Multiple sequence alignment - TraesCS1B01G212800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G212800 chr1B 100.000 4731 0 0 1 4731 386269316 386264586 0.000000e+00 8737.0
1 TraesCS1B01G212800 chr1B 100.000 2252 0 0 5120 7371 386264197 386261946 0.000000e+00 4159.0
2 TraesCS1B01G212800 chr1B 88.752 729 62 9 5876 6586 672851666 672852392 0.000000e+00 874.0
3 TraesCS1B01G212800 chr1B 100.000 148 0 0 3595 3742 386265575 386265428 2.620000e-69 274.0
4 TraesCS1B01G212800 chr1B 100.000 148 0 0 3742 3889 386265722 386265575 2.620000e-69 274.0
5 TraesCS1B01G212800 chr1B 81.199 367 40 19 5493 5850 672850455 672850801 1.220000e-67 268.0
6 TraesCS1B01G212800 chr1B 97.647 85 2 0 147 231 12559398 12559314 5.960000e-31 147.0
7 TraesCS1B01G212800 chr1B 93.069 101 5 2 133 231 461801971 461802071 5.960000e-31 147.0
8 TraesCS1B01G212800 chr1B 86.957 115 13 1 6691 6805 569514289 569514177 2.160000e-25 128.0
9 TraesCS1B01G212800 chr1D 96.738 3188 81 18 568 3742 284306063 284302886 0.000000e+00 5289.0
10 TraesCS1B01G212800 chr1D 93.947 1999 62 21 5242 7199 284301558 284299578 0.000000e+00 2966.0
11 TraesCS1B01G212800 chr1D 90.130 1003 39 23 3743 4731 284303029 284302073 0.000000e+00 1249.0
12 TraesCS1B01G212800 chr1D 92.818 181 13 0 5495 5675 7197370 7197550 5.670000e-66 263.0
13 TraesCS1B01G212800 chr1D 97.581 124 3 0 5120 5243 284301713 284301590 5.790000e-51 213.0
14 TraesCS1B01G212800 chr1D 87.879 99 7 5 6691 6787 147881431 147881336 2.170000e-20 111.0
15 TraesCS1B01G212800 chr1A 96.243 2981 87 14 571 3532 355735687 355732713 0.000000e+00 4861.0
16 TraesCS1B01G212800 chr1A 96.096 1588 41 12 5242 6822 355731760 355730187 0.000000e+00 2569.0
17 TraesCS1B01G212800 chr1A 88.298 752 29 17 4030 4727 355732694 355731948 0.000000e+00 846.0
18 TraesCS1B01G212800 chr1A 96.800 125 3 1 5120 5243 355731916 355731792 2.700000e-49 207.0
19 TraesCS1B01G212800 chr1A 88.312 154 17 1 1 154 355736287 355736135 4.540000e-42 183.0
20 TraesCS1B01G212800 chr1A 88.571 140 9 2 6798 6937 355730166 355730034 5.920000e-36 163.0
21 TraesCS1B01G212800 chr7D 88.477 729 66 4 5876 6586 568318279 568317551 0.000000e+00 865.0
22 TraesCS1B01G212800 chr7D 80.601 366 44 18 5493 5850 568319512 568319166 2.640000e-64 257.0
23 TraesCS1B01G212800 chr7D 94.286 35 2 0 528 562 156200143 156200177 4.000000e-03 54.7
24 TraesCS1B01G212800 chr7D 100.000 29 0 0 4461 4489 559225265 559225293 4.000000e-03 54.7
25 TraesCS1B01G212800 chr7D 92.105 38 2 1 525 562 59471383 59471347 1.300000e-02 52.8
26 TraesCS1B01G212800 chr2B 87.742 310 28 3 6173 6482 745507206 745507505 3.270000e-93 353.0
27 TraesCS1B01G212800 chr2B 84.488 303 29 6 5877 6179 745494906 745495190 4.350000e-72 283.0
28 TraesCS1B01G212800 chr2B 100.000 32 0 0 531 562 723264957 723264926 7.990000e-05 60.2
29 TraesCS1B01G212800 chr4B 98.824 85 1 0 147 231 462753602 462753518 1.280000e-32 152.0
30 TraesCS1B01G212800 chr5B 96.667 90 3 0 142 231 344195080 344194991 4.610000e-32 150.0
31 TraesCS1B01G212800 chr5B 100.000 29 0 0 4462 4490 284372843 284372871 4.000000e-03 54.7
32 TraesCS1B01G212800 chr5B 100.000 29 0 0 4544 4572 642878265 642878237 4.000000e-03 54.7
33 TraesCS1B01G212800 chrUn 95.652 92 4 0 140 231 247542294 247542385 1.660000e-31 148.0
34 TraesCS1B01G212800 chrUn 95.652 92 4 0 140 231 248478071 248478162 1.660000e-31 148.0
35 TraesCS1B01G212800 chrUn 95.652 92 4 0 140 231 359219909 359220000 1.660000e-31 148.0
36 TraesCS1B01G212800 chrUn 95.652 92 4 0 140 231 359222013 359222104 1.660000e-31 148.0
37 TraesCS1B01G212800 chr6B 97.674 86 2 0 146 231 627916175 627916090 1.660000e-31 148.0
38 TraesCS1B01G212800 chr6B 100.000 31 0 0 532 562 372572344 372572314 2.870000e-04 58.4
39 TraesCS1B01G212800 chr6B 96.970 33 1 0 530 562 9669693 9669661 1.000000e-03 56.5
40 TraesCS1B01G212800 chr6D 89.320 103 11 0 5574 5676 37682809 37682707 6.000000e-26 130.0
41 TraesCS1B01G212800 chr2D 89.320 103 11 0 5574 5676 191027506 191027404 6.000000e-26 130.0
42 TraesCS1B01G212800 chr3B 88.158 76 8 1 6694 6768 31102962 31103037 1.020000e-13 89.8
43 TraesCS1B01G212800 chr3B 94.286 35 2 0 529 563 751753470 751753436 4.000000e-03 54.7
44 TraesCS1B01G212800 chr7A 91.667 48 3 1 4388 4434 694792682 694792635 1.720000e-06 65.8
45 TraesCS1B01G212800 chr7A 91.667 48 3 1 4388 4434 694930246 694930199 1.720000e-06 65.8
46 TraesCS1B01G212800 chr7A 91.667 48 3 1 4388 4434 695056493 695056446 1.720000e-06 65.8
47 TraesCS1B01G212800 chr7A 91.489 47 3 1 4388 4433 694970798 694970752 6.170000e-06 63.9
48 TraesCS1B01G212800 chr7A 100.000 30 0 0 534 563 30262280 30262251 1.000000e-03 56.5
49 TraesCS1B01G212800 chr7A 100.000 29 0 0 4537 4565 173636014 173635986 4.000000e-03 54.7
50 TraesCS1B01G212800 chr5A 97.059 34 1 0 530 563 481940341 481940374 2.870000e-04 58.4
51 TraesCS1B01G212800 chr7B 96.970 33 0 1 530 562 745107405 745107374 4.000000e-03 54.7
52 TraesCS1B01G212800 chr5D 100.000 28 0 0 4462 4489 372097397 372097370 1.300000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G212800 chr1B 386261946 386269316 7370 True 3361.00 8737 100.000000 1 7371 4 chr1B.!!$R3 7370
1 TraesCS1B01G212800 chr1B 672850455 672852392 1937 False 571.00 874 84.975500 5493 6586 2 chr1B.!!$F2 1093
2 TraesCS1B01G212800 chr1D 284299578 284306063 6485 True 2429.25 5289 94.599000 568 7199 4 chr1D.!!$R2 6631
3 TraesCS1B01G212800 chr1A 355730034 355736287 6253 True 1471.50 4861 92.386667 1 6937 6 chr1A.!!$R1 6936
4 TraesCS1B01G212800 chr7D 568317551 568319512 1961 True 561.00 865 84.539000 5493 6586 2 chr7D.!!$R2 1093

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
183 184 0.033405 ATTTGCCATCAGCCAGCTCT 60.033 50.000 0.00 0.00 42.71 4.09 F
458 459 0.105039 CCTCCATAGCGAGGTGGTTC 59.895 60.000 0.00 0.00 43.94 3.62 F
1880 2003 0.823460 TCATGCCTCACGCTGATACA 59.177 50.000 0.00 0.00 38.78 2.29 F
3741 3876 0.179012 AGTAGGGAGACTCTAGCCGC 60.179 60.000 1.74 0.00 0.00 6.53 F
3771 3906 0.035317 TGCCCCGCAATAGCTATCTG 59.965 55.000 6.72 8.81 39.10 2.90 F
4555 4742 0.178068 CGGATGATTTGAGGGTCCGT 59.822 55.000 4.09 0.00 44.94 4.69 F
5558 5782 1.135575 CAGCCAGGCGAGAAAATTGTC 60.136 52.381 5.55 0.00 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1695 1816 1.207811 TGGAGAATCATGCTGCTCGAA 59.792 47.619 0.00 0.0 36.25 3.71 R
2263 2388 2.366916 TCCAATCAACGGCCAAAATTGT 59.633 40.909 2.24 0.0 0.00 2.71 R
3752 3887 0.035317 CAGATAGCTATTGCGGGGCA 59.965 55.000 7.87 0.0 45.42 5.36 R
5676 5905 3.252974 AGCTTTCCACTAATCAGGTCG 57.747 47.619 0.00 0.0 0.00 4.79 R
5857 6103 4.292186 ACAAGACTTGTGATGCCTACAT 57.708 40.909 19.96 0.0 43.48 2.29 R
6258 7384 2.930040 CAAACGGCTTACTGATCGTCAT 59.070 45.455 0.00 0.0 34.60 3.06 R
7219 8414 0.105039 CGTAGCCACAAGAGGGGATC 59.895 60.000 0.00 0.0 0.00 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.990959 CTTCCTAGTTCTTCCCAAGCT 57.009 47.619 0.00 0.00 0.00 3.74
21 22 4.293662 CTTCCTAGTTCTTCCCAAGCTT 57.706 45.455 0.00 0.00 0.00 3.74
27 28 4.227864 AGTTCTTCCCAAGCTTAGATGG 57.772 45.455 0.00 0.00 36.42 3.51
31 32 0.839946 TCCCAAGCTTAGATGGAGGC 59.160 55.000 0.00 0.00 39.12 4.70
42 43 6.891908 AGCTTAGATGGAGGCAAGATTTAAAA 59.108 34.615 0.00 0.00 0.00 1.52
63 64 5.927954 AAAACCATGCACAACATCAAATC 57.072 34.783 0.00 0.00 36.64 2.17
65 66 4.445452 ACCATGCACAACATCAAATCTC 57.555 40.909 0.00 0.00 36.64 2.75
74 75 4.516698 ACAACATCAAATCTCACACCTCAC 59.483 41.667 0.00 0.00 0.00 3.51
78 79 4.271696 TCAAATCTCACACCTCACGAAT 57.728 40.909 0.00 0.00 0.00 3.34
79 80 3.996363 TCAAATCTCACACCTCACGAATG 59.004 43.478 0.00 0.00 0.00 2.67
90 91 2.482721 CCTCACGAATGTACAACCCAAC 59.517 50.000 0.00 0.00 0.00 3.77
91 92 2.482721 CTCACGAATGTACAACCCAACC 59.517 50.000 0.00 0.00 0.00 3.77
110 111 5.364778 CAACCATGAGGGATATCAAACGTA 58.635 41.667 4.83 0.00 41.15 3.57
115 116 7.824289 ACCATGAGGGATATCAAACGTATAATG 59.176 37.037 4.83 0.00 41.15 1.90
146 147 3.963428 TTGCTCTCAGGGTCTTAACTC 57.037 47.619 0.00 0.00 0.00 3.01
147 148 2.889512 TGCTCTCAGGGTCTTAACTCA 58.110 47.619 0.00 0.00 0.00 3.41
149 150 2.829120 GCTCTCAGGGTCTTAACTCACT 59.171 50.000 0.00 0.00 0.00 3.41
150 151 4.017808 GCTCTCAGGGTCTTAACTCACTA 58.982 47.826 0.00 0.00 0.00 2.74
151 152 4.142337 GCTCTCAGGGTCTTAACTCACTAC 60.142 50.000 0.00 0.00 0.00 2.73
152 153 5.258051 CTCTCAGGGTCTTAACTCACTACT 58.742 45.833 0.00 0.00 0.00 2.57
153 154 5.010933 TCTCAGGGTCTTAACTCACTACTG 58.989 45.833 0.00 0.00 0.00 2.74
154 155 4.087182 TCAGGGTCTTAACTCACTACTGG 58.913 47.826 0.00 0.00 0.00 4.00
155 156 4.087182 CAGGGTCTTAACTCACTACTGGA 58.913 47.826 0.00 0.00 0.00 3.86
156 157 4.527038 CAGGGTCTTAACTCACTACTGGAA 59.473 45.833 0.00 0.00 0.00 3.53
157 158 5.011738 CAGGGTCTTAACTCACTACTGGAAA 59.988 44.000 0.00 0.00 0.00 3.13
158 159 5.011840 AGGGTCTTAACTCACTACTGGAAAC 59.988 44.000 0.00 0.00 0.00 2.78
159 160 5.011840 GGGTCTTAACTCACTACTGGAAACT 59.988 44.000 0.00 0.00 0.00 2.66
160 161 6.210185 GGGTCTTAACTCACTACTGGAAACTA 59.790 42.308 0.00 0.00 0.00 2.24
161 162 7.314393 GGTCTTAACTCACTACTGGAAACTAG 58.686 42.308 0.00 0.00 0.00 2.57
162 163 7.314393 GTCTTAACTCACTACTGGAAACTAGG 58.686 42.308 0.00 0.00 0.00 3.02
163 164 7.176340 GTCTTAACTCACTACTGGAAACTAGGA 59.824 40.741 0.00 0.00 0.00 2.94
164 165 7.727186 TCTTAACTCACTACTGGAAACTAGGAA 59.273 37.037 0.00 0.00 0.00 3.36
165 166 6.936968 AACTCACTACTGGAAACTAGGAAT 57.063 37.500 0.00 0.00 0.00 3.01
166 167 6.936968 ACTCACTACTGGAAACTAGGAATT 57.063 37.500 0.00 0.00 0.00 2.17
167 168 7.317722 ACTCACTACTGGAAACTAGGAATTT 57.682 36.000 0.00 0.00 0.00 1.82
168 169 7.162082 ACTCACTACTGGAAACTAGGAATTTG 58.838 38.462 0.00 0.00 0.00 2.32
169 170 5.938125 TCACTACTGGAAACTAGGAATTTGC 59.062 40.000 0.00 0.00 0.00 3.68
170 171 5.123979 CACTACTGGAAACTAGGAATTTGCC 59.876 44.000 0.00 0.00 0.00 4.52
171 172 4.112634 ACTGGAAACTAGGAATTTGCCA 57.887 40.909 0.00 0.00 0.00 4.92
172 173 4.677182 ACTGGAAACTAGGAATTTGCCAT 58.323 39.130 0.00 0.00 0.00 4.40
173 174 4.706962 ACTGGAAACTAGGAATTTGCCATC 59.293 41.667 0.00 0.00 0.00 3.51
174 175 4.671831 TGGAAACTAGGAATTTGCCATCA 58.328 39.130 0.00 0.00 0.00 3.07
175 176 4.706476 TGGAAACTAGGAATTTGCCATCAG 59.294 41.667 0.00 0.00 0.00 2.90
176 177 4.440663 GGAAACTAGGAATTTGCCATCAGC 60.441 45.833 0.00 0.00 44.14 4.26
177 178 2.659428 ACTAGGAATTTGCCATCAGCC 58.341 47.619 0.00 0.00 42.71 4.85
178 179 2.025037 ACTAGGAATTTGCCATCAGCCA 60.025 45.455 0.00 0.00 42.71 4.75
179 180 1.481871 AGGAATTTGCCATCAGCCAG 58.518 50.000 0.00 0.00 42.71 4.85
180 181 0.179092 GGAATTTGCCATCAGCCAGC 60.179 55.000 0.00 0.00 42.71 4.85
181 182 0.822164 GAATTTGCCATCAGCCAGCT 59.178 50.000 0.00 0.00 42.71 4.24
182 183 0.822164 AATTTGCCATCAGCCAGCTC 59.178 50.000 0.00 0.00 42.71 4.09
183 184 0.033405 ATTTGCCATCAGCCAGCTCT 60.033 50.000 0.00 0.00 42.71 4.09
184 185 0.251474 TTTGCCATCAGCCAGCTCTT 60.251 50.000 0.00 0.00 42.71 2.85
185 186 0.251474 TTGCCATCAGCCAGCTCTTT 60.251 50.000 0.00 0.00 42.71 2.52
186 187 0.963856 TGCCATCAGCCAGCTCTTTG 60.964 55.000 0.00 0.00 42.71 2.77
187 188 1.807886 CCATCAGCCAGCTCTTTGC 59.192 57.895 0.00 0.00 43.29 3.68
188 189 1.664321 CCATCAGCCAGCTCTTTGCC 61.664 60.000 0.00 0.00 44.23 4.52
189 190 0.963856 CATCAGCCAGCTCTTTGCCA 60.964 55.000 0.00 0.00 44.23 4.92
190 191 0.033405 ATCAGCCAGCTCTTTGCCAT 60.033 50.000 0.00 0.00 44.23 4.40
191 192 0.679002 TCAGCCAGCTCTTTGCCATC 60.679 55.000 0.00 0.00 44.23 3.51
192 193 0.680280 CAGCCAGCTCTTTGCCATCT 60.680 55.000 0.00 0.00 44.23 2.90
193 194 0.680280 AGCCAGCTCTTTGCCATCTG 60.680 55.000 0.00 0.00 44.23 2.90
194 195 1.807886 CCAGCTCTTTGCCATCTGC 59.192 57.895 0.00 0.00 44.23 4.26
195 196 1.664321 CCAGCTCTTTGCCATCTGCC 61.664 60.000 0.00 0.00 44.23 4.85
196 197 0.963856 CAGCTCTTTGCCATCTGCCA 60.964 55.000 0.00 0.00 44.23 4.92
197 198 0.680280 AGCTCTTTGCCATCTGCCAG 60.680 55.000 0.00 0.00 44.23 4.85
198 199 1.807886 CTCTTTGCCATCTGCCAGC 59.192 57.895 0.00 0.00 40.16 4.85
199 200 0.680280 CTCTTTGCCATCTGCCAGCT 60.680 55.000 0.00 0.00 40.16 4.24
200 201 0.963856 TCTTTGCCATCTGCCAGCTG 60.964 55.000 6.78 6.78 40.16 4.24
201 202 0.963856 CTTTGCCATCTGCCAGCTGA 60.964 55.000 17.39 1.51 40.16 4.26
202 203 0.323999 TTTGCCATCTGCCAGCTGAT 60.324 50.000 17.39 6.23 40.16 2.90
203 204 1.035385 TTGCCATCTGCCAGCTGATG 61.035 55.000 24.57 24.57 45.69 3.07
213 214 0.169672 CCAGCTGATGGCAAAGAACG 59.830 55.000 17.39 0.00 43.83 3.95
214 215 0.877071 CAGCTGATGGCAAAGAACGT 59.123 50.000 8.42 0.00 44.79 3.99
215 216 1.135859 CAGCTGATGGCAAAGAACGTC 60.136 52.381 8.42 0.00 44.79 4.34
216 217 1.160137 GCTGATGGCAAAGAACGTCT 58.840 50.000 4.85 0.00 41.35 4.18
217 218 1.537202 GCTGATGGCAAAGAACGTCTT 59.463 47.619 4.85 0.00 38.59 3.01
218 219 2.030805 GCTGATGGCAAAGAACGTCTTT 60.031 45.455 4.85 7.04 46.75 2.52
231 232 4.926238 AGAACGTCTTTGTCATCTGCTTAG 59.074 41.667 0.00 0.00 0.00 2.18
238 239 5.942236 TCTTTGTCATCTGCTTAGCTTTCAT 59.058 36.000 5.60 0.00 0.00 2.57
244 245 7.094075 TGTCATCTGCTTAGCTTTCATTTTGAT 60.094 33.333 5.60 0.00 0.00 2.57
253 254 5.086621 AGCTTTCATTTTGATAGGGTGGTT 58.913 37.500 0.00 0.00 0.00 3.67
263 264 4.991776 TGATAGGGTGGTTGAATTTGTGA 58.008 39.130 0.00 0.00 0.00 3.58
265 266 3.312736 AGGGTGGTTGAATTTGTGACT 57.687 42.857 0.00 0.00 0.00 3.41
274 275 6.038825 TGGTTGAATTTGTGACTACGTCAAAT 59.961 34.615 6.39 6.39 44.49 2.32
276 277 6.852858 TGAATTTGTGACTACGTCAAATGA 57.147 33.333 11.53 1.86 44.49 2.57
278 279 7.870826 TGAATTTGTGACTACGTCAAATGATT 58.129 30.769 11.53 0.02 44.49 2.57
282 283 6.223138 TGTGACTACGTCAAATGATTGTTC 57.777 37.500 0.00 0.00 44.49 3.18
293 294 7.807433 CGTCAAATGATTGTTCCACTCAAATTA 59.193 33.333 0.00 0.00 37.79 1.40
301 302 6.533819 TGTTCCACTCAAATTAACGTGTAG 57.466 37.500 0.00 0.00 0.00 2.74
324 325 9.701355 GTAGTTAAGAGAAGAGTACACGTTATC 57.299 37.037 0.00 0.00 0.00 1.75
328 329 7.556733 AAGAGAAGAGTACACGTTATCTAGG 57.443 40.000 0.00 0.00 0.00 3.02
340 341 5.972382 CACGTTATCTAGGAAAGAGTAGTGC 59.028 44.000 0.00 0.00 37.74 4.40
347 348 2.229302 AGGAAAGAGTAGTGCGAGTGAC 59.771 50.000 0.00 0.00 0.00 3.67
359 360 1.411394 CGAGTGACGCGTTAGGAAAA 58.589 50.000 15.53 0.00 34.51 2.29
365 366 4.804139 AGTGACGCGTTAGGAAAATCTATG 59.196 41.667 15.53 0.00 0.00 2.23
377 378 5.415701 AGGAAAATCTATGCACGTTGATGTT 59.584 36.000 0.00 0.00 0.00 2.71
391 392 5.159925 CGTTGATGTTGTATCCATGCAAAA 58.840 37.500 0.00 0.00 34.26 2.44
392 393 5.286797 CGTTGATGTTGTATCCATGCAAAAG 59.713 40.000 0.00 0.00 34.26 2.27
399 400 5.733226 TGTATCCATGCAAAAGACGTATG 57.267 39.130 0.00 0.00 0.00 2.39
402 403 1.472082 CCATGCAAAAGACGTATGCCA 59.528 47.619 11.16 2.71 39.31 4.92
403 404 2.518949 CATGCAAAAGACGTATGCCAC 58.481 47.619 11.16 0.00 39.31 5.01
404 405 0.878416 TGCAAAAGACGTATGCCACC 59.122 50.000 11.16 0.00 39.31 4.61
410 411 0.907704 AGACGTATGCCACCAAGGGA 60.908 55.000 0.00 0.00 44.34 4.20
421 422 0.678950 ACCAAGGGACAAATTTGCCG 59.321 50.000 18.12 9.55 0.00 5.69
432 433 2.143876 AATTTGCCGAGCTACCCAAT 57.856 45.000 0.00 0.00 0.00 3.16
445 446 2.303660 ACCCAATTACCCTCCTCCAT 57.696 50.000 0.00 0.00 0.00 3.41
447 448 3.327439 ACCCAATTACCCTCCTCCATAG 58.673 50.000 0.00 0.00 0.00 2.23
458 459 0.105039 CCTCCATAGCGAGGTGGTTC 59.895 60.000 0.00 0.00 43.94 3.62
472 473 1.198094 TGGTTCCTTGGGATGCGAGA 61.198 55.000 0.00 0.00 0.00 4.04
479 481 2.154462 CTTGGGATGCGAGACAAAACT 58.846 47.619 0.00 0.00 0.00 2.66
480 482 2.270352 TGGGATGCGAGACAAAACTT 57.730 45.000 0.00 0.00 0.00 2.66
489 491 5.527951 TGCGAGACAAAACTTTATGCAATT 58.472 33.333 0.00 0.00 0.00 2.32
493 495 7.617935 GCGAGACAAAACTTTATGCAATTCAAG 60.618 37.037 0.00 0.00 0.00 3.02
514 516 9.707957 TTCAAGATAGGATAAATAAAGGGCAAA 57.292 29.630 0.00 0.00 0.00 3.68
521 523 5.924254 GGATAAATAAAGGGCAAATTACCGC 59.076 40.000 0.00 0.00 0.00 5.68
522 524 3.430333 AATAAAGGGCAAATTACCGCG 57.570 42.857 0.00 0.00 0.00 6.46
535 537 6.518736 GCAAATTACCGCGCTTCTATATAAAC 59.481 38.462 5.56 0.00 0.00 2.01
540 542 6.081872 ACCGCGCTTCTATATAAACTACTT 57.918 37.500 5.56 0.00 0.00 2.24
541 543 6.148264 ACCGCGCTTCTATATAAACTACTTC 58.852 40.000 5.56 0.00 0.00 3.01
544 546 6.523893 CGCGCTTCTATATAAACTACTTCCTC 59.476 42.308 5.56 0.00 0.00 3.71
546 548 7.022384 CGCTTCTATATAAACTACTTCCTCCG 58.978 42.308 0.00 0.00 0.00 4.63
549 551 7.992754 TCTATATAAACTACTTCCTCCGTCC 57.007 40.000 0.00 0.00 0.00 4.79
550 552 6.944862 TCTATATAAACTACTTCCTCCGTCCC 59.055 42.308 0.00 0.00 0.00 4.46
552 554 2.249309 AACTACTTCCTCCGTCCCAT 57.751 50.000 0.00 0.00 0.00 4.00
553 555 3.393426 AACTACTTCCTCCGTCCCATA 57.607 47.619 0.00 0.00 0.00 2.74
554 556 3.393426 ACTACTTCCTCCGTCCCATAA 57.607 47.619 0.00 0.00 0.00 1.90
555 557 3.924922 ACTACTTCCTCCGTCCCATAAT 58.075 45.455 0.00 0.00 0.00 1.28
556 558 3.641906 ACTACTTCCTCCGTCCCATAATG 59.358 47.826 0.00 0.00 0.00 1.90
558 560 3.649843 ACTTCCTCCGTCCCATAATGTA 58.350 45.455 0.00 0.00 0.00 2.29
559 561 4.035112 ACTTCCTCCGTCCCATAATGTAA 58.965 43.478 0.00 0.00 0.00 2.41
561 563 3.918566 TCCTCCGTCCCATAATGTAAGA 58.081 45.455 0.00 0.00 0.00 2.10
563 565 4.905456 TCCTCCGTCCCATAATGTAAGATT 59.095 41.667 0.00 0.00 0.00 2.40
564 566 6.079336 TCCTCCGTCCCATAATGTAAGATTA 58.921 40.000 0.00 0.00 0.00 1.75
566 568 6.354794 TCCGTCCCATAATGTAAGATTAGG 57.645 41.667 0.00 0.00 0.00 2.69
598 704 7.350744 TGTTTGCATGCCTATGAAATAAGAT 57.649 32.000 16.68 0.00 36.36 2.40
1182 1303 6.395629 CATCAAGAAGTTCAAGCAATCCAAT 58.604 36.000 5.50 0.00 0.00 3.16
1235 1356 6.372104 TCAGAGAGATCATGGTAACTCATCT 58.628 40.000 12.40 3.28 37.61 2.90
1307 1428 8.553153 CATATAGGACTGTAATCTCTCTCCCTA 58.447 40.741 0.00 0.00 0.00 3.53
1322 1443 1.305930 CCCTACGCTTGCCCTTTGAC 61.306 60.000 0.00 0.00 0.00 3.18
1452 1573 3.384168 ACCTCTATGTATGCAACTCCCA 58.616 45.455 0.00 0.00 0.00 4.37
1495 1616 3.319137 TTCATTCCTGTCGACCTCTTG 57.681 47.619 14.12 4.79 0.00 3.02
1524 1645 6.881065 TGAAATTCAAATCCAACTCTCTCGAT 59.119 34.615 0.00 0.00 0.00 3.59
1722 1843 2.753452 CAGCATGATTCTCCACAAGCTT 59.247 45.455 0.00 0.00 38.65 3.74
1880 2003 0.823460 TCATGCCTCACGCTGATACA 59.177 50.000 0.00 0.00 38.78 2.29
1993 2116 9.822185 GGAATTATAAAGATTGCTGATTTTGGT 57.178 29.630 0.00 0.00 0.00 3.67
2045 2168 2.224769 CCACTAAGTGACAATGGGGTGT 60.225 50.000 0.00 0.00 35.23 4.16
2161 2285 7.259161 CAAGTTACCACTAGTATTCTCAGGTC 58.741 42.308 0.00 0.00 30.68 3.85
2168 2292 2.472029 AGTATTCTCAGGTCCCCACTG 58.528 52.381 0.00 0.00 37.30 3.66
2232 2356 7.362662 CAAATATATTATCACACAGTGCACCC 58.637 38.462 14.63 0.00 32.98 4.61
2379 2505 8.202137 ACTCTAACTGTACATTAATTACGGCAT 58.798 33.333 0.00 7.78 30.03 4.40
2419 2545 6.230472 TGTACAACACTGCTTCATGAATAGT 58.770 36.000 8.96 13.26 0.00 2.12
2583 2711 1.350684 TGCTGTTGGTATCCTTGCAGA 59.649 47.619 0.00 0.00 0.00 4.26
2593 2721 5.013079 TGGTATCCTTGCAGAGAGAGAAAAA 59.987 40.000 0.00 0.00 0.00 1.94
2715 2843 1.956477 CTGAAACCACTGTTCCAAGGG 59.044 52.381 0.00 0.00 32.15 3.95
2861 2989 6.672266 TCATGTCTCAAGTAACTTTCCTCT 57.328 37.500 0.00 0.00 0.00 3.69
2975 3103 5.179182 CCTTGTTTTTGCTTGTCTTGTTTGT 59.821 36.000 0.00 0.00 0.00 2.83
3006 3134 7.871463 TCATGCTCATCAGAAATATACTCACAG 59.129 37.037 0.00 0.00 0.00 3.66
3023 3151 6.231211 ACTCACAGTAATAACCCAACTCTTG 58.769 40.000 0.00 0.00 0.00 3.02
3314 3442 4.689612 TGCTCTCTAGTTTGTTGGAGTT 57.310 40.909 0.00 0.00 0.00 3.01
3493 3621 4.466370 CACCTATTCTTTTTCCCCCTTTCC 59.534 45.833 0.00 0.00 0.00 3.13
3590 3725 5.010922 AGCTACCTGAATCTAGATGAGCAAG 59.989 44.000 5.86 6.71 0.00 4.01
3594 3729 4.691685 CCTGAATCTAGATGAGCAAGCATC 59.308 45.833 5.86 6.22 43.88 3.91
3610 3745 2.304751 CATCAAAAAGATGCTGCCCC 57.695 50.000 0.00 0.00 46.90 5.80
3715 3850 4.638865 GGAATATGCTACGGTTTCCTTTGT 59.361 41.667 0.81 0.00 34.36 2.83
3716 3851 5.448632 GGAATATGCTACGGTTTCCTTTGTG 60.449 44.000 0.81 0.00 34.36 3.33
3717 3852 0.948678 TGCTACGGTTTCCTTTGTGC 59.051 50.000 0.00 0.00 0.00 4.57
3718 3853 1.235724 GCTACGGTTTCCTTTGTGCT 58.764 50.000 0.00 0.00 0.00 4.40
3719 3854 2.224329 TGCTACGGTTTCCTTTGTGCTA 60.224 45.455 0.00 0.00 0.00 3.49
3720 3855 2.159037 GCTACGGTTTCCTTTGTGCTAC 59.841 50.000 0.00 0.00 0.00 3.58
3721 3856 2.632987 ACGGTTTCCTTTGTGCTACT 57.367 45.000 0.00 0.00 0.00 2.57
3722 3857 3.756933 ACGGTTTCCTTTGTGCTACTA 57.243 42.857 0.00 0.00 0.00 1.82
3723 3858 3.660865 ACGGTTTCCTTTGTGCTACTAG 58.339 45.455 0.00 0.00 0.00 2.57
3724 3859 3.070590 ACGGTTTCCTTTGTGCTACTAGT 59.929 43.478 0.00 0.00 0.00 2.57
3725 3860 4.281688 ACGGTTTCCTTTGTGCTACTAGTA 59.718 41.667 1.89 1.89 0.00 1.82
3726 3861 4.863131 CGGTTTCCTTTGTGCTACTAGTAG 59.137 45.833 23.25 23.25 36.29 2.57
3727 3862 5.176592 GGTTTCCTTTGTGCTACTAGTAGG 58.823 45.833 27.24 14.40 33.87 3.18
3728 3863 5.176592 GTTTCCTTTGTGCTACTAGTAGGG 58.823 45.833 27.24 19.25 33.87 3.53
3729 3864 4.326600 TCCTTTGTGCTACTAGTAGGGA 57.673 45.455 27.24 20.90 33.87 4.20
3730 3865 4.279145 TCCTTTGTGCTACTAGTAGGGAG 58.721 47.826 27.24 8.85 33.87 4.30
3731 3866 4.017775 TCCTTTGTGCTACTAGTAGGGAGA 60.018 45.833 27.24 8.81 33.87 3.71
3732 3867 4.098196 CCTTTGTGCTACTAGTAGGGAGAC 59.902 50.000 27.24 13.24 33.87 3.36
3733 3868 4.587976 TTGTGCTACTAGTAGGGAGACT 57.412 45.455 27.24 0.00 33.87 3.24
3734 3869 4.153673 TGTGCTACTAGTAGGGAGACTC 57.846 50.000 27.24 13.49 33.87 3.36
3735 3870 3.781407 TGTGCTACTAGTAGGGAGACTCT 59.219 47.826 27.24 0.00 33.87 3.24
3736 3871 4.967442 TGTGCTACTAGTAGGGAGACTCTA 59.033 45.833 27.24 4.22 33.87 2.43
3737 3872 5.070714 TGTGCTACTAGTAGGGAGACTCTAG 59.929 48.000 27.24 4.49 35.18 2.43
3738 3873 4.040706 TGCTACTAGTAGGGAGACTCTAGC 59.959 50.000 27.24 13.98 36.86 3.42
3739 3874 4.564199 GCTACTAGTAGGGAGACTCTAGCC 60.564 54.167 27.24 5.93 33.54 3.93
3740 3875 2.369532 ACTAGTAGGGAGACTCTAGCCG 59.630 54.545 1.74 0.00 33.72 5.52
3741 3876 0.179012 AGTAGGGAGACTCTAGCCGC 60.179 60.000 1.74 0.00 0.00 6.53
3742 3877 0.465824 GTAGGGAGACTCTAGCCGCA 60.466 60.000 1.74 0.00 0.00 5.69
3743 3878 0.257905 TAGGGAGACTCTAGCCGCAA 59.742 55.000 1.74 0.00 0.00 4.85
3744 3879 0.614979 AGGGAGACTCTAGCCGCAAA 60.615 55.000 1.74 0.00 0.00 3.68
3745 3880 0.249398 GGGAGACTCTAGCCGCAAAA 59.751 55.000 1.74 0.00 0.00 2.44
3746 3881 1.338769 GGGAGACTCTAGCCGCAAAAA 60.339 52.381 1.74 0.00 0.00 1.94
3747 3882 2.003301 GGAGACTCTAGCCGCAAAAAG 58.997 52.381 1.74 0.00 0.00 2.27
3748 3883 2.353803 GGAGACTCTAGCCGCAAAAAGA 60.354 50.000 1.74 0.00 0.00 2.52
3749 3884 3.526534 GAGACTCTAGCCGCAAAAAGAT 58.473 45.455 0.00 0.00 0.00 2.40
3750 3885 3.265791 AGACTCTAGCCGCAAAAAGATG 58.734 45.455 0.00 0.00 0.00 2.90
3751 3886 1.740025 ACTCTAGCCGCAAAAAGATGC 59.260 47.619 0.00 0.00 42.94 3.91
3752 3887 2.012673 CTCTAGCCGCAAAAAGATGCT 58.987 47.619 0.00 0.00 44.21 3.79
3753 3888 1.739466 TCTAGCCGCAAAAAGATGCTG 59.261 47.619 0.00 0.00 44.21 4.41
3754 3889 3.466879 GCCGCAAAAAGATGCTGC 58.533 55.556 0.16 0.16 46.55 5.25
3755 3890 2.096442 GCCGCAAAAAGATGCTGCC 61.096 57.895 4.61 0.00 46.74 4.85
3756 3891 1.446618 CCGCAAAAAGATGCTGCCC 60.447 57.895 0.00 0.00 44.21 5.36
3757 3892 1.446618 CGCAAAAAGATGCTGCCCC 60.447 57.895 0.00 0.00 44.21 5.80
3758 3893 1.446618 GCAAAAAGATGCTGCCCCG 60.447 57.895 0.00 0.00 43.06 5.73
3759 3894 1.446618 CAAAAAGATGCTGCCCCGC 60.447 57.895 0.00 0.00 0.00 6.13
3760 3895 1.907807 AAAAAGATGCTGCCCCGCA 60.908 52.632 0.00 0.00 45.10 5.69
3761 3896 1.470996 AAAAAGATGCTGCCCCGCAA 61.471 50.000 0.00 0.00 44.06 4.85
3762 3897 1.259840 AAAAGATGCTGCCCCGCAAT 61.260 50.000 0.00 0.00 44.06 3.56
3763 3898 0.395586 AAAGATGCTGCCCCGCAATA 60.396 50.000 0.00 0.00 44.06 1.90
3764 3899 0.820891 AAGATGCTGCCCCGCAATAG 60.821 55.000 0.00 0.00 44.06 1.73
3765 3900 2.908940 ATGCTGCCCCGCAATAGC 60.909 61.111 0.00 0.00 44.06 2.97
3766 3901 3.426309 ATGCTGCCCCGCAATAGCT 62.426 57.895 0.00 0.00 44.06 3.32
3767 3902 2.055689 ATGCTGCCCCGCAATAGCTA 62.056 55.000 0.00 0.00 44.06 3.32
3768 3903 1.302832 GCTGCCCCGCAATAGCTAT 60.303 57.895 0.00 0.00 38.41 2.97
3769 3904 1.301677 GCTGCCCCGCAATAGCTATC 61.302 60.000 6.72 0.00 38.41 2.08
3770 3905 0.322975 CTGCCCCGCAATAGCTATCT 59.677 55.000 6.72 0.00 38.41 1.98
3771 3906 0.035317 TGCCCCGCAATAGCTATCTG 59.965 55.000 6.72 8.81 39.10 2.90
3772 3907 0.674895 GCCCCGCAATAGCTATCTGG 60.675 60.000 6.72 9.04 39.10 3.86
3773 3908 0.687354 CCCCGCAATAGCTATCTGGT 59.313 55.000 6.72 0.00 39.10 4.00
3774 3909 1.609061 CCCCGCAATAGCTATCTGGTG 60.609 57.143 6.72 2.65 39.10 4.17
3775 3910 1.151668 CCGCAATAGCTATCTGGTGC 58.848 55.000 15.28 15.28 39.10 5.01
3776 3911 1.541015 CCGCAATAGCTATCTGGTGCA 60.541 52.381 21.91 0.00 39.10 4.57
3777 3912 2.420642 CGCAATAGCTATCTGGTGCAT 58.579 47.619 21.91 0.00 39.10 3.96
3778 3913 3.588955 CGCAATAGCTATCTGGTGCATA 58.411 45.455 21.91 0.00 39.10 3.14
3779 3914 4.186926 CGCAATAGCTATCTGGTGCATAT 58.813 43.478 21.91 0.00 39.10 1.78
3780 3915 4.633126 CGCAATAGCTATCTGGTGCATATT 59.367 41.667 21.91 0.00 39.10 1.28
3781 3916 5.122869 CGCAATAGCTATCTGGTGCATATTT 59.877 40.000 21.91 0.00 39.10 1.40
3782 3917 6.348786 CGCAATAGCTATCTGGTGCATATTTT 60.349 38.462 21.91 0.00 39.10 1.82
3783 3918 7.148423 CGCAATAGCTATCTGGTGCATATTTTA 60.148 37.037 21.91 0.00 39.10 1.52
3784 3919 8.514594 GCAATAGCTATCTGGTGCATATTTTAA 58.485 33.333 18.86 0.00 37.91 1.52
3785 3920 9.831737 CAATAGCTATCTGGTGCATATTTTAAC 57.168 33.333 6.72 0.00 0.00 2.01
3786 3921 9.799106 AATAGCTATCTGGTGCATATTTTAACT 57.201 29.630 6.72 0.00 0.00 2.24
3788 3923 8.608844 AGCTATCTGGTGCATATTTTAACTAC 57.391 34.615 0.00 0.00 0.00 2.73
3789 3924 7.661847 AGCTATCTGGTGCATATTTTAACTACC 59.338 37.037 0.00 0.00 0.00 3.18
3790 3925 7.661847 GCTATCTGGTGCATATTTTAACTACCT 59.338 37.037 0.00 0.00 0.00 3.08
3791 3926 7.807977 ATCTGGTGCATATTTTAACTACCTG 57.192 36.000 0.00 0.00 0.00 4.00
3792 3927 6.717289 TCTGGTGCATATTTTAACTACCTGT 58.283 36.000 0.00 0.00 0.00 4.00
3793 3928 6.821665 TCTGGTGCATATTTTAACTACCTGTC 59.178 38.462 0.00 0.00 0.00 3.51
3794 3929 6.477253 TGGTGCATATTTTAACTACCTGTCA 58.523 36.000 0.00 0.00 0.00 3.58
3795 3930 6.597672 TGGTGCATATTTTAACTACCTGTCAG 59.402 38.462 0.00 0.00 0.00 3.51
3796 3931 6.821665 GGTGCATATTTTAACTACCTGTCAGA 59.178 38.462 0.00 0.00 0.00 3.27
3797 3932 7.201617 GGTGCATATTTTAACTACCTGTCAGAC 60.202 40.741 0.00 0.00 0.00 3.51
3798 3933 6.821665 TGCATATTTTAACTACCTGTCAGACC 59.178 38.462 0.00 0.00 0.00 3.85
3799 3934 6.821665 GCATATTTTAACTACCTGTCAGACCA 59.178 38.462 0.00 0.00 0.00 4.02
3800 3935 7.499232 GCATATTTTAACTACCTGTCAGACCAT 59.501 37.037 0.00 0.00 0.00 3.55
3801 3936 9.396022 CATATTTTAACTACCTGTCAGACCATT 57.604 33.333 0.00 0.00 0.00 3.16
3804 3939 8.786826 TTTTAACTACCTGTCAGACCATTATG 57.213 34.615 0.00 0.00 0.00 1.90
3805 3940 4.408182 ACTACCTGTCAGACCATTATGC 57.592 45.455 0.00 0.00 0.00 3.14
3806 3941 3.774766 ACTACCTGTCAGACCATTATGCA 59.225 43.478 0.00 0.00 0.00 3.96
3807 3942 3.939740 ACCTGTCAGACCATTATGCAT 57.060 42.857 3.79 3.79 0.00 3.96
3808 3943 3.813443 ACCTGTCAGACCATTATGCATC 58.187 45.455 0.19 0.00 0.00 3.91
3809 3944 3.144506 CCTGTCAGACCATTATGCATCC 58.855 50.000 0.19 0.00 0.00 3.51
3810 3945 3.181447 CCTGTCAGACCATTATGCATCCT 60.181 47.826 0.19 0.00 0.00 3.24
3811 3946 4.458397 CTGTCAGACCATTATGCATCCTT 58.542 43.478 0.19 0.00 0.00 3.36
3812 3947 5.455183 CCTGTCAGACCATTATGCATCCTTA 60.455 44.000 0.19 0.00 0.00 2.69
3813 3948 6.191657 TGTCAGACCATTATGCATCCTTAT 57.808 37.500 0.19 0.00 0.00 1.73
3814 3949 6.604171 TGTCAGACCATTATGCATCCTTATT 58.396 36.000 0.19 0.00 0.00 1.40
3815 3950 6.487668 TGTCAGACCATTATGCATCCTTATTG 59.512 38.462 0.19 0.00 0.00 1.90
3816 3951 6.005823 TCAGACCATTATGCATCCTTATTGG 58.994 40.000 0.19 4.51 32.56 3.16
3817 3952 5.771666 CAGACCATTATGCATCCTTATTGGT 59.228 40.000 0.19 7.97 37.71 3.67
3818 3953 5.771666 AGACCATTATGCATCCTTATTGGTG 59.228 40.000 15.23 0.05 36.38 4.17
3819 3954 4.281688 ACCATTATGCATCCTTATTGGTGC 59.718 41.667 0.19 0.00 40.67 5.01
3820 3955 4.525487 CCATTATGCATCCTTATTGGTGCT 59.475 41.667 0.19 0.00 40.79 4.40
3821 3956 5.711506 CCATTATGCATCCTTATTGGTGCTA 59.288 40.000 0.19 0.00 40.79 3.49
3822 3957 6.349611 CCATTATGCATCCTTATTGGTGCTAC 60.350 42.308 0.19 0.00 40.79 3.58
3823 3958 2.930950 TGCATCCTTATTGGTGCTACC 58.069 47.619 0.00 0.00 40.79 3.18
3839 3974 6.963796 GGTGCTACCAAATATGAGATCTTTG 58.036 40.000 0.00 0.00 38.42 2.77
3851 3986 8.939201 ATATGAGATCTTTGGAATATGCTACG 57.061 34.615 0.00 0.00 0.00 3.51
3852 3987 5.541845 TGAGATCTTTGGAATATGCTACGG 58.458 41.667 0.00 0.00 0.00 4.02
3853 3988 5.070446 TGAGATCTTTGGAATATGCTACGGT 59.930 40.000 0.00 0.00 0.00 4.83
3854 3989 5.930135 AGATCTTTGGAATATGCTACGGTT 58.070 37.500 0.00 0.00 0.00 4.44
3855 3990 6.357367 AGATCTTTGGAATATGCTACGGTTT 58.643 36.000 0.00 0.00 0.00 3.27
3856 3991 6.483640 AGATCTTTGGAATATGCTACGGTTTC 59.516 38.462 0.00 0.00 0.00 2.78
3857 3992 4.879545 TCTTTGGAATATGCTACGGTTTCC 59.120 41.667 1.02 1.02 37.06 3.13
3858 3993 4.497291 TTGGAATATGCTACGGTTTCCT 57.503 40.909 8.13 0.00 37.36 3.36
3859 3994 4.497291 TGGAATATGCTACGGTTTCCTT 57.503 40.909 8.13 0.00 37.36 3.36
3860 3995 4.850680 TGGAATATGCTACGGTTTCCTTT 58.149 39.130 8.13 0.00 37.36 3.11
3861 3996 4.638421 TGGAATATGCTACGGTTTCCTTTG 59.362 41.667 8.13 0.00 37.36 2.77
3862 3997 4.638865 GGAATATGCTACGGTTTCCTTTGT 59.361 41.667 0.81 0.00 34.36 2.83
3863 3998 5.448632 GGAATATGCTACGGTTTCCTTTGTG 60.449 44.000 0.81 0.00 34.36 3.33
3864 3999 0.948678 TGCTACGGTTTCCTTTGTGC 59.051 50.000 0.00 0.00 0.00 4.57
3870 4005 3.660865 ACGGTTTCCTTTGTGCTACTAG 58.339 45.455 0.00 0.00 0.00 2.57
3875 4010 5.176592 GTTTCCTTTGTGCTACTAGTAGGG 58.823 45.833 27.24 19.25 33.87 3.53
3892 4027 1.152839 GGAGACTCTAGCCGCTCCT 60.153 63.158 13.93 0.00 42.81 3.69
3898 4033 1.683917 ACTCTAGCCGCTCCTGTTATG 59.316 52.381 0.00 0.00 0.00 1.90
3912 4047 3.689649 CCTGTTATGCCACTGTCTAAACC 59.310 47.826 0.00 0.00 0.00 3.27
3944 4079 6.013379 TCTACTCTATTAGGGCATCTCCAAG 58.987 44.000 0.00 0.00 36.21 3.61
3977 4112 0.809385 ACAGACACACTATCCGTCCG 59.191 55.000 0.00 0.00 0.00 4.79
4063 4198 2.994186 TGTCCGCCCCTATTAACTTC 57.006 50.000 0.00 0.00 0.00 3.01
4064 4199 2.474112 TGTCCGCCCCTATTAACTTCT 58.526 47.619 0.00 0.00 0.00 2.85
4074 4209 7.227910 CGCCCCTATTAACTTCTAAAAATAGCA 59.772 37.037 0.00 0.00 32.82 3.49
4085 4220 8.739972 ACTTCTAAAAATAGCATTCCGTCAAAT 58.260 29.630 0.00 0.00 0.00 2.32
4302 4463 3.007635 ACAGGTTAATTAGTGCTTCCGC 58.992 45.455 0.00 0.00 0.00 5.54
4330 4491 0.955428 CTAGCAGCTTCCGCCAAACA 60.955 55.000 0.00 0.00 36.60 2.83
4331 4492 0.322456 TAGCAGCTTCCGCCAAACAT 60.322 50.000 0.00 0.00 36.60 2.71
4436 4597 1.529244 GGCCAGATGGATTTCCGGG 60.529 63.158 0.00 0.00 39.43 5.73
4441 4602 0.695803 AGATGGATTTCCGGGCTCCT 60.696 55.000 15.81 5.08 39.43 3.69
4555 4742 0.178068 CGGATGATTTGAGGGTCCGT 59.822 55.000 4.09 0.00 44.94 4.69
4588 4775 3.944015 CCCTTAGAAGCAGTCTGGAATTG 59.056 47.826 1.14 0.00 37.12 2.32
4678 4867 1.549950 GGGGTTGCCTTCTGATTTCCA 60.550 52.381 0.00 0.00 0.00 3.53
5308 5532 4.164843 AGTTGTAATGCGGGGATATTGT 57.835 40.909 0.00 0.00 0.00 2.71
5472 5696 5.955355 AGAGTCTCAACTGCCTCTACTTTAT 59.045 40.000 1.94 0.00 35.28 1.40
5558 5782 1.135575 CAGCCAGGCGAGAAAATTGTC 60.136 52.381 5.55 0.00 0.00 3.18
5676 5905 7.981225 TGCCTAAATCTTAATTTTCCAATCTGC 59.019 33.333 0.00 0.00 36.49 4.26
5727 5956 6.892456 TGATAGAGAAGAGCTTAGTGGAAAGA 59.108 38.462 0.00 0.00 0.00 2.52
5898 7017 9.020813 GTCTTGTTTCTTGTTTAATTTCCTCAC 57.979 33.333 0.00 0.00 0.00 3.51
5953 7072 5.181245 CCAAAGAATTCTTAAGAACTGCCGA 59.819 40.000 20.76 0.00 36.80 5.54
6211 7336 5.772393 TCCACACCAGGTTTGTTCTATAT 57.228 39.130 4.99 0.00 0.00 0.86
6258 7384 6.425721 AGCTACTGTTGTTTGAATAACGCTTA 59.574 34.615 0.00 0.00 33.34 3.09
6290 7416 4.583073 AGTAAGCCGTTTGATTTTCTTGGT 59.417 37.500 0.00 0.00 0.00 3.67
6653 7792 5.046591 ACAAGCTGGTAGACATGCTAGTTTA 60.047 40.000 0.00 0.00 34.10 2.01
6663 7802 7.856145 AGACATGCTAGTTTAATTCTTCTGG 57.144 36.000 0.00 0.00 0.00 3.86
6684 7823 1.691976 TCATGTTGGAAGACGAGTGGT 59.308 47.619 0.00 0.00 0.00 4.16
6687 7826 2.285083 TGTTGGAAGACGAGTGGTTTG 58.715 47.619 0.00 0.00 0.00 2.93
6703 7842 3.194861 GGTTTGGGCAAAAAGTCACTTC 58.805 45.455 0.00 0.00 31.33 3.01
6740 7879 7.224297 TCCAGTGAGCCCTATATTTTGAATAC 58.776 38.462 0.00 0.00 0.00 1.89
6822 7963 5.486526 TGGATGCATTGTTTTGGGAATTAC 58.513 37.500 0.00 0.00 0.00 1.89
6823 7964 5.248020 TGGATGCATTGTTTTGGGAATTACT 59.752 36.000 0.00 0.00 0.00 2.24
6824 7965 5.812127 GGATGCATTGTTTTGGGAATTACTC 59.188 40.000 0.00 0.00 0.00 2.59
6825 7966 4.804108 TGCATTGTTTTGGGAATTACTCG 58.196 39.130 0.00 0.00 0.00 4.18
6841 8020 9.204570 GGAATTACTCGTATGTATGTAAAGCAT 57.795 33.333 0.00 0.00 41.42 3.79
6943 8125 3.545703 CCGCCCTTGTTATCTCTTCATT 58.454 45.455 0.00 0.00 0.00 2.57
6991 8173 4.288626 TCACTTACTAAGGGCAACTCCAAT 59.711 41.667 0.88 0.00 36.21 3.16
7000 8182 1.341383 GGCAACTCCAATGAGGGTCAT 60.341 52.381 0.00 0.00 43.29 3.06
7002 8184 2.283298 CAACTCCAATGAGGGTCATCG 58.717 52.381 0.00 0.00 43.29 3.84
7029 8211 2.463876 GCCTCACAAAAGTCTGCAAAC 58.536 47.619 0.00 0.00 0.00 2.93
7046 8228 3.678806 GCAAACATCTCCACGGACAGATA 60.679 47.826 0.00 0.00 0.00 1.98
7050 8232 4.730966 ACATCTCCACGGACAGATATAGT 58.269 43.478 0.00 0.00 0.00 2.12
7060 8242 6.706716 CACGGACAGATATAGTAGAAGAGTCA 59.293 42.308 0.00 0.00 0.00 3.41
7061 8243 6.707161 ACGGACAGATATAGTAGAAGAGTCAC 59.293 42.308 0.00 0.00 0.00 3.67
7071 8259 1.066286 AGAAGAGTCACTGCAGGCATC 60.066 52.381 19.93 10.27 0.00 3.91
7101 8289 6.569610 GCTTGTCCCATTTCAAACGAATCTTA 60.570 38.462 0.00 0.00 0.00 2.10
7102 8290 6.885952 TGTCCCATTTCAAACGAATCTTAA 57.114 33.333 0.00 0.00 0.00 1.85
7103 8291 7.278461 TGTCCCATTTCAAACGAATCTTAAA 57.722 32.000 0.00 0.00 0.00 1.52
7104 8292 7.717568 TGTCCCATTTCAAACGAATCTTAAAA 58.282 30.769 0.00 0.00 0.00 1.52
7105 8293 8.198109 TGTCCCATTTCAAACGAATCTTAAAAA 58.802 29.630 0.00 0.00 0.00 1.94
7137 8325 7.667219 ACAGATGAAATTCACACCAAACTAGAT 59.333 33.333 0.00 0.00 0.00 1.98
7190 8385 4.938756 AGGCCCACCCCTTGGTCA 62.939 66.667 0.00 0.00 45.57 4.02
7191 8386 4.678743 GGCCCACCCCTTGGTCAC 62.679 72.222 0.00 0.00 45.57 3.67
7199 8394 2.046892 CCTTGGTCACGAGCCAGG 60.047 66.667 2.35 2.35 37.31 4.45
7200 8395 2.046892 CTTGGTCACGAGCCAGGG 60.047 66.667 0.00 0.00 37.31 4.45
7201 8396 2.847234 TTGGTCACGAGCCAGGGT 60.847 61.111 0.00 0.00 37.31 4.34
7202 8397 2.397413 CTTGGTCACGAGCCAGGGTT 62.397 60.000 0.00 0.00 37.31 4.11
7203 8398 2.047179 GGTCACGAGCCAGGGTTC 60.047 66.667 0.00 0.00 0.00 3.62
7204 8399 2.741092 GTCACGAGCCAGGGTTCA 59.259 61.111 3.06 0.00 0.00 3.18
7205 8400 1.668151 GTCACGAGCCAGGGTTCAC 60.668 63.158 3.06 0.00 0.00 3.18
7206 8401 2.137528 TCACGAGCCAGGGTTCACA 61.138 57.895 3.06 0.00 0.00 3.58
7207 8402 1.003355 CACGAGCCAGGGTTCACAT 60.003 57.895 3.06 0.00 0.00 3.21
7208 8403 1.003355 ACGAGCCAGGGTTCACATG 60.003 57.895 3.06 0.00 0.00 3.21
7209 8404 1.746615 CGAGCCAGGGTTCACATGG 60.747 63.158 0.00 0.00 37.15 3.66
7210 8405 1.685224 GAGCCAGGGTTCACATGGA 59.315 57.895 1.80 0.00 36.09 3.41
7211 8406 0.257039 GAGCCAGGGTTCACATGGAT 59.743 55.000 1.80 0.00 36.09 3.41
7212 8407 0.706433 AGCCAGGGTTCACATGGATT 59.294 50.000 1.80 0.00 36.09 3.01
7213 8408 1.106285 GCCAGGGTTCACATGGATTC 58.894 55.000 1.80 0.00 36.09 2.52
7214 8409 1.767759 CCAGGGTTCACATGGATTCC 58.232 55.000 0.00 0.00 36.09 3.01
7215 8410 1.005805 CCAGGGTTCACATGGATTCCA 59.994 52.381 8.08 8.08 36.09 3.53
7216 8411 2.358510 CCAGGGTTCACATGGATTCCAT 60.359 50.000 12.62 12.62 46.37 3.41
7226 8421 2.520188 TGGATTCCATGAGATCCCCT 57.480 50.000 18.81 0.00 32.38 4.79
7227 8422 2.342659 TGGATTCCATGAGATCCCCTC 58.657 52.381 18.81 0.00 42.30 4.30
7228 8423 2.089753 TGGATTCCATGAGATCCCCTCT 60.090 50.000 18.81 0.00 42.44 3.69
7229 8424 2.985311 GGATTCCATGAGATCCCCTCTT 59.015 50.000 13.46 0.00 42.44 2.85
7230 8425 3.244840 GGATTCCATGAGATCCCCTCTTG 60.245 52.174 13.46 0.00 43.11 3.02
7231 8426 2.575921 TCCATGAGATCCCCTCTTGT 57.424 50.000 0.00 0.00 42.39 3.16
7232 8427 2.121948 TCCATGAGATCCCCTCTTGTG 58.878 52.381 0.00 0.00 42.39 3.33
7233 8428 1.142465 CCATGAGATCCCCTCTTGTGG 59.858 57.143 0.00 0.00 42.39 4.17
7234 8429 0.842635 ATGAGATCCCCTCTTGTGGC 59.157 55.000 0.00 0.00 42.44 5.01
7235 8430 0.252881 TGAGATCCCCTCTTGTGGCT 60.253 55.000 0.00 0.00 42.44 4.75
7236 8431 1.008327 TGAGATCCCCTCTTGTGGCTA 59.992 52.381 0.00 0.00 42.44 3.93
7237 8432 1.414550 GAGATCCCCTCTTGTGGCTAC 59.585 57.143 0.00 0.00 38.86 3.58
7238 8433 0.105039 GATCCCCTCTTGTGGCTACG 59.895 60.000 0.00 0.00 0.00 3.51
7239 8434 0.325296 ATCCCCTCTTGTGGCTACGA 60.325 55.000 0.00 0.00 0.00 3.43
7240 8435 0.325296 TCCCCTCTTGTGGCTACGAT 60.325 55.000 0.00 0.00 0.00 3.73
7241 8436 0.179073 CCCCTCTTGTGGCTACGATG 60.179 60.000 0.00 0.00 0.00 3.84
7242 8437 0.811616 CCCTCTTGTGGCTACGATGC 60.812 60.000 0.00 0.00 0.00 3.91
7243 8438 0.176680 CCTCTTGTGGCTACGATGCT 59.823 55.000 0.00 0.00 0.00 3.79
7244 8439 1.406069 CCTCTTGTGGCTACGATGCTT 60.406 52.381 0.00 0.00 0.00 3.91
7245 8440 2.350522 CTCTTGTGGCTACGATGCTTT 58.649 47.619 0.00 0.00 0.00 3.51
7246 8441 2.346803 TCTTGTGGCTACGATGCTTTC 58.653 47.619 0.00 0.00 0.00 2.62
7247 8442 2.028112 TCTTGTGGCTACGATGCTTTCT 60.028 45.455 0.00 0.00 0.00 2.52
7248 8443 1.725641 TGTGGCTACGATGCTTTCTG 58.274 50.000 0.00 0.00 0.00 3.02
7249 8444 1.275010 TGTGGCTACGATGCTTTCTGA 59.725 47.619 0.00 0.00 0.00 3.27
7250 8445 2.289382 TGTGGCTACGATGCTTTCTGAA 60.289 45.455 0.00 0.00 0.00 3.02
7251 8446 2.742053 GTGGCTACGATGCTTTCTGAAA 59.258 45.455 2.44 2.44 0.00 2.69
7252 8447 3.375299 GTGGCTACGATGCTTTCTGAAAT 59.625 43.478 2.88 0.00 0.00 2.17
7253 8448 4.009675 TGGCTACGATGCTTTCTGAAATT 58.990 39.130 2.88 0.00 0.00 1.82
7254 8449 4.458989 TGGCTACGATGCTTTCTGAAATTT 59.541 37.500 2.88 0.00 0.00 1.82
7255 8450 4.795278 GGCTACGATGCTTTCTGAAATTTG 59.205 41.667 2.88 0.00 0.00 2.32
7256 8451 4.263911 GCTACGATGCTTTCTGAAATTTGC 59.736 41.667 2.88 4.73 0.00 3.68
7257 8452 4.510038 ACGATGCTTTCTGAAATTTGCT 57.490 36.364 2.88 0.00 0.00 3.91
7258 8453 4.232221 ACGATGCTTTCTGAAATTTGCTG 58.768 39.130 2.88 2.17 0.00 4.41
7259 8454 4.022935 ACGATGCTTTCTGAAATTTGCTGA 60.023 37.500 2.88 0.00 0.00 4.26
7260 8455 4.919168 CGATGCTTTCTGAAATTTGCTGAA 59.081 37.500 2.88 1.18 0.00 3.02
7261 8456 5.575606 CGATGCTTTCTGAAATTTGCTGAAT 59.424 36.000 2.88 0.00 0.00 2.57
7262 8457 6.237490 CGATGCTTTCTGAAATTTGCTGAATC 60.237 38.462 2.88 0.30 0.00 2.52
7263 8458 6.092955 TGCTTTCTGAAATTTGCTGAATCT 57.907 33.333 2.88 0.00 0.00 2.40
7264 8459 5.924254 TGCTTTCTGAAATTTGCTGAATCTG 59.076 36.000 2.88 0.40 0.00 2.90
7265 8460 6.154445 GCTTTCTGAAATTTGCTGAATCTGA 58.846 36.000 2.88 0.00 0.00 3.27
7266 8461 6.643770 GCTTTCTGAAATTTGCTGAATCTGAA 59.356 34.615 2.88 0.00 0.00 3.02
7267 8462 7.170320 GCTTTCTGAAATTTGCTGAATCTGAAA 59.830 33.333 2.88 1.19 0.00 2.69
7268 8463 8.583810 TTTCTGAAATTTGCTGAATCTGAAAG 57.416 30.769 0.00 0.00 0.00 2.62
7269 8464 7.281040 TCTGAAATTTGCTGAATCTGAAAGT 57.719 32.000 0.00 0.00 33.76 2.66
7270 8465 8.394971 TCTGAAATTTGCTGAATCTGAAAGTA 57.605 30.769 0.00 0.00 33.76 2.24
7271 8466 8.849168 TCTGAAATTTGCTGAATCTGAAAGTAA 58.151 29.630 0.00 0.00 33.76 2.24
7272 8467 8.801715 TGAAATTTGCTGAATCTGAAAGTAAC 57.198 30.769 0.00 0.00 33.76 2.50
7273 8468 8.412456 TGAAATTTGCTGAATCTGAAAGTAACA 58.588 29.630 0.00 0.00 33.76 2.41
7274 8469 9.248291 GAAATTTGCTGAATCTGAAAGTAACAA 57.752 29.630 0.00 0.00 33.76 2.83
7275 8470 9.598517 AAATTTGCTGAATCTGAAAGTAACAAA 57.401 25.926 0.00 0.00 33.76 2.83
7276 8471 9.768662 AATTTGCTGAATCTGAAAGTAACAAAT 57.231 25.926 0.00 0.00 36.01 2.32
7277 8472 8.578308 TTTGCTGAATCTGAAAGTAACAAATG 57.422 30.769 0.00 0.00 33.76 2.32
7278 8473 7.275888 TGCTGAATCTGAAAGTAACAAATGT 57.724 32.000 0.00 0.00 33.76 2.71
7279 8474 7.715657 TGCTGAATCTGAAAGTAACAAATGTT 58.284 30.769 4.01 4.01 41.73 2.71
7280 8475 8.196771 TGCTGAATCTGAAAGTAACAAATGTTT 58.803 29.630 3.85 0.00 39.31 2.83
7281 8476 9.034544 GCTGAATCTGAAAGTAACAAATGTTTT 57.965 29.630 3.85 0.00 39.31 2.43
7363 8558 4.744795 AAACAACAACTAAATGTGGGCA 57.255 36.364 0.00 0.00 32.81 5.36
7364 8559 4.953940 AACAACAACTAAATGTGGGCAT 57.046 36.364 0.00 0.00 36.80 4.40
7365 8560 4.953940 ACAACAACTAAATGTGGGCATT 57.046 36.364 0.00 0.00 46.38 3.56
7366 8561 4.630111 ACAACAACTAAATGTGGGCATTG 58.370 39.130 0.00 0.00 43.89 2.82
7367 8562 4.343526 ACAACAACTAAATGTGGGCATTGA 59.656 37.500 0.00 0.00 43.89 2.57
7368 8563 5.163364 ACAACAACTAAATGTGGGCATTGAA 60.163 36.000 0.00 0.00 43.89 2.69
7369 8564 5.743636 ACAACTAAATGTGGGCATTGAAT 57.256 34.783 0.00 0.00 43.89 2.57
7370 8565 6.112927 ACAACTAAATGTGGGCATTGAATT 57.887 33.333 0.00 0.00 43.89 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 5.129485 TCCATCTAAGCTTGGGAAGAACTAG 59.871 44.000 9.86 0.00 33.62 2.57
42 43 5.217978 AGATTTGATGTTGTGCATGGTTT 57.782 34.783 0.00 0.00 38.06 3.27
50 51 4.516321 TGAGGTGTGAGATTTGATGTTGTG 59.484 41.667 0.00 0.00 0.00 3.33
63 64 3.297830 TGTACATTCGTGAGGTGTGAG 57.702 47.619 0.00 0.00 33.60 3.51
65 66 2.478894 GGTTGTACATTCGTGAGGTGTG 59.521 50.000 0.00 0.00 33.60 3.82
74 75 3.078097 TCATGGTTGGGTTGTACATTCG 58.922 45.455 0.00 0.00 0.00 3.34
78 79 1.074727 CCCTCATGGTTGGGTTGTACA 59.925 52.381 10.07 0.00 38.65 2.90
79 80 1.353022 TCCCTCATGGTTGGGTTGTAC 59.647 52.381 15.54 0.00 43.74 2.90
90 91 7.824289 ACATTATACGTTTGATATCCCTCATGG 59.176 37.037 0.00 0.00 0.00 3.66
91 92 8.777865 ACATTATACGTTTGATATCCCTCATG 57.222 34.615 0.00 0.00 0.00 3.07
110 111 8.105829 CCTGAGAGCAAAATAGGGATACATTAT 58.894 37.037 0.00 0.00 39.74 1.28
146 147 5.123979 GGCAAATTCCTAGTTTCCAGTAGTG 59.876 44.000 0.00 0.00 0.00 2.74
147 148 5.222048 TGGCAAATTCCTAGTTTCCAGTAGT 60.222 40.000 0.00 0.00 0.00 2.73
149 150 5.249780 TGGCAAATTCCTAGTTTCCAGTA 57.750 39.130 0.00 0.00 0.00 2.74
150 151 4.112634 TGGCAAATTCCTAGTTTCCAGT 57.887 40.909 0.00 0.00 0.00 4.00
151 152 4.706476 TGATGGCAAATTCCTAGTTTCCAG 59.294 41.667 0.00 0.00 0.00 3.86
152 153 4.671831 TGATGGCAAATTCCTAGTTTCCA 58.328 39.130 0.00 0.00 0.00 3.53
153 154 4.440663 GCTGATGGCAAATTCCTAGTTTCC 60.441 45.833 0.00 0.00 41.35 3.13
154 155 4.440663 GGCTGATGGCAAATTCCTAGTTTC 60.441 45.833 0.00 0.00 44.01 2.78
155 156 3.448660 GGCTGATGGCAAATTCCTAGTTT 59.551 43.478 0.00 0.00 44.01 2.66
156 157 3.026694 GGCTGATGGCAAATTCCTAGTT 58.973 45.455 0.00 0.00 44.01 2.24
157 158 2.025037 TGGCTGATGGCAAATTCCTAGT 60.025 45.455 0.00 0.00 46.03 2.57
158 159 2.658285 TGGCTGATGGCAAATTCCTAG 58.342 47.619 0.00 0.00 46.03 3.02
159 160 2.824689 TGGCTGATGGCAAATTCCTA 57.175 45.000 0.00 0.00 46.03 2.94
160 161 3.695803 TGGCTGATGGCAAATTCCT 57.304 47.368 0.00 0.00 46.03 3.36
167 168 0.963856 CAAAGAGCTGGCTGATGGCA 60.964 55.000 0.00 0.00 46.87 4.92
168 169 1.807886 CAAAGAGCTGGCTGATGGC 59.192 57.895 0.00 0.00 40.90 4.40
169 170 1.664321 GGCAAAGAGCTGGCTGATGG 61.664 60.000 0.00 0.00 44.79 3.51
170 171 0.963856 TGGCAAAGAGCTGGCTGATG 60.964 55.000 0.00 0.00 44.79 3.07
171 172 0.033405 ATGGCAAAGAGCTGGCTGAT 60.033 50.000 0.00 0.00 44.79 2.90
172 173 0.679002 GATGGCAAAGAGCTGGCTGA 60.679 55.000 0.00 0.00 44.79 4.26
173 174 0.680280 AGATGGCAAAGAGCTGGCTG 60.680 55.000 0.00 0.00 44.79 4.85
174 175 0.680280 CAGATGGCAAAGAGCTGGCT 60.680 55.000 0.00 0.00 44.79 4.75
175 176 1.807886 CAGATGGCAAAGAGCTGGC 59.192 57.895 0.00 0.00 44.79 4.85
176 177 1.807886 GCAGATGGCAAAGAGCTGG 59.192 57.895 0.00 0.00 44.79 4.85
186 187 3.433319 CATCAGCTGGCAGATGGC 58.567 61.111 30.21 10.71 36.65 4.40
195 196 0.877071 ACGTTCTTTGCCATCAGCTG 59.123 50.000 7.63 7.63 44.23 4.24
196 197 1.160137 GACGTTCTTTGCCATCAGCT 58.840 50.000 0.00 0.00 44.23 4.24
197 198 1.160137 AGACGTTCTTTGCCATCAGC 58.840 50.000 0.00 0.00 44.14 4.26
198 199 3.904136 AAAGACGTTCTTTGCCATCAG 57.096 42.857 10.79 0.00 44.34 2.90
206 207 4.130118 AGCAGATGACAAAGACGTTCTTT 58.870 39.130 7.04 7.04 46.75 2.52
207 208 3.733337 AGCAGATGACAAAGACGTTCTT 58.267 40.909 0.00 0.00 38.59 2.52
208 209 3.393089 AGCAGATGACAAAGACGTTCT 57.607 42.857 0.00 0.00 0.00 3.01
209 210 4.434857 GCTAAGCAGATGACAAAGACGTTC 60.435 45.833 0.00 0.00 0.00 3.95
210 211 3.433615 GCTAAGCAGATGACAAAGACGTT 59.566 43.478 0.00 0.00 0.00 3.99
211 212 2.996621 GCTAAGCAGATGACAAAGACGT 59.003 45.455 0.00 0.00 0.00 4.34
212 213 3.257393 AGCTAAGCAGATGACAAAGACG 58.743 45.455 0.00 0.00 0.00 4.18
213 214 5.180117 TGAAAGCTAAGCAGATGACAAAGAC 59.820 40.000 0.00 0.00 0.00 3.01
214 215 5.308014 TGAAAGCTAAGCAGATGACAAAGA 58.692 37.500 0.00 0.00 0.00 2.52
215 216 5.618056 TGAAAGCTAAGCAGATGACAAAG 57.382 39.130 0.00 0.00 0.00 2.77
216 217 6.579666 AATGAAAGCTAAGCAGATGACAAA 57.420 33.333 0.00 0.00 0.00 2.83
217 218 6.579666 AAATGAAAGCTAAGCAGATGACAA 57.420 33.333 0.00 0.00 0.00 3.18
218 219 6.207221 TCAAAATGAAAGCTAAGCAGATGACA 59.793 34.615 0.00 0.00 0.00 3.58
219 220 6.615088 TCAAAATGAAAGCTAAGCAGATGAC 58.385 36.000 0.00 0.00 0.00 3.06
220 221 6.822667 TCAAAATGAAAGCTAAGCAGATGA 57.177 33.333 0.00 0.00 0.00 2.92
221 222 7.861372 CCTATCAAAATGAAAGCTAAGCAGATG 59.139 37.037 0.00 0.00 0.00 2.90
222 223 7.014038 CCCTATCAAAATGAAAGCTAAGCAGAT 59.986 37.037 0.00 0.00 0.00 2.90
223 224 6.319658 CCCTATCAAAATGAAAGCTAAGCAGA 59.680 38.462 0.00 0.00 0.00 4.26
231 232 5.047377 TCAACCACCCTATCAAAATGAAAGC 60.047 40.000 0.00 0.00 0.00 3.51
238 239 6.325028 TCACAAATTCAACCACCCTATCAAAA 59.675 34.615 0.00 0.00 0.00 2.44
244 245 4.447138 AGTCACAAATTCAACCACCCTA 57.553 40.909 0.00 0.00 0.00 3.53
263 264 5.305585 AGTGGAACAATCATTTGACGTAGT 58.694 37.500 0.00 0.00 45.52 2.73
276 277 6.385649 ACACGTTAATTTGAGTGGAACAAT 57.614 33.333 10.26 0.00 44.16 2.71
278 279 6.050432 ACTACACGTTAATTTGAGTGGAACA 58.950 36.000 10.26 0.00 41.43 3.18
282 283 8.301730 TCTTAACTACACGTTAATTTGAGTGG 57.698 34.615 10.26 0.00 44.62 4.00
293 294 7.358830 GTGTACTCTTCTCTTAACTACACGTT 58.641 38.462 0.00 0.00 39.64 3.99
301 302 9.919348 CTAGATAACGTGTACTCTTCTCTTAAC 57.081 37.037 0.00 0.00 0.00 2.01
319 320 6.038492 ACTCGCACTACTCTTTCCTAGATAAC 59.962 42.308 0.00 0.00 30.92 1.89
324 325 3.690139 TCACTCGCACTACTCTTTCCTAG 59.310 47.826 0.00 0.00 0.00 3.02
328 329 2.243407 CGTCACTCGCACTACTCTTTC 58.757 52.381 0.00 0.00 0.00 2.62
340 341 1.411394 TTTTCCTAACGCGTCACTCG 58.589 50.000 14.44 0.00 43.12 4.18
347 348 3.601586 CGTGCATAGATTTTCCTAACGCG 60.602 47.826 3.53 3.53 31.49 6.01
352 353 6.112734 ACATCAACGTGCATAGATTTTCCTA 58.887 36.000 0.00 0.00 0.00 2.94
359 360 5.466728 GGATACAACATCAACGTGCATAGAT 59.533 40.000 0.00 0.00 0.00 1.98
377 378 6.935763 GGCATACGTCTTTTGCATGGATACA 61.936 44.000 12.71 0.00 41.62 2.29
391 392 0.907704 TCCCTTGGTGGCATACGTCT 60.908 55.000 0.00 0.00 0.00 4.18
392 393 0.743345 GTCCCTTGGTGGCATACGTC 60.743 60.000 0.00 0.00 0.00 4.34
399 400 1.877680 GCAAATTTGTCCCTTGGTGGC 60.878 52.381 19.03 0.00 0.00 5.01
402 403 0.678950 CGGCAAATTTGTCCCTTGGT 59.321 50.000 16.82 0.00 0.00 3.67
403 404 0.965439 TCGGCAAATTTGTCCCTTGG 59.035 50.000 16.82 2.93 0.00 3.61
404 405 1.669795 GCTCGGCAAATTTGTCCCTTG 60.670 52.381 16.82 3.29 0.00 3.61
410 411 1.173913 GGGTAGCTCGGCAAATTTGT 58.826 50.000 19.03 1.24 0.00 2.83
421 422 2.369203 GAGGAGGGTAATTGGGTAGCTC 59.631 54.545 0.00 0.00 0.00 4.09
432 433 1.996798 CTCGCTATGGAGGAGGGTAA 58.003 55.000 0.00 0.00 0.00 2.85
458 459 1.200020 GTTTTGTCTCGCATCCCAAGG 59.800 52.381 0.00 0.00 0.00 3.61
472 473 9.643693 CCTATCTTGAATTGCATAAAGTTTTGT 57.356 29.630 0.00 0.00 0.00 2.83
489 491 9.881773 ATTTGCCCTTTATTTATCCTATCTTGA 57.118 29.630 0.00 0.00 0.00 3.02
496 498 6.239204 GCGGTAATTTGCCCTTTATTTATCCT 60.239 38.462 0.00 0.00 0.00 3.24
497 499 5.924254 GCGGTAATTTGCCCTTTATTTATCC 59.076 40.000 0.00 0.00 0.00 2.59
504 506 0.452585 GCGCGGTAATTTGCCCTTTA 59.547 50.000 8.83 0.00 0.00 1.85
508 510 1.226575 GAAGCGCGGTAATTTGCCC 60.227 57.895 12.91 0.00 0.00 5.36
510 512 4.663636 ATATAGAAGCGCGGTAATTTGC 57.336 40.909 12.91 0.00 0.00 3.68
514 516 7.824672 AGTAGTTTATATAGAAGCGCGGTAAT 58.175 34.615 12.91 8.60 0.00 1.89
517 519 5.702349 AGTAGTTTATATAGAAGCGCGGT 57.298 39.130 4.23 4.23 0.00 5.68
518 520 5.572126 GGAAGTAGTTTATATAGAAGCGCGG 59.428 44.000 8.83 0.00 0.00 6.46
519 521 6.380190 AGGAAGTAGTTTATATAGAAGCGCG 58.620 40.000 0.00 0.00 0.00 6.86
521 523 7.022384 CGGAGGAAGTAGTTTATATAGAAGCG 58.978 42.308 0.00 0.00 0.00 4.68
522 524 7.884257 ACGGAGGAAGTAGTTTATATAGAAGC 58.116 38.462 0.00 0.00 0.00 3.86
535 537 3.641906 ACATTATGGGACGGAGGAAGTAG 59.358 47.826 0.00 0.00 0.00 2.57
540 542 3.918566 TCTTACATTATGGGACGGAGGA 58.081 45.455 0.00 0.00 0.00 3.71
541 543 4.891992 ATCTTACATTATGGGACGGAGG 57.108 45.455 0.00 0.00 0.00 4.30
544 546 5.247564 TCCCTAATCTTACATTATGGGACGG 59.752 44.000 0.00 0.00 37.56 4.79
546 548 7.317722 ACTCCCTAATCTTACATTATGGGAC 57.682 40.000 0.00 0.00 37.56 4.46
549 551 9.658799 CATGTACTCCCTAATCTTACATTATGG 57.341 37.037 0.00 0.00 32.30 2.74
553 555 9.396022 CAAACATGTACTCCCTAATCTTACATT 57.604 33.333 0.00 0.00 32.30 2.71
554 556 7.499232 GCAAACATGTACTCCCTAATCTTACAT 59.501 37.037 0.00 0.00 34.42 2.29
555 557 6.821665 GCAAACATGTACTCCCTAATCTTACA 59.178 38.462 0.00 0.00 0.00 2.41
556 558 6.821665 TGCAAACATGTACTCCCTAATCTTAC 59.178 38.462 0.00 0.00 0.00 2.34
558 560 5.815581 TGCAAACATGTACTCCCTAATCTT 58.184 37.500 0.00 0.00 0.00 2.40
559 561 5.435686 TGCAAACATGTACTCCCTAATCT 57.564 39.130 0.00 0.00 0.00 2.40
605 711 7.803189 GCAATATTTTTCGTTCTCAACTCTGAA 59.197 33.333 0.00 0.00 0.00 3.02
606 712 7.173218 AGCAATATTTTTCGTTCTCAACTCTGA 59.827 33.333 0.00 0.00 0.00 3.27
607 713 7.269937 CAGCAATATTTTTCGTTCTCAACTCTG 59.730 37.037 0.00 0.00 0.00 3.35
609 715 6.524586 CCAGCAATATTTTTCGTTCTCAACTC 59.475 38.462 0.00 0.00 0.00 3.01
682 788 6.857777 TTGGTTTGCGATTCATTCATTTTT 57.142 29.167 0.00 0.00 0.00 1.94
684 790 5.990996 ACTTTGGTTTGCGATTCATTCATTT 59.009 32.000 0.00 0.00 0.00 2.32
687 793 4.582701 ACTTTGGTTTGCGATTCATTCA 57.417 36.364 0.00 0.00 0.00 2.57
689 795 4.507388 CACAACTTTGGTTTGCGATTCATT 59.493 37.500 0.00 0.00 32.73 2.57
697 803 2.794631 CGAGTCCACAACTTTGGTTTGC 60.795 50.000 0.00 0.00 38.74 3.68
1182 1303 3.838271 GAGACGCCATCGCCCTCA 61.838 66.667 0.00 0.00 38.07 3.86
1307 1428 2.555547 GCAGTCAAAGGGCAAGCGT 61.556 57.895 0.00 0.00 0.00 5.07
1452 1573 2.352371 AGGCACATATAAGCAGGGGAT 58.648 47.619 1.59 0.00 0.00 3.85
1495 1616 8.286191 AGAGAGTTGGATTTGAATTTCATACC 57.714 34.615 0.00 5.25 0.00 2.73
1524 1645 7.913297 GCAGTGCTTCGTTAATTAATTATTCCA 59.087 33.333 8.18 0.00 0.00 3.53
1695 1816 1.207811 TGGAGAATCATGCTGCTCGAA 59.792 47.619 0.00 0.00 36.25 3.71
1880 2003 6.365970 AGAGACAATACTGGACAGATTTGT 57.634 37.500 17.70 17.70 41.18 2.83
1993 2116 4.959210 GGAGCTTGATATATCCTAGCCAGA 59.041 45.833 23.17 0.00 35.39 3.86
2161 2285 5.677319 TTGAGTCTATAAGAACAGTGGGG 57.323 43.478 0.00 0.00 0.00 4.96
2232 2356 9.903682 AGATACTGAACTCAAACATTCAAAATG 57.096 29.630 0.00 0.00 34.52 2.32
2263 2388 2.366916 TCCAATCAACGGCCAAAATTGT 59.633 40.909 2.24 0.00 0.00 2.71
2379 2505 9.781633 AGTGTTGTACAAAATAATACTACCACA 57.218 29.630 10.51 0.00 0.00 4.17
2419 2545 5.629133 GCAGAAATCTACCATACCACCTCAA 60.629 44.000 0.00 0.00 0.00 3.02
2861 2989 7.286313 TGTGAGATATACCAATGGCATAAACA 58.714 34.615 0.00 0.00 0.00 2.83
2975 3103 9.399797 AGTATATTTCTGATGAGCATGACAAAA 57.600 29.630 0.00 0.00 0.00 2.44
3006 3134 6.002082 ACCTTCACAAGAGTTGGGTTATTAC 58.998 40.000 0.00 0.00 35.01 1.89
3314 3442 6.862711 TGTTCATCAACCAACGTAATGTTA 57.137 33.333 0.00 0.00 39.29 2.41
3366 3494 7.444487 GGAATACTAGGATGATAAACCAACACC 59.556 40.741 0.00 0.00 0.00 4.16
3493 3621 1.238439 ACAGAAGCATCCAAACACGG 58.762 50.000 0.00 0.00 0.00 4.94
3594 3729 1.446618 GCGGGGCAGCATCTTTTTG 60.447 57.895 0.00 0.00 37.05 2.44
3610 3745 1.869774 TGCACCAGATAGCTATTGCG 58.130 50.000 18.57 8.02 45.42 4.85
3678 3813 9.376075 CGTAGCATATTCCAAAGATCTCATATT 57.624 33.333 0.00 0.00 0.00 1.28
3702 3837 2.632987 AGTAGCACAAAGGAAACCGT 57.367 45.000 0.00 0.00 0.00 4.83
3703 3838 3.660865 ACTAGTAGCACAAAGGAAACCG 58.339 45.455 0.00 0.00 0.00 4.44
3715 3850 4.040706 GCTAGAGTCTCCCTACTAGTAGCA 59.959 50.000 22.39 11.11 39.61 3.49
3716 3851 4.564199 GGCTAGAGTCTCCCTACTAGTAGC 60.564 54.167 22.39 10.34 39.36 3.58
3717 3852 4.322198 CGGCTAGAGTCTCCCTACTAGTAG 60.322 54.167 21.11 21.11 35.96 2.57
3718 3853 3.577848 CGGCTAGAGTCTCCCTACTAGTA 59.422 52.174 1.89 1.89 35.96 1.82
3719 3854 2.369532 CGGCTAGAGTCTCCCTACTAGT 59.630 54.545 0.00 0.00 35.96 2.57
3720 3855 2.872842 GCGGCTAGAGTCTCCCTACTAG 60.873 59.091 0.00 0.00 36.44 2.57
3721 3856 1.072015 GCGGCTAGAGTCTCCCTACTA 59.928 57.143 0.00 0.00 0.00 1.82
3722 3857 0.179012 GCGGCTAGAGTCTCCCTACT 60.179 60.000 0.00 0.00 0.00 2.57
3723 3858 0.465824 TGCGGCTAGAGTCTCCCTAC 60.466 60.000 0.00 0.00 0.00 3.18
3724 3859 0.257905 TTGCGGCTAGAGTCTCCCTA 59.742 55.000 0.00 0.00 0.00 3.53
3725 3860 0.614979 TTTGCGGCTAGAGTCTCCCT 60.615 55.000 0.00 0.00 0.00 4.20
3726 3861 0.249398 TTTTGCGGCTAGAGTCTCCC 59.751 55.000 0.00 0.00 0.00 4.30
3727 3862 2.003301 CTTTTTGCGGCTAGAGTCTCC 58.997 52.381 0.00 0.00 0.00 3.71
3728 3863 2.960819 TCTTTTTGCGGCTAGAGTCTC 58.039 47.619 0.00 0.00 0.00 3.36
3729 3864 3.265791 CATCTTTTTGCGGCTAGAGTCT 58.734 45.455 0.00 0.00 0.00 3.24
3730 3865 2.223135 GCATCTTTTTGCGGCTAGAGTC 60.223 50.000 0.00 0.00 32.06 3.36
3731 3866 1.740025 GCATCTTTTTGCGGCTAGAGT 59.260 47.619 0.00 0.00 32.06 3.24
3732 3867 2.465210 GCATCTTTTTGCGGCTAGAG 57.535 50.000 0.00 0.00 32.06 2.43
3740 3875 1.446618 CGGGGCAGCATCTTTTTGC 60.447 57.895 0.00 0.00 43.09 3.68
3741 3876 1.446618 GCGGGGCAGCATCTTTTTG 60.447 57.895 0.00 0.00 37.05 2.44
3742 3877 1.907807 TGCGGGGCAGCATCTTTTT 60.908 52.632 2.71 0.00 42.92 1.94
3743 3878 2.283101 TGCGGGGCAGCATCTTTT 60.283 55.556 2.71 0.00 42.92 2.27
3749 3884 2.055689 ATAGCTATTGCGGGGCAGCA 62.056 55.000 0.00 2.71 46.54 4.41
3750 3885 1.301677 GATAGCTATTGCGGGGCAGC 61.302 60.000 7.87 0.00 45.42 5.25
3751 3886 0.322975 AGATAGCTATTGCGGGGCAG 59.677 55.000 7.87 0.00 45.42 4.85
3752 3887 0.035317 CAGATAGCTATTGCGGGGCA 59.965 55.000 7.87 0.00 45.42 5.36
3753 3888 0.674895 CCAGATAGCTATTGCGGGGC 60.675 60.000 7.87 0.00 45.42 5.80
3754 3889 0.687354 ACCAGATAGCTATTGCGGGG 59.313 55.000 7.87 7.90 45.42 5.73
3755 3890 1.800805 CACCAGATAGCTATTGCGGG 58.199 55.000 7.87 8.70 45.42 6.13
3756 3891 1.151668 GCACCAGATAGCTATTGCGG 58.848 55.000 7.87 11.00 45.42 5.69
3757 3892 1.869774 TGCACCAGATAGCTATTGCG 58.130 50.000 18.57 8.02 45.42 4.85
3758 3893 6.506500 AAATATGCACCAGATAGCTATTGC 57.493 37.500 17.52 17.52 40.05 3.56
3759 3894 9.831737 GTTAAAATATGCACCAGATAGCTATTG 57.168 33.333 7.87 8.09 0.00 1.90
3760 3895 9.799106 AGTTAAAATATGCACCAGATAGCTATT 57.201 29.630 7.87 0.00 0.00 1.73
3762 3897 9.706691 GTAGTTAAAATATGCACCAGATAGCTA 57.293 33.333 0.00 0.00 0.00 3.32
3763 3898 7.661847 GGTAGTTAAAATATGCACCAGATAGCT 59.338 37.037 0.00 0.00 0.00 3.32
3764 3899 7.661847 AGGTAGTTAAAATATGCACCAGATAGC 59.338 37.037 0.00 0.00 0.00 2.97
3765 3900 8.993121 CAGGTAGTTAAAATATGCACCAGATAG 58.007 37.037 0.00 0.00 0.00 2.08
3766 3901 8.491134 ACAGGTAGTTAAAATATGCACCAGATA 58.509 33.333 0.00 0.00 0.00 1.98
3767 3902 7.346471 ACAGGTAGTTAAAATATGCACCAGAT 58.654 34.615 0.00 0.00 0.00 2.90
3768 3903 6.717289 ACAGGTAGTTAAAATATGCACCAGA 58.283 36.000 0.00 0.00 0.00 3.86
3769 3904 6.597672 TGACAGGTAGTTAAAATATGCACCAG 59.402 38.462 0.00 0.00 0.00 4.00
3770 3905 6.477253 TGACAGGTAGTTAAAATATGCACCA 58.523 36.000 0.00 0.00 0.00 4.17
3771 3906 6.821665 TCTGACAGGTAGTTAAAATATGCACC 59.178 38.462 1.81 0.00 0.00 5.01
3772 3907 7.201617 GGTCTGACAGGTAGTTAAAATATGCAC 60.202 40.741 10.38 0.00 0.00 4.57
3773 3908 6.821665 GGTCTGACAGGTAGTTAAAATATGCA 59.178 38.462 10.38 0.00 0.00 3.96
3774 3909 6.821665 TGGTCTGACAGGTAGTTAAAATATGC 59.178 38.462 10.38 0.00 0.00 3.14
3775 3910 8.964476 ATGGTCTGACAGGTAGTTAAAATATG 57.036 34.615 10.38 0.00 0.00 1.78
3778 3913 9.396022 CATAATGGTCTGACAGGTAGTTAAAAT 57.604 33.333 10.38 0.00 0.00 1.82
3779 3914 7.335924 GCATAATGGTCTGACAGGTAGTTAAAA 59.664 37.037 10.38 0.00 0.00 1.52
3780 3915 6.821665 GCATAATGGTCTGACAGGTAGTTAAA 59.178 38.462 10.38 0.00 0.00 1.52
3781 3916 6.070481 TGCATAATGGTCTGACAGGTAGTTAA 60.070 38.462 10.38 0.00 0.00 2.01
3782 3917 5.423931 TGCATAATGGTCTGACAGGTAGTTA 59.576 40.000 10.38 0.00 0.00 2.24
3783 3918 4.225042 TGCATAATGGTCTGACAGGTAGTT 59.775 41.667 10.38 0.00 0.00 2.24
3784 3919 3.774766 TGCATAATGGTCTGACAGGTAGT 59.225 43.478 10.38 0.00 0.00 2.73
3785 3920 4.406648 TGCATAATGGTCTGACAGGTAG 57.593 45.455 10.38 0.00 0.00 3.18
3786 3921 4.202357 GGATGCATAATGGTCTGACAGGTA 60.202 45.833 10.38 0.00 0.00 3.08
3787 3922 3.434167 GGATGCATAATGGTCTGACAGGT 60.434 47.826 10.38 0.00 0.00 4.00
3788 3923 3.144506 GGATGCATAATGGTCTGACAGG 58.855 50.000 10.38 0.00 0.00 4.00
3789 3924 4.082665 AGGATGCATAATGGTCTGACAG 57.917 45.455 10.38 0.00 0.00 3.51
3790 3925 4.508551 AAGGATGCATAATGGTCTGACA 57.491 40.909 10.38 0.00 0.00 3.58
3791 3926 6.072286 CCAATAAGGATGCATAATGGTCTGAC 60.072 42.308 0.00 0.00 41.22 3.51
3792 3927 6.005823 CCAATAAGGATGCATAATGGTCTGA 58.994 40.000 0.00 0.00 41.22 3.27
3793 3928 5.771666 ACCAATAAGGATGCATAATGGTCTG 59.228 40.000 0.00 0.00 41.22 3.51
3794 3929 5.771666 CACCAATAAGGATGCATAATGGTCT 59.228 40.000 6.27 0.00 41.22 3.85
3795 3930 5.565439 GCACCAATAAGGATGCATAATGGTC 60.565 44.000 6.27 0.03 41.22 4.02
3796 3931 4.281688 GCACCAATAAGGATGCATAATGGT 59.718 41.667 0.00 3.61 41.22 3.55
3797 3932 4.525487 AGCACCAATAAGGATGCATAATGG 59.475 41.667 0.00 2.37 40.63 3.16
3798 3933 5.717078 AGCACCAATAAGGATGCATAATG 57.283 39.130 0.00 0.00 40.63 1.90
3799 3934 5.711976 GGTAGCACCAATAAGGATGCATAAT 59.288 40.000 0.00 0.00 40.63 1.28
3800 3935 5.070001 GGTAGCACCAATAAGGATGCATAA 58.930 41.667 0.00 0.00 40.63 1.90
3801 3936 4.651778 GGTAGCACCAATAAGGATGCATA 58.348 43.478 0.00 0.00 40.63 3.14
3802 3937 3.490348 GGTAGCACCAATAAGGATGCAT 58.510 45.455 0.00 0.00 40.63 3.96
3803 3938 2.930950 GGTAGCACCAATAAGGATGCA 58.069 47.619 0.00 0.00 40.63 3.96
3815 3950 6.963796 CAAAGATCTCATATTTGGTAGCACC 58.036 40.000 0.00 0.00 37.70 5.01
3825 3960 9.376075 CGTAGCATATTCCAAAGATCTCATATT 57.624 33.333 0.00 0.00 0.00 1.28
3826 3961 7.984050 CCGTAGCATATTCCAAAGATCTCATAT 59.016 37.037 0.00 0.00 0.00 1.78
3827 3962 7.039011 ACCGTAGCATATTCCAAAGATCTCATA 60.039 37.037 0.00 0.00 0.00 2.15
3828 3963 6.169094 CCGTAGCATATTCCAAAGATCTCAT 58.831 40.000 0.00 0.00 0.00 2.90
3829 3964 5.070446 ACCGTAGCATATTCCAAAGATCTCA 59.930 40.000 0.00 0.00 0.00 3.27
3830 3965 5.542779 ACCGTAGCATATTCCAAAGATCTC 58.457 41.667 0.00 0.00 0.00 2.75
3831 3966 5.552870 ACCGTAGCATATTCCAAAGATCT 57.447 39.130 0.00 0.00 0.00 2.75
3832 3967 6.293462 GGAAACCGTAGCATATTCCAAAGATC 60.293 42.308 0.00 0.00 39.45 2.75
3833 3968 5.531287 GGAAACCGTAGCATATTCCAAAGAT 59.469 40.000 0.00 0.00 39.45 2.40
3834 3969 4.879545 GGAAACCGTAGCATATTCCAAAGA 59.120 41.667 0.00 0.00 39.45 2.52
3835 3970 4.881850 AGGAAACCGTAGCATATTCCAAAG 59.118 41.667 5.72 0.00 41.58 2.77
3836 3971 4.850680 AGGAAACCGTAGCATATTCCAAA 58.149 39.130 5.72 0.00 41.58 3.28
3837 3972 4.497291 AGGAAACCGTAGCATATTCCAA 57.503 40.909 5.72 0.00 41.58 3.53
3838 3973 4.497291 AAGGAAACCGTAGCATATTCCA 57.503 40.909 5.72 0.00 41.58 3.53
3839 3974 4.638865 ACAAAGGAAACCGTAGCATATTCC 59.361 41.667 0.00 0.00 39.85 3.01
3840 3975 5.569413 CACAAAGGAAACCGTAGCATATTC 58.431 41.667 0.00 0.00 0.00 1.75
3841 3976 4.142469 GCACAAAGGAAACCGTAGCATATT 60.142 41.667 0.00 0.00 0.00 1.28
3842 3977 3.377172 GCACAAAGGAAACCGTAGCATAT 59.623 43.478 0.00 0.00 0.00 1.78
3843 3978 2.745281 GCACAAAGGAAACCGTAGCATA 59.255 45.455 0.00 0.00 0.00 3.14
3844 3979 1.539827 GCACAAAGGAAACCGTAGCAT 59.460 47.619 0.00 0.00 0.00 3.79
3845 3980 0.948678 GCACAAAGGAAACCGTAGCA 59.051 50.000 0.00 0.00 0.00 3.49
3846 3981 1.235724 AGCACAAAGGAAACCGTAGC 58.764 50.000 0.00 0.00 0.00 3.58
3847 3982 3.660865 AGTAGCACAAAGGAAACCGTAG 58.339 45.455 0.00 0.00 0.00 3.51
3848 3983 3.756933 AGTAGCACAAAGGAAACCGTA 57.243 42.857 0.00 0.00 0.00 4.02
3849 3984 2.632987 AGTAGCACAAAGGAAACCGT 57.367 45.000 0.00 0.00 0.00 4.83
3850 3985 3.660865 ACTAGTAGCACAAAGGAAACCG 58.339 45.455 0.00 0.00 0.00 4.44
3851 3986 5.176592 CCTACTAGTAGCACAAAGGAAACC 58.823 45.833 22.39 0.00 31.95 3.27
3852 3987 5.046807 TCCCTACTAGTAGCACAAAGGAAAC 60.047 44.000 22.39 0.00 31.95 2.78
3853 3988 5.088730 TCCCTACTAGTAGCACAAAGGAAA 58.911 41.667 22.39 2.05 31.95 3.13
3854 3989 4.680407 TCCCTACTAGTAGCACAAAGGAA 58.320 43.478 22.39 6.55 31.95 3.36
3855 3990 4.017775 TCTCCCTACTAGTAGCACAAAGGA 60.018 45.833 22.39 19.48 31.95 3.36
3856 3991 4.098196 GTCTCCCTACTAGTAGCACAAAGG 59.902 50.000 22.39 16.74 31.95 3.11
3857 3992 4.951094 AGTCTCCCTACTAGTAGCACAAAG 59.049 45.833 22.39 13.97 31.95 2.77
3858 3993 4.931914 AGTCTCCCTACTAGTAGCACAAA 58.068 43.478 22.39 5.48 31.95 2.83
3859 3994 4.227754 AGAGTCTCCCTACTAGTAGCACAA 59.772 45.833 22.39 6.76 31.95 3.33
3860 3995 3.781407 AGAGTCTCCCTACTAGTAGCACA 59.219 47.826 22.39 8.54 31.95 4.57
3861 3996 4.426736 AGAGTCTCCCTACTAGTAGCAC 57.573 50.000 22.39 15.08 31.95 4.40
3862 3997 4.040706 GCTAGAGTCTCCCTACTAGTAGCA 59.959 50.000 22.39 11.11 39.61 3.49
3863 3998 4.564199 GGCTAGAGTCTCCCTACTAGTAGC 60.564 54.167 22.39 10.34 39.36 3.58
3864 3999 4.322198 CGGCTAGAGTCTCCCTACTAGTAG 60.322 54.167 21.11 21.11 35.96 2.57
3870 4005 0.179012 AGCGGCTAGAGTCTCCCTAC 60.179 60.000 0.00 0.00 0.00 3.18
3875 4010 0.750182 ACAGGAGCGGCTAGAGTCTC 60.750 60.000 0.60 0.00 0.00 3.36
3892 4027 3.331150 CGGTTTAGACAGTGGCATAACA 58.669 45.455 13.30 0.00 0.00 2.41
3898 4033 0.605589 AAGGCGGTTTAGACAGTGGC 60.606 55.000 0.00 0.00 0.00 5.01
3912 4047 4.156373 GCCCTAATAGAGTAGAGTAAGGCG 59.844 50.000 0.00 0.00 0.00 5.52
3944 4079 3.054655 TGTGTCTGTTTTAGGGGATAGCC 60.055 47.826 0.00 0.00 0.00 3.93
4024 4159 6.073222 CGGACATTTAAGGTATAGCATTGGAC 60.073 42.308 4.48 0.00 0.00 4.02
4074 4209 6.998074 TCTTAATATGAGGCATTTGACGGAAT 59.002 34.615 0.00 0.00 0.00 3.01
4085 4220 7.226441 AGCATGTGTTATCTTAATATGAGGCA 58.774 34.615 0.00 0.00 0.00 4.75
4302 4463 1.133790 GGAAGCTGCTAGCATGTTTGG 59.866 52.381 19.72 6.44 45.56 3.28
4330 4491 1.202879 TGTTTGGCGGAAGGTGAAGAT 60.203 47.619 0.00 0.00 0.00 2.40
4331 4492 0.181587 TGTTTGGCGGAAGGTGAAGA 59.818 50.000 0.00 0.00 0.00 2.87
4450 4611 1.766143 GCGTCCGGATGTCTGAATGC 61.766 60.000 24.33 4.73 0.00 3.56
4555 4742 4.101114 TGCTTCTAAGGGTATCTCCAACA 58.899 43.478 0.00 0.00 38.11 3.33
4588 4775 9.076596 GTTAAAACATAGCATGATTCCAAGAAC 57.923 33.333 0.00 0.00 0.00 3.01
4678 4867 9.457436 AACGAACTCCTAATGGTTTGTAATAAT 57.543 29.630 0.00 0.00 38.60 1.28
5123 5313 5.185442 TGCTTTATGCTTGTGATCCATTTCA 59.815 36.000 0.00 0.00 43.37 2.69
5181 5372 7.914427 ACATTAGGTACAGATCAATCCTACA 57.086 36.000 0.00 0.00 31.60 2.74
5472 5696 7.556275 ACAGAGACAAGAAAAACCATCACTTTA 59.444 33.333 0.00 0.00 0.00 1.85
5558 5782 3.526931 ACTGGACGAACAGGATATGTG 57.473 47.619 13.84 0.00 43.00 3.21
5676 5905 3.252974 AGCTTTCCACTAATCAGGTCG 57.747 47.619 0.00 0.00 0.00 4.79
5857 6103 4.292186 ACAAGACTTGTGATGCCTACAT 57.708 40.909 19.96 0.00 43.48 2.29
5873 6119 8.744652 TGTGAGGAAATTAAACAAGAAACAAGA 58.255 29.630 0.00 0.00 0.00 3.02
5898 7017 5.520376 AAGTGGGACTGAAACAAATCTTG 57.480 39.130 0.00 0.00 0.00 3.02
5953 7072 8.098912 TGCATCATGTTATTACAGATCATAGCT 58.901 33.333 0.00 0.00 37.77 3.32
6224 7350 3.299340 ACAACAGTAGCTAGGAACGTG 57.701 47.619 0.00 0.00 0.00 4.49
6258 7384 2.930040 CAAACGGCTTACTGATCGTCAT 59.070 45.455 0.00 0.00 34.60 3.06
6290 7416 3.808728 CCTTCCTTCTCAACTGTCAACA 58.191 45.455 0.00 0.00 0.00 3.33
6653 7792 5.474876 GTCTTCCAACATGACCAGAAGAATT 59.525 40.000 17.43 0.00 43.21 2.17
6663 7802 2.069273 CCACTCGTCTTCCAACATGAC 58.931 52.381 0.00 0.00 0.00 3.06
6684 7823 2.159170 CCGAAGTGACTTTTTGCCCAAA 60.159 45.455 0.00 0.00 0.00 3.28
6687 7826 1.266989 CTCCGAAGTGACTTTTTGCCC 59.733 52.381 0.00 0.00 0.00 5.36
6740 7879 9.434420 TGAAACCTCAAAATATTATTTTGGCAG 57.566 29.630 28.71 22.33 39.25 4.85
6783 7924 9.483916 CAATGCATCCATATAAACATGTTGATT 57.516 29.630 13.80 0.00 0.00 2.57
6784 7925 8.644216 ACAATGCATCCATATAAACATGTTGAT 58.356 29.630 12.82 13.00 0.00 2.57
6822 7963 9.935682 ATTTTTCATGCTTTACATACATACGAG 57.064 29.630 0.00 0.00 36.64 4.18
6960 8142 7.180408 AGTTGCCCTTAGTAAGTGAAGAGATAA 59.820 37.037 9.05 0.00 0.00 1.75
6991 8173 0.107214 GCCCATTTCGATGACCCTCA 60.107 55.000 0.00 0.00 0.00 3.86
7000 8182 1.885887 CTTTTGTGAGGCCCATTTCGA 59.114 47.619 0.00 0.00 0.00 3.71
7002 8184 2.893489 AGACTTTTGTGAGGCCCATTTC 59.107 45.455 0.00 0.00 0.00 2.17
7029 8211 6.174049 TCTACTATATCTGTCCGTGGAGATG 58.826 44.000 0.00 0.00 31.29 2.90
7046 8228 3.383185 GCCTGCAGTGACTCTTCTACTAT 59.617 47.826 13.81 0.00 0.00 2.12
7050 8232 1.632589 TGCCTGCAGTGACTCTTCTA 58.367 50.000 13.81 0.00 0.00 2.10
7071 8259 8.899375 ATTCGTTTGAAATGGGACAAGCATTTG 61.899 37.037 0.00 0.00 37.76 2.32
7112 8300 7.439157 TCTAGTTTGGTGTGAATTTCATCTG 57.561 36.000 1.78 0.00 0.00 2.90
7116 8304 6.770303 TGTCATCTAGTTTGGTGTGAATTTCA 59.230 34.615 0.00 0.00 0.00 2.69
7169 8364 2.772924 CAAGGGGTGGGCCTCAAT 59.227 61.111 4.53 0.00 37.86 2.57
7190 8385 1.003355 CATGTGAACCCTGGCTCGT 60.003 57.895 0.00 0.00 0.00 4.18
7191 8386 1.746615 CCATGTGAACCCTGGCTCG 60.747 63.158 0.00 0.00 0.00 5.03
7206 8401 2.918266 GAGGGGATCTCATGGAATCCAT 59.082 50.000 21.53 9.36 46.37 3.41
7207 8402 2.089753 AGAGGGGATCTCATGGAATCCA 60.090 50.000 21.53 3.67 44.81 3.41
7208 8403 2.630232 AGAGGGGATCTCATGGAATCC 58.370 52.381 15.26 15.26 44.81 3.01
7209 8404 3.393941 ACAAGAGGGGATCTCATGGAATC 59.606 47.826 0.00 0.00 43.36 2.52
7210 8405 3.137913 CACAAGAGGGGATCTCATGGAAT 59.862 47.826 0.00 0.00 43.36 3.01
7211 8406 2.507058 CACAAGAGGGGATCTCATGGAA 59.493 50.000 0.00 0.00 43.36 3.53
7212 8407 2.121948 CACAAGAGGGGATCTCATGGA 58.878 52.381 0.00 0.00 43.36 3.41
7213 8408 1.142465 CCACAAGAGGGGATCTCATGG 59.858 57.143 0.00 1.44 43.36 3.66
7214 8409 1.476471 GCCACAAGAGGGGATCTCATG 60.476 57.143 0.00 0.00 44.81 3.07
7215 8410 0.842635 GCCACAAGAGGGGATCTCAT 59.157 55.000 0.00 0.00 44.81 2.90
7216 8411 0.252881 AGCCACAAGAGGGGATCTCA 60.253 55.000 0.00 0.00 44.81 3.27
7217 8412 1.414550 GTAGCCACAAGAGGGGATCTC 59.585 57.143 0.00 0.00 37.23 2.75
7218 8413 1.501582 GTAGCCACAAGAGGGGATCT 58.498 55.000 0.00 0.00 41.27 2.75
7219 8414 0.105039 CGTAGCCACAAGAGGGGATC 59.895 60.000 0.00 0.00 0.00 3.36
7220 8415 0.325296 TCGTAGCCACAAGAGGGGAT 60.325 55.000 0.00 0.00 0.00 3.85
7221 8416 0.325296 ATCGTAGCCACAAGAGGGGA 60.325 55.000 0.00 0.00 0.00 4.81
7222 8417 0.179073 CATCGTAGCCACAAGAGGGG 60.179 60.000 0.00 0.00 0.00 4.79
7223 8418 0.811616 GCATCGTAGCCACAAGAGGG 60.812 60.000 0.00 0.00 0.00 4.30
7224 8419 0.176680 AGCATCGTAGCCACAAGAGG 59.823 55.000 0.00 0.00 34.23 3.69
7225 8420 2.015736 AAGCATCGTAGCCACAAGAG 57.984 50.000 0.00 0.00 34.23 2.85
7226 8421 2.028112 AGAAAGCATCGTAGCCACAAGA 60.028 45.455 0.00 0.00 34.23 3.02
7227 8422 2.094894 CAGAAAGCATCGTAGCCACAAG 59.905 50.000 0.00 0.00 34.23 3.16
7228 8423 2.076100 CAGAAAGCATCGTAGCCACAA 58.924 47.619 0.00 0.00 34.23 3.33
7229 8424 1.275010 TCAGAAAGCATCGTAGCCACA 59.725 47.619 0.00 0.00 34.23 4.17
7230 8425 2.010145 TCAGAAAGCATCGTAGCCAC 57.990 50.000 0.00 0.00 34.23 5.01
7231 8426 2.760634 TTCAGAAAGCATCGTAGCCA 57.239 45.000 0.00 0.00 34.23 4.75
7232 8427 4.622701 AATTTCAGAAAGCATCGTAGCC 57.377 40.909 1.28 0.00 34.23 3.93
7233 8428 4.263911 GCAAATTTCAGAAAGCATCGTAGC 59.736 41.667 1.28 0.00 0.00 3.58
7234 8429 5.510674 CAGCAAATTTCAGAAAGCATCGTAG 59.489 40.000 1.28 0.00 0.00 3.51
7235 8430 5.181056 TCAGCAAATTTCAGAAAGCATCGTA 59.819 36.000 1.28 0.00 0.00 3.43
7236 8431 4.022935 TCAGCAAATTTCAGAAAGCATCGT 60.023 37.500 1.28 0.00 0.00 3.73
7237 8432 4.478699 TCAGCAAATTTCAGAAAGCATCG 58.521 39.130 1.28 0.00 0.00 3.84
7238 8433 6.812160 AGATTCAGCAAATTTCAGAAAGCATC 59.188 34.615 1.28 0.40 0.00 3.91
7239 8434 6.590292 CAGATTCAGCAAATTTCAGAAAGCAT 59.410 34.615 1.28 0.00 0.00 3.79
7240 8435 5.924254 CAGATTCAGCAAATTTCAGAAAGCA 59.076 36.000 1.28 0.00 0.00 3.91
7241 8436 6.154445 TCAGATTCAGCAAATTTCAGAAAGC 58.846 36.000 1.28 0.00 0.00 3.51
7242 8437 8.583810 TTTCAGATTCAGCAAATTTCAGAAAG 57.416 30.769 1.28 0.00 0.00 2.62
7243 8438 8.199449 ACTTTCAGATTCAGCAAATTTCAGAAA 58.801 29.630 0.00 0.00 0.00 2.52
7244 8439 7.719483 ACTTTCAGATTCAGCAAATTTCAGAA 58.281 30.769 0.00 0.00 0.00 3.02
7245 8440 7.281040 ACTTTCAGATTCAGCAAATTTCAGA 57.719 32.000 0.00 0.00 0.00 3.27
7246 8441 8.909671 GTTACTTTCAGATTCAGCAAATTTCAG 58.090 33.333 0.00 0.00 0.00 3.02
7247 8442 8.412456 TGTTACTTTCAGATTCAGCAAATTTCA 58.588 29.630 0.00 0.00 0.00 2.69
7248 8443 8.801715 TGTTACTTTCAGATTCAGCAAATTTC 57.198 30.769 0.00 0.00 0.00 2.17
7249 8444 9.598517 TTTGTTACTTTCAGATTCAGCAAATTT 57.401 25.926 0.00 0.00 0.00 1.82
7250 8445 9.768662 ATTTGTTACTTTCAGATTCAGCAAATT 57.231 25.926 0.00 0.00 31.44 1.82
7251 8446 9.199982 CATTTGTTACTTTCAGATTCAGCAAAT 57.800 29.630 0.00 0.00 34.47 2.32
7252 8447 8.196771 ACATTTGTTACTTTCAGATTCAGCAAA 58.803 29.630 0.00 0.00 0.00 3.68
7253 8448 7.715657 ACATTTGTTACTTTCAGATTCAGCAA 58.284 30.769 0.00 0.00 0.00 3.91
7254 8449 7.275888 ACATTTGTTACTTTCAGATTCAGCA 57.724 32.000 0.00 0.00 0.00 4.41
7255 8450 8.579682 AAACATTTGTTACTTTCAGATTCAGC 57.420 30.769 0.00 0.00 37.25 4.26
7340 8535 5.491982 TGCCCACATTTAGTTGTTGTTTTT 58.508 33.333 0.00 0.00 0.00 1.94
7341 8536 5.091261 TGCCCACATTTAGTTGTTGTTTT 57.909 34.783 0.00 0.00 0.00 2.43
7342 8537 4.744795 TGCCCACATTTAGTTGTTGTTT 57.255 36.364 0.00 0.00 0.00 2.83
7343 8538 4.953940 ATGCCCACATTTAGTTGTTGTT 57.046 36.364 0.00 0.00 30.07 2.83
7344 8539 4.343526 TCAATGCCCACATTTAGTTGTTGT 59.656 37.500 0.00 0.00 44.21 3.32
7345 8540 4.880759 TCAATGCCCACATTTAGTTGTTG 58.119 39.130 0.00 0.00 44.21 3.33
7346 8541 5.543507 TTCAATGCCCACATTTAGTTGTT 57.456 34.783 0.00 0.00 44.21 2.83
7347 8542 5.743636 ATTCAATGCCCACATTTAGTTGT 57.256 34.783 0.00 0.00 44.21 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.