTGTAAGTT 57.853 34.615 0.00 0.00 32.54 2.66
2174 2328 9.263446 ACATAGTCTAGGGAAATGTGTAAGTTA 57.737 33.333 0.00 0.00 32.54 2.24
2176 2330 7.793948 AGTCTAGGGAAATGTGTAAGTTACT 57.206 36.000 14.00 0.00 0.00 2.24
2177 2331 8.890410 AGTCTAGGGAAATGTGTAAGTTACTA 57.110 34.615 14.00 4.12 0.00 1.82
2178 2332 8.968969 AGTCTAGGGAAATGTGTAAGTTACTAG 58.031 37.037 14.00 4.64 0.00 2.57
2179 2333 7.705752 GTCTAGGGAAATGTGTAAGTTACTAGC 59.294 40.741 14.00 5.48 0.00 3.42
2181 2335 7.017319 AGGGAAATGTGTAAGTTACTAGCTT 57.983 36.000 14.00 3.28 0.00 3.74
2182 2336 8.142485 AGGGAAATGTGTAAGTTACTAGCTTA 57.858 34.615 14.00 0.00 0.00 3.09
2183 2337 8.769359 AGGGAAATGTGTAAGTTACTAGCTTAT 58.231 33.333 14.00 0.00 32.01 1.73
2190 2344 9.419297 TGTGTAAGTTACTAGCTTATGTTCTTG 57.581 33.333 14.00 0.00 32.01 3.02
2192 2346 6.986904 AAGTTACTAGCTTATGTTCTTGCC 57.013 37.500 0.00 0.00 0.00 4.52
2193 2347 5.429130 AGTTACTAGCTTATGTTCTTGCCC 58.571 41.667 0.00 0.00 0.00 5.36
2194 2348 5.045869 AGTTACTAGCTTATGTTCTTGCCCA 60.046 40.000 0.00 0.00 0.00 5.36
2195 2349 4.510167 ACTAGCTTATGTTCTTGCCCAT 57.490 40.909 0.00 0.00 0.00 4.00
2196 2350 4.860022 ACTAGCTTATGTTCTTGCCCATT 58.140 39.130 0.00 0.00 0.00 3.16
2198 2352 3.434309 AGCTTATGTTCTTGCCCATTGT 58.566 40.909 0.00 0.00 0.00 2.71
2200 2354 3.193267 GCTTATGTTCTTGCCCATTGTGA 59.807 43.478 0.00 0.00 0.00 3.58
2208 2929 0.469705 TGCCCATTGTGACCAGCTTT 60.470 50.000 0.00 0.00 0.00 3.51
2310 3031 3.559655 TGTGAAGCACAGTGTGAATACAC 59.440 43.478 27.37 24.74 43.55 2.90
2358 3079 8.676401 ACATATTCAAAATTTTAAATGGCTGCC 58.324 29.630 12.87 12.87 0.00 4.85
2399 3120 7.569485 TGGGTCCCACTAAACAACATCTATATA 59.431 37.037 6.47 0.00 0.00 0.86
2400 3121 8.095169 GGGTCCCACTAAACAACATCTATATAG 58.905 40.741 1.78 3.10 0.00 1.31
2401 3122 8.648693 GGTCCCACTAAACAACATCTATATAGT 58.351 37.037 9.58 0.00 0.00 2.12
2411 3132 8.921353 ACAACATCTATATAGTACTCCTTCGT 57.079 34.615 9.58 0.00 0.00 3.85
2412 3133 9.001542 ACAACATCTATATAGTACTCCTTCGTC 57.998 37.037 9.58 0.00 0.00 4.20
2413 3134 8.452534 CAACATCTATATAGTACTCCTTCGTCC 58.547 40.741 9.58 0.00 0.00 4.79
2414 3135 6.817641 ACATCTATATAGTACTCCTTCGTCCG 59.182 42.308 9.58 0.00 0.00 4.79
2415 3136 5.728471 TCTATATAGTACTCCTTCGTCCGG 58.272 45.833 9.58 0.00 0.00 5.14
2416 3137 4.630644 ATATAGTACTCCTTCGTCCGGA 57.369 45.455 0.00 0.00 0.00 5.14
2417 3138 2.787473 TAGTACTCCTTCGTCCGGAA 57.213 50.000 5.23 0.00 0.00 4.30
2418 3139 1.915141 AGTACTCCTTCGTCCGGAAA 58.085 50.000 5.23 0.00 33.34 3.13
2419 3140 2.454538 AGTACTCCTTCGTCCGGAAAT 58.545 47.619 5.23 0.00 33.34 2.17
2420 3141 3.624777 AGTACTCCTTCGTCCGGAAATA 58.375 45.455 5.23 0.00 33.34 1.40
2421 3142 2.955477 ACTCCTTCGTCCGGAAATAC 57.045 50.000 5.23 0.00 33.34 1.89
2422 3143 2.454538 ACTCCTTCGTCCGGAAATACT 58.545 47.619 5.23 0.00 33.34 2.12
2423 3144 2.830321 ACTCCTTCGTCCGGAAATACTT 59.170 45.455 5.23 0.00 33.34 2.24
2424 3145 3.187700 CTCCTTCGTCCGGAAATACTTG 58.812 50.000 5.23 0.00 33.34 3.16
2425 3146 2.564062 TCCTTCGTCCGGAAATACTTGT 59.436 45.455 5.23 0.00 33.34 3.16
2426 3147 2.928116 CCTTCGTCCGGAAATACTTGTC 59.072 50.000 5.23 0.00 33.34 3.18
2427 3148 3.581755 CTTCGTCCGGAAATACTTGTCA 58.418 45.455 5.23 0.00 33.34 3.58
2428 3149 2.950433 TCGTCCGGAAATACTTGTCAC 58.050 47.619 5.23 0.00 0.00 3.67
2429 3150 1.652124 CGTCCGGAAATACTTGTCACG 59.348 52.381 5.23 0.00 0.00 4.35
2430 3151 2.669113 CGTCCGGAAATACTTGTCACGA 60.669 50.000 5.23 0.00 0.00 4.35
2431 3152 3.319755 GTCCGGAAATACTTGTCACGAA 58.680 45.455 5.23 0.00 0.00 3.85
2432 3153 3.742369 GTCCGGAAATACTTGTCACGAAA 59.258 43.478 5.23 0.00 0.00 3.46
2433 3154 4.211794 GTCCGGAAATACTTGTCACGAAAA 59.788 41.667 5.23 0.00 0.00 2.29
2434 3155 4.998672 TCCGGAAATACTTGTCACGAAAAT 59.001 37.500 0.00 0.00 0.00 1.82
2435 3156 5.086058 CCGGAAATACTTGTCACGAAAATG 58.914 41.667 0.00 0.00 0.00 2.32
2436 3157 5.086058 CGGAAATACTTGTCACGAAAATGG 58.914 41.667 0.00 0.00 0.00 3.16
2437 3158 5.399013 GGAAATACTTGTCACGAAAATGGG 58.601 41.667 0.00 0.00 0.00 4.00
2438 3159 5.048294 GGAAATACTTGTCACGAAAATGGGT 60.048 40.000 0.00 0.00 0.00 4.51
2439 3160 5.371115 AATACTTGTCACGAAAATGGGTG 57.629 39.130 0.00 0.00 35.50 4.61
2440 3161 2.650322 ACTTGTCACGAAAATGGGTGT 58.350 42.857 0.00 0.00 35.67 4.16
2441 3162 3.811083 ACTTGTCACGAAAATGGGTGTA 58.189 40.909 0.00 0.00 35.67 2.90
2442 3163 4.394729 ACTTGTCACGAAAATGGGTGTAT 58.605 39.130 0.00 0.00 35.67 2.29
2443 3164 4.454504 ACTTGTCACGAAAATGGGTGTATC 59.545 41.667 0.00 0.00 35.67 2.24
2444 3165 4.280436 TGTCACGAAAATGGGTGTATCT 57.720 40.909 0.00 0.00 35.67 1.98
2445 3166 5.408880 TGTCACGAAAATGGGTGTATCTA 57.591 39.130 0.00 0.00 35.67 1.98
2446 3167 5.416083 TGTCACGAAAATGGGTGTATCTAG 58.584 41.667 0.00 0.00 35.67 2.43
2447 3168 5.186215 TGTCACGAAAATGGGTGTATCTAGA 59.814 40.000 0.00 0.00 35.67 2.43
2448 3169 5.519206 GTCACGAAAATGGGTGTATCTAGAC 59.481 44.000 0.00 0.00 35.67 2.59
2449 3170 5.186215 TCACGAAAATGGGTGTATCTAGACA 59.814 40.000 0.00 0.00 35.67 3.41
2450 3171 6.049149 CACGAAAATGGGTGTATCTAGACAT 58.951 40.000 0.00 0.00 0.00 3.06
2451 3172 7.068962 TCACGAAAATGGGTGTATCTAGACATA 59.931 37.037 0.00 0.00 35.67 2.29
2452 3173 7.872993 CACGAAAATGGGTGTATCTAGACATAT 59.127 37.037 0.00 0.00 0.00 1.78
2453 3174 8.429641 ACGAAAATGGGTGTATCTAGACATATT 58.570 33.333 0.00 0.00 0.00 1.28
2454 3175 9.273016 CGAAAATGGGTGTATCTAGACATATTT 57.727 33.333 0.00 0.00 0.00 1.40
2490 3211 9.859427 ATACATCCATTTTTATCCATTTATGCG 57.141 29.630 0.00 0.00 0.00 4.73
2491 3212 7.950512 ACATCCATTTTTATCCATTTATGCGA 58.049 30.769 0.00 0.00 0.00 5.10
2492 3213 7.867403 ACATCCATTTTTATCCATTTATGCGAC 59.133 33.333 0.00 0.00 0.00 5.19
2493 3214 7.340122 TCCATTTTTATCCATTTATGCGACA 57.660 32.000 0.00 0.00 0.00 4.35
2494 3215 7.776107 TCCATTTTTATCCATTTATGCGACAA 58.224 30.769 0.00 0.00 0.00 3.18
2495 3216 7.920151 TCCATTTTTATCCATTTATGCGACAAG 59.080 33.333 0.00 0.00 0.00 3.16
2496 3217 7.706179 CCATTTTTATCCATTTATGCGACAAGT 59.294 33.333 0.00 0.00 0.00 3.16
2497 3218 9.729023 CATTTTTATCCATTTATGCGACAAGTA 57.271 29.630 0.00 0.00 0.00 2.24
2501 3222 9.944663 TTTATCCATTTATGCGACAAGTATTTC 57.055 29.630 0.00 0.00 0.00 2.17
2502 3223 7.807977 ATCCATTTATGCGACAAGTATTTCT 57.192 32.000 0.00 0.00 0.00 2.52
2503 3224 7.015226 TCCATTTATGCGACAAGTATTTCTG 57.985 36.000 0.00 0.00 0.00 3.02
2504 3225 6.038161 TCCATTTATGCGACAAGTATTTCTGG 59.962 38.462 0.00 0.00 0.00 3.86
2505 3226 6.038161 CCATTTATGCGACAAGTATTTCTGGA 59.962 38.462 0.00 0.00 0.00 3.86
2506 3227 6.417191 TTTATGCGACAAGTATTTCTGGAC 57.583 37.500 0.00 0.00 0.00 4.02
2507 3228 2.333926 TGCGACAAGTATTTCTGGACG 58.666 47.619 0.00 0.00 38.06 4.79
2508 3229 1.659098 GCGACAAGTATTTCTGGACGG 59.341 52.381 0.00 0.00 36.20 4.79
2509 3230 2.673043 GCGACAAGTATTTCTGGACGGA 60.673 50.000 0.00 0.00 36.20 4.69
2510 3231 3.179830 CGACAAGTATTTCTGGACGGAG 58.820 50.000 0.00 0.00 33.12 4.63
2511 3232 3.522553 GACAAGTATTTCTGGACGGAGG 58.477 50.000 0.00 0.00 0.00 4.30
2512 3233 2.236395 ACAAGTATTTCTGGACGGAGGG 59.764 50.000 0.00 0.00 0.00 4.30
2526 3247 2.835764 ACGGAGGGAGTATAAGTTTGCA 59.164 45.455 0.00 0.00 0.00 4.08
2655 3379 9.454585 CTATGAATATTCACAATTGCGATGTTT 57.545 29.630 20.19 2.34 40.49 2.83
2938 3662 1.022735 ACGTGTTCACTGACTCGTCT 58.977 50.000 0.00 0.00 43.63 4.18
2965 3689 3.209410 CTCGATTAGCATGGCCTTCTTT 58.791 45.455 3.32 0.00 0.00 2.52
3092 3816 1.212935 CCCATTTGGTTCCCTCTCGAT 59.787 52.381 0.00 0.00 0.00 3.59
3245 3978 9.416794 TGTAATTATGTTTCACGCAAATGAATT 57.583 25.926 0.00 0.00 38.37 2.17
3267 4000 8.565896 AATTAGAGTGTGTGCTCAAATGATTA 57.434 30.769 0.00 0.00 37.94 1.75
3296 4029 4.350368 TCAAGGAATGTGTGTTCTGCTA 57.650 40.909 0.00 0.00 0.00 3.49
3304 4037 8.806146 AGGAATGTGTGTTCTGCTAAAATATTT 58.194 29.630 0.00 0.00 0.00 1.40
3484 4217 2.740447 CCTAAGTTGGCTCGGTGTTTAC 59.260 50.000 0.00 0.00 0.00 2.01
3638 4371 2.493278 CCTGTTCATTAGGGTTTGGCAG 59.507 50.000 0.00 0.00 0.00 4.85
3645 4378 1.068948 TAGGGTTTGGCAGTGGCTTA 58.931 50.000 18.53 3.06 40.87 3.09
3653 4386 4.778213 TTGGCAGTGGCTTAATCTAGAT 57.222 40.909 18.53 0.00 40.87 1.98
3674 4407 6.303839 AGATACTCCTACTCAAGATGACCTC 58.696 44.000 0.00 0.00 0.00 3.85
3786 4519 0.798776 CAAGGAACGCGCTCATCTTT 59.201 50.000 12.15 2.83 0.00 2.52
3942 4676 5.045872 TGATCTCTGCATGTAATCAACTCG 58.954 41.667 0.00 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 8.441312 ACTGAATCGAAAACCTAACAAAAGTA 57.559 30.769 0.00 0.00 0.00 2.24
8 9 7.703197 GGAAACTGAATCGAAAACCTAACAAAA 59.297 33.333 0.00 0.00 0.00 2.44
28 29 8.250143 AGTTGATTCAATTTGTAAGGGAAACT 57.750 30.769 1.78 0.00 0.00 2.66
54 55 9.175312 CTATGGCATTGCATTATAGAAGAAGAT 57.825 33.333 4.78 0.00 0.00 2.40
120 121 9.816354 TCAACAATAGATCGATCATGAACTAAA 57.184 29.630 26.47 3.14 28.73 1.85
142 143 2.851195 ACCAGACACCATTGAGTCAAC 58.149 47.619 7.96 0.00 37.23 3.18
158 159 5.985530 GTCATCCTCCTTTTTGAAAAACCAG 59.014 40.000 0.00 0.00 0.00 4.00
161 162 5.753438 GGTGTCATCCTCCTTTTTGAAAAAC 59.247 40.000 0.00 0.00 0.00 2.43
168 170 1.271926 CGGGGTGTCATCCTCCTTTTT 60.272 52.381 1.17 0.00 0.00 1.94
183 185 2.284625 TGATGCAGAGACCGGGGT 60.285 61.111 6.32 0.00 0.00 4.95
187 189 2.202987 GCCCTGATGCAGAGACCG 60.203 66.667 0.00 0.00 32.44 4.79
189 191 1.445095 ATCGCCCTGATGCAGAGAC 59.555 57.895 0.00 0.00 35.45 3.36
190 192 3.961009 ATCGCCCTGATGCAGAGA 58.039 55.556 0.00 0.00 35.45 3.10
204 206 2.495409 TAAAATGGCTGCATGCATCG 57.505 45.000 22.97 12.00 45.15 3.84
259 261 4.521146 AGATGGTGGCTTCAGACTTATTG 58.479 43.478 0.00 0.00 0.00 1.90
269 271 2.229792 TGTTGTCAAGATGGTGGCTTC 58.770 47.619 0.00 0.00 0.00 3.86
270 272 2.363306 TGTTGTCAAGATGGTGGCTT 57.637 45.000 0.00 0.00 0.00 4.35
282 284 1.067142 GGAGTAGCACGGATGTTGTCA 60.067 52.381 0.00 0.00 0.00 3.58
284 286 0.973632 TGGAGTAGCACGGATGTTGT 59.026 50.000 0.00 0.00 0.00 3.32
287 289 1.831106 TGATTGGAGTAGCACGGATGT 59.169 47.619 0.00 0.00 0.00 3.06
292 294 4.944962 TCAAATTGATTGGAGTAGCACG 57.055 40.909 0.00 0.00 39.62 5.34
301 303 5.118286 GCACCCCTTAATCAAATTGATTGG 58.882 41.667 26.26 21.02 45.77 3.16
309 311 3.195396 GCAATCTGCACCCCTTAATCAAA 59.805 43.478 0.00 0.00 44.26 2.69
331 333 2.894126 AGATCTGGGTATGCGACTTAGG 59.106 50.000 0.00 0.00 0.00 2.69
334 336 2.101582 GTGAGATCTGGGTATGCGACTT 59.898 50.000 0.00 0.00 0.00 3.01
337 339 1.409064 GTGTGAGATCTGGGTATGCGA 59.591 52.381 0.00 0.00 0.00 5.10
350 352 0.179234 TGTTCGGCTTTGGTGTGAGA 59.821 50.000 0.00 0.00 0.00 3.27
355 357 3.428534 GCTTTAAATGTTCGGCTTTGGTG 59.571 43.478 0.00 0.00 0.00 4.17
360 362 1.201414 CCGGCTTTAAATGTTCGGCTT 59.799 47.619 0.00 0.00 0.00 4.35
379 381 2.997315 GGTTTGCTTGGGGCCTCC 60.997 66.667 0.00 0.72 40.92 4.30
383 385 0.603439 CAATGTGGTTTGCTTGGGGC 60.603 55.000 0.00 0.00 42.22 5.80
390 392 0.039527 GACCCGACAATGTGGTTTGC 60.040 55.000 0.00 0.00 30.97 3.68
412 414 3.254024 ATGGGACCGGTGTGTGCTC 62.254 63.158 14.63 0.00 0.00 4.26
413 415 3.249189 ATGGGACCGGTGTGTGCT 61.249 61.111 14.63 0.00 0.00 4.40
424 426 2.421424 GACAGTTGAGAATGCATGGGAC 59.579 50.000 0.00 0.00 0.00 4.46
429 431 2.079158 CGGTGACAGTTGAGAATGCAT 58.921 47.619 0.00 0.00 0.00 3.96
430 432 1.511850 CGGTGACAGTTGAGAATGCA 58.488 50.000 0.00 0.00 0.00 3.96
434 436 1.202639 ACATGCGGTGACAGTTGAGAA 60.203 47.619 0.00 0.00 0.00 2.87
462 464 4.971125 GATGGCGGCGGGCTCTAC 62.971 72.222 18.59 4.30 42.94 2.59
478 480 5.733676 TGAGAATGAATTGATGGAAGACGA 58.266 37.500 0.00 0.00 0.00 4.20
488 490 4.564782 ACCTGCTCTGAGAATGAATTGA 57.435 40.909 9.28 0.00 0.00 2.57
493 495 3.701664 TCAGTACCTGCTCTGAGAATGA 58.298 45.455 9.28 0.00 36.04 2.57
519 521 2.669569 GCAGCCTGGCAAAGTCGA 60.670 61.111 22.65 0.00 0.00 4.20
556 558 3.312421 CGTAAAGAGGTGGCATTGTATGG 59.688 47.826 0.00 0.00 0.00 2.74
564 566 0.036164 ATGCACGTAAAGAGGTGGCA 59.964 50.000 0.00 0.00 40.95 4.92
573 575 5.448496 GCACTTTATGATGGATGCACGTAAA 60.448 40.000 0.00 2.06 33.27 2.01
574 576 4.035091 GCACTTTATGATGGATGCACGTAA 59.965 41.667 0.00 0.00 33.27 3.18
579 581 3.888583 TCAGCACTTTATGATGGATGCA 58.111 40.909 0.00 0.00 45.22 3.96
620 624 0.623723 ACACATGCCCCCGAAGTATT 59.376 50.000 0.00 0.00 0.00 1.89
621 625 0.107214 CACACATGCCCCCGAAGTAT 60.107 55.000 0.00 0.00 0.00 2.12
653 657 6.400621 CGAGACAAACAAGTCATAATGCGTTA 60.401 38.462 0.00 0.00 40.98 3.18
657 661 5.283060 ACGAGACAAACAAGTCATAATGC 57.717 39.130 0.00 0.00 40.98 3.56
678 682 0.309612 AAAATGTTGCCGTGGTCGAC 59.690 50.000 7.13 7.13 39.71 4.20
713 717 0.601046 ATATGCGCCATCAGTCGTGG 60.601 55.000 4.18 0.00 39.80 4.94
733 737 4.334759 CCTTGAGGTTTCAGTCATATGCTG 59.665 45.833 16.45 16.45 34.15 4.41
734 738 4.521146 CCTTGAGGTTTCAGTCATATGCT 58.479 43.478 0.00 0.00 34.15 3.79
735 739 3.065925 GCCTTGAGGTTTCAGTCATATGC 59.934 47.826 0.00 0.00 37.57 3.14
736 740 4.264253 TGCCTTGAGGTTTCAGTCATATG 58.736 43.478 0.00 0.00 37.57 1.78
737 741 4.574674 TGCCTTGAGGTTTCAGTCATAT 57.425 40.909 0.00 0.00 37.57 1.78
738 742 4.326826 CTTGCCTTGAGGTTTCAGTCATA 58.673 43.478 0.00 0.00 37.57 2.15
739 743 2.957402 TGCCTTGAGGTTTCAGTCAT 57.043 45.000 0.00 0.00 37.57 3.06
740 744 2.575532 CTTGCCTTGAGGTTTCAGTCA 58.424 47.619 0.00 0.00 37.57 3.41
901 905 4.326826 GTTCAGTTCAGTTGGATGGATCA 58.673 43.478 0.00 0.00 0.00 2.92
1282 1292 4.840005 TCACACGCCACGCAACCA 62.840 61.111 0.00 0.00 0.00 3.67
1284 1294 4.666532 GCTCACACGCCACGCAAC 62.667 66.667 0.00 0.00 0.00 4.17
1305 1358 3.619233 ACGCACCAAATGTTAGTTGAC 57.381 42.857 0.00 0.00 0.00 3.18
1315 1368 0.589223 CCAACACGTACGCACCAAAT 59.411 50.000 16.72 0.00 0.00 2.32
1374 1429 1.988409 CGTGGTGTAGATGAACGCG 59.012 57.895 3.53 3.53 0.00 6.01
1499 1554 1.617947 AAAGGGTTGCCAAAACGCCA 61.618 50.000 2.12 0.00 34.12 5.69
1512 1567 2.158475 TCTGAGACAAATGGCAAAGGGT 60.158 45.455 0.00 0.00 0.00 4.34
1609 1728 1.067425 GCCAAGCATGCAGAACATTCA 60.067 47.619 21.98 0.00 36.64 2.57
1700 1819 2.430921 GTCCCTGACGACGTGCTG 60.431 66.667 4.58 1.44 0.00 4.41
1816 1935 3.655276 AGGTCGTGTTCGAGTACAATT 57.345 42.857 0.00 0.00 46.96 2.32
1868 1989 8.098912 TGATCCACATGTGAGGAATTATATGAG 58.901 37.037 27.46 5.08 38.28 2.90
1926 2080 3.055530 CCATTGTGACCAGACTAAGCTCT 60.056 47.826 0.00 0.00 0.00 4.09
1934 2088 0.035056 CCTCCCCATTGTGACCAGAC 60.035 60.000 0.00 0.00 0.00 3.51
1935 2089 0.178876 TCCTCCCCATTGTGACCAGA 60.179 55.000 0.00 0.00 0.00 3.86
1937 2091 0.404040 GTTCCTCCCCATTGTGACCA 59.596 55.000 0.00 0.00 0.00 4.02
1939 2093 2.586648 AAGTTCCTCCCCATTGTGAC 57.413 50.000 0.00 0.00 0.00 3.67
1940 2094 2.576191 CCTAAGTTCCTCCCCATTGTGA 59.424 50.000 0.00 0.00 0.00 3.58
1942 2096 2.846827 CTCCTAAGTTCCTCCCCATTGT 59.153 50.000 0.00 0.00 0.00 2.71
1945 2099 2.972153 ACTCCTAAGTTCCTCCCCAT 57.028 50.000 0.00 0.00 28.74 4.00
1946 2100 3.181404 TGTTACTCCTAAGTTCCTCCCCA 60.181 47.826 0.00 0.00 36.92 4.96
1947 2101 3.447950 TGTTACTCCTAAGTTCCTCCCC 58.552 50.000 0.00 0.00 36.92 4.81
1948 2102 4.715297 TGATGTTACTCCTAAGTTCCTCCC 59.285 45.833 0.00 0.00 36.92 4.30
1949 2103 5.187186 TGTGATGTTACTCCTAAGTTCCTCC 59.813 44.000 0.00 0.00 36.92 4.30
1950 2104 6.100668 GTGTGATGTTACTCCTAAGTTCCTC 58.899 44.000 0.00 0.00 36.92 3.71
1951 2105 5.542635 TGTGTGATGTTACTCCTAAGTTCCT 59.457 40.000 0.00 0.00 36.92 3.36
1952 2106 5.638234 GTGTGTGATGTTACTCCTAAGTTCC 59.362 44.000 0.00 0.00 36.92 3.62
1953 2107 6.456501 AGTGTGTGATGTTACTCCTAAGTTC 58.543 40.000 0.00 0.00 36.92 3.01
1954 2108 6.420913 AGTGTGTGATGTTACTCCTAAGTT 57.579 37.500 0.00 0.00 36.92 2.66
1961 2115 6.163476 TGTATTGGAGTGTGTGATGTTACTC 58.837 40.000 0.00 0.00 38.98 2.59
1962 2116 6.109156 TGTATTGGAGTGTGTGATGTTACT 57.891 37.500 0.00 0.00 0.00 2.24
1963 2117 6.426937 AGTTGTATTGGAGTGTGTGATGTTAC 59.573 38.462 0.00 0.00 0.00 2.50
1964 2118 6.530120 AGTTGTATTGGAGTGTGTGATGTTA 58.470 36.000 0.00 0.00 0.00 2.41
1966 2120 4.973168 AGTTGTATTGGAGTGTGTGATGT 58.027 39.130 0.00 0.00 0.00 3.06
1967 2121 5.947228 AAGTTGTATTGGAGTGTGTGATG 57.053 39.130 0.00 0.00 0.00 3.07
1968 2122 5.278463 GCAAAGTTGTATTGGAGTGTGTGAT 60.278 40.000 0.00 0.00 0.00 3.06
1970 2124 4.036734 AGCAAAGTTGTATTGGAGTGTGTG 59.963 41.667 0.00 0.00 0.00 3.82
1971 2125 4.207165 AGCAAAGTTGTATTGGAGTGTGT 58.793 39.130 0.00 0.00 0.00 3.72
1972 2126 4.836125 AGCAAAGTTGTATTGGAGTGTG 57.164 40.909 0.00 0.00 0.00 3.82
1973 2127 6.490040 ACATAAGCAAAGTTGTATTGGAGTGT 59.510 34.615 0.00 0.00 0.00 3.55
1974 2128 6.803320 CACATAAGCAAAGTTGTATTGGAGTG 59.197 38.462 0.00 0.00 0.00 3.51
1975 2129 6.071952 CCACATAAGCAAAGTTGTATTGGAGT 60.072 38.462 0.00 0.00 0.00 3.85
1976 2130 6.324819 CCACATAAGCAAAGTTGTATTGGAG 58.675 40.000 0.00 0.00 0.00 3.86
1977 2131 5.336372 GCCACATAAGCAAAGTTGTATTGGA 60.336 40.000 0.00 0.00 0.00 3.53
1978 2132 4.864247 GCCACATAAGCAAAGTTGTATTGG 59.136 41.667 0.00 0.00 0.00 3.16
1979 2133 5.345741 GTGCCACATAAGCAAAGTTGTATTG 59.654 40.000 0.00 0.00 43.02 1.90
1981 2135 4.522405 TGTGCCACATAAGCAAAGTTGTAT 59.478 37.500 0.00 0.00 43.02 2.29
1982 2136 3.885901 TGTGCCACATAAGCAAAGTTGTA 59.114 39.130 0.00 0.00 43.02 2.41
1984 2138 3.367992 TGTGCCACATAAGCAAAGTTG 57.632 42.857 0.00 0.00 43.02 3.16
1988 2142 8.473219 TCATTAAATATGTGCCACATAAGCAAA 58.527 29.630 20.57 12.83 43.50 3.68
1989 2143 8.005192 TCATTAAATATGTGCCACATAAGCAA 57.995 30.769 20.57 14.07 43.50 3.91
1990 2144 7.579761 TCATTAAATATGTGCCACATAAGCA 57.420 32.000 20.57 6.59 43.50 3.91
1991 2145 8.352201 TCTTCATTAAATATGTGCCACATAAGC 58.648 33.333 20.57 0.00 43.50 3.09
1992 2146 9.888878 CTCTTCATTAAATATGTGCCACATAAG 57.111 33.333 20.57 12.73 43.50 1.73
1993 2147 9.625747 TCTCTTCATTAAATATGTGCCACATAA 57.374 29.630 20.57 7.37 43.50 1.90
1996 2150 7.337938 TCTCTCTTCATTAAATATGTGCCACA 58.662 34.615 0.00 0.00 0.00 4.17
1997 2151 7.041508 CCTCTCTCTTCATTAAATATGTGCCAC 60.042 40.741 0.00 0.00 0.00 5.01
1998 2152 6.994496 CCTCTCTCTTCATTAAATATGTGCCA 59.006 38.462 0.00 0.00 0.00 4.92
2000 2154 7.497249 ACACCTCTCTCTTCATTAAATATGTGC 59.503 37.037 0.00 0.00 0.00 4.57
2002 2156 9.965902 AAACACCTCTCTCTTCATTAAATATGT 57.034 29.630 0.00 0.00 0.00 2.29
2004 2158 9.965902 ACAAACACCTCTCTCTTCATTAAATAT 57.034 29.630 0.00 0.00 0.00 1.28
2006 2160 7.175641 CCACAAACACCTCTCTCTTCATTAAAT 59.824 37.037 0.00 0.00 0.00 1.40
2008 2162 5.997746 CCACAAACACCTCTCTCTTCATTAA 59.002 40.000 0.00 0.00 0.00 1.40
2009 2163 5.071788 ACCACAAACACCTCTCTCTTCATTA 59.928 40.000 0.00 0.00 0.00 1.90
2010 2164 4.141390 ACCACAAACACCTCTCTCTTCATT 60.141 41.667 0.00 0.00 0.00 2.57
2011 2165 3.392616 ACCACAAACACCTCTCTCTTCAT 59.607 43.478 0.00 0.00 0.00 2.57
2012 2166 2.771943 ACCACAAACACCTCTCTCTTCA 59.228 45.455 0.00 0.00 0.00 3.02
2013 2167 3.477210 ACCACAAACACCTCTCTCTTC 57.523 47.619 0.00 0.00 0.00 2.87
2014 2168 4.409247 AGTTACCACAAACACCTCTCTCTT 59.591 41.667 0.00 0.00 0.00 2.85
2015 2169 3.967987 AGTTACCACAAACACCTCTCTCT 59.032 43.478 0.00 0.00 0.00 3.10
2016 2170 4.338379 AGTTACCACAAACACCTCTCTC 57.662 45.455 0.00 0.00 0.00 3.20
2017 2171 4.262506 GCTAGTTACCACAAACACCTCTCT 60.263 45.833 0.00 0.00 0.00 3.10
2020 2174 4.004196 AGCTAGTTACCACAAACACCTC 57.996 45.455 0.00 0.00 0.00 3.85
2021 2175 5.071384 ACTTAGCTAGTTACCACAAACACCT 59.929 40.000 0.00 0.00 31.29 4.00
2022 2176 5.303165 ACTTAGCTAGTTACCACAAACACC 58.697 41.667 0.00 0.00 31.29 4.16
2033 2187 6.377996 TGATGTTCCGGTAACTTAGCTAGTTA 59.622 38.462 0.00 10.09 45.22 2.24
2035 2189 4.708421 TGATGTTCCGGTAACTTAGCTAGT 59.292 41.667 0.00 0.00 38.99 2.57
2036 2190 5.041940 GTGATGTTCCGGTAACTTAGCTAG 58.958 45.833 0.00 0.00 38.99 3.42
2037 2191 4.463539 TGTGATGTTCCGGTAACTTAGCTA 59.536 41.667 0.00 0.00 38.99 3.32
2038 2192 3.259876 TGTGATGTTCCGGTAACTTAGCT 59.740 43.478 0.00 0.00 38.99 3.32
2039 2193 3.370061 GTGTGATGTTCCGGTAACTTAGC 59.630 47.826 0.00 0.00 38.99 3.09
2040 2194 4.387862 GTGTGTGATGTTCCGGTAACTTAG 59.612 45.833 0.00 0.00 38.99 2.18
2041 2195 4.039488 AGTGTGTGATGTTCCGGTAACTTA 59.961 41.667 0.00 0.00 38.99 2.24
2042 2196 3.135994 GTGTGTGATGTTCCGGTAACTT 58.864 45.455 0.00 3.15 38.99 2.66
2043 2197 2.367567 AGTGTGTGATGTTCCGGTAACT 59.632 45.455 0.00 0.00 38.99 2.24
2044 2198 2.762745 AGTGTGTGATGTTCCGGTAAC 58.237 47.619 0.00 5.56 38.67 2.50
2045 2199 3.181464 TGAAGTGTGTGATGTTCCGGTAA 60.181 43.478 0.00 0.00 0.00 2.85
2046 2200 2.365941 TGAAGTGTGTGATGTTCCGGTA 59.634 45.455 0.00 0.00 0.00 4.02
2047 2201 1.140052 TGAAGTGTGTGATGTTCCGGT 59.860 47.619 0.00 0.00 0.00 5.28
2084 2238 9.549078 TCATGCAACGATGTATTTATTAGGTTA 57.451 29.630 0.00 0.00 28.42 2.85
2085 2239 8.342634 GTCATGCAACGATGTATTTATTAGGTT 58.657 33.333 0.00 0.00 28.42 3.50
2087 2241 7.798516 GTGTCATGCAACGATGTATTTATTAGG 59.201 37.037 0.00 0.00 28.42 2.69
2088 2242 8.551205 AGTGTCATGCAACGATGTATTTATTAG 58.449 33.333 0.00 0.00 28.42 1.73
2089 2243 8.432110 AGTGTCATGCAACGATGTATTTATTA 57.568 30.769 0.00 0.00 28.42 0.98
2090 2244 7.320443 AGTGTCATGCAACGATGTATTTATT 57.680 32.000 0.00 0.00 28.42 1.40
2093 2247 5.641636 TGTAGTGTCATGCAACGATGTATTT 59.358 36.000 0.00 0.00 28.42 1.40
2094 2248 5.175127 TGTAGTGTCATGCAACGATGTATT 58.825 37.500 0.00 0.00 28.42 1.89
2095 2249 4.754322 TGTAGTGTCATGCAACGATGTAT 58.246 39.130 0.00 0.00 31.41 2.29
2096 2250 4.181309 TGTAGTGTCATGCAACGATGTA 57.819 40.909 0.00 0.00 0.00 2.29
2097 2251 3.038788 TGTAGTGTCATGCAACGATGT 57.961 42.857 0.00 0.00 0.00 3.06
2098 2252 5.043248 TCTATGTAGTGTCATGCAACGATG 58.957 41.667 0.00 0.00 0.00 3.84
2099 2253 5.262588 TCTATGTAGTGTCATGCAACGAT 57.737 39.130 0.00 0.00 0.00 3.73
2100 2254 4.712122 TCTATGTAGTGTCATGCAACGA 57.288 40.909 0.00 0.00 0.00 3.85
2101 2255 4.805719 ACATCTATGTAGTGTCATGCAACG 59.194 41.667 0.00 0.00 39.68 4.10
2102 2256 6.238211 GGAACATCTATGTAGTGTCATGCAAC 60.238 42.308 0.00 0.00 40.80 4.17
2103 2257 5.817296 GGAACATCTATGTAGTGTCATGCAA 59.183 40.000 0.00 0.00 40.80 4.08
2104 2258 5.129320 AGGAACATCTATGTAGTGTCATGCA 59.871 40.000 0.00 0.00 40.80 3.96
2106 2260 7.148641 GGTAGGAACATCTATGTAGTGTCATG 58.851 42.308 0.00 0.00 40.80 3.07
2107 2261 6.267928 GGGTAGGAACATCTATGTAGTGTCAT 59.732 42.308 0.00 0.00 40.80 3.06
2108 2262 5.597182 GGGTAGGAACATCTATGTAGTGTCA 59.403 44.000 0.00 0.00 40.80 3.58
2109 2263 5.597182 TGGGTAGGAACATCTATGTAGTGTC 59.403 44.000 0.00 0.00 40.80 3.67
2110 2264 5.363005 GTGGGTAGGAACATCTATGTAGTGT 59.637 44.000 0.00 0.00 40.80 3.55
2112 2266 5.778542 AGTGGGTAGGAACATCTATGTAGT 58.221 41.667 0.00 0.00 40.80 2.73
2114 2268 6.724441 CCATAGTGGGTAGGAACATCTATGTA 59.276 42.308 0.00 0.00 35.14 2.29
2115 2269 5.544176 CCATAGTGGGTAGGAACATCTATGT 59.456 44.000 0.00 0.00 36.83 2.29
2117 2271 5.977533 TCCATAGTGGGTAGGAACATCTAT 58.022 41.667 0.00 0.00 38.32 1.98
2118 2272 5.135533 TCTCCATAGTGGGTAGGAACATCTA 59.864 44.000 0.00 0.00 38.32 1.98
2119 2273 4.078571 TCTCCATAGTGGGTAGGAACATCT 60.079 45.833 0.00 0.00 38.32 2.90
2120 2274 4.223953 TCTCCATAGTGGGTAGGAACATC 58.776 47.826 0.00 0.00 38.32 3.06
2121 2275 4.280789 TCTCCATAGTGGGTAGGAACAT 57.719 45.455 0.00 0.00 38.32 2.71
2122 2276 3.769189 TCTCCATAGTGGGTAGGAACA 57.231 47.619 0.00 0.00 38.32 3.18
2123 2277 5.395611 ACTATCTCCATAGTGGGTAGGAAC 58.604 45.833 0.00 0.00 43.21 3.62
2125 2279 6.103649 TGTTACTATCTCCATAGTGGGTAGGA 59.896 42.308 5.12 0.00 44.33 2.94
2126 2280 6.312529 TGTTACTATCTCCATAGTGGGTAGG 58.687 44.000 5.12 0.00 44.33 3.18
2127 2281 9.179909 CTATGTTACTATCTCCATAGTGGGTAG 57.820 40.741 5.12 0.56 44.33 3.18
2129 2283 7.536625 ACTATGTTACTATCTCCATAGTGGGT 58.463 38.462 9.63 0.00 44.96 4.51
2130 2284 7.891183 AGACTATGTTACTATCTCCATAGTGGG 59.109 40.741 14.01 0.00 46.02 4.61
2134 2288 9.621629 CCCTAGACTATGTTACTATCTCCATAG 57.378 40.741 0.00 0.00 41.50 2.23
2135 2289 9.347777 TCCCTAGACTATGTTACTATCTCCATA 57.652 37.037 0.00 0.00 0.00 2.74
2136 2290 8.233349 TCCCTAGACTATGTTACTATCTCCAT 57.767 38.462 0.00 0.00 0.00 3.41
2137 2291 7.643612 TCCCTAGACTATGTTACTATCTCCA 57.356 40.000 0.00 0.00 0.00 3.86
2138 2292 8.937207 TTTCCCTAGACTATGTTACTATCTCC 57.063 38.462 0.00 0.00 0.00 3.71
2140 2294 9.884814 ACATTTCCCTAGACTATGTTACTATCT 57.115 33.333 0.00 0.00 28.04 1.98
2142 2296 9.435570 ACACATTTCCCTAGACTATGTTACTAT 57.564 33.333 0.00 0.00 29.39 2.12
2143 2297 8.834004 ACACATTTCCCTAGACTATGTTACTA 57.166 34.615 0.00 0.00 29.39 1.82
2144 2298 7.735326 ACACATTTCCCTAGACTATGTTACT 57.265 36.000 0.00 0.00 29.39 2.24
2147 2301 8.147244 ACTTACACATTTCCCTAGACTATGTT 57.853 34.615 0.00 0.00 29.39 2.71
2148 2302 7.735326 ACTTACACATTTCCCTAGACTATGT 57.265 36.000 0.00 0.00 31.07 2.29
2149 2303 9.530633 GTAACTTACACATTTCCCTAGACTATG 57.469 37.037 0.00 0.00 0.00 2.23
2150 2304 9.490083 AGTAACTTACACATTTCCCTAGACTAT 57.510 33.333 1.79 0.00 0.00 2.12
2151 2305 8.890410 AGTAACTTACACATTTCCCTAGACTA 57.110 34.615 1.79 0.00 0.00 2.59
2152 2306 7.793948 AGTAACTTACACATTTCCCTAGACT 57.206 36.000 1.79 0.00 0.00 3.24
2153 2307 7.705752 GCTAGTAACTTACACATTTCCCTAGAC 59.294 40.741 1.79 0.00 0.00 2.59
2154 2308 7.618512 AGCTAGTAACTTACACATTTCCCTAGA 59.381 37.037 1.79 0.00 0.00 2.43
2156 2310 7.729124 AGCTAGTAACTTACACATTTCCCTA 57.271 36.000 1.79 0.00 0.00 3.53
2157 2311 6.622427 AGCTAGTAACTTACACATTTCCCT 57.378 37.500 1.79 0.00 0.00 4.20
2159 2313 9.379791 ACATAAGCTAGTAACTTACACATTTCC 57.620 33.333 1.79 0.00 32.67 3.13
2164 2318 9.419297 CAAGAACATAAGCTAGTAACTTACACA 57.581 33.333 1.79 0.00 32.67 3.72
2165 2319 8.381387 GCAAGAACATAAGCTAGTAACTTACAC 58.619 37.037 1.79 0.00 32.67 2.90
2166 2320 7.548075 GGCAAGAACATAAGCTAGTAACTTACA 59.452 37.037 1.79 0.00 32.67 2.41
2167 2321 7.011202 GGGCAAGAACATAAGCTAGTAACTTAC 59.989 40.741 0.00 0.00 32.67 2.34
2169 2323 5.880887 GGGCAAGAACATAAGCTAGTAACTT 59.119 40.000 0.00 0.00 0.00 2.66
2170 2324 5.045869 TGGGCAAGAACATAAGCTAGTAACT 60.046 40.000 0.00 0.00 0.00 2.24
2171 2325 5.183228 TGGGCAAGAACATAAGCTAGTAAC 58.817 41.667 0.00 0.00 0.00 2.50
2172 2326 5.429681 TGGGCAAGAACATAAGCTAGTAA 57.570 39.130 0.00 0.00 0.00 2.24
2173 2327 5.630415 ATGGGCAAGAACATAAGCTAGTA 57.370 39.130 0.00 0.00 0.00 1.82
2174 2328 4.510167 ATGGGCAAGAACATAAGCTAGT 57.490 40.909 0.00 0.00 0.00 2.57
2176 2330 4.398988 CACAATGGGCAAGAACATAAGCTA 59.601 41.667 0.00 0.00 0.00 3.32
2177 2331 3.194116 CACAATGGGCAAGAACATAAGCT 59.806 43.478 0.00 0.00 0.00 3.74
2178 2332 3.193267 TCACAATGGGCAAGAACATAAGC 59.807 43.478 0.00 0.00 0.00 3.09
2179 2333 4.380867 GGTCACAATGGGCAAGAACATAAG 60.381 45.833 0.00 0.00 0.00 1.73
2181 2335 3.088532 GGTCACAATGGGCAAGAACATA 58.911 45.455 0.00 0.00 0.00 2.29
2182 2336 1.895131 GGTCACAATGGGCAAGAACAT 59.105 47.619 0.00 0.00 0.00 2.71
2183 2337 1.327303 GGTCACAATGGGCAAGAACA 58.673 50.000 0.00 0.00 0.00 3.18
2186 2340 0.895100 GCTGGTCACAATGGGCAAGA 60.895 55.000 0.00 0.00 0.00 3.02
2188 2342 0.469705 AAGCTGGTCACAATGGGCAA 60.470 50.000 0.00 0.00 0.00 4.52
2189 2343 0.469705 AAAGCTGGTCACAATGGGCA 60.470 50.000 0.00 0.00 0.00 5.36
2190 2344 1.544724 TAAAGCTGGTCACAATGGGC 58.455 50.000 0.00 0.00 0.00 5.36
2192 2346 3.763360 TCCATTAAAGCTGGTCACAATGG 59.237 43.478 15.41 15.41 42.38 3.16
2193 2347 5.183713 TCTTCCATTAAAGCTGGTCACAATG 59.816 40.000 0.00 0.00 35.19 2.82
2194 2348 5.324409 TCTTCCATTAAAGCTGGTCACAAT 58.676 37.500 0.00 0.00 35.19 2.71
2195 2349 4.724399 TCTTCCATTAAAGCTGGTCACAA 58.276 39.130 0.00 0.00 35.19 3.33
2196 2350 4.365514 TCTTCCATTAAAGCTGGTCACA 57.634 40.909 0.00 0.00 35.19 3.58
2198 2352 4.706476 CCATTCTTCCATTAAAGCTGGTCA 59.294 41.667 0.00 0.00 35.19 4.02
2200 2354 4.934356 TCCATTCTTCCATTAAAGCTGGT 58.066 39.130 0.00 0.00 33.74 4.00
2251 2972 5.560760 CGAACGGTACCATATAGCTAACGAA 60.561 44.000 13.54 0.00 0.00 3.85
2252 2973 4.083855 CGAACGGTACCATATAGCTAACGA 60.084 45.833 13.54 0.00 0.00 3.85
2253 2974 4.153986 CGAACGGTACCATATAGCTAACG 58.846 47.826 13.54 0.00 0.00 3.18
2254 2975 5.113502 ACGAACGGTACCATATAGCTAAC 57.886 43.478 13.54 0.00 0.00 2.34
2310 3031 7.439157 TGTATCTTCAAAAGGATGACAGTTG 57.561 36.000 0.00 0.00 33.05 3.16
2358 3079 2.285977 GACCCACCAAACGCTATTAGG 58.714 52.381 0.00 0.00 0.00 2.69
2399 3120 1.915141 TTTCCGGACGAAGGAGTACT 58.085 50.000 1.83 0.00 39.22 2.73
2400 3121 2.955477 ATTTCCGGACGAAGGAGTAC 57.045 50.000 1.83 0.00 39.22 2.73
2401 3122 3.624777 AGTATTTCCGGACGAAGGAGTA 58.375 45.455 1.83 0.00 39.22 2.59
2402 3123 2.454538 AGTATTTCCGGACGAAGGAGT 58.545 47.619 1.83 0.00 39.22 3.85
2403 3124 3.187700 CAAGTATTTCCGGACGAAGGAG 58.812 50.000 1.83 0.00 39.22 3.69
2404 3125 2.564062 ACAAGTATTTCCGGACGAAGGA 59.436 45.455 1.83 0.00 35.69 3.36
2405 3126 2.928116 GACAAGTATTTCCGGACGAAGG 59.072 50.000 1.83 0.00 0.00 3.46
2406 3127 3.367025 GTGACAAGTATTTCCGGACGAAG 59.633 47.826 1.83 0.00 0.00 3.79
2407 3128 3.319755 GTGACAAGTATTTCCGGACGAA 58.680 45.455 1.83 0.00 0.00 3.85
2408 3129 2.669113 CGTGACAAGTATTTCCGGACGA 60.669 50.000 1.83 0.00 0.00 4.20
2409 3130 1.652124 CGTGACAAGTATTTCCGGACG 59.348 52.381 1.83 0.00 0.00 4.79
2410 3131 2.950433 TCGTGACAAGTATTTCCGGAC 58.050 47.619 1.83 0.00 0.00 4.79
2411 3132 3.663995 TTCGTGACAAGTATTTCCGGA 57.336 42.857 0.00 0.00 0.00 5.14
2412 3133 4.735662 TTTTCGTGACAAGTATTTCCGG 57.264 40.909 0.00 0.00 0.00 5.14
2413 3134 5.086058 CCATTTTCGTGACAAGTATTTCCG 58.914 41.667 0.00 0.00 0.00 4.30
2414 3135 5.048294 ACCCATTTTCGTGACAAGTATTTCC 60.048 40.000 0.00 0.00 0.00 3.13
2415 3136 5.856455 CACCCATTTTCGTGACAAGTATTTC 59.144 40.000 0.00 0.00 31.36 2.17
2416 3137 5.300792 ACACCCATTTTCGTGACAAGTATTT 59.699 36.000 0.00 0.00 34.05 1.40
2417 3138 4.825085 ACACCCATTTTCGTGACAAGTATT 59.175 37.500 0.00 0.00 34.05 1.89
2418 3139 4.394729 ACACCCATTTTCGTGACAAGTAT 58.605 39.130 0.00 0.00 34.05 2.12
2419 3140 3.811083 ACACCCATTTTCGTGACAAGTA 58.189 40.909 0.00 0.00 34.05 2.24
2420 3141 2.650322 ACACCCATTTTCGTGACAAGT 58.350 42.857 0.00 0.00 34.05 3.16
2421 3142 4.695455 AGATACACCCATTTTCGTGACAAG 59.305 41.667 0.00 0.00 34.05 3.16
2422 3143 4.647611 AGATACACCCATTTTCGTGACAA 58.352 39.130 0.00 0.00 34.05 3.18
2423 3144 4.280436 AGATACACCCATTTTCGTGACA 57.720 40.909 0.00 0.00 34.05 3.58
2424 3145 5.519206 GTCTAGATACACCCATTTTCGTGAC 59.481 44.000 0.00 0.00 34.05 3.67
2425 3146 5.186215 TGTCTAGATACACCCATTTTCGTGA 59.814 40.000 0.00 0.00 34.05 4.35
2426 3147 5.416083 TGTCTAGATACACCCATTTTCGTG 58.584 41.667 0.00 0.00 36.04 4.35
2427 3148 5.670792 TGTCTAGATACACCCATTTTCGT 57.329 39.130 0.00 0.00 0.00 3.85
2428 3149 8.833231 AATATGTCTAGATACACCCATTTTCG 57.167 34.615 0.00 0.00 30.75 3.46
2464 3185 9.859427 CGCATAAATGGATAAAAATGGATGTAT 57.141 29.630 0.00 0.00 0.00 2.29
2465 3186 9.072375 TCGCATAAATGGATAAAAATGGATGTA 57.928 29.630 0.00 0.00 0.00 2.29
2466 3187 7.867403 GTCGCATAAATGGATAAAAATGGATGT 59.133 33.333 0.00 0.00 0.00 3.06
2467 3188 7.866898 TGTCGCATAAATGGATAAAAATGGATG 59.133 33.333 0.00 0.00 0.00 3.51
2468 3189 7.950512 TGTCGCATAAATGGATAAAAATGGAT 58.049 30.769 0.00 0.00 0.00 3.41
2469 3190 7.340122 TGTCGCATAAATGGATAAAAATGGA 57.660 32.000 0.00 0.00 0.00 3.41
2470 3191 7.706179 ACTTGTCGCATAAATGGATAAAAATGG 59.294 33.333 0.00 0.00 0.00 3.16
2471 3192 8.633075 ACTTGTCGCATAAATGGATAAAAATG 57.367 30.769 0.00 0.00 0.00 2.32
2475 3196 9.944663 GAAATACTTGTCGCATAAATGGATAAA 57.055 29.630 0.00 0.00 0.00 1.40
2476 3197 9.337396 AGAAATACTTGTCGCATAAATGGATAA 57.663 29.630 0.00 0.00 0.00 1.75
2477 3198 8.773645 CAGAAATACTTGTCGCATAAATGGATA 58.226 33.333 0.00 0.00 0.00 2.59
2478 3199 7.255242 CCAGAAATACTTGTCGCATAAATGGAT 60.255 37.037 0.00 0.00 0.00 3.41
2479 3200 6.038161 CCAGAAATACTTGTCGCATAAATGGA 59.962 38.462 0.00 0.00 0.00 3.41
2480 3201 6.038161 TCCAGAAATACTTGTCGCATAAATGG 59.962 38.462 0.00 0.00 0.00 3.16
2481 3202 6.907212 GTCCAGAAATACTTGTCGCATAAATG 59.093 38.462 0.00 0.00 0.00 2.32
2482 3203 6.238103 CGTCCAGAAATACTTGTCGCATAAAT 60.238 38.462 0.00 0.00 0.00 1.40
2483 3204 5.062934 CGTCCAGAAATACTTGTCGCATAAA 59.937 40.000 0.00 0.00 0.00 1.40
2484 3205 4.565166 CGTCCAGAAATACTTGTCGCATAA 59.435 41.667 0.00 0.00 0.00 1.90
2485 3206 4.109766 CGTCCAGAAATACTTGTCGCATA 58.890 43.478 0.00 0.00 0.00 3.14
2486 3207 2.930040 CGTCCAGAAATACTTGTCGCAT 59.070 45.455 0.00 0.00 0.00 4.73
2487 3208 2.333926 CGTCCAGAAATACTTGTCGCA 58.666 47.619 0.00 0.00 0.00 5.10
2488 3209 1.659098 CCGTCCAGAAATACTTGTCGC 59.341 52.381 0.00 0.00 0.00 5.19
2489 3210 3.179830 CTCCGTCCAGAAATACTTGTCG 58.820 50.000 0.00 0.00 0.00 4.35
2490 3211 3.522553 CCTCCGTCCAGAAATACTTGTC 58.477 50.000 0.00 0.00 0.00 3.18
2491 3212 2.236395 CCCTCCGTCCAGAAATACTTGT 59.764 50.000 0.00 0.00 0.00 3.16
2492 3213 2.500098 TCCCTCCGTCCAGAAATACTTG 59.500 50.000 0.00 0.00 0.00 3.16
2493 3214 2.766828 CTCCCTCCGTCCAGAAATACTT 59.233 50.000 0.00 0.00 0.00 2.24
2494 3215 2.292323 ACTCCCTCCGTCCAGAAATACT 60.292 50.000 0.00 0.00 0.00 2.12
2495 3216 2.108970 ACTCCCTCCGTCCAGAAATAC 58.891 52.381 0.00 0.00 0.00 1.89
2496 3217 2.544844 ACTCCCTCCGTCCAGAAATA 57.455 50.000 0.00 0.00 0.00 1.40
2497 3218 2.544844 TACTCCCTCCGTCCAGAAAT 57.455 50.000 0.00 0.00 0.00 2.17
2498 3219 2.544844 ATACTCCCTCCGTCCAGAAA 57.455 50.000 0.00 0.00 0.00 2.52
2499 3220 3.053095 ACTTATACTCCCTCCGTCCAGAA 60.053 47.826 0.00 0.00 0.00 3.02
2500 3221 2.512896 ACTTATACTCCCTCCGTCCAGA 59.487 50.000 0.00 0.00 0.00 3.86
2501 3222 2.946785 ACTTATACTCCCTCCGTCCAG 58.053 52.381 0.00 0.00 0.00 3.86
2502 3223 3.393426 AACTTATACTCCCTCCGTCCA 57.607 47.619 0.00 0.00 0.00 4.02
2503 3224 3.740452 GCAAACTTATACTCCCTCCGTCC 60.740 52.174 0.00 0.00 0.00 4.79
2504 3225 3.118884 TGCAAACTTATACTCCCTCCGTC 60.119 47.826 0.00 0.00 0.00 4.79
2505 3226 2.835764 TGCAAACTTATACTCCCTCCGT 59.164 45.455 0.00 0.00 0.00 4.69
2506 3227 3.118738 ACTGCAAACTTATACTCCCTCCG 60.119 47.826 0.00 0.00 0.00 4.63
2507 3228 4.489306 ACTGCAAACTTATACTCCCTCC 57.511 45.455 0.00 0.00 0.00 4.30
2508 3229 6.819397 AAAACTGCAAACTTATACTCCCTC 57.181 37.500 0.00 0.00 0.00 4.30
2509 3230 7.393515 CCTTAAAACTGCAAACTTATACTCCCT 59.606 37.037 0.00 0.00 0.00 4.20
2510 3231 7.362660 CCCTTAAAACTGCAAACTTATACTCCC 60.363 40.741 0.00 0.00 0.00 4.30
2511 3232 7.362660 CCCCTTAAAACTGCAAACTTATACTCC 60.363 40.741 0.00 0.00 0.00 3.85
2512 3233 7.535997 CCCCTTAAAACTGCAAACTTATACTC 58.464 38.462 0.00 0.00 0.00 2.59
2526 3247 4.993028 TGACATTGTAGCCCCTTAAAACT 58.007 39.130 0.00 0.00 0.00 2.66
2670 3394 1.068474 ACACGAAGTATGCAGCGAAC 58.932 50.000 0.00 0.00 41.61 3.95
2822 3546 3.217626 CCTGCAAGAACAAGAGAAACCT 58.782 45.455 0.00 0.00 34.07 3.50
2965 3689 2.727544 GCGAGGCAAACAAAGGCA 59.272 55.556 0.00 0.00 0.00 4.75
3092 3816 4.787551 AGAACCAAATGGACTGTACAACA 58.212 39.130 6.42 0.00 38.94 3.33
3245 3978 7.414429 GCAATAATCATTTGAGCACACACTCTA 60.414 37.037 0.00 0.00 37.58 2.43
3267 4000 5.217978 ACACACATTCCTTGATTTGCAAT 57.782 34.783 0.00 0.00 35.59 3.56
3304 4037 6.093357 TGCTATGAACATAATCTTCGCAACAA 59.907 34.615 0.00 0.00 0.00 2.83
3357 4090 6.808008 AATGCACTCATATACTTGTATGCC 57.192 37.500 0.00 0.00 33.15 4.40
3464 4197 2.740447 GGTAAACACCGAGCCAACTTAG 59.260 50.000 0.00 0.00 0.00 2.18
3638 4371 7.666388 TGAGTAGGAGTATCTAGATTAAGCCAC 59.334 40.741 11.25 1.60 33.73 5.01
3645 4378 9.515226 GTCATCTTGAGTAGGAGTATCTAGATT 57.485 37.037 11.25 0.00 34.67 2.40
3653 4386 4.452825 CGAGGTCATCTTGAGTAGGAGTA 58.547 47.826 0.00 0.00 0.00 2.59
3786 4519 7.386299 GCAATGTTGTATTGGTATTGGTTTCAA 59.614 33.333 0.00 0.00 37.28 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.