Multiple sequence alignment - TraesCS1B01G213200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G213200 chr1B 100.000 6764 0 0 1 6764 387297392 387304155 0.000000e+00 12491.0
1 TraesCS1B01G213200 chr1B 85.749 2049 182 57 2651 4622 539129965 539131980 0.000000e+00 2065.0
2 TraesCS1B01G213200 chr1B 85.841 1688 172 28 2246 3868 247436017 247434332 0.000000e+00 1731.0
3 TraesCS1B01G213200 chr1B 89.642 1284 110 6 3354 4616 529504749 529506030 0.000000e+00 1613.0
4 TraesCS1B01G213200 chr1B 85.936 1543 165 25 3111 4616 348801271 348802798 0.000000e+00 1600.0
5 TraesCS1B01G213200 chr1B 92.748 717 52 0 3900 4616 247426785 247426069 0.000000e+00 1037.0
6 TraesCS1B01G213200 chr1B 82.975 605 63 26 2244 2812 348800336 348800936 1.680000e-140 510.0
7 TraesCS1B01G213200 chr1B 87.073 410 24 4 2164 2544 211329259 211328850 2.900000e-118 436.0
8 TraesCS1B01G213200 chr1B 84.397 423 36 9 2244 2649 288957880 288957471 8.230000e-104 388.0
9 TraesCS1B01G213200 chr1B 99.000 100 1 0 2163 2262 348800281 348800380 5.390000e-41 180.0
10 TraesCS1B01G213200 chr1B 98.990 99 1 0 2164 2262 348802436 348802534 1.940000e-40 178.0
11 TraesCS1B01G213200 chr1B 91.525 59 5 0 2849 2907 402111695 402111637 1.560000e-11 82.4
12 TraesCS1B01G213200 chr1A 94.755 2040 85 13 4740 6764 356470069 356472101 0.000000e+00 3155.0
13 TraesCS1B01G213200 chr1A 93.864 440 20 6 1699 2134 356468138 356468574 0.000000e+00 656.0
14 TraesCS1B01G213200 chr1A 88.821 492 22 13 1210 1686 356467682 356468155 2.120000e-159 573.0
15 TraesCS1B01G213200 chr1A 79.661 236 42 6 647 878 561681846 561682079 1.510000e-36 165.0
16 TraesCS1B01G213200 chr1A 97.826 46 1 0 4702 4747 356468630 356468675 5.620000e-11 80.5
17 TraesCS1B01G213200 chr6B 88.116 2112 153 45 2244 4262 657114770 657112664 0.000000e+00 2420.0
18 TraesCS1B01G213200 chr6B 88.590 1262 123 7 3376 4616 599811362 599810101 0.000000e+00 1513.0
19 TraesCS1B01G213200 chr6B 87.234 423 35 11 2244 2649 538371348 538371768 1.330000e-126 464.0
20 TraesCS1B01G213200 chr6B 82.490 257 37 8 2 254 564085709 564085961 1.140000e-52 219.0
21 TraesCS1B01G213200 chr3B 85.423 2401 198 62 2338 4618 181306041 181308409 0.000000e+00 2355.0
22 TraesCS1B01G213200 chr3B 90.442 1266 107 4 3364 4616 284383596 284384860 0.000000e+00 1655.0
23 TraesCS1B01G213200 chr3B 90.090 1221 98 10 3417 4616 565431564 565430346 0.000000e+00 1563.0
24 TraesCS1B01G213200 chr3B 83.477 1041 94 30 2337 3336 354027925 354026922 0.000000e+00 898.0
25 TraesCS1B01G213200 chr3B 84.150 612 63 19 2227 2813 565432872 565432270 4.580000e-156 562.0
26 TraesCS1B01G213200 chr3B 82.867 607 59 23 2244 2814 284382295 284382892 2.820000e-138 503.0
27 TraesCS1B01G213200 chr3B 93.204 309 13 1 2244 2544 565430654 565430346 1.340000e-121 448.0
28 TraesCS1B01G213200 chr3B 86.517 89 10 2 4610 4697 672075599 672075512 5.580000e-16 97.1
29 TraesCS1B01G213200 chr5B 91.271 1707 104 13 2244 3905 386334896 386333190 0.000000e+00 2285.0
30 TraesCS1B01G213200 chr5B 92.203 513 39 1 1 512 288076219 288076731 0.000000e+00 725.0
31 TraesCS1B01G213200 chr5B 87.411 421 36 9 2244 2649 102394655 102395073 1.030000e-127 468.0
32 TraesCS1B01G213200 chr5B 87.234 423 35 8 2244 2649 511367377 511367797 1.330000e-126 464.0
33 TraesCS1B01G213200 chr5B 81.549 607 69 25 2244 2813 645537589 645536989 1.720000e-125 460.0
34 TraesCS1B01G213200 chr5B 91.586 309 18 1 2244 2544 645535356 645535048 2.920000e-113 420.0
35 TraesCS1B01G213200 chr5B 87.135 171 22 0 708 878 311191743 311191913 1.920000e-45 195.0
36 TraesCS1B01G213200 chr5B 97.059 102 3 0 2163 2264 386334951 386334850 9.020000e-39 172.0
37 TraesCS1B01G213200 chr5B 96.970 99 3 0 2164 2262 328204415 328204317 4.200000e-37 167.0
38 TraesCS1B01G213200 chr5B 76.871 147 32 2 2766 2911 461826443 461826298 1.560000e-11 82.4
39 TraesCS1B01G213200 chr2A 84.951 2359 215 76 2338 4620 690310987 690313281 0.000000e+00 2261.0
40 TraesCS1B01G213200 chr2A 86.946 1670 156 20 2651 4269 736024847 736023189 0.000000e+00 1820.0
41 TraesCS1B01G213200 chr2A 92.453 53 4 0 4617 4669 125205750 125205698 7.270000e-10 76.8
42 TraesCS1B01G213200 chr3D 86.506 2038 190 39 2633 4617 532111263 532113268 0.000000e+00 2161.0
43 TraesCS1B01G213200 chr3D 84.269 2333 200 84 2338 4596 246589468 246591707 0.000000e+00 2121.0
44 TraesCS1B01G213200 chr3D 87.938 257 17 7 2337 2581 571620146 571620400 2.390000e-74 291.0
45 TraesCS1B01G213200 chr3D 86.179 246 24 3 2346 2582 45007166 45007410 2.420000e-64 257.0
46 TraesCS1B01G213200 chr3D 83.590 195 27 4 691 881 13700396 13700203 1.940000e-40 178.0
47 TraesCS1B01G213200 chr3D 79.851 268 30 15 628 882 614078363 614078619 2.510000e-39 174.0
48 TraesCS1B01G213200 chr3D 86.667 75 9 1 4624 4698 556857871 556857944 1.560000e-11 82.4
49 TraesCS1B01G213200 chr3D 100.000 40 0 0 33 72 90191504 90191465 2.620000e-09 75.0
50 TraesCS1B01G213200 chr3D 100.000 40 0 0 33 72 285733727 285733688 2.620000e-09 75.0
51 TraesCS1B01G213200 chr4D 82.626 2521 251 94 2164 4617 408807775 408805375 0.000000e+00 2056.0
52 TraesCS1B01G213200 chr4D 84.906 795 80 31 107 881 37257601 37256827 0.000000e+00 767.0
53 TraesCS1B01G213200 chr4D 82.121 811 84 38 123 878 291659464 291660268 7.400000e-179 638.0
54 TraesCS1B01G213200 chr4D 79.960 504 57 24 2164 2653 417678045 417677572 1.410000e-86 331.0
55 TraesCS1B01G213200 chr4D 75.934 669 101 37 2166 2812 104841128 104840498 8.580000e-74 289.0
56 TraesCS1B01G213200 chr4D 90.783 217 16 3 2375 2590 509029318 509029531 3.090000e-73 287.0
57 TraesCS1B01G213200 chr4D 89.862 217 13 2 2337 2545 260720870 260721085 3.110000e-68 270.0
58 TraesCS1B01G213200 chr4D 89.252 214 14 2 2341 2546 375385722 375385510 6.730000e-65 259.0
59 TraesCS1B01G213200 chr4D 88.479 217 16 3 2337 2545 509030946 509031161 3.130000e-63 254.0
60 TraesCS1B01G213200 chr4D 78.450 413 46 24 2238 2621 103955002 103954604 5.280000e-56 230.0
61 TraesCS1B01G213200 chr4D 77.525 396 46 21 2164 2545 104838954 104838588 1.490000e-46 198.0
62 TraesCS1B01G213200 chr4D 88.415 164 17 2 2651 2813 417677492 417677330 5.350000e-46 196.0
63 TraesCS1B01G213200 chr4D 86.441 177 2 6 2244 2399 385729603 385729428 2.510000e-39 174.0
64 TraesCS1B01G213200 chr4D 89.231 130 14 0 749 878 338369761 338369890 5.430000e-36 163.0
65 TraesCS1B01G213200 chr4D 94.231 104 4 2 2161 2263 274462305 274462407 2.530000e-34 158.0
66 TraesCS1B01G213200 chr4D 95.833 96 3 1 2162 2257 260720740 260720834 3.270000e-33 154.0
67 TraesCS1B01G213200 chr4D 94.059 101 4 2 2164 2263 274464218 274464317 1.170000e-32 152.0
68 TraesCS1B01G213200 chr4D 94.059 101 4 2 2164 2263 390848447 390848348 1.170000e-32 152.0
69 TraesCS1B01G213200 chr4D 93.939 99 4 2 2166 2263 448524161 448524258 1.520000e-31 148.0
70 TraesCS1B01G213200 chr4B 94.057 1363 59 4 3287 4627 389112136 389110774 0.000000e+00 2049.0
71 TraesCS1B01G213200 chr4B 89.330 1284 108 10 3362 4624 89523139 89524414 0.000000e+00 1585.0
72 TraesCS1B01G213200 chr4B 85.501 669 72 16 2163 2813 89521437 89522098 0.000000e+00 675.0
73 TraesCS1B01G213200 chr4B 86.957 598 34 20 2244 2797 389112728 389112131 3.440000e-177 632.0
74 TraesCS1B01G213200 chr4B 94.175 309 10 1 2244 2544 389111094 389110786 1.330000e-126 464.0
75 TraesCS1B01G213200 chr4B 85.106 423 43 11 2244 2649 11679622 11679203 1.360000e-111 414.0
76 TraesCS1B01G213200 chr4B 90.939 309 16 3 2244 2544 89524103 89524407 8.170000e-109 405.0
77 TraesCS1B01G213200 chr4B 77.333 600 90 31 2244 2813 285613525 285614108 5.090000e-81 313.0
78 TraesCS1B01G213200 chr4B 87.069 232 13 7 2244 2463 285615957 285616183 5.240000e-61 246.0
79 TraesCS1B01G213200 chr4B 99.000 100 1 0 2163 2262 285613470 285613569 5.390000e-41 180.0
80 TraesCS1B01G213200 chr4B 98.058 103 2 0 2160 2262 389112786 389112684 5.390000e-41 180.0
81 TraesCS1B01G213200 chr4B 98.990 99 1 0 2164 2262 389111148 389111050 1.940000e-40 178.0
82 TraesCS1B01G213200 chr4B 80.000 250 37 11 639 882 190196197 190196439 9.020000e-39 172.0
83 TraesCS1B01G213200 chr4B 97.980 99 2 0 2164 2262 285615903 285616001 9.020000e-39 172.0
84 TraesCS1B01G213200 chr4B 96.970 99 3 0 2164 2262 89524049 89524147 4.200000e-37 167.0
85 TraesCS1B01G213200 chr4B 94.118 102 4 2 2163 2263 61519959 61519859 3.270000e-33 154.0
86 TraesCS1B01G213200 chr4B 81.746 126 17 4 2786 2908 324354009 324354131 4.320000e-17 100.0
87 TraesCS1B01G213200 chr4B 76.923 130 28 2 2780 2908 546134054 546134182 9.410000e-09 73.1
88 TraesCS1B01G213200 chr7B 85.444 2006 206 49 2651 4607 285436385 285438353 0.000000e+00 2008.0
89 TraesCS1B01G213200 chr7B 92.453 1325 78 6 3313 4617 23634710 23636032 0.000000e+00 1873.0
90 TraesCS1B01G213200 chr7B 86.257 764 52 20 2597 3317 23611121 23611874 0.000000e+00 780.0
91 TraesCS1B01G213200 chr7B 90.675 504 20 9 2164 2641 23606238 23606740 0.000000e+00 645.0
92 TraesCS1B01G213200 chr7B 92.233 309 15 2 2244 2544 23635724 23636031 4.850000e-116 429.0
93 TraesCS1B01G213200 chr7B 81.132 265 39 8 624 881 449818913 449818653 1.150000e-47 202.0
94 TraesCS1B01G213200 chr7B 98.990 99 1 0 2164 2262 23635670 23635768 1.940000e-40 178.0
95 TraesCS1B01G213200 chr1D 83.156 2256 214 82 2448 4616 228810067 228812243 0.000000e+00 1908.0
96 TraesCS1B01G213200 chr1D 89.291 1466 110 20 2912 4337 321680478 321681936 0.000000e+00 1794.0
97 TraesCS1B01G213200 chr1D 92.936 1175 58 15 4693 5855 285051268 285052429 0.000000e+00 1687.0
98 TraesCS1B01G213200 chr1D 91.722 906 44 15 5873 6764 285052418 285053306 0.000000e+00 1229.0
99 TraesCS1B01G213200 chr1D 87.687 536 23 22 1089 1618 285050089 285050587 9.780000e-163 584.0
100 TraesCS1B01G213200 chr1D 82.741 591 60 24 2244 2812 493214391 493214961 7.880000e-134 488.0
101 TraesCS1B01G213200 chr1D 88.148 405 32 6 1700 2102 285050593 285050983 1.030000e-127 468.0
102 TraesCS1B01G213200 chr1D 93.204 309 13 2 2244 2544 493216854 493217162 1.340000e-121 448.0
103 TraesCS1B01G213200 chr1D 86.288 423 39 10 2244 2649 208423543 208423963 6.230000e-120 442.0
104 TraesCS1B01G213200 chr1D 88.933 253 17 4 2337 2580 247517334 247517084 1.100000e-77 302.0
105 TraesCS1B01G213200 chr1D 89.908 218 13 2 2337 2546 448644028 448643812 8.640000e-69 272.0
106 TraesCS1B01G213200 chr1D 89.474 209 20 2 2375 2582 30563397 30563190 5.200000e-66 263.0
107 TraesCS1B01G213200 chr1D 77.938 485 61 28 2338 2789 321679587 321680058 1.870000e-65 261.0
108 TraesCS1B01G213200 chr1D 78.487 423 58 21 2244 2649 226417132 226417538 5.240000e-61 246.0
109 TraesCS1B01G213200 chr1D 85.281 231 34 0 2 232 247368039 247368269 8.770000e-59 239.0
110 TraesCS1B01G213200 chr1D 86.413 184 25 0 1 184 125755947 125756130 1.150000e-47 202.0
111 TraesCS1B01G213200 chr1D 87.500 160 16 4 721 878 247368900 247369057 1.500000e-41 182.0
112 TraesCS1B01G213200 chr1D 87.349 166 9 4 2244 2399 140045683 140045520 5.390000e-41 180.0
113 TraesCS1B01G213200 chr1D 97.980 99 2 0 2164 2262 493214337 493214435 9.020000e-39 172.0
114 TraesCS1B01G213200 chr1D 85.161 155 21 2 728 881 27549260 27549107 2.530000e-34 158.0
115 TraesCS1B01G213200 chr1D 94.059 101 4 2 2164 2263 98830779 98830680 1.170000e-32 152.0
116 TraesCS1B01G213200 chr1D 94.059 101 4 2 2164 2263 247515532 247515433 1.170000e-32 152.0
117 TraesCS1B01G213200 chr1D 94.059 101 4 2 2164 2263 247517462 247517363 1.170000e-32 152.0
118 TraesCS1B01G213200 chr1D 84.564 149 22 1 730 878 417906908 417907055 5.470000e-31 147.0
119 TraesCS1B01G213200 chr1D 84.962 133 20 0 749 881 152485152 152485020 1.180000e-27 135.0
120 TraesCS1B01G213200 chr1D 93.902 82 5 0 4617 4698 436214096 436214015 2.560000e-24 124.0
121 TraesCS1B01G213200 chr1D 100.000 30 0 0 2103 2132 285051243 285051272 1.000000e-03 56.5
122 TraesCS1B01G213200 chr1D 96.875 32 1 0 4667 4698 492984685 492984716 3.000000e-03 54.7
123 TraesCS1B01G213200 chr3A 83.846 2049 213 46 2633 4616 17731146 17733141 0.000000e+00 1842.0
124 TraesCS1B01G213200 chr3A 80.669 269 44 8 614 878 35064315 35064051 1.150000e-47 202.0
125 TraesCS1B01G213200 chr7D 89.920 1379 112 14 2900 4268 459423248 459421887 0.000000e+00 1751.0
126 TraesCS1B01G213200 chr7D 86.061 330 26 7 2337 2649 443125440 443125766 3.020000e-88 337.0
127 TraesCS1B01G213200 chr7D 76.613 620 78 31 2244 2812 336161142 336161745 5.170000e-71 279.0
128 TraesCS1B01G213200 chr7D 80.263 304 31 15 2244 2535 222146184 222146470 1.150000e-47 202.0
129 TraesCS1B01G213200 chr7D 79.299 314 39 14 2244 2545 477113543 477113842 5.350000e-46 196.0
130 TraesCS1B01G213200 chr7D 80.189 212 21 14 2620 2813 599068333 599068541 9.150000e-29 139.0
131 TraesCS1B01G213200 chr7D 91.667 72 6 0 1 72 155253219 155253290 4.320000e-17 100.0
132 TraesCS1B01G213200 chr7D 100.000 40 0 0 33 72 18855542 18855581 2.620000e-09 75.0
133 TraesCS1B01G213200 chr7A 82.069 1305 127 46 2338 3551 62487976 62489264 0.000000e+00 1014.0
134 TraesCS1B01G213200 chr7A 85.356 519 49 15 2 514 310897596 310898093 4.680000e-141 512.0
135 TraesCS1B01G213200 chr7A 80.816 490 62 16 2337 2813 43053160 43052690 8.340000e-94 355.0
136 TraesCS1B01G213200 chr5A 81.314 883 104 37 50 883 423921371 423922241 0.000000e+00 660.0
137 TraesCS1B01G213200 chr5A 84.356 326 36 5 2337 2648 8804999 8805323 8.520000e-79 305.0
138 TraesCS1B01G213200 chr5A 86.166 253 33 2 2 254 44923210 44923460 8.640000e-69 272.0
139 TraesCS1B01G213200 chr6D 85.128 390 31 11 2164 2544 212483781 212483410 2.300000e-99 374.0
140 TraesCS1B01G213200 chr6D 77.061 667 80 39 2161 2813 132050288 132050895 3.940000e-82 316.0
141 TraesCS1B01G213200 chr6D 88.142 253 21 2 2338 2582 11440717 11440466 6.630000e-75 292.0
142 TraesCS1B01G213200 chr6D 75.907 689 93 44 2162 2813 100355106 100354454 1.110000e-72 285.0
143 TraesCS1B01G213200 chr6D 76.557 610 83 40 2244 2810 235770339 235770931 5.170000e-71 279.0
144 TraesCS1B01G213200 chr6D 76.342 596 90 31 2244 2813 200482756 200483326 8.640000e-69 272.0
145 TraesCS1B01G213200 chr6D 89.401 217 14 2 2337 2545 11438744 11438529 1.450000e-66 265.0
146 TraesCS1B01G213200 chr6D 77.975 395 40 26 2164 2544 132052748 132053109 3.200000e-48 204.0
147 TraesCS1B01G213200 chr6D 76.640 381 52 21 2164 2535 200484849 200485201 6.970000e-40 176.0
148 TraesCS1B01G213200 chr6D 84.158 202 4 7 2225 2399 100352872 100352672 3.240000e-38 171.0
149 TraesCS1B01G213200 chr6D 82.629 213 18 10 2163 2373 448378638 448378833 3.240000e-38 171.0
150 TraesCS1B01G213200 chr6D 94.059 101 4 2 2164 2263 211666161 211666062 1.170000e-32 152.0
151 TraesCS1B01G213200 chr6D 94.059 101 4 2 2164 2263 461308666 461308567 1.170000e-32 152.0
152 TraesCS1B01G213200 chr6D 93.204 103 5 2 2162 2263 461315007 461314906 4.230000e-32 150.0
153 TraesCS1B01G213200 chr6D 93.069 101 5 2 2164 2263 11438872 11438773 5.470000e-31 147.0
154 TraesCS1B01G213200 chr6D 91.089 101 7 2 2164 2263 11440846 11440747 1.180000e-27 135.0
155 TraesCS1B01G213200 chr6D 80.000 180 28 7 2449 2624 91840788 91840613 7.120000e-25 126.0
156 TraesCS1B01G213200 chrUn 79.724 434 48 21 2164 2586 293109898 293109494 1.860000e-70 278.0
157 TraesCS1B01G213200 chrUn 79.724 434 48 21 2164 2586 293112577 293112981 1.860000e-70 278.0
158 TraesCS1B01G213200 chrUn 86.916 214 28 0 2 215 197229800 197230013 2.440000e-59 241.0
159 TraesCS1B01G213200 chrUn 78.841 397 52 19 2244 2625 383582323 383581944 8.770000e-59 239.0
160 TraesCS1B01G213200 chrUn 78.734 395 40 25 2164 2546 78995957 78996319 2.450000e-54 224.0
161 TraesCS1B01G213200 chrUn 83.740 246 13 10 2164 2399 24287863 24288091 2.470000e-49 207.0
162 TraesCS1B01G213200 chrUn 80.669 269 44 8 614 878 347568222 347568486 1.150000e-47 202.0
163 TraesCS1B01G213200 chrUn 80.669 269 44 8 614 878 347605810 347606074 1.150000e-47 202.0
164 TraesCS1B01G213200 chrUn 80.669 269 44 8 614 878 381237432 381237168 1.150000e-47 202.0
165 TraesCS1B01G213200 chrUn 80.669 269 44 8 614 878 381269112 381268848 1.150000e-47 202.0
166 TraesCS1B01G213200 chrUn 75.906 469 70 33 2159 2615 1749857 1750294 4.140000e-47 200.0
167 TraesCS1B01G213200 chrUn 82.996 247 14 14 2164 2399 229257157 229256928 1.490000e-46 198.0
168 TraesCS1B01G213200 chrUn 91.549 142 12 0 2403 2544 471699120 471699261 5.350000e-46 196.0
169 TraesCS1B01G213200 chrUn 82.186 247 16 10 2164 2399 261302134 261301905 3.220000e-43 187.0
170 TraesCS1B01G213200 chrUn 82.186 247 16 10 2164 2399 261310221 261309992 3.220000e-43 187.0
171 TraesCS1B01G213200 chrUn 81.781 247 17 12 2164 2399 155966396 155966625 1.500000e-41 182.0
172 TraesCS1B01G213200 chrUn 81.377 247 18 12 2164 2399 344843910 344844139 6.970000e-40 176.0
173 TraesCS1B01G213200 chrUn 91.736 121 1 2 2285 2397 50237213 50237332 7.020000e-35 159.0
174 TraesCS1B01G213200 chrUn 90.909 121 2 2 2285 2397 31749641 31749522 3.270000e-33 154.0
175 TraesCS1B01G213200 chrUn 88.618 123 3 3 2285 2397 31750012 31749891 9.150000e-29 139.0
176 TraesCS1B01G213200 chr4A 85.778 225 32 0 2 226 27174189 27173965 8.770000e-59 239.0
177 TraesCS1B01G213200 chr4A 81.423 253 46 1 2 254 250388505 250388254 8.890000e-49 206.0
178 TraesCS1B01G213200 chr6A 84.722 216 33 0 33 248 461958792 461958577 4.110000e-52 217.0
179 TraesCS1B01G213200 chr5D 83.333 222 34 3 658 877 9058459 9058239 1.150000e-47 202.0
180 TraesCS1B01G213200 chr5D 91.667 72 6 0 1 72 282147037 282147108 4.320000e-17 100.0
181 TraesCS1B01G213200 chr5D 83.333 90 6 2 4617 4698 420933974 420934062 2.620000e-09 75.0
182 TraesCS1B01G213200 chr5D 97.500 40 1 0 33 72 9059281 9059242 1.220000e-07 69.4
183 TraesCS1B01G213200 chr2D 84.946 186 27 1 700 884 398418662 398418477 3.220000e-43 187.0
184 TraesCS1B01G213200 chr2D 80.000 275 32 20 628 884 204510319 204510050 1.500000e-41 182.0
185 TraesCS1B01G213200 chr2D 88.750 80 9 0 4618 4697 86080992 86080913 1.550000e-16 99.0
186 TraesCS1B01G213200 chr2D 90.566 53 5 0 4617 4669 121000534 121000482 3.380000e-08 71.3
187 TraesCS1B01G213200 chr2B 84.173 139 11 6 258 386 37562461 37562598 2.560000e-24 124.0
188 TraesCS1B01G213200 chr2B 100.000 29 0 0 358 386 37716883 37716911 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G213200 chr1B 387297392 387304155 6763 False 12491.000000 12491 100.000000 1 6764 1 chr1B.!!$F1 6763
1 TraesCS1B01G213200 chr1B 539129965 539131980 2015 False 2065.000000 2065 85.749000 2651 4622 1 chr1B.!!$F3 1971
2 TraesCS1B01G213200 chr1B 247434332 247436017 1685 True 1731.000000 1731 85.841000 2246 3868 1 chr1B.!!$R3 1622
3 TraesCS1B01G213200 chr1B 529504749 529506030 1281 False 1613.000000 1613 89.642000 3354 4616 1 chr1B.!!$F2 1262
4 TraesCS1B01G213200 chr1B 247426069 247426785 716 True 1037.000000 1037 92.748000 3900 4616 1 chr1B.!!$R2 716
5 TraesCS1B01G213200 chr1B 348800281 348802798 2517 False 617.000000 1600 91.725250 2163 4616 4 chr1B.!!$F4 2453
6 TraesCS1B01G213200 chr1A 356467682 356472101 4419 False 1116.125000 3155 93.816500 1210 6764 4 chr1A.!!$F2 5554
7 TraesCS1B01G213200 chr6B 657112664 657114770 2106 True 2420.000000 2420 88.116000 2244 4262 1 chr6B.!!$R2 2018
8 TraesCS1B01G213200 chr6B 599810101 599811362 1261 True 1513.000000 1513 88.590000 3376 4616 1 chr6B.!!$R1 1240
9 TraesCS1B01G213200 chr3B 181306041 181308409 2368 False 2355.000000 2355 85.423000 2338 4618 1 chr3B.!!$F1 2280
10 TraesCS1B01G213200 chr3B 284382295 284384860 2565 False 1079.000000 1655 86.654500 2244 4616 2 chr3B.!!$F2 2372
11 TraesCS1B01G213200 chr3B 354026922 354027925 1003 True 898.000000 898 83.477000 2337 3336 1 chr3B.!!$R1 999
12 TraesCS1B01G213200 chr3B 565430346 565432872 2526 True 857.666667 1563 89.148000 2227 4616 3 chr3B.!!$R3 2389
13 TraesCS1B01G213200 chr5B 386333190 386334951 1761 True 1228.500000 2285 94.165000 2163 3905 2 chr5B.!!$R3 1742
14 TraesCS1B01G213200 chr5B 288076219 288076731 512 False 725.000000 725 92.203000 1 512 1 chr5B.!!$F2 511
15 TraesCS1B01G213200 chr5B 645535048 645537589 2541 True 440.000000 460 86.567500 2244 2813 2 chr5B.!!$R4 569
16 TraesCS1B01G213200 chr2A 690310987 690313281 2294 False 2261.000000 2261 84.951000 2338 4620 1 chr2A.!!$F1 2282
17 TraesCS1B01G213200 chr2A 736023189 736024847 1658 True 1820.000000 1820 86.946000 2651 4269 1 chr2A.!!$R2 1618
18 TraesCS1B01G213200 chr3D 532111263 532113268 2005 False 2161.000000 2161 86.506000 2633 4617 1 chr3D.!!$F3 1984
19 TraesCS1B01G213200 chr3D 246589468 246591707 2239 False 2121.000000 2121 84.269000 2338 4596 1 chr3D.!!$F2 2258
20 TraesCS1B01G213200 chr4D 408805375 408807775 2400 True 2056.000000 2056 82.626000 2164 4617 1 chr4D.!!$R6 2453
21 TraesCS1B01G213200 chr4D 37256827 37257601 774 True 767.000000 767 84.906000 107 881 1 chr4D.!!$R1 774
22 TraesCS1B01G213200 chr4D 291659464 291660268 804 False 638.000000 638 82.121000 123 878 1 chr4D.!!$F1 755
23 TraesCS1B01G213200 chr4D 509029318 509031161 1843 False 270.500000 287 89.631000 2337 2590 2 chr4D.!!$F6 253
24 TraesCS1B01G213200 chr4D 417677330 417678045 715 True 263.500000 331 84.187500 2164 2813 2 chr4D.!!$R8 649
25 TraesCS1B01G213200 chr4D 104838588 104841128 2540 True 243.500000 289 76.729500 2164 2812 2 chr4D.!!$R7 648
26 TraesCS1B01G213200 chr4B 89521437 89524414 2977 False 708.000000 1585 90.685000 2163 4624 4 chr4B.!!$F4 2461
27 TraesCS1B01G213200 chr4B 389110774 389112786 2012 True 700.600000 2049 94.447400 2160 4627 5 chr4B.!!$R3 2467
28 TraesCS1B01G213200 chr4B 285613470 285616183 2713 False 227.750000 313 90.345500 2163 2813 4 chr4B.!!$F5 650
29 TraesCS1B01G213200 chr7B 285436385 285438353 1968 False 2008.000000 2008 85.444000 2651 4607 1 chr7B.!!$F3 1956
30 TraesCS1B01G213200 chr7B 23634710 23636032 1322 False 826.666667 1873 94.558667 2164 4617 3 chr7B.!!$F4 2453
31 TraesCS1B01G213200 chr7B 23611121 23611874 753 False 780.000000 780 86.257000 2597 3317 1 chr7B.!!$F2 720
32 TraesCS1B01G213200 chr7B 23606238 23606740 502 False 645.000000 645 90.675000 2164 2641 1 chr7B.!!$F1 477
33 TraesCS1B01G213200 chr1D 228810067 228812243 2176 False 1908.000000 1908 83.156000 2448 4616 1 chr1D.!!$F4 2168
34 TraesCS1B01G213200 chr1D 321679587 321681936 2349 False 1027.500000 1794 83.614500 2338 4337 2 chr1D.!!$F9 1999
35 TraesCS1B01G213200 chr1D 285050089 285053306 3217 False 804.900000 1687 92.098600 1089 6764 5 chr1D.!!$F8 5675
36 TraesCS1B01G213200 chr1D 493214337 493217162 2825 False 369.333333 488 91.308333 2164 2812 3 chr1D.!!$F10 648
37 TraesCS1B01G213200 chr1D 247368039 247369057 1018 False 210.500000 239 86.390500 2 878 2 chr1D.!!$F7 876
38 TraesCS1B01G213200 chr1D 247515433 247517462 2029 True 202.000000 302 92.350333 2164 2580 3 chr1D.!!$R8 416
39 TraesCS1B01G213200 chr3A 17731146 17733141 1995 False 1842.000000 1842 83.846000 2633 4616 1 chr3A.!!$F1 1983
40 TraesCS1B01G213200 chr7D 459421887 459423248 1361 True 1751.000000 1751 89.920000 2900 4268 1 chr7D.!!$R1 1368
41 TraesCS1B01G213200 chr7D 336161142 336161745 603 False 279.000000 279 76.613000 2244 2812 1 chr7D.!!$F4 568
42 TraesCS1B01G213200 chr7A 62487976 62489264 1288 False 1014.000000 1014 82.069000 2338 3551 1 chr7A.!!$F1 1213
43 TraesCS1B01G213200 chr5A 423921371 423922241 870 False 660.000000 660 81.314000 50 883 1 chr5A.!!$F3 833
44 TraesCS1B01G213200 chr6D 235770339 235770931 592 False 279.000000 279 76.557000 2244 2810 1 chr6D.!!$F1 566
45 TraesCS1B01G213200 chr6D 132050288 132053109 2821 False 260.000000 316 77.518000 2161 2813 2 chr6D.!!$F3 652
46 TraesCS1B01G213200 chr6D 100352672 100355106 2434 True 228.000000 285 80.032500 2162 2813 2 chr6D.!!$R7 651
47 TraesCS1B01G213200 chr6D 200482756 200485201 2445 False 224.000000 272 76.491000 2164 2813 2 chr6D.!!$F4 649
48 TraesCS1B01G213200 chr6D 11438529 11440846 2317 True 209.750000 292 90.425250 2164 2582 4 chr6D.!!$R6 418

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
904 1304 0.321346 ACACGAGGATGTCATGTGCA 59.679 50.000 0.0 0.0 33.96 4.57 F
1132 1532 0.036294 CCCACCTTCGTCCTTCCTTC 60.036 60.000 0.0 0.0 0.00 3.46 F
2590 3279 0.110295 CCATGTCTTCACCACCACCA 59.890 55.000 0.0 0.0 0.00 4.17 F
3349 4562 1.451028 GCCATCCTCTTCGCTGCTT 60.451 57.895 0.0 0.0 0.00 3.91 F
3539 4785 0.758734 CTCATATCACCTTCGGGGCA 59.241 55.000 0.0 0.0 40.03 5.36 F
3898 5145 1.376424 CAGCAAGCATCACCGTCCT 60.376 57.895 0.0 0.0 0.00 3.85 F
5057 15787 1.460504 CTGCAGCAATGGATGACACT 58.539 50.000 0.0 0.0 30.05 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2571 3260 0.110295 TGGTGGTGGTGAAGACATGG 59.890 55.000 0.00 0.00 0.00 3.66 R
2716 3471 0.830648 TGATTTCTGCCGGGGAGTAG 59.169 55.000 15.63 0.00 0.00 2.57 R
3404 4650 1.003839 TGGCGAAATCGAGCTTGGT 60.004 52.632 7.06 0.00 43.02 3.67 R
4852 15581 1.065926 TGCTATTGCTACTGCTGCAGT 60.066 47.619 34.54 34.54 41.71 4.40 R
5429 16159 0.251832 TCTTCCTCTTCTCGCCCTGT 60.252 55.000 0.00 0.00 0.00 4.00 R
5478 16208 1.415672 TTGGCCTTCTTCACCTCCGT 61.416 55.000 3.32 0.00 0.00 4.69 R
6423 17172 0.178767 CAGATTCGGAGTCCATGGCA 59.821 55.000 6.96 0.00 0.00 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.354305 CGTACGTAGATGCGGGCC 60.354 66.667 7.22 0.00 35.98 5.80
41 42 3.218470 TCCCGTATGCCCCGTACG 61.218 66.667 8.69 8.69 45.41 3.67
87 88 4.382320 GTTGTAGGTGGCGGCCGA 62.382 66.667 33.48 5.65 0.00 5.54
110 111 1.301637 TATATCGTCGGGACCGCGA 60.302 57.895 24.10 24.10 45.54 5.87
174 175 1.028330 CCTGATGACGCCATTGCTGT 61.028 55.000 0.00 0.00 32.09 4.40
176 177 1.200716 CTGATGACGCCATTGCTGTTT 59.799 47.619 0.00 0.00 32.09 2.83
279 281 1.808945 GTCCCTTCGACTCGTGAGTAA 59.191 52.381 1.83 0.00 42.66 2.24
332 334 0.461961 GACTTCCGGATGCACTAGCT 59.538 55.000 16.84 0.00 42.74 3.32
407 410 5.071519 CAGAGAGGTGGATGGATTAGTTGAT 59.928 44.000 0.00 0.00 0.00 2.57
518 745 2.310327 AATGCGCGGCTGGAGTGATA 62.310 55.000 8.83 0.00 0.00 2.15
752 1152 9.507329 GGATACCATGTAGAATATGTGAATTGT 57.493 33.333 0.00 0.00 0.00 2.71
777 1177 6.188400 TGATGTATTGCTTTTCGTGCATAA 57.812 33.333 0.00 0.00 40.34 1.90
806 1206 9.263446 ACGTATATATGATGTATAAAGGTGGGT 57.737 33.333 8.98 0.00 0.00 4.51
852 1252 3.904339 ACTAGAAGGCGGATCCAATACAT 59.096 43.478 13.41 0.00 37.29 2.29
883 1283 7.282901 TGCACATAACACATATACTCAGCAATT 59.717 33.333 0.00 0.00 0.00 2.32
884 1284 7.800380 GCACATAACACATATACTCAGCAATTC 59.200 37.037 0.00 0.00 0.00 2.17
885 1285 8.829612 CACATAACACATATACTCAGCAATTCA 58.170 33.333 0.00 0.00 0.00 2.57
886 1286 8.830580 ACATAACACATATACTCAGCAATTCAC 58.169 33.333 0.00 0.00 0.00 3.18
887 1287 8.829612 CATAACACATATACTCAGCAATTCACA 58.170 33.333 0.00 0.00 0.00 3.58
888 1288 6.668541 ACACATATACTCAGCAATTCACAC 57.331 37.500 0.00 0.00 0.00 3.82
889 1289 5.291858 ACACATATACTCAGCAATTCACACG 59.708 40.000 0.00 0.00 0.00 4.49
890 1290 5.519927 CACATATACTCAGCAATTCACACGA 59.480 40.000 0.00 0.00 0.00 4.35
891 1291 5.750547 ACATATACTCAGCAATTCACACGAG 59.249 40.000 0.00 0.00 0.00 4.18
892 1292 1.800805 ACTCAGCAATTCACACGAGG 58.199 50.000 0.00 0.00 0.00 4.63
893 1293 1.344438 ACTCAGCAATTCACACGAGGA 59.656 47.619 0.00 0.00 0.00 3.71
894 1294 2.027745 ACTCAGCAATTCACACGAGGAT 60.028 45.455 0.00 0.00 0.00 3.24
895 1295 2.349590 TCAGCAATTCACACGAGGATG 58.650 47.619 0.00 0.00 0.00 3.51
896 1296 2.079158 CAGCAATTCACACGAGGATGT 58.921 47.619 0.00 0.00 0.00 3.06
897 1297 2.094894 CAGCAATTCACACGAGGATGTC 59.905 50.000 0.00 0.00 0.00 3.06
898 1298 2.076100 GCAATTCACACGAGGATGTCA 58.924 47.619 0.00 0.00 0.00 3.58
899 1299 2.679837 GCAATTCACACGAGGATGTCAT 59.320 45.455 0.00 0.00 0.00 3.06
900 1300 3.486375 GCAATTCACACGAGGATGTCATG 60.486 47.826 0.00 0.00 0.00 3.07
901 1301 3.616956 ATTCACACGAGGATGTCATGT 57.383 42.857 0.00 0.00 0.00 3.21
902 1302 2.368655 TCACACGAGGATGTCATGTG 57.631 50.000 0.00 0.00 41.62 3.21
903 1303 0.723414 CACACGAGGATGTCATGTGC 59.277 55.000 0.00 0.00 34.76 4.57
904 1304 0.321346 ACACGAGGATGTCATGTGCA 59.679 50.000 0.00 0.00 33.96 4.57
905 1305 1.065926 ACACGAGGATGTCATGTGCAT 60.066 47.619 0.00 5.47 33.96 3.96
906 1306 1.329599 CACGAGGATGTCATGTGCATG 59.670 52.381 5.86 5.86 40.09 4.06
907 1307 0.942252 CGAGGATGTCATGTGCATGG 59.058 55.000 11.68 0.00 39.24 3.66
908 1308 1.315690 GAGGATGTCATGTGCATGGG 58.684 55.000 11.68 0.00 39.24 4.00
909 1309 0.627451 AGGATGTCATGTGCATGGGT 59.373 50.000 11.68 0.00 39.24 4.51
910 1310 1.027357 GGATGTCATGTGCATGGGTC 58.973 55.000 11.68 7.70 39.24 4.46
911 1311 1.409241 GGATGTCATGTGCATGGGTCT 60.409 52.381 11.68 0.00 39.24 3.85
912 1312 1.945394 GATGTCATGTGCATGGGTCTC 59.055 52.381 11.68 2.09 39.24 3.36
913 1313 0.986527 TGTCATGTGCATGGGTCTCT 59.013 50.000 11.68 0.00 39.24 3.10
914 1314 2.187100 TGTCATGTGCATGGGTCTCTA 58.813 47.619 11.68 0.00 39.24 2.43
915 1315 2.169144 TGTCATGTGCATGGGTCTCTAG 59.831 50.000 11.68 0.00 39.24 2.43
916 1316 1.139654 TCATGTGCATGGGTCTCTAGC 59.860 52.381 11.68 0.00 39.24 3.42
917 1317 0.471617 ATGTGCATGGGTCTCTAGCC 59.528 55.000 0.00 0.00 44.02 3.93
927 1327 4.965200 GGGTCTCTAGCCACTCATAAAT 57.035 45.455 0.00 0.00 43.18 1.40
929 1329 6.613153 GGGTCTCTAGCCACTCATAAATAT 57.387 41.667 0.00 0.00 43.18 1.28
930 1330 6.402222 GGGTCTCTAGCCACTCATAAATATG 58.598 44.000 0.00 0.00 43.18 1.78
931 1331 6.402222 GGTCTCTAGCCACTCATAAATATGG 58.598 44.000 0.84 0.00 34.50 2.74
932 1332 6.211584 GGTCTCTAGCCACTCATAAATATGGA 59.788 42.308 0.84 0.00 33.80 3.41
933 1333 7.319646 GTCTCTAGCCACTCATAAATATGGAG 58.680 42.308 0.84 0.00 33.80 3.86
934 1334 6.438741 TCTCTAGCCACTCATAAATATGGAGG 59.561 42.308 0.84 2.56 33.80 4.30
935 1335 4.647564 AGCCACTCATAAATATGGAGGG 57.352 45.455 0.84 0.00 33.80 4.30
936 1336 4.242811 AGCCACTCATAAATATGGAGGGA 58.757 43.478 0.00 0.00 33.80 4.20
937 1337 4.665009 AGCCACTCATAAATATGGAGGGAA 59.335 41.667 0.00 0.00 33.80 3.97
938 1338 5.314306 AGCCACTCATAAATATGGAGGGAAT 59.686 40.000 0.00 0.00 33.80 3.01
939 1339 5.416952 GCCACTCATAAATATGGAGGGAATG 59.583 44.000 0.00 0.00 33.80 2.67
940 1340 6.546484 CCACTCATAAATATGGAGGGAATGT 58.454 40.000 0.00 0.00 33.80 2.71
941 1341 7.006509 CCACTCATAAATATGGAGGGAATGTT 58.993 38.462 0.00 0.00 33.80 2.71
942 1342 7.175641 CCACTCATAAATATGGAGGGAATGTTC 59.824 40.741 0.00 0.00 33.80 3.18
943 1343 7.941238 CACTCATAAATATGGAGGGAATGTTCT 59.059 37.037 0.84 0.00 34.50 3.01
944 1344 9.170890 ACTCATAAATATGGAGGGAATGTTCTA 57.829 33.333 0.84 0.00 34.50 2.10
970 1370 7.813087 AAAAACATGGAGGGAATTTTCCTAT 57.187 32.000 9.13 0.00 46.72 2.57
971 1371 8.909423 AAAAACATGGAGGGAATTTTCCTATA 57.091 30.769 9.13 0.00 46.72 1.31
972 1372 8.909423 AAAACATGGAGGGAATTTTCCTATAA 57.091 30.769 9.13 0.00 46.72 0.98
973 1373 8.909423 AAACATGGAGGGAATTTTCCTATAAA 57.091 30.769 9.13 0.00 46.72 1.40
974 1374 8.909423 AACATGGAGGGAATTTTCCTATAAAA 57.091 30.769 9.13 0.00 46.72 1.52
975 1375 9.506042 AACATGGAGGGAATTTTCCTATAAAAT 57.494 29.630 9.13 0.00 46.72 1.82
986 1386 9.847224 AATTTTCCTATAAAATAGAAGCTCCGA 57.153 29.630 0.00 0.00 30.38 4.55
987 1387 8.658499 TTTTCCTATAAAATAGAAGCTCCGAC 57.342 34.615 0.00 0.00 0.00 4.79
988 1388 6.342338 TCCTATAAAATAGAAGCTCCGACC 57.658 41.667 0.00 0.00 0.00 4.79
989 1389 5.245526 TCCTATAAAATAGAAGCTCCGACCC 59.754 44.000 0.00 0.00 0.00 4.46
990 1390 2.311124 AAAATAGAAGCTCCGACCCG 57.689 50.000 0.00 0.00 0.00 5.28
1007 1407 4.493049 GGCCCGGCCCATTACGAA 62.493 66.667 18.83 0.00 44.06 3.85
1008 1408 2.438795 GCCCGGCCCATTACGAAA 60.439 61.111 0.00 0.00 0.00 3.46
1009 1409 2.767445 GCCCGGCCCATTACGAAAC 61.767 63.158 0.00 0.00 0.00 2.78
1010 1410 1.078001 CCCGGCCCATTACGAAACT 60.078 57.895 0.00 0.00 0.00 2.66
1011 1411 0.678684 CCCGGCCCATTACGAAACTT 60.679 55.000 0.00 0.00 0.00 2.66
1012 1412 1.407162 CCCGGCCCATTACGAAACTTA 60.407 52.381 0.00 0.00 0.00 2.24
1013 1413 2.567985 CCGGCCCATTACGAAACTTAT 58.432 47.619 0.00 0.00 0.00 1.73
1014 1414 2.946990 CCGGCCCATTACGAAACTTATT 59.053 45.455 0.00 0.00 0.00 1.40
1015 1415 3.379057 CCGGCCCATTACGAAACTTATTT 59.621 43.478 0.00 0.00 0.00 1.40
1016 1416 4.142337 CCGGCCCATTACGAAACTTATTTT 60.142 41.667 0.00 0.00 0.00 1.82
1017 1417 5.404096 CGGCCCATTACGAAACTTATTTTT 58.596 37.500 0.00 0.00 0.00 1.94
1035 1435 3.973206 TTTTGAGAGAGCCCATTACGA 57.027 42.857 0.00 0.00 0.00 3.43
1036 1436 3.973206 TTTGAGAGAGCCCATTACGAA 57.027 42.857 0.00 0.00 0.00 3.85
1037 1437 3.973206 TTGAGAGAGCCCATTACGAAA 57.027 42.857 0.00 0.00 0.00 3.46
1038 1438 3.247006 TGAGAGAGCCCATTACGAAAC 57.753 47.619 0.00 0.00 0.00 2.78
1039 1439 2.832129 TGAGAGAGCCCATTACGAAACT 59.168 45.455 0.00 0.00 0.00 2.66
1040 1440 3.260884 TGAGAGAGCCCATTACGAAACTT 59.739 43.478 0.00 0.00 0.00 2.66
1041 1441 4.464951 TGAGAGAGCCCATTACGAAACTTA 59.535 41.667 0.00 0.00 0.00 2.24
1042 1442 4.756502 AGAGAGCCCATTACGAAACTTAC 58.243 43.478 0.00 0.00 0.00 2.34
1043 1443 3.869832 GAGAGCCCATTACGAAACTTACC 59.130 47.826 0.00 0.00 0.00 2.85
1044 1444 2.606272 GAGCCCATTACGAAACTTACCG 59.394 50.000 0.00 0.00 0.00 4.02
1045 1445 1.063027 GCCCATTACGAAACTTACCGC 59.937 52.381 0.00 0.00 0.00 5.68
1046 1446 2.348660 CCCATTACGAAACTTACCGCA 58.651 47.619 0.00 0.00 0.00 5.69
1047 1447 2.350498 CCCATTACGAAACTTACCGCAG 59.650 50.000 0.00 0.00 0.00 5.18
1048 1448 2.997986 CCATTACGAAACTTACCGCAGT 59.002 45.455 0.00 0.00 0.00 4.40
1049 1449 4.175516 CCATTACGAAACTTACCGCAGTA 58.824 43.478 0.00 0.00 0.00 2.74
1050 1450 4.266976 CCATTACGAAACTTACCGCAGTAG 59.733 45.833 0.00 0.00 0.00 2.57
1051 1451 2.358939 ACGAAACTTACCGCAGTAGG 57.641 50.000 0.00 0.00 37.30 3.18
1052 1452 0.997196 CGAAACTTACCGCAGTAGGC 59.003 55.000 0.00 0.00 39.90 3.93
1061 1461 4.285851 GCAGTAGGCGCTTGAGTT 57.714 55.556 7.64 0.00 0.00 3.01
1062 1462 2.082354 GCAGTAGGCGCTTGAGTTC 58.918 57.895 7.64 0.00 0.00 3.01
1063 1463 1.687494 GCAGTAGGCGCTTGAGTTCG 61.687 60.000 7.64 0.00 0.00 3.95
1064 1464 0.388649 CAGTAGGCGCTTGAGTTCGT 60.389 55.000 7.64 0.00 0.00 3.85
1065 1465 0.109226 AGTAGGCGCTTGAGTTCGTC 60.109 55.000 7.64 0.00 0.00 4.20
1066 1466 1.077089 GTAGGCGCTTGAGTTCGTCC 61.077 60.000 7.64 0.00 0.00 4.79
1067 1467 1.248785 TAGGCGCTTGAGTTCGTCCT 61.249 55.000 7.64 0.00 36.63 3.85
1068 1468 2.095252 GGCGCTTGAGTTCGTCCTC 61.095 63.158 7.64 0.00 0.00 3.71
1069 1469 2.095252 GCGCTTGAGTTCGTCCTCC 61.095 63.158 0.00 0.00 0.00 4.30
1070 1470 1.801913 CGCTTGAGTTCGTCCTCCG 60.802 63.158 2.47 0.00 38.13 4.63
1071 1471 2.095252 GCTTGAGTTCGTCCTCCGC 61.095 63.158 2.47 2.21 36.19 5.54
1072 1472 1.446272 CTTGAGTTCGTCCTCCGCC 60.446 63.158 2.47 0.00 36.19 6.13
1073 1473 2.837371 CTTGAGTTCGTCCTCCGCCC 62.837 65.000 2.47 0.00 36.19 6.13
1074 1474 3.379445 GAGTTCGTCCTCCGCCCA 61.379 66.667 0.00 0.00 36.19 5.36
1075 1475 3.358076 GAGTTCGTCCTCCGCCCAG 62.358 68.421 0.00 0.00 36.19 4.45
1081 1481 4.408396 TCCTCCGCCCAGCCCTAA 62.408 66.667 0.00 0.00 0.00 2.69
1082 1482 3.407967 CCTCCGCCCAGCCCTAAA 61.408 66.667 0.00 0.00 0.00 1.85
1083 1483 2.674754 CTCCGCCCAGCCCTAAAA 59.325 61.111 0.00 0.00 0.00 1.52
1084 1484 1.001393 CTCCGCCCAGCCCTAAAAA 60.001 57.895 0.00 0.00 0.00 1.94
1121 1521 0.743345 CCGACGATTTCCCCACCTTC 60.743 60.000 0.00 0.00 0.00 3.46
1127 1527 1.004394 GATTTCCCCACCTTCGTCCTT 59.996 52.381 0.00 0.00 0.00 3.36
1128 1528 0.399075 TTTCCCCACCTTCGTCCTTC 59.601 55.000 0.00 0.00 0.00 3.46
1131 1531 1.489560 CCCCACCTTCGTCCTTCCTT 61.490 60.000 0.00 0.00 0.00 3.36
1132 1532 0.036294 CCCACCTTCGTCCTTCCTTC 60.036 60.000 0.00 0.00 0.00 3.46
1133 1533 0.977395 CCACCTTCGTCCTTCCTTCT 59.023 55.000 0.00 0.00 0.00 2.85
1134 1534 1.066787 CCACCTTCGTCCTTCCTTCTC 60.067 57.143 0.00 0.00 0.00 2.87
1135 1535 1.896465 CACCTTCGTCCTTCCTTCTCT 59.104 52.381 0.00 0.00 0.00 3.10
1136 1536 2.094442 CACCTTCGTCCTTCCTTCTCTC 60.094 54.545 0.00 0.00 0.00 3.20
1142 1542 2.619332 CGTCCTTCCTTCTCTCCTCTCA 60.619 54.545 0.00 0.00 0.00 3.27
1152 1552 3.449918 TCTCTCCTCTCACTCTCTCTCA 58.550 50.000 0.00 0.00 0.00 3.27
1153 1553 3.843619 TCTCTCCTCTCACTCTCTCTCAA 59.156 47.826 0.00 0.00 0.00 3.02
1154 1554 4.288366 TCTCTCCTCTCACTCTCTCTCAAA 59.712 45.833 0.00 0.00 0.00 2.69
1155 1555 4.588899 TCTCCTCTCACTCTCTCTCAAAG 58.411 47.826 0.00 0.00 0.00 2.77
1156 1556 4.042809 TCTCCTCTCACTCTCTCTCAAAGT 59.957 45.833 0.00 0.00 0.00 2.66
1157 1557 4.331968 TCCTCTCACTCTCTCTCAAAGTC 58.668 47.826 0.00 0.00 0.00 3.01
1158 1558 4.042809 TCCTCTCACTCTCTCTCAAAGTCT 59.957 45.833 0.00 0.00 0.00 3.24
1159 1559 4.396166 CCTCTCACTCTCTCTCAAAGTCTC 59.604 50.000 0.00 0.00 0.00 3.36
1160 1560 4.979335 TCTCACTCTCTCTCAAAGTCTCA 58.021 43.478 0.00 0.00 0.00 3.27
1161 1561 5.380900 TCTCACTCTCTCTCAAAGTCTCAA 58.619 41.667 0.00 0.00 0.00 3.02
1162 1562 5.473162 TCTCACTCTCTCTCAAAGTCTCAAG 59.527 44.000 0.00 0.00 0.00 3.02
1204 1604 1.683319 CGTGTGAGAGAGATGGGGAGA 60.683 57.143 0.00 0.00 0.00 3.71
1242 1642 3.071206 GCACGGAGGAGGCAGAGA 61.071 66.667 0.00 0.00 0.00 3.10
1417 1817 4.510340 CCGTAACAATATCCTTTCCCTTCG 59.490 45.833 0.00 0.00 0.00 3.79
1445 1845 3.310288 CCCTCTTCTTCCTCCTAGTCCTT 60.310 52.174 0.00 0.00 0.00 3.36
1460 1863 7.460071 TCCTAGTCCTTGATACTATCCACTAC 58.540 42.308 0.00 0.00 0.00 2.73
1462 1865 5.395611 AGTCCTTGATACTATCCACTACCC 58.604 45.833 0.00 0.00 0.00 3.69
1555 1969 3.134081 GTGAGCAGCCCTAACCAGTAATA 59.866 47.826 0.00 0.00 0.00 0.98
1557 1971 4.412199 TGAGCAGCCCTAACCAGTAATAAT 59.588 41.667 0.00 0.00 0.00 1.28
1558 1972 4.718961 AGCAGCCCTAACCAGTAATAATG 58.281 43.478 0.00 0.00 0.00 1.90
1560 1974 4.887655 GCAGCCCTAACCAGTAATAATGTT 59.112 41.667 0.00 0.00 0.00 2.71
1561 1975 6.059484 GCAGCCCTAACCAGTAATAATGTTA 58.941 40.000 0.00 0.00 0.00 2.41
1562 1976 6.715264 GCAGCCCTAACCAGTAATAATGTTAT 59.285 38.462 0.00 0.00 0.00 1.89
1563 1977 7.881232 GCAGCCCTAACCAGTAATAATGTTATA 59.119 37.037 0.00 0.00 0.00 0.98
1645 2060 5.179452 AGCTCCACCATACTGTGTAATTT 57.821 39.130 0.00 0.00 34.35 1.82
1672 2087 9.971922 TGATATAGTGATGTGACTGATTAAGTG 57.028 33.333 0.00 0.00 40.07 3.16
1673 2088 8.824159 ATATAGTGATGTGACTGATTAAGTGC 57.176 34.615 0.00 0.00 40.07 4.40
1674 2089 5.157940 AGTGATGTGACTGATTAAGTGCT 57.842 39.130 0.00 0.00 40.07 4.40
1675 2090 5.555017 AGTGATGTGACTGATTAAGTGCTT 58.445 37.500 0.00 0.00 40.07 3.91
1676 2091 6.701340 AGTGATGTGACTGATTAAGTGCTTA 58.299 36.000 0.00 0.00 40.07 3.09
1677 2092 6.591834 AGTGATGTGACTGATTAAGTGCTTAC 59.408 38.462 0.00 0.00 40.07 2.34
1678 2093 6.591834 GTGATGTGACTGATTAAGTGCTTACT 59.408 38.462 0.00 0.00 40.07 2.24
1679 2094 7.118390 GTGATGTGACTGATTAAGTGCTTACTT 59.882 37.037 0.00 0.00 40.07 2.24
1680 2095 8.311109 TGATGTGACTGATTAAGTGCTTACTTA 58.689 33.333 0.00 0.00 40.07 2.24
1681 2096 9.319143 GATGTGACTGATTAAGTGCTTACTTAT 57.681 33.333 1.21 0.00 40.07 1.73
1682 2097 9.672673 ATGTGACTGATTAAGTGCTTACTTATT 57.327 29.630 1.21 0.00 40.07 1.40
1683 2098 9.502091 TGTGACTGATTAAGTGCTTACTTATTT 57.498 29.630 1.21 0.00 40.07 1.40
1687 2102 9.392259 ACTGATTAAGTGCTTACTTATTTACCC 57.608 33.333 1.21 0.00 37.88 3.69
1688 2103 8.741603 TGATTAAGTGCTTACTTATTTACCCC 57.258 34.615 1.21 0.00 32.89 4.95
1689 2104 7.496591 TGATTAAGTGCTTACTTATTTACCCCG 59.503 37.037 1.21 0.00 32.89 5.73
1690 2105 3.538591 AGTGCTTACTTATTTACCCCGC 58.461 45.455 0.00 0.00 0.00 6.13
1691 2106 3.054948 AGTGCTTACTTATTTACCCCGCA 60.055 43.478 0.00 0.00 0.00 5.69
1692 2107 3.690628 GTGCTTACTTATTTACCCCGCAA 59.309 43.478 0.00 0.00 0.00 4.85
1693 2108 4.156373 GTGCTTACTTATTTACCCCGCAAA 59.844 41.667 0.00 0.00 0.00 3.68
1694 2109 4.765856 TGCTTACTTATTTACCCCGCAAAA 59.234 37.500 0.00 0.00 0.00 2.44
1695 2110 5.243283 TGCTTACTTATTTACCCCGCAAAAA 59.757 36.000 0.00 0.00 0.00 1.94
1779 2196 3.747193 CTGCAAGTTAATACCAAGTGCG 58.253 45.455 0.00 0.00 0.00 5.34
1852 2272 6.144080 GTGATGTTATATCCTAAGTGACGCAC 59.856 42.308 2.28 2.28 34.10 5.34
1916 2337 1.115930 ACACGGTGGCACTTCTCTCT 61.116 55.000 18.45 0.00 0.00 3.10
1917 2338 0.668706 CACGGTGGCACTTCTCTCTG 60.669 60.000 18.45 0.00 0.00 3.35
1986 2407 2.182827 TCAGATGTGCTGCTACCTCTT 58.817 47.619 0.00 0.00 44.52 2.85
2001 2422 4.126520 ACCTCTTGGGCCTTTTTCATTA 57.873 40.909 4.53 0.00 39.10 1.90
2005 2426 5.423290 CCTCTTGGGCCTTTTTCATTAGATT 59.577 40.000 4.53 0.00 0.00 2.40
2008 2429 4.095946 TGGGCCTTTTTCATTAGATTGCT 58.904 39.130 4.53 0.00 0.00 3.91
2050 2471 1.204704 TGTGGTCTCACTTATCCTGCG 59.795 52.381 0.00 0.00 43.94 5.18
2134 2814 8.958119 TGAAGACAACTGTTTGAATACTACTT 57.042 30.769 0.00 0.00 36.48 2.24
2136 2816 9.262358 GAAGACAACTGTTTGAATACTACTTCT 57.738 33.333 0.00 0.00 36.48 2.85
2137 2817 9.614792 AAGACAACTGTTTGAATACTACTTCTT 57.385 29.630 0.00 0.00 36.48 2.52
2138 2818 9.614792 AGACAACTGTTTGAATACTACTTCTTT 57.385 29.630 0.00 0.00 36.48 2.52
2141 2821 8.958043 CAACTGTTTGAATACTACTTCTTTTGC 58.042 33.333 0.00 0.00 34.24 3.68
2142 2822 7.352739 ACTGTTTGAATACTACTTCTTTTGCG 58.647 34.615 0.00 0.00 0.00 4.85
2143 2823 6.664515 TGTTTGAATACTACTTCTTTTGCGG 58.335 36.000 0.00 0.00 0.00 5.69
2144 2824 6.483974 TGTTTGAATACTACTTCTTTTGCGGA 59.516 34.615 0.00 0.00 0.00 5.54
2145 2825 7.174253 TGTTTGAATACTACTTCTTTTGCGGAT 59.826 33.333 0.00 0.00 0.00 4.18
2146 2826 6.662414 TGAATACTACTTCTTTTGCGGATG 57.338 37.500 0.00 0.00 0.00 3.51
2147 2827 6.170506 TGAATACTACTTCTTTTGCGGATGT 58.829 36.000 0.00 0.00 0.00 3.06
2148 2828 6.092122 TGAATACTACTTCTTTTGCGGATGTG 59.908 38.462 0.00 0.00 0.00 3.21
2149 2829 4.002906 ACTACTTCTTTTGCGGATGTGA 57.997 40.909 0.00 0.00 0.00 3.58
2150 2830 4.385825 ACTACTTCTTTTGCGGATGTGAA 58.614 39.130 0.00 0.00 0.00 3.18
2151 2831 5.003804 ACTACTTCTTTTGCGGATGTGAAT 58.996 37.500 0.00 0.00 0.00 2.57
2152 2832 6.170506 ACTACTTCTTTTGCGGATGTGAATA 58.829 36.000 0.00 0.00 0.00 1.75
2153 2833 6.823689 ACTACTTCTTTTGCGGATGTGAATAT 59.176 34.615 0.00 0.00 0.00 1.28
2154 2834 6.515272 ACTTCTTTTGCGGATGTGAATATT 57.485 33.333 0.00 0.00 0.00 1.28
2155 2835 7.624360 ACTTCTTTTGCGGATGTGAATATTA 57.376 32.000 0.00 0.00 0.00 0.98
2156 2836 7.472543 ACTTCTTTTGCGGATGTGAATATTAC 58.527 34.615 0.00 0.00 0.00 1.89
2157 2837 7.336931 ACTTCTTTTGCGGATGTGAATATTACT 59.663 33.333 0.00 0.00 0.00 2.24
2158 2838 8.725405 TTCTTTTGCGGATGTGAATATTACTA 57.275 30.769 0.00 0.00 0.00 1.82
2159 2839 8.138365 TCTTTTGCGGATGTGAATATTACTAC 57.862 34.615 0.00 0.00 0.00 2.73
2160 2840 6.854496 TTTGCGGATGTGAATATTACTACC 57.146 37.500 0.00 0.00 0.00 3.18
2161 2841 5.801531 TGCGGATGTGAATATTACTACCT 57.198 39.130 0.00 0.00 0.00 3.08
2217 2897 5.305644 CAGTTAGTTATGGCCCAGTCTATCT 59.694 44.000 0.00 0.52 0.00 1.98
2218 2898 5.905913 AGTTAGTTATGGCCCAGTCTATCTT 59.094 40.000 0.00 0.00 0.00 2.40
2219 2899 7.015292 CAGTTAGTTATGGCCCAGTCTATCTTA 59.985 40.741 0.00 0.00 0.00 2.10
2220 2900 7.735321 AGTTAGTTATGGCCCAGTCTATCTTAT 59.265 37.037 0.00 0.00 0.00 1.73
2221 2901 6.613153 AGTTATGGCCCAGTCTATCTTATC 57.387 41.667 0.00 0.00 0.00 1.75
2222 2902 5.186021 AGTTATGGCCCAGTCTATCTTATCG 59.814 44.000 0.00 0.00 0.00 2.92
2223 2903 2.958818 TGGCCCAGTCTATCTTATCGT 58.041 47.619 0.00 0.00 0.00 3.73
2224 2904 3.305720 TGGCCCAGTCTATCTTATCGTT 58.694 45.455 0.00 0.00 0.00 3.85
2225 2905 4.476297 TGGCCCAGTCTATCTTATCGTTA 58.524 43.478 0.00 0.00 0.00 3.18
2296 2976 1.216990 ATTAGGGGCTTGGGAGTCAG 58.783 55.000 0.00 0.00 0.00 3.51
2405 3094 2.444895 CTAGCCGCCTCCTTCCCT 60.445 66.667 0.00 0.00 0.00 4.20
2415 3104 2.262774 CTCCTTCCCTGCGCCATCTT 62.263 60.000 4.18 0.00 0.00 2.40
2420 3109 2.203126 CCTGCGCCATCTTCCTCC 60.203 66.667 4.18 0.00 0.00 4.30
2500 3189 2.041928 CCAGCTCCCTCCTTCCCT 59.958 66.667 0.00 0.00 0.00 4.20
2515 3204 2.598787 CCCTTACAACCTCCGGCCA 61.599 63.158 2.24 0.00 0.00 5.36
2519 3208 0.988832 TTACAACCTCCGGCCAAGAT 59.011 50.000 2.24 0.00 0.00 2.40
2563 3252 3.448686 CAGTTTGGTATCAGGTAGCTCG 58.551 50.000 0.00 0.00 0.00 5.03
2571 3260 0.524862 TCAGGTAGCTCGGTTTCGAC 59.475 55.000 0.00 0.00 40.88 4.20
2584 3273 2.489971 GTTTCGACCATGTCTTCACCA 58.510 47.619 0.00 0.00 0.00 4.17
2590 3279 0.110295 CCATGTCTTCACCACCACCA 59.890 55.000 0.00 0.00 0.00 4.17
2592 3281 2.517959 CATGTCTTCACCACCACCAAT 58.482 47.619 0.00 0.00 0.00 3.16
2593 3282 2.746279 TGTCTTCACCACCACCAATT 57.254 45.000 0.00 0.00 0.00 2.32
2641 3396 4.271816 CCGATCCTCTCCACCGCG 62.272 72.222 0.00 0.00 0.00 6.46
2642 3397 4.933064 CGATCCTCTCCACCGCGC 62.933 72.222 0.00 0.00 0.00 6.86
2643 3398 4.593864 GATCCTCTCCACCGCGCC 62.594 72.222 0.00 0.00 0.00 6.53
2668 3423 4.988716 TCCACCGGTCAGTCGCCT 62.989 66.667 2.59 0.00 0.00 5.52
2731 3489 1.684734 GGTCTACTCCCCGGCAGAA 60.685 63.158 0.00 0.00 0.00 3.02
2776 3534 2.063979 CACAGCCGTCCAGGGGATA 61.064 63.158 0.00 0.00 41.48 2.59
2860 3759 1.898094 AATGCTGCTGTCGTGGCAA 60.898 52.632 0.00 0.00 39.30 4.52
3059 4257 3.055719 CCGCCGTTTCCATGCAGT 61.056 61.111 0.00 0.00 0.00 4.40
3116 4314 2.048503 GGCTGACTACAACCGCGT 60.049 61.111 4.92 0.00 0.00 6.01
3207 4405 2.125512 GTCATCGCCGCCAGTCTT 60.126 61.111 0.00 0.00 0.00 3.01
3349 4562 1.451028 GCCATCCTCTTCGCTGCTT 60.451 57.895 0.00 0.00 0.00 3.91
3478 4724 3.953612 TCAACCAGTGTGAGCAATTCTTT 59.046 39.130 0.00 0.00 0.00 2.52
3481 4727 2.549754 CCAGTGTGAGCAATTCTTTCGT 59.450 45.455 0.00 0.00 0.00 3.85
3489 4735 1.000274 GCAATTCTTTCGTGGGCAACT 60.000 47.619 0.00 0.00 0.00 3.16
3539 4785 0.758734 CTCATATCACCTTCGGGGCA 59.241 55.000 0.00 0.00 40.03 5.36
3606 4853 2.436646 CCATGGGAGCGCTTTCGT 60.437 61.111 13.26 5.52 38.14 3.85
3612 4859 2.734673 GGAGCGCTTTCGTGAGCTG 61.735 63.158 13.26 5.11 42.81 4.24
3686 4933 1.903877 CGCCTCCACTTCACCTCCAT 61.904 60.000 0.00 0.00 0.00 3.41
3714 4961 2.280254 TTCGCCGACCGCTTTCAA 60.280 55.556 0.00 0.00 36.73 2.69
3778 5025 3.628280 GAGCTCTTCGTCGGCGGTT 62.628 63.158 10.62 0.00 38.89 4.44
3898 5145 1.376424 CAGCAAGCATCACCGTCCT 60.376 57.895 0.00 0.00 0.00 3.85
4272 5543 3.267483 AGTGTTATGACCGGCATGTTAC 58.733 45.455 18.08 13.79 37.87 2.50
4292 5563 3.434309 ACGGGCTTAGTCCAGTTAGTTA 58.566 45.455 3.00 0.00 30.25 2.24
4377 5712 7.287927 TGGGAGTCAAGTAAACCTCTCTATATG 59.712 40.741 0.00 0.00 0.00 1.78
4403 5740 8.365060 AGGAGAGGAGATGTATCAATCTAATG 57.635 38.462 0.00 0.00 37.03 1.90
4625 13937 4.225267 CCTAGTTTCTACCAACCTCCATGT 59.775 45.833 0.00 0.00 0.00 3.21
4632 13944 5.009631 TCTACCAACCTCCATGTCAAAATG 58.990 41.667 0.00 0.00 0.00 2.32
4650 13962 6.887626 AAAATGTATGACGTTTTGGTAGGT 57.112 33.333 8.38 0.00 43.41 3.08
4651 13963 6.887626 AAATGTATGACGTTTTGGTAGGTT 57.112 33.333 0.00 0.00 33.87 3.50
4652 13964 7.982761 AAATGTATGACGTTTTGGTAGGTTA 57.017 32.000 0.00 0.00 33.87 2.85
4653 13965 7.605410 AATGTATGACGTTTTGGTAGGTTAG 57.395 36.000 0.00 0.00 0.00 2.34
4654 13966 6.100404 TGTATGACGTTTTGGTAGGTTAGT 57.900 37.500 0.00 0.00 0.00 2.24
4655 13967 6.523840 TGTATGACGTTTTGGTAGGTTAGTT 58.476 36.000 0.00 0.00 0.00 2.24
4656 13968 6.991531 TGTATGACGTTTTGGTAGGTTAGTTT 59.008 34.615 0.00 0.00 0.00 2.66
4657 13969 8.147058 TGTATGACGTTTTGGTAGGTTAGTTTA 58.853 33.333 0.00 0.00 0.00 2.01
4658 13970 7.662604 ATGACGTTTTGGTAGGTTAGTTTAG 57.337 36.000 0.00 0.00 0.00 1.85
4659 13971 5.466393 TGACGTTTTGGTAGGTTAGTTTAGC 59.534 40.000 0.00 0.00 0.00 3.09
4660 13972 4.756642 ACGTTTTGGTAGGTTAGTTTAGCC 59.243 41.667 0.00 0.00 0.00 3.93
4661 13973 4.999311 CGTTTTGGTAGGTTAGTTTAGCCT 59.001 41.667 0.00 0.00 42.45 4.58
4662 13974 6.165577 CGTTTTGGTAGGTTAGTTTAGCCTA 58.834 40.000 0.00 0.00 40.17 3.93
4671 13983 6.549242 AGGTTAGTTTAGCCTACCAAAATGT 58.451 36.000 0.00 0.00 37.65 2.71
4672 13984 6.657966 AGGTTAGTTTAGCCTACCAAAATGTC 59.342 38.462 0.00 0.00 37.65 3.06
4673 13985 6.431852 GGTTAGTTTAGCCTACCAAAATGTCA 59.568 38.462 0.00 0.00 0.00 3.58
4674 13986 7.122204 GGTTAGTTTAGCCTACCAAAATGTCAT 59.878 37.037 0.00 0.00 0.00 3.06
4675 13987 9.169592 GTTAGTTTAGCCTACCAAAATGTCATA 57.830 33.333 0.00 0.00 0.00 2.15
4676 13988 9.914834 TTAGTTTAGCCTACCAAAATGTCATAT 57.085 29.630 0.00 0.00 0.00 1.78
4689 14001 6.707440 AAATGTCATATATTTTGGCACGGA 57.293 33.333 0.00 0.00 30.31 4.69
4694 14006 5.408604 GTCATATATTTTGGCACGGAGGTAG 59.591 44.000 0.00 0.00 0.00 3.18
4737 14057 9.398538 AGAGTTATCTATTCCTCGTATATGGAC 57.601 37.037 0.00 0.00 32.54 4.02
4840 15569 9.474313 TGTTTCCCTCTATTAAAACATTGCTAT 57.526 29.630 0.00 0.00 36.86 2.97
4842 15571 9.693739 TTTCCCTCTATTAAAACATTGCTATGA 57.306 29.630 15.23 0.00 35.65 2.15
4865 15594 1.927895 ACGATTACTGCAGCAGTAGC 58.072 50.000 29.65 24.26 45.83 3.58
4867 15596 2.270923 CGATTACTGCAGCAGTAGCAA 58.729 47.619 29.65 20.56 45.83 3.91
4871 15600 1.661341 ACTGCAGCAGTAGCAATAGC 58.339 50.000 27.22 0.00 43.46 2.97
4892 15621 4.820173 AGCACCAGATTATGTGATGTGATG 59.180 41.667 3.68 0.00 34.37 3.07
4909 15639 4.218200 TGTGATGAACTTGTTTATGCCCTG 59.782 41.667 0.00 0.00 0.00 4.45
5057 15787 1.460504 CTGCAGCAATGGATGACACT 58.539 50.000 0.00 0.00 30.05 3.55
5429 16159 2.885135 AAGATGGTGTTGATGCAGGA 57.115 45.000 0.00 0.00 0.00 3.86
5646 16376 3.058085 GGCAATTTTGGAATGTTGGCAAG 60.058 43.478 0.00 0.00 43.89 4.01
5647 16377 3.609879 GCAATTTTGGAATGTTGGCAAGC 60.610 43.478 0.00 0.00 0.00 4.01
5855 16594 1.136141 GCTGTCTGTGTTGCAATCTCG 60.136 52.381 0.59 0.00 0.00 4.04
5862 16601 3.411446 TGTGTTGCAATCTCGATTCCTT 58.589 40.909 0.59 0.00 0.00 3.36
5890 16629 7.857734 TGAGACTGTTGTAATCTCAAACAAA 57.142 32.000 0.77 0.00 44.49 2.83
5892 16631 8.902806 TGAGACTGTTGTAATCTCAAACAAAAT 58.097 29.630 0.77 0.00 44.49 1.82
5895 16634 7.209475 ACTGTTGTAATCTCAAACAAAATGGG 58.791 34.615 0.00 0.00 37.35 4.00
5897 16636 7.786030 TGTTGTAATCTCAAACAAAATGGGAA 58.214 30.769 0.00 0.00 37.35 3.97
5898 16637 7.925483 TGTTGTAATCTCAAACAAAATGGGAAG 59.075 33.333 0.00 0.00 37.35 3.46
5902 16641 9.541143 GTAATCTCAAACAAAATGGGAAGAAAA 57.459 29.630 0.00 0.00 29.53 2.29
6029 16778 1.612395 GGAGGAGACAGGGAGCACTG 61.612 65.000 0.00 0.00 44.03 3.66
6213 16962 3.121030 CTCAAGCTGAACCGCCGG 61.121 66.667 0.00 0.00 0.00 6.13
6423 17172 1.152567 CCAGCTCCTCCTCCTCGAT 60.153 63.158 0.00 0.00 0.00 3.59
6438 17187 1.143838 CGATGCCATGGACTCCGAA 59.856 57.895 18.40 0.00 0.00 4.30
6509 17258 1.358787 TCCCAATGCATCACTCCCTTT 59.641 47.619 0.00 0.00 0.00 3.11
6565 17318 1.001181 CAAGGGATGCCTTTTGTGGTG 59.999 52.381 17.04 0.00 0.00 4.17
6575 17328 6.019779 TGCCTTTTGTGGTGTTACATTATC 57.980 37.500 0.00 0.00 0.00 1.75
6619 17374 8.911247 GGCAAATTACTTTGTCCAAATACTAG 57.089 34.615 7.31 0.00 43.07 2.57
6646 17401 4.931661 TTCGTGATAGTATTCACTCCCC 57.068 45.455 3.41 0.00 43.10 4.81
6664 17419 3.631686 TCCCCGCTGTTTGATTTGATATG 59.368 43.478 0.00 0.00 0.00 1.78
6684 17439 2.423185 TGGGCTGCACTAATCAAAATCG 59.577 45.455 2.50 0.00 0.00 3.34
6715 17473 8.691661 TGCATATGTAGTAGACTCATCAAGTA 57.308 34.615 4.29 0.00 38.74 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 4.280494 CGGGGCATACGGGACTCG 62.280 72.222 0.00 0.00 45.88 4.18
41 42 3.953201 CCACGTACGGGAATCCTAC 57.047 57.895 21.47 0.00 0.00 3.18
279 281 2.833582 ATCGGCCTCGTCGGACAT 60.834 61.111 9.10 0.00 43.06 3.06
407 410 2.173519 ACTTTGCTAGCTACCCGTACA 58.826 47.619 17.23 0.00 0.00 2.90
726 1126 9.507329 ACAATTCACATATTCTACATGGTATCC 57.493 33.333 0.00 0.00 0.00 2.59
752 1152 5.809719 TGCACGAAAAGCAATACATCATA 57.190 34.783 0.00 0.00 39.39 2.15
754 1154 4.700268 ATGCACGAAAAGCAATACATCA 57.300 36.364 0.00 0.00 46.27 3.07
878 1278 2.076100 TGACATCCTCGTGTGAATTGC 58.924 47.619 0.00 0.00 31.16 3.56
886 1286 1.329599 CATGCACATGACATCCTCGTG 59.670 52.381 4.57 0.42 41.20 4.35
887 1287 1.660167 CATGCACATGACATCCTCGT 58.340 50.000 4.57 0.00 41.20 4.18
888 1288 0.942252 CCATGCACATGACATCCTCG 59.058 55.000 12.18 0.00 41.20 4.63
889 1289 1.315690 CCCATGCACATGACATCCTC 58.684 55.000 12.18 0.00 41.20 3.71
890 1290 0.627451 ACCCATGCACATGACATCCT 59.373 50.000 12.18 0.00 41.20 3.24
891 1291 1.027357 GACCCATGCACATGACATCC 58.973 55.000 12.18 0.00 41.20 3.51
892 1292 1.945394 GAGACCCATGCACATGACATC 59.055 52.381 12.18 6.45 41.20 3.06
893 1293 1.562942 AGAGACCCATGCACATGACAT 59.437 47.619 12.18 0.00 41.20 3.06
894 1294 0.986527 AGAGACCCATGCACATGACA 59.013 50.000 12.18 0.00 41.20 3.58
895 1295 2.831333 CTAGAGACCCATGCACATGAC 58.169 52.381 12.18 3.80 41.20 3.06
896 1296 1.139654 GCTAGAGACCCATGCACATGA 59.860 52.381 12.18 0.00 41.20 3.07
897 1297 1.590932 GCTAGAGACCCATGCACATG 58.409 55.000 3.56 3.56 38.51 3.21
898 1298 0.471617 GGCTAGAGACCCATGCACAT 59.528 55.000 0.00 0.00 0.00 3.21
899 1299 0.909133 TGGCTAGAGACCCATGCACA 60.909 55.000 0.00 0.00 0.00 4.57
900 1300 0.462759 GTGGCTAGAGACCCATGCAC 60.463 60.000 0.00 0.00 32.95 4.57
901 1301 0.618680 AGTGGCTAGAGACCCATGCA 60.619 55.000 0.00 0.00 32.95 3.96
902 1302 0.105778 GAGTGGCTAGAGACCCATGC 59.894 60.000 0.00 0.00 32.95 4.06
903 1303 1.489481 TGAGTGGCTAGAGACCCATG 58.511 55.000 0.00 0.00 32.95 3.66
904 1304 2.485966 ATGAGTGGCTAGAGACCCAT 57.514 50.000 0.00 0.00 32.95 4.00
905 1305 3.398318 TTATGAGTGGCTAGAGACCCA 57.602 47.619 0.00 0.00 0.00 4.51
906 1306 4.965200 ATTTATGAGTGGCTAGAGACCC 57.035 45.455 0.00 0.00 0.00 4.46
907 1307 6.211584 TCCATATTTATGAGTGGCTAGAGACC 59.788 42.308 0.00 0.00 35.75 3.85
908 1308 7.233389 TCCATATTTATGAGTGGCTAGAGAC 57.767 40.000 0.00 0.00 35.75 3.36
909 1309 6.438741 CCTCCATATTTATGAGTGGCTAGAGA 59.561 42.308 0.00 0.00 35.75 3.10
910 1310 6.351711 CCCTCCATATTTATGAGTGGCTAGAG 60.352 46.154 0.00 0.00 35.75 2.43
911 1311 5.485353 CCCTCCATATTTATGAGTGGCTAGA 59.515 44.000 0.00 0.00 35.75 2.43
912 1312 5.485353 TCCCTCCATATTTATGAGTGGCTAG 59.515 44.000 0.00 0.00 35.75 3.42
913 1313 5.411493 TCCCTCCATATTTATGAGTGGCTA 58.589 41.667 0.00 0.00 35.75 3.93
914 1314 4.242811 TCCCTCCATATTTATGAGTGGCT 58.757 43.478 0.00 0.00 35.75 4.75
915 1315 4.640771 TCCCTCCATATTTATGAGTGGC 57.359 45.455 0.00 0.00 35.75 5.01
916 1316 6.546484 ACATTCCCTCCATATTTATGAGTGG 58.454 40.000 0.00 0.00 35.75 4.00
917 1317 7.941238 AGAACATTCCCTCCATATTTATGAGTG 59.059 37.037 0.00 0.00 35.75 3.51
918 1318 8.050316 AGAACATTCCCTCCATATTTATGAGT 57.950 34.615 0.00 0.00 35.75 3.41
960 1360 9.847224 TCGGAGCTTCTATTTTATAGGAAAATT 57.153 29.630 0.97 0.00 32.64 1.82
961 1361 9.274206 GTCGGAGCTTCTATTTTATAGGAAAAT 57.726 33.333 0.00 1.33 34.55 1.82
962 1362 7.713942 GGTCGGAGCTTCTATTTTATAGGAAAA 59.286 37.037 0.00 0.00 0.00 2.29
963 1363 7.215085 GGTCGGAGCTTCTATTTTATAGGAAA 58.785 38.462 0.00 0.00 0.00 3.13
964 1364 6.239515 GGGTCGGAGCTTCTATTTTATAGGAA 60.240 42.308 7.19 0.00 0.00 3.36
965 1365 5.245526 GGGTCGGAGCTTCTATTTTATAGGA 59.754 44.000 7.19 0.00 0.00 2.94
966 1366 5.480205 GGGTCGGAGCTTCTATTTTATAGG 58.520 45.833 7.19 0.00 0.00 2.57
967 1367 5.162075 CGGGTCGGAGCTTCTATTTTATAG 58.838 45.833 7.19 0.00 0.00 1.31
968 1368 5.130292 CGGGTCGGAGCTTCTATTTTATA 57.870 43.478 7.19 0.00 0.00 0.98
969 1369 3.991367 CGGGTCGGAGCTTCTATTTTAT 58.009 45.455 7.19 0.00 0.00 1.40
970 1370 3.447918 CGGGTCGGAGCTTCTATTTTA 57.552 47.619 7.19 0.00 0.00 1.52
971 1371 2.311124 CGGGTCGGAGCTTCTATTTT 57.689 50.000 7.19 0.00 0.00 1.82
991 1391 2.438795 TTTCGTAATGGGCCGGGC 60.439 61.111 22.00 22.00 0.00 6.13
992 1392 0.678684 AAGTTTCGTAATGGGCCGGG 60.679 55.000 2.18 0.00 0.00 5.73
993 1393 2.027003 TAAGTTTCGTAATGGGCCGG 57.973 50.000 0.00 0.00 0.00 6.13
994 1394 4.625972 AAATAAGTTTCGTAATGGGCCG 57.374 40.909 0.00 0.00 0.00 6.13
1014 1414 4.280436 TCGTAATGGGCTCTCTCAAAAA 57.720 40.909 0.00 0.00 0.00 1.94
1015 1415 3.973206 TCGTAATGGGCTCTCTCAAAA 57.027 42.857 0.00 0.00 0.00 2.44
1016 1416 3.973206 TTCGTAATGGGCTCTCTCAAA 57.027 42.857 0.00 0.00 0.00 2.69
1017 1417 3.260884 AGTTTCGTAATGGGCTCTCTCAA 59.739 43.478 0.00 0.00 0.00 3.02
1018 1418 2.832129 AGTTTCGTAATGGGCTCTCTCA 59.168 45.455 0.00 0.00 0.00 3.27
1019 1419 3.528597 AGTTTCGTAATGGGCTCTCTC 57.471 47.619 0.00 0.00 0.00 3.20
1020 1420 3.983044 AAGTTTCGTAATGGGCTCTCT 57.017 42.857 0.00 0.00 0.00 3.10
1021 1421 3.869832 GGTAAGTTTCGTAATGGGCTCTC 59.130 47.826 0.00 0.00 0.00 3.20
1022 1422 3.677976 CGGTAAGTTTCGTAATGGGCTCT 60.678 47.826 0.00 0.00 0.00 4.09
1023 1423 2.606272 CGGTAAGTTTCGTAATGGGCTC 59.394 50.000 0.00 0.00 0.00 4.70
1024 1424 2.624636 CGGTAAGTTTCGTAATGGGCT 58.375 47.619 0.00 0.00 0.00 5.19
1025 1425 1.063027 GCGGTAAGTTTCGTAATGGGC 59.937 52.381 0.00 0.00 0.00 5.36
1026 1426 2.348660 TGCGGTAAGTTTCGTAATGGG 58.651 47.619 0.00 0.00 0.00 4.00
1027 1427 2.997986 ACTGCGGTAAGTTTCGTAATGG 59.002 45.455 0.00 0.00 0.00 3.16
1028 1428 4.266976 CCTACTGCGGTAAGTTTCGTAATG 59.733 45.833 6.88 0.00 0.00 1.90
1029 1429 4.427312 CCTACTGCGGTAAGTTTCGTAAT 58.573 43.478 6.88 0.00 0.00 1.89
1030 1430 3.836949 CCTACTGCGGTAAGTTTCGTAA 58.163 45.455 6.88 0.00 0.00 3.18
1031 1431 2.415893 GCCTACTGCGGTAAGTTTCGTA 60.416 50.000 6.88 0.00 0.00 3.43
1032 1432 1.670967 GCCTACTGCGGTAAGTTTCGT 60.671 52.381 6.88 0.00 0.00 3.85
1033 1433 0.997196 GCCTACTGCGGTAAGTTTCG 59.003 55.000 6.88 0.00 0.00 3.46
1044 1444 1.687494 CGAACTCAAGCGCCTACTGC 61.687 60.000 2.29 0.00 0.00 4.40
1045 1445 0.388649 ACGAACTCAAGCGCCTACTG 60.389 55.000 2.29 0.00 0.00 2.74
1046 1446 0.109226 GACGAACTCAAGCGCCTACT 60.109 55.000 2.29 0.00 0.00 2.57
1047 1447 1.077089 GGACGAACTCAAGCGCCTAC 61.077 60.000 2.29 0.00 0.00 3.18
1048 1448 1.214589 GGACGAACTCAAGCGCCTA 59.785 57.895 2.29 0.00 0.00 3.93
1049 1449 2.048127 GGACGAACTCAAGCGCCT 60.048 61.111 2.29 0.00 0.00 5.52
1050 1450 2.048127 AGGACGAACTCAAGCGCC 60.048 61.111 2.29 0.00 0.00 6.53
1051 1451 2.095252 GGAGGACGAACTCAAGCGC 61.095 63.158 0.00 0.00 39.27 5.92
1052 1452 4.170723 GGAGGACGAACTCAAGCG 57.829 61.111 11.89 0.00 39.27 4.68
1064 1464 3.935456 TTTAGGGCTGGGCGGAGGA 62.935 63.158 0.00 0.00 0.00 3.71
1065 1465 2.493273 TTTTTAGGGCTGGGCGGAGG 62.493 60.000 0.00 0.00 0.00 4.30
1066 1466 1.001393 TTTTTAGGGCTGGGCGGAG 60.001 57.895 0.00 0.00 0.00 4.63
1067 1467 3.172335 TTTTTAGGGCTGGGCGGA 58.828 55.556 0.00 0.00 0.00 5.54
1121 1521 2.021457 GAGAGGAGAGAAGGAAGGACG 58.979 57.143 0.00 0.00 0.00 4.79
1127 1527 3.189606 AGAGAGTGAGAGGAGAGAAGGA 58.810 50.000 0.00 0.00 0.00 3.36
1128 1528 3.200825 AGAGAGAGTGAGAGGAGAGAAGG 59.799 52.174 0.00 0.00 0.00 3.46
1131 1531 3.449918 TGAGAGAGAGTGAGAGGAGAGA 58.550 50.000 0.00 0.00 0.00 3.10
1132 1532 3.912496 TGAGAGAGAGTGAGAGGAGAG 57.088 52.381 0.00 0.00 0.00 3.20
1133 1533 4.042809 ACTTTGAGAGAGAGTGAGAGGAGA 59.957 45.833 0.00 0.00 0.00 3.71
1134 1534 4.335416 ACTTTGAGAGAGAGTGAGAGGAG 58.665 47.826 0.00 0.00 0.00 3.69
1135 1535 4.042809 AGACTTTGAGAGAGAGTGAGAGGA 59.957 45.833 0.00 0.00 0.00 3.71
1136 1536 4.335416 AGACTTTGAGAGAGAGTGAGAGG 58.665 47.826 0.00 0.00 0.00 3.69
1142 1542 5.385198 AGACTTGAGACTTTGAGAGAGAGT 58.615 41.667 0.00 0.00 0.00 3.24
1152 1552 2.103263 AGCGGTTGAGACTTGAGACTTT 59.897 45.455 0.00 0.00 0.00 2.66
1153 1553 1.689273 AGCGGTTGAGACTTGAGACTT 59.311 47.619 0.00 0.00 0.00 3.01
1154 1554 1.000283 CAGCGGTTGAGACTTGAGACT 60.000 52.381 0.00 0.00 0.00 3.24
1155 1555 1.423395 CAGCGGTTGAGACTTGAGAC 58.577 55.000 0.00 0.00 0.00 3.36
1156 1556 0.319900 GCAGCGGTTGAGACTTGAGA 60.320 55.000 0.00 0.00 0.00 3.27
1157 1557 1.294659 GGCAGCGGTTGAGACTTGAG 61.295 60.000 0.00 0.00 0.00 3.02
1158 1558 1.301716 GGCAGCGGTTGAGACTTGA 60.302 57.895 0.00 0.00 0.00 3.02
1159 1559 2.671177 CGGCAGCGGTTGAGACTTG 61.671 63.158 0.00 0.00 0.00 3.16
1160 1560 2.357517 CGGCAGCGGTTGAGACTT 60.358 61.111 0.00 0.00 0.00 3.01
1227 1627 1.826054 CGATCTCTGCCTCCTCCGT 60.826 63.158 0.00 0.00 0.00 4.69
1242 1642 2.203422 CTCCTCCTCGGCCTCGAT 60.203 66.667 0.00 0.00 45.04 3.59
1417 1817 1.834896 GGAGGAAGAAGAGGGGAAGAC 59.165 57.143 0.00 0.00 0.00 3.01
1445 1845 4.719026 AGACGGGTAGTGGATAGTATCA 57.281 45.455 12.19 0.00 0.00 2.15
1462 1865 6.115450 GGTTAAACCTGGCTAATAAAGACG 57.885 41.667 0.00 0.00 35.07 4.18
1508 1922 4.989875 AGGAGCAATGCAATATACTCCT 57.010 40.909 16.84 16.84 42.17 3.69
1509 1923 5.334414 CGAAAGGAGCAATGCAATATACTCC 60.334 44.000 8.35 13.70 39.06 3.85
1510 1924 5.237344 ACGAAAGGAGCAATGCAATATACTC 59.763 40.000 8.35 0.00 0.00 2.59
1511 1925 5.008019 CACGAAAGGAGCAATGCAATATACT 59.992 40.000 8.35 0.00 0.00 2.12
1512 1926 5.007626 TCACGAAAGGAGCAATGCAATATAC 59.992 40.000 8.35 0.00 0.00 1.47
1513 1927 5.122519 TCACGAAAGGAGCAATGCAATATA 58.877 37.500 8.35 0.00 0.00 0.86
1514 1928 3.947196 TCACGAAAGGAGCAATGCAATAT 59.053 39.130 8.35 0.00 0.00 1.28
1563 1977 9.893305 GCATTAATTAGTTTTCACTGTTGTACT 57.107 29.630 0.00 0.00 34.06 2.73
1668 2083 3.943381 GCGGGGTAAATAAGTAAGCACTT 59.057 43.478 0.00 0.00 46.77 3.16
1669 2084 3.054948 TGCGGGGTAAATAAGTAAGCACT 60.055 43.478 0.00 0.00 36.19 4.40
1670 2085 3.272581 TGCGGGGTAAATAAGTAAGCAC 58.727 45.455 0.00 0.00 0.00 4.40
1671 2086 3.630892 TGCGGGGTAAATAAGTAAGCA 57.369 42.857 0.00 0.00 0.00 3.91
1672 2087 4.968812 TTTGCGGGGTAAATAAGTAAGC 57.031 40.909 0.00 0.00 0.00 3.09
1724 2139 3.751175 TCAGCCAGCATACACAAGTAAAC 59.249 43.478 0.00 0.00 33.13 2.01
1852 2272 1.341531 AGCTACGGCAAGGCACTATAG 59.658 52.381 0.00 0.00 41.70 1.31
1867 2288 3.582714 ATTTGAAAAGGCAGCAGCTAC 57.417 42.857 0.00 0.00 41.70 3.58
1916 2337 4.044317 ACCTAACTAGAGGAACAGAGGACA 59.956 45.833 4.52 0.00 39.15 4.02
1917 2338 4.602107 ACCTAACTAGAGGAACAGAGGAC 58.398 47.826 4.52 0.00 39.15 3.85
1962 2383 3.753272 GAGGTAGCAGCACATCTGAAAAA 59.247 43.478 0.00 0.00 45.72 1.94
1986 2407 4.095946 AGCAATCTAATGAAAAAGGCCCA 58.904 39.130 0.00 0.00 0.00 5.36
2021 2442 0.891373 GTGAGACCACAGCTAGCAGA 59.109 55.000 18.83 0.00 42.72 4.26
2050 2471 6.071391 TGCTTTGTCCCAAAGATCCTAAATTC 60.071 38.462 18.25 0.46 0.00 2.17
2134 2814 7.225931 GGTAGTAATATTCACATCCGCAAAAGA 59.774 37.037 0.00 0.00 0.00 2.52
2136 2816 7.051623 AGGTAGTAATATTCACATCCGCAAAA 58.948 34.615 0.00 0.00 0.00 2.44
2137 2817 6.588204 AGGTAGTAATATTCACATCCGCAAA 58.412 36.000 0.00 0.00 0.00 3.68
2138 2818 6.041637 AGAGGTAGTAATATTCACATCCGCAA 59.958 38.462 0.00 0.00 0.00 4.85
2139 2819 5.538813 AGAGGTAGTAATATTCACATCCGCA 59.461 40.000 0.00 0.00 0.00 5.69
2140 2820 5.864474 CAGAGGTAGTAATATTCACATCCGC 59.136 44.000 0.00 0.00 0.00 5.54
2141 2821 6.982852 ACAGAGGTAGTAATATTCACATCCG 58.017 40.000 0.00 0.00 0.00 4.18
2146 2826 9.694137 GGTCATAACAGAGGTAGTAATATTCAC 57.306 37.037 0.00 0.00 0.00 3.18
2147 2827 8.573885 CGGTCATAACAGAGGTAGTAATATTCA 58.426 37.037 0.00 0.00 0.00 2.57
2148 2828 8.027771 CCGGTCATAACAGAGGTAGTAATATTC 58.972 40.741 0.00 0.00 0.00 1.75
2149 2829 7.525029 GCCGGTCATAACAGAGGTAGTAATATT 60.525 40.741 1.90 0.00 0.00 1.28
2150 2830 6.071503 GCCGGTCATAACAGAGGTAGTAATAT 60.072 42.308 1.90 0.00 0.00 1.28
2151 2831 5.242393 GCCGGTCATAACAGAGGTAGTAATA 59.758 44.000 1.90 0.00 0.00 0.98
2152 2832 4.038883 GCCGGTCATAACAGAGGTAGTAAT 59.961 45.833 1.90 0.00 0.00 1.89
2153 2833 3.382546 GCCGGTCATAACAGAGGTAGTAA 59.617 47.826 1.90 0.00 0.00 2.24
2154 2834 2.954318 GCCGGTCATAACAGAGGTAGTA 59.046 50.000 1.90 0.00 0.00 1.82
2155 2835 1.755380 GCCGGTCATAACAGAGGTAGT 59.245 52.381 1.90 0.00 0.00 2.73
2156 2836 1.754803 TGCCGGTCATAACAGAGGTAG 59.245 52.381 1.90 0.00 0.00 3.18
2157 2837 1.855295 TGCCGGTCATAACAGAGGTA 58.145 50.000 1.90 0.00 0.00 3.08
2158 2838 1.134401 CATGCCGGTCATAACAGAGGT 60.134 52.381 1.90 0.00 33.19 3.85
2159 2839 1.134401 ACATGCCGGTCATAACAGAGG 60.134 52.381 1.90 0.00 33.19 3.69
2160 2840 2.315925 ACATGCCGGTCATAACAGAG 57.684 50.000 1.90 0.00 33.19 3.35
2161 2841 2.779755 AACATGCCGGTCATAACAGA 57.220 45.000 1.90 0.00 33.19 3.41
2202 2882 3.511477 ACGATAAGATAGACTGGGCCAT 58.489 45.455 6.72 0.00 0.00 4.40
2217 2897 5.156608 GGCTAAGCCCCTAATAACGATAA 57.843 43.478 0.00 0.00 44.06 1.75
2218 2898 4.813750 GGCTAAGCCCCTAATAACGATA 57.186 45.455 0.00 0.00 44.06 2.92
2219 2899 3.697619 GGCTAAGCCCCTAATAACGAT 57.302 47.619 0.00 0.00 44.06 3.73
2242 2922 5.742063 GGCTAAGCCCCTAATAACGATAAT 58.258 41.667 0.00 0.00 44.06 1.28
2405 3094 3.008517 TGGGAGGAAGATGGCGCA 61.009 61.111 10.83 0.00 0.00 6.09
2515 3204 3.684408 ACTAGGGTTCTACCGGATCTT 57.316 47.619 9.46 0.00 39.83 2.40
2519 3208 3.463048 AGAAACTAGGGTTCTACCGGA 57.537 47.619 9.46 0.00 39.83 5.14
2563 3252 1.804748 GGTGAAGACATGGTCGAAACC 59.195 52.381 0.00 0.00 46.66 3.27
2571 3260 0.110295 TGGTGGTGGTGAAGACATGG 59.890 55.000 0.00 0.00 0.00 3.66
2584 3273 1.973281 CAGCGGCAGAATTGGTGGT 60.973 57.895 1.45 0.00 0.00 4.16
2590 3279 3.064324 GTGGGCAGCGGCAGAATT 61.064 61.111 11.88 0.00 43.71 2.17
2622 3362 4.271816 CGGTGGAGAGGATCGGCG 62.272 72.222 0.00 0.00 42.67 6.46
2626 3366 4.593864 GGCGCGGTGGAGAGGATC 62.594 72.222 8.83 0.00 0.00 3.36
2645 3400 4.087892 CTGACCGGTGGAGCCCAG 62.088 72.222 14.63 8.30 32.34 4.45
2646 3401 4.954118 ACTGACCGGTGGAGCCCA 62.954 66.667 14.63 0.29 0.00 5.36
2647 3402 4.083862 GACTGACCGGTGGAGCCC 62.084 72.222 14.63 0.00 0.00 5.19
2648 3403 4.436998 CGACTGACCGGTGGAGCC 62.437 72.222 14.63 0.00 0.00 4.70
2706 3461 3.075005 GGGAGTAGACCAGCGGCA 61.075 66.667 1.45 0.00 0.00 5.69
2716 3471 0.830648 TGATTTCTGCCGGGGAGTAG 59.169 55.000 15.63 0.00 0.00 2.57
2731 3489 1.375523 GTTGAGGACGCCGGTGATT 60.376 57.895 24.59 6.17 0.00 2.57
2814 3713 2.736995 CGATGGTTGGTGACGCGT 60.737 61.111 13.85 13.85 0.00 6.01
2842 3741 1.898094 TTGCCACGACAGCAGCATT 60.898 52.632 0.00 0.00 42.17 3.56
3096 4294 2.967397 CGGTTGTAGTCAGCCCGA 59.033 61.111 0.00 0.00 41.03 5.14
3163 4361 3.570212 AACCAGGCCGGAAGCTGT 61.570 61.111 18.74 0.00 43.05 4.40
3349 4562 3.061231 TACGGCTCGGCGGTACAA 61.061 61.111 17.11 0.00 41.95 2.41
3404 4650 1.003839 TGGCGAAATCGAGCTTGGT 60.004 52.632 7.06 0.00 43.02 3.67
3415 4661 2.259204 CCGTCGTAGGTGGCGAAA 59.741 61.111 0.00 0.00 40.19 3.46
3489 4735 2.506217 GTTCCGATGCGAGCGTGA 60.506 61.111 0.00 0.00 0.00 4.35
3499 4745 1.375523 GAACCAGGTGCGTTCCGAT 60.376 57.895 0.00 0.00 34.75 4.18
3515 4761 2.509052 CGAAGGTGATATGAGGCGAA 57.491 50.000 0.00 0.00 0.00 4.70
3539 4785 1.203994 GTAGTACCACATCTGTGCGGT 59.796 52.381 4.77 1.60 43.08 5.68
3606 4853 2.659016 CGAAGGAGGCACAGCTCA 59.341 61.111 0.00 0.00 0.00 4.26
3612 4859 2.815647 CCGAAGCGAAGGAGGCAC 60.816 66.667 0.00 0.00 0.00 5.01
3686 4933 4.680237 CGGCGAAGTCCTGCACCA 62.680 66.667 0.00 0.00 0.00 4.17
3885 5132 4.101448 GCCCAGGACGGTGATGCT 62.101 66.667 0.00 0.00 0.00 3.79
4272 5543 4.369182 CATAACTAACTGGACTAAGCCCG 58.631 47.826 0.00 0.00 0.00 6.13
4292 5563 3.511477 ACGATAAGATAGACTGGGCCAT 58.489 45.455 6.72 0.00 0.00 4.40
4377 5712 8.469200 CATTAGATTGATACATCTCCTCTCCTC 58.531 40.741 0.00 0.00 0.00 3.71
4430 5774 2.066999 CCGGCTCCCTAAGGAAGCT 61.067 63.158 5.22 0.00 43.40 3.74
4625 13937 6.487331 ACCTACCAAAACGTCATACATTTTGA 59.513 34.615 11.61 0.00 43.07 2.69
4632 13944 7.425577 AAACTAACCTACCAAAACGTCATAC 57.574 36.000 0.00 0.00 0.00 2.39
4646 13958 7.692172 ACATTTTGGTAGGCTAAACTAACCTA 58.308 34.615 0.00 0.00 34.92 3.08
4647 13959 6.549242 ACATTTTGGTAGGCTAAACTAACCT 58.451 36.000 0.00 0.00 37.61 3.50
4648 13960 6.431852 TGACATTTTGGTAGGCTAAACTAACC 59.568 38.462 0.00 0.00 29.41 2.85
4649 13961 7.443259 TGACATTTTGGTAGGCTAAACTAAC 57.557 36.000 0.00 0.00 0.00 2.34
4650 13962 9.914834 ATATGACATTTTGGTAGGCTAAACTAA 57.085 29.630 0.00 0.00 0.00 2.24
4664 13976 6.977502 TCCGTGCCAAAATATATGACATTTTG 59.022 34.615 12.38 12.38 46.10 2.44
4665 13977 7.106439 TCCGTGCCAAAATATATGACATTTT 57.894 32.000 0.00 0.00 36.31 1.82
4666 13978 6.239008 CCTCCGTGCCAAAATATATGACATTT 60.239 38.462 0.00 0.00 0.00 2.32
4667 13979 5.241506 CCTCCGTGCCAAAATATATGACATT 59.758 40.000 0.00 0.00 0.00 2.71
4668 13980 4.761739 CCTCCGTGCCAAAATATATGACAT 59.238 41.667 0.00 0.00 0.00 3.06
4669 13981 4.133820 CCTCCGTGCCAAAATATATGACA 58.866 43.478 0.00 0.00 0.00 3.58
4670 13982 4.134563 ACCTCCGTGCCAAAATATATGAC 58.865 43.478 0.00 0.00 0.00 3.06
4671 13983 4.431416 ACCTCCGTGCCAAAATATATGA 57.569 40.909 0.00 0.00 0.00 2.15
4672 13984 5.305585 ACTACCTCCGTGCCAAAATATATG 58.694 41.667 0.00 0.00 0.00 1.78
4673 13985 5.562298 ACTACCTCCGTGCCAAAATATAT 57.438 39.130 0.00 0.00 0.00 0.86
4674 13986 6.268158 TGATACTACCTCCGTGCCAAAATATA 59.732 38.462 0.00 0.00 0.00 0.86
4675 13987 3.926058 ACTACCTCCGTGCCAAAATAT 57.074 42.857 0.00 0.00 0.00 1.28
4676 13988 4.406326 TGATACTACCTCCGTGCCAAAATA 59.594 41.667 0.00 0.00 0.00 1.40
4677 13989 3.199071 TGATACTACCTCCGTGCCAAAAT 59.801 43.478 0.00 0.00 0.00 1.82
4678 13990 2.568062 TGATACTACCTCCGTGCCAAAA 59.432 45.455 0.00 0.00 0.00 2.44
4679 13991 2.093869 GTGATACTACCTCCGTGCCAAA 60.094 50.000 0.00 0.00 0.00 3.28
4680 13992 1.479323 GTGATACTACCTCCGTGCCAA 59.521 52.381 0.00 0.00 0.00 4.52
4681 13993 1.108776 GTGATACTACCTCCGTGCCA 58.891 55.000 0.00 0.00 0.00 4.92
4682 13994 1.108776 TGTGATACTACCTCCGTGCC 58.891 55.000 0.00 0.00 0.00 5.01
4683 13995 1.475280 TGTGTGATACTACCTCCGTGC 59.525 52.381 0.00 0.00 0.00 5.34
4689 14001 1.838077 GGGGCTTGTGTGATACTACCT 59.162 52.381 0.00 0.00 0.00 3.08
4694 14006 2.290323 ACTCTTGGGGCTTGTGTGATAC 60.290 50.000 0.00 0.00 0.00 2.24
4840 15569 4.503910 ACTGCTGCAGTAATCGTATTTCA 58.496 39.130 32.18 0.00 43.46 2.69
4842 15571 4.508124 GCTACTGCTGCAGTAATCGTATTT 59.492 41.667 34.27 14.03 44.80 1.40
4852 15581 1.065926 TGCTATTGCTACTGCTGCAGT 60.066 47.619 34.54 34.54 41.71 4.40
4865 15594 6.484308 TCACATCACATAATCTGGTGCTATTG 59.516 38.462 0.00 0.00 35.04 1.90
4867 15596 6.178607 TCACATCACATAATCTGGTGCTAT 57.821 37.500 0.00 0.00 35.04 2.97
4871 15600 6.541278 AGTTCATCACATCACATAATCTGGTG 59.459 38.462 0.00 0.00 36.36 4.17
4892 15621 3.821033 ACTGACAGGGCATAAACAAGTTC 59.179 43.478 7.51 0.00 0.00 3.01
4909 15639 9.818796 GAGATAAAATGAACAGAGAAAACTGAC 57.181 33.333 0.00 0.00 40.63 3.51
5057 15787 4.594367 GCAAAATGGATTGCGGCA 57.406 50.000 0.00 0.00 45.37 5.69
5429 16159 0.251832 TCTTCCTCTTCTCGCCCTGT 60.252 55.000 0.00 0.00 0.00 4.00
5478 16208 1.415672 TTGGCCTTCTTCACCTCCGT 61.416 55.000 3.32 0.00 0.00 4.69
5595 16325 5.125100 ACAATGGATAACACAGCAAACAG 57.875 39.130 0.00 0.00 0.00 3.16
5599 16329 6.403866 AAAGAACAATGGATAACACAGCAA 57.596 33.333 0.00 0.00 0.00 3.91
5646 16376 5.334182 GGACAGCTAAAACTCTTACACTTGC 60.334 44.000 0.00 0.00 0.00 4.01
5647 16377 5.758296 TGGACAGCTAAAACTCTTACACTTG 59.242 40.000 0.00 0.00 0.00 3.16
5796 16535 9.606631 ATCAAAATTAAAAACCACAGCACTTAA 57.393 25.926 0.00 0.00 0.00 1.85
5798 16537 7.012232 CCATCAAAATTAAAAACCACAGCACTT 59.988 33.333 0.00 0.00 0.00 3.16
5820 16559 6.933521 ACACAGACAGCAGATAATATTCCATC 59.066 38.462 0.00 0.00 0.00 3.51
5870 16609 7.069331 TCCCATTTTGTTTGAGATTACAACAGT 59.931 33.333 0.00 0.00 34.25 3.55
5871 16610 7.432869 TCCCATTTTGTTTGAGATTACAACAG 58.567 34.615 0.00 0.00 34.25 3.16
5902 16641 1.396607 GGGTTGGGCCGTTGTCTTTT 61.397 55.000 0.00 0.00 38.44 2.27
6423 17172 0.178767 CAGATTCGGAGTCCATGGCA 59.821 55.000 6.96 0.00 0.00 4.92
6438 17187 0.387202 CGAAGAGCCGGATGTCAGAT 59.613 55.000 5.05 0.00 0.00 2.90
6509 17258 1.071071 CAACCCTACACAAACCGAGGA 59.929 52.381 0.00 0.00 0.00 3.71
6565 17318 6.299141 AGATGACCATGTGGGATAATGTAAC 58.701 40.000 3.77 0.00 41.15 2.50
6646 17401 3.067180 AGCCCATATCAAATCAAACAGCG 59.933 43.478 0.00 0.00 0.00 5.18
6664 17419 2.423538 ACGATTTTGATTAGTGCAGCCC 59.576 45.455 0.00 0.00 0.00 5.19
6684 17439 5.299531 TGAGTCTACTACATATGCAGGTCAC 59.700 44.000 7.85 1.08 0.00 3.67
6715 17473 1.279496 TGGCCTACTGCTGTGAATCT 58.721 50.000 3.32 0.00 40.92 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.