Multiple sequence alignment - TraesCS1B01G212400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G212400 chr1B 100.000 4373 0 0 1 4373 385655809 385660181 0.000000e+00 8076.0
1 TraesCS1B01G212400 chr1D 94.519 3284 116 30 270 3531 284045492 284048733 0.000000e+00 5009.0
2 TraesCS1B01G212400 chr1D 92.373 118 6 3 3536 3653 284051275 284051389 9.730000e-37 165.0
3 TraesCS1B01G212400 chr1A 91.907 3398 156 59 270 3609 355628194 355631530 0.000000e+00 4641.0
4 TraesCS1B01G212400 chr1A 88.172 651 53 8 3730 4367 355632218 355632857 0.000000e+00 754.0
5 TraesCS1B01G212400 chr1A 94.253 87 2 2 3598 3682 355631488 355631573 3.550000e-26 130.0
6 TraesCS1B01G212400 chr2A 96.552 58 1 1 6 62 652869335 652869392 1.290000e-15 95.3
7 TraesCS1B01G212400 chr2A 93.333 45 2 1 20 63 655284554 655284510 1.020000e-06 65.8
8 TraesCS1B01G212400 chr2B 91.071 56 3 1 6 61 225254363 225254310 1.690000e-09 75.0
9 TraesCS1B01G212400 chr2B 95.455 44 1 1 22 64 735930848 735930891 7.850000e-08 69.4
10 TraesCS1B01G212400 chr7A 93.478 46 2 1 17 61 218248640 218248685 2.820000e-07 67.6
11 TraesCS1B01G212400 chr7A 95.238 42 1 1 22 62 594413632 594413673 1.020000e-06 65.8
12 TraesCS1B01G212400 chr5D 95.238 42 1 1 21 61 475838321 475838362 1.020000e-06 65.8
13 TraesCS1B01G212400 chr3D 90.000 50 3 2 25 73 39423066 39423018 3.650000e-06 63.9
14 TraesCS1B01G212400 chr6B 88.462 52 4 2 19 68 702660199 702660148 1.310000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G212400 chr1B 385655809 385660181 4372 False 8076.000000 8076 100.000 1 4373 1 chr1B.!!$F1 4372
1 TraesCS1B01G212400 chr1D 284045492 284051389 5897 False 2587.000000 5009 93.446 270 3653 2 chr1D.!!$F1 3383
2 TraesCS1B01G212400 chr1A 355628194 355632857 4663 False 1841.666667 4641 91.444 270 4367 3 chr1A.!!$F1 4097

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
63 64 0.032017 ATGGAACGGAGGGAGTAGCT 60.032 55.0 0.00 0.00 0.00 3.32 F
1103 1165 0.031178 GGGTTTTCAGTGCAGTGCAG 59.969 55.0 20.42 8.18 40.08 4.41 F
2643 2731 0.743345 GCCCGTGGAATCTGTGTACC 60.743 60.0 0.00 0.00 0.00 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1404 1481 0.105039 GATCGACCGGGAGCAAAGAT 59.895 55.0 6.32 0.0 0.00 2.40 R
2736 2824 0.911769 CCTGCTGGATGAAGGTGGTA 59.088 55.0 2.92 0.0 36.69 3.25 R
3910 7160 0.037232 AGTAGCACTCGGGCAAAGAC 60.037 55.0 0.00 0.0 35.83 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.574263 AAAGCTACTCCCTCAGTCCC 58.426 55.000 0.00 0.00 36.43 4.46
20 21 0.413832 AAGCTACTCCCTCAGTCCCA 59.586 55.000 0.00 0.00 36.43 4.37
21 22 0.639392 AGCTACTCCCTCAGTCCCAT 59.361 55.000 0.00 0.00 36.43 4.00
22 23 1.860240 AGCTACTCCCTCAGTCCCATA 59.140 52.381 0.00 0.00 36.43 2.74
23 24 2.247635 AGCTACTCCCTCAGTCCCATAA 59.752 50.000 0.00 0.00 36.43 1.90
24 25 3.116551 AGCTACTCCCTCAGTCCCATAAT 60.117 47.826 0.00 0.00 36.43 1.28
25 26 3.007398 GCTACTCCCTCAGTCCCATAATG 59.993 52.174 0.00 0.00 36.43 1.90
26 27 3.136641 ACTCCCTCAGTCCCATAATGT 57.863 47.619 0.00 0.00 0.00 2.71
27 28 4.280789 ACTCCCTCAGTCCCATAATGTA 57.719 45.455 0.00 0.00 0.00 2.29
28 29 4.631234 ACTCCCTCAGTCCCATAATGTAA 58.369 43.478 0.00 0.00 0.00 2.41
29 30 4.656112 ACTCCCTCAGTCCCATAATGTAAG 59.344 45.833 0.00 0.00 0.00 2.34
30 31 4.890988 TCCCTCAGTCCCATAATGTAAGA 58.109 43.478 0.00 0.00 0.00 2.10
31 32 5.285401 TCCCTCAGTCCCATAATGTAAGAA 58.715 41.667 0.00 0.00 0.00 2.52
32 33 5.729229 TCCCTCAGTCCCATAATGTAAGAAA 59.271 40.000 0.00 0.00 0.00 2.52
33 34 5.823045 CCCTCAGTCCCATAATGTAAGAAAC 59.177 44.000 0.00 0.00 0.00 2.78
34 35 5.523916 CCTCAGTCCCATAATGTAAGAAACG 59.476 44.000 0.00 0.00 0.00 3.60
35 36 6.045072 TCAGTCCCATAATGTAAGAAACGT 57.955 37.500 0.00 0.00 0.00 3.99
36 37 6.103997 TCAGTCCCATAATGTAAGAAACGTC 58.896 40.000 0.00 0.00 0.00 4.34
37 38 6.070995 TCAGTCCCATAATGTAAGAAACGTCT 60.071 38.462 0.00 0.00 34.72 4.18
38 39 6.594159 CAGTCCCATAATGTAAGAAACGTCTT 59.406 38.462 0.00 0.00 46.18 3.01
39 40 7.762615 CAGTCCCATAATGTAAGAAACGTCTTA 59.237 37.037 0.00 0.00 42.53 2.10
51 52 6.642683 AGAAACGTCTTACATTATGGAACG 57.357 37.500 0.62 0.62 0.00 3.95
52 53 5.579511 AGAAACGTCTTACATTATGGAACGG 59.420 40.000 6.60 0.00 0.00 4.44
53 54 4.724074 ACGTCTTACATTATGGAACGGA 57.276 40.909 6.60 0.00 0.00 4.69
54 55 4.679662 ACGTCTTACATTATGGAACGGAG 58.320 43.478 6.60 0.00 0.00 4.63
55 56 4.049186 CGTCTTACATTATGGAACGGAGG 58.951 47.826 0.00 0.00 0.00 4.30
56 57 4.377897 GTCTTACATTATGGAACGGAGGG 58.622 47.826 0.00 0.00 0.00 4.30
57 58 4.100498 GTCTTACATTATGGAACGGAGGGA 59.900 45.833 0.00 0.00 0.00 4.20
58 59 4.344102 TCTTACATTATGGAACGGAGGGAG 59.656 45.833 0.00 0.00 0.00 4.30
59 60 2.478292 ACATTATGGAACGGAGGGAGT 58.522 47.619 0.00 0.00 0.00 3.85
60 61 3.649843 ACATTATGGAACGGAGGGAGTA 58.350 45.455 0.00 0.00 0.00 2.59
61 62 3.641906 ACATTATGGAACGGAGGGAGTAG 59.358 47.826 0.00 0.00 0.00 2.57
62 63 1.700955 TATGGAACGGAGGGAGTAGC 58.299 55.000 0.00 0.00 0.00 3.58
63 64 0.032017 ATGGAACGGAGGGAGTAGCT 60.032 55.000 0.00 0.00 0.00 3.32
64 65 0.683504 TGGAACGGAGGGAGTAGCTC 60.684 60.000 0.00 0.00 0.00 4.09
65 66 0.396001 GGAACGGAGGGAGTAGCTCT 60.396 60.000 0.00 0.00 0.00 4.09
66 67 0.741915 GAACGGAGGGAGTAGCTCTG 59.258 60.000 0.00 0.00 0.00 3.35
67 68 0.039911 AACGGAGGGAGTAGCTCTGT 59.960 55.000 0.00 0.00 38.23 3.41
68 69 0.039911 ACGGAGGGAGTAGCTCTGTT 59.960 55.000 0.00 0.00 33.39 3.16
69 70 1.187087 CGGAGGGAGTAGCTCTGTTT 58.813 55.000 0.00 0.00 0.00 2.83
70 71 1.134965 CGGAGGGAGTAGCTCTGTTTG 60.135 57.143 0.00 0.00 0.00 2.93
71 72 1.406205 GGAGGGAGTAGCTCTGTTTGC 60.406 57.143 0.00 0.00 0.00 3.68
72 73 1.276421 GAGGGAGTAGCTCTGTTTGCA 59.724 52.381 0.00 0.00 0.00 4.08
73 74 1.277557 AGGGAGTAGCTCTGTTTGCAG 59.722 52.381 0.00 0.00 43.87 4.41
74 75 1.082690 GGAGTAGCTCTGTTTGCAGC 58.917 55.000 0.00 0.00 42.29 5.25
76 77 1.731160 GAGTAGCTCTGTTTGCAGCTG 59.269 52.381 10.11 10.11 45.81 4.24
77 78 0.167689 GTAGCTCTGTTTGCAGCTGC 59.832 55.000 31.89 31.89 45.81 5.25
87 88 4.972875 GCAGCTGCATACCCTCTT 57.027 55.556 33.36 0.00 41.59 2.85
88 89 3.181526 GCAGCTGCATACCCTCTTT 57.818 52.632 33.36 0.00 41.59 2.52
89 90 2.332063 GCAGCTGCATACCCTCTTTA 57.668 50.000 33.36 0.00 41.59 1.85
90 91 2.856222 GCAGCTGCATACCCTCTTTAT 58.144 47.619 33.36 0.00 41.59 1.40
91 92 2.810852 GCAGCTGCATACCCTCTTTATC 59.189 50.000 33.36 0.00 41.59 1.75
92 93 3.745480 GCAGCTGCATACCCTCTTTATCA 60.745 47.826 33.36 0.00 41.59 2.15
93 94 4.649692 CAGCTGCATACCCTCTTTATCAT 58.350 43.478 0.00 0.00 0.00 2.45
94 95 5.068636 CAGCTGCATACCCTCTTTATCATT 58.931 41.667 0.00 0.00 0.00 2.57
95 96 5.533903 CAGCTGCATACCCTCTTTATCATTT 59.466 40.000 0.00 0.00 0.00 2.32
96 97 6.040166 CAGCTGCATACCCTCTTTATCATTTT 59.960 38.462 0.00 0.00 0.00 1.82
97 98 6.608808 AGCTGCATACCCTCTTTATCATTTTT 59.391 34.615 1.02 0.00 0.00 1.94
98 99 7.779798 AGCTGCATACCCTCTTTATCATTTTTA 59.220 33.333 1.02 0.00 0.00 1.52
99 100 8.579863 GCTGCATACCCTCTTTATCATTTTTAT 58.420 33.333 0.00 0.00 0.00 1.40
105 106 8.679344 ACCCTCTTTATCATTTTTATTTGGGT 57.321 30.769 0.00 0.00 36.95 4.51
106 107 8.539544 ACCCTCTTTATCATTTTTATTTGGGTG 58.460 33.333 0.00 0.00 39.85 4.61
107 108 8.757877 CCCTCTTTATCATTTTTATTTGGGTGA 58.242 33.333 0.00 0.00 0.00 4.02
108 109 9.807649 CCTCTTTATCATTTTTATTTGGGTGAG 57.192 33.333 0.00 0.00 0.00 3.51
109 110 9.807649 CTCTTTATCATTTTTATTTGGGTGAGG 57.192 33.333 0.00 0.00 0.00 3.86
110 111 9.320295 TCTTTATCATTTTTATTTGGGTGAGGT 57.680 29.630 0.00 0.00 0.00 3.85
111 112 9.369904 CTTTATCATTTTTATTTGGGTGAGGTG 57.630 33.333 0.00 0.00 0.00 4.00
112 113 6.933514 ATCATTTTTATTTGGGTGAGGTGT 57.066 33.333 0.00 0.00 0.00 4.16
113 114 9.535170 TTATCATTTTTATTTGGGTGAGGTGTA 57.465 29.630 0.00 0.00 0.00 2.90
114 115 7.841282 TCATTTTTATTTGGGTGAGGTGTAA 57.159 32.000 0.00 0.00 0.00 2.41
115 116 7.891561 TCATTTTTATTTGGGTGAGGTGTAAG 58.108 34.615 0.00 0.00 0.00 2.34
116 117 7.726291 TCATTTTTATTTGGGTGAGGTGTAAGA 59.274 33.333 0.00 0.00 0.00 2.10
117 118 7.899648 TTTTTATTTGGGTGAGGTGTAAGAA 57.100 32.000 0.00 0.00 0.00 2.52
118 119 7.899648 TTTTATTTGGGTGAGGTGTAAGAAA 57.100 32.000 0.00 0.00 0.00 2.52
119 120 8.485578 TTTTATTTGGGTGAGGTGTAAGAAAT 57.514 30.769 0.00 0.00 0.00 2.17
120 121 5.982890 ATTTGGGTGAGGTGTAAGAAATG 57.017 39.130 0.00 0.00 0.00 2.32
121 122 4.447138 TTGGGTGAGGTGTAAGAAATGT 57.553 40.909 0.00 0.00 0.00 2.71
122 123 3.750371 TGGGTGAGGTGTAAGAAATGTG 58.250 45.455 0.00 0.00 0.00 3.21
123 124 3.392947 TGGGTGAGGTGTAAGAAATGTGA 59.607 43.478 0.00 0.00 0.00 3.58
124 125 4.003648 GGGTGAGGTGTAAGAAATGTGAG 58.996 47.826 0.00 0.00 0.00 3.51
125 126 4.262894 GGGTGAGGTGTAAGAAATGTGAGA 60.263 45.833 0.00 0.00 0.00 3.27
126 127 5.305585 GGTGAGGTGTAAGAAATGTGAGAA 58.694 41.667 0.00 0.00 0.00 2.87
127 128 5.179555 GGTGAGGTGTAAGAAATGTGAGAAC 59.820 44.000 0.00 0.00 0.00 3.01
128 129 5.992217 GTGAGGTGTAAGAAATGTGAGAACT 59.008 40.000 0.00 0.00 0.00 3.01
129 130 5.991606 TGAGGTGTAAGAAATGTGAGAACTG 59.008 40.000 0.00 0.00 0.00 3.16
130 131 6.174720 AGGTGTAAGAAATGTGAGAACTGA 57.825 37.500 0.00 0.00 0.00 3.41
131 132 6.591935 AGGTGTAAGAAATGTGAGAACTGAA 58.408 36.000 0.00 0.00 0.00 3.02
132 133 6.483640 AGGTGTAAGAAATGTGAGAACTGAAC 59.516 38.462 0.00 0.00 0.00 3.18
133 134 6.355638 GTGTAAGAAATGTGAGAACTGAACG 58.644 40.000 0.00 0.00 0.00 3.95
134 135 6.018994 GTGTAAGAAATGTGAGAACTGAACGT 60.019 38.462 0.00 0.00 0.00 3.99
135 136 6.537301 TGTAAGAAATGTGAGAACTGAACGTT 59.463 34.615 0.00 0.00 38.91 3.99
136 137 5.409643 AGAAATGTGAGAACTGAACGTTG 57.590 39.130 5.00 0.00 35.56 4.10
137 138 4.273480 AGAAATGTGAGAACTGAACGTTGG 59.727 41.667 5.00 0.23 35.56 3.77
138 139 1.295792 TGTGAGAACTGAACGTTGGC 58.704 50.000 5.00 0.00 35.56 4.52
139 140 1.134521 TGTGAGAACTGAACGTTGGCT 60.135 47.619 5.00 0.00 35.56 4.75
140 141 1.940613 GTGAGAACTGAACGTTGGCTT 59.059 47.619 5.00 0.00 35.56 4.35
141 142 3.128349 GTGAGAACTGAACGTTGGCTTA 58.872 45.455 5.00 0.00 35.56 3.09
142 143 3.184581 GTGAGAACTGAACGTTGGCTTAG 59.815 47.826 5.00 0.00 35.56 2.18
143 144 3.181469 TGAGAACTGAACGTTGGCTTAGT 60.181 43.478 5.00 0.00 35.56 2.24
144 145 3.131396 AGAACTGAACGTTGGCTTAGTG 58.869 45.455 5.00 0.00 35.56 2.74
145 146 1.878953 ACTGAACGTTGGCTTAGTGG 58.121 50.000 5.00 0.00 0.00 4.00
146 147 0.517316 CTGAACGTTGGCTTAGTGGC 59.483 55.000 5.00 0.00 42.18 5.01
154 155 2.128771 TGGCTTAGTGGCAGGAATTC 57.871 50.000 0.00 0.00 46.76 2.17
155 156 1.340991 TGGCTTAGTGGCAGGAATTCC 60.341 52.381 17.31 17.31 46.76 3.01
156 157 1.017387 GCTTAGTGGCAGGAATTCCG 58.983 55.000 18.82 14.28 42.08 4.30
157 158 1.668419 CTTAGTGGCAGGAATTCCGG 58.332 55.000 19.21 19.21 42.08 5.14
163 164 2.890474 CAGGAATTCCGGCCGTCG 60.890 66.667 26.12 10.11 42.08 5.12
164 165 3.072468 AGGAATTCCGGCCGTCGA 61.072 61.111 26.12 12.73 42.43 4.20
165 166 2.125431 GGAATTCCGGCCGTCGAA 60.125 61.111 26.12 21.23 42.43 3.71
166 167 2.458610 GGAATTCCGGCCGTCGAAC 61.459 63.158 26.12 12.11 42.43 3.95
167 168 2.435410 AATTCCGGCCGTCGAACC 60.435 61.111 26.12 0.00 42.43 3.62
168 169 3.963687 AATTCCGGCCGTCGAACCC 62.964 63.158 26.12 0.00 42.43 4.11
194 195 4.796495 GCCCACCCGCCTTCGAAT 62.796 66.667 0.00 0.00 38.10 3.34
195 196 2.045340 CCCACCCGCCTTCGAATT 60.045 61.111 0.00 0.00 38.10 2.17
196 197 2.112815 CCCACCCGCCTTCGAATTC 61.113 63.158 0.00 0.00 38.10 2.17
197 198 1.078426 CCACCCGCCTTCGAATTCT 60.078 57.895 0.00 0.00 38.10 2.40
198 199 1.090052 CCACCCGCCTTCGAATTCTC 61.090 60.000 0.00 0.00 38.10 2.87
199 200 0.391130 CACCCGCCTTCGAATTCTCA 60.391 55.000 0.00 0.00 38.10 3.27
200 201 0.391263 ACCCGCCTTCGAATTCTCAC 60.391 55.000 0.00 0.00 38.10 3.51
201 202 1.421410 CCCGCCTTCGAATTCTCACG 61.421 60.000 0.00 0.61 38.10 4.35
202 203 0.736325 CCGCCTTCGAATTCTCACGT 60.736 55.000 0.00 0.00 38.10 4.49
203 204 1.068474 CGCCTTCGAATTCTCACGTT 58.932 50.000 0.00 0.00 38.10 3.99
204 205 1.201812 CGCCTTCGAATTCTCACGTTG 60.202 52.381 0.00 0.00 38.10 4.10
205 206 1.128692 GCCTTCGAATTCTCACGTTGG 59.871 52.381 0.00 0.00 0.00 3.77
206 207 2.413837 CCTTCGAATTCTCACGTTGGT 58.586 47.619 0.00 0.00 0.00 3.67
207 208 2.157668 CCTTCGAATTCTCACGTTGGTG 59.842 50.000 0.00 0.00 45.78 4.17
208 209 1.144969 TCGAATTCTCACGTTGGTGC 58.855 50.000 3.52 0.00 44.03 5.01
209 210 1.148310 CGAATTCTCACGTTGGTGCT 58.852 50.000 3.52 0.00 44.03 4.40
210 211 1.136252 CGAATTCTCACGTTGGTGCTG 60.136 52.381 3.52 0.00 44.03 4.41
211 212 1.197721 GAATTCTCACGTTGGTGCTGG 59.802 52.381 0.00 0.00 44.03 4.85
212 213 0.396435 ATTCTCACGTTGGTGCTGGA 59.604 50.000 0.00 0.00 44.03 3.86
213 214 0.179234 TTCTCACGTTGGTGCTGGAA 59.821 50.000 0.00 0.00 44.03 3.53
214 215 0.531974 TCTCACGTTGGTGCTGGAAC 60.532 55.000 0.00 0.00 44.03 3.62
215 216 0.532862 CTCACGTTGGTGCTGGAACT 60.533 55.000 0.00 0.00 44.03 3.01
216 217 0.813610 TCACGTTGGTGCTGGAACTG 60.814 55.000 0.00 0.00 44.03 3.16
217 218 1.525995 ACGTTGGTGCTGGAACTGG 60.526 57.895 0.00 0.00 0.00 4.00
218 219 1.227823 CGTTGGTGCTGGAACTGGA 60.228 57.895 0.00 0.00 0.00 3.86
219 220 1.507141 CGTTGGTGCTGGAACTGGAC 61.507 60.000 0.00 0.00 46.77 4.02
224 225 2.717639 GTGCTGGAACTGGACCATAT 57.282 50.000 0.00 0.00 42.24 1.78
225 226 3.004752 GTGCTGGAACTGGACCATATT 57.995 47.619 0.00 0.00 42.24 1.28
226 227 3.356290 GTGCTGGAACTGGACCATATTT 58.644 45.455 0.00 0.00 42.24 1.40
227 228 3.378427 GTGCTGGAACTGGACCATATTTC 59.622 47.826 0.00 0.00 42.24 2.17
228 229 3.266772 TGCTGGAACTGGACCATATTTCT 59.733 43.478 0.00 0.00 36.79 2.52
229 230 3.629398 GCTGGAACTGGACCATATTTCTG 59.371 47.826 0.00 0.00 36.79 3.02
230 231 3.620488 TGGAACTGGACCATATTTCTGC 58.380 45.455 0.00 0.00 32.03 4.26
231 232 3.010027 TGGAACTGGACCATATTTCTGCA 59.990 43.478 0.00 0.00 32.03 4.41
232 233 3.378427 GGAACTGGACCATATTTCTGCAC 59.622 47.826 0.00 0.00 0.00 4.57
233 234 4.265073 GAACTGGACCATATTTCTGCACT 58.735 43.478 0.00 0.00 0.00 4.40
234 235 4.307032 ACTGGACCATATTTCTGCACTT 57.693 40.909 0.00 0.00 0.00 3.16
235 236 4.666512 ACTGGACCATATTTCTGCACTTT 58.333 39.130 0.00 0.00 0.00 2.66
236 237 5.079643 ACTGGACCATATTTCTGCACTTTT 58.920 37.500 0.00 0.00 0.00 2.27
237 238 5.047802 ACTGGACCATATTTCTGCACTTTTG 60.048 40.000 0.00 0.00 0.00 2.44
238 239 4.220382 TGGACCATATTTCTGCACTTTTGG 59.780 41.667 0.00 0.00 0.00 3.28
239 240 4.220602 GGACCATATTTCTGCACTTTTGGT 59.779 41.667 0.00 0.00 38.86 3.67
241 242 4.588528 ACCATATTTCTGCACTTTTGGTGT 59.411 37.500 0.00 0.00 46.86 4.16
242 243 5.772672 ACCATATTTCTGCACTTTTGGTGTA 59.227 36.000 0.00 0.00 46.86 2.90
243 244 6.266558 ACCATATTTCTGCACTTTTGGTGTAA 59.733 34.615 0.00 0.00 46.86 2.41
244 245 6.586082 CCATATTTCTGCACTTTTGGTGTAAC 59.414 38.462 0.00 0.00 46.86 2.50
260 261 5.725110 GTGTAACCAGCAATACATCTCTG 57.275 43.478 0.00 0.00 34.77 3.35
262 263 4.469586 TGTAACCAGCAATACATCTCTGGA 59.530 41.667 13.39 0.00 46.80 3.86
263 264 3.834489 ACCAGCAATACATCTCTGGAG 57.166 47.619 13.39 0.00 46.80 3.86
264 265 2.158842 ACCAGCAATACATCTCTGGAGC 60.159 50.000 13.39 0.00 46.80 4.70
265 266 2.133553 CAGCAATACATCTCTGGAGCG 58.866 52.381 0.00 0.00 0.00 5.03
266 267 1.069823 AGCAATACATCTCTGGAGCGG 59.930 52.381 0.00 0.00 0.00 5.52
267 268 1.202580 GCAATACATCTCTGGAGCGGT 60.203 52.381 0.00 0.00 0.00 5.68
268 269 2.743183 GCAATACATCTCTGGAGCGGTT 60.743 50.000 0.00 0.00 0.00 4.44
430 431 2.965831 AGCTGGATCGGCAATAGACTAA 59.034 45.455 11.02 0.00 38.37 2.24
431 432 3.006323 AGCTGGATCGGCAATAGACTAAG 59.994 47.826 11.02 0.00 38.37 2.18
432 433 3.243907 GCTGGATCGGCAATAGACTAAGT 60.244 47.826 4.71 0.00 35.55 2.24
433 434 4.022242 GCTGGATCGGCAATAGACTAAGTA 60.022 45.833 4.71 0.00 35.55 2.24
434 435 5.704888 CTGGATCGGCAATAGACTAAGTAG 58.295 45.833 0.00 0.00 0.00 2.57
435 436 5.138276 TGGATCGGCAATAGACTAAGTAGT 58.862 41.667 0.00 0.00 39.71 2.73
436 437 5.009710 TGGATCGGCAATAGACTAAGTAGTG 59.990 44.000 0.00 0.00 36.50 2.74
437 438 4.913335 TCGGCAATAGACTAAGTAGTGG 57.087 45.455 0.00 0.00 36.50 4.00
491 512 1.608590 TGGCTGCTTGTTTTAGCTCAC 59.391 47.619 0.00 0.00 41.76 3.51
492 513 1.068264 GGCTGCTTGTTTTAGCTCACC 60.068 52.381 0.00 0.00 41.76 4.02
518 539 0.234884 GCTAATCGCGCGGCTTAATT 59.765 50.000 31.69 22.84 0.00 1.40
519 540 1.458064 GCTAATCGCGCGGCTTAATTA 59.542 47.619 31.69 22.73 0.00 1.40
587 608 1.276421 TGACCAGAAGTAGAGCCAAGC 59.724 52.381 0.00 0.00 0.00 4.01
588 609 0.247736 ACCAGAAGTAGAGCCAAGCG 59.752 55.000 0.00 0.00 0.00 4.68
605 626 2.629051 AGCGCCCAAGTCATAAACTAC 58.371 47.619 2.29 0.00 37.17 2.73
606 627 2.236395 AGCGCCCAAGTCATAAACTACT 59.764 45.455 2.29 0.00 37.17 2.57
607 628 2.351726 GCGCCCAAGTCATAAACTACTG 59.648 50.000 0.00 0.00 37.17 2.74
608 629 2.936498 CGCCCAAGTCATAAACTACTGG 59.064 50.000 0.00 0.00 37.17 4.00
609 630 2.683362 GCCCAAGTCATAAACTACTGGC 59.317 50.000 0.00 0.00 37.17 4.85
610 631 3.872240 GCCCAAGTCATAAACTACTGGCA 60.872 47.826 0.00 0.00 41.87 4.92
611 632 4.331968 CCCAAGTCATAAACTACTGGCAA 58.668 43.478 0.00 0.00 37.17 4.52
612 633 4.396166 CCCAAGTCATAAACTACTGGCAAG 59.604 45.833 0.00 0.00 37.17 4.01
619 640 0.178992 AACTACTGGCAAGGCAAGCA 60.179 50.000 0.00 0.00 31.74 3.91
621 642 1.930908 CTACTGGCAAGGCAAGCAGC 61.931 60.000 0.00 0.00 44.65 5.25
653 682 2.514824 GGATGCCTTCCGCTCACC 60.515 66.667 0.00 0.00 38.78 4.02
654 683 2.514824 GATGCCTTCCGCTCACCC 60.515 66.667 0.00 0.00 38.78 4.61
655 684 3.329542 GATGCCTTCCGCTCACCCA 62.330 63.158 0.00 0.00 38.78 4.51
656 685 3.628646 ATGCCTTCCGCTCACCCAC 62.629 63.158 0.00 0.00 38.78 4.61
662 691 4.003788 CCGCTCACCCACGGTCTT 62.004 66.667 0.00 0.00 44.46 3.01
663 692 2.432628 CGCTCACCCACGGTCTTC 60.433 66.667 0.00 0.00 31.02 2.87
664 693 2.932234 CGCTCACCCACGGTCTTCT 61.932 63.158 0.00 0.00 31.02 2.85
665 694 1.371558 GCTCACCCACGGTCTTCTT 59.628 57.895 0.00 0.00 31.02 2.52
680 709 4.170256 GTCTTCTTTCTCCTCGCTGTTAG 58.830 47.826 0.00 0.00 0.00 2.34
683 712 3.353557 TCTTTCTCCTCGCTGTTAGCTA 58.646 45.455 0.00 0.00 39.60 3.32
684 713 3.128938 TCTTTCTCCTCGCTGTTAGCTAC 59.871 47.826 0.00 0.00 39.60 3.58
685 714 1.015109 TCTCCTCGCTGTTAGCTACG 58.985 55.000 0.00 0.00 39.60 3.51
695 744 4.669728 CGCTGTTAGCTACGAGTATGTTAC 59.330 45.833 0.00 0.00 39.60 2.50
697 746 5.908499 GCTGTTAGCTACGAGTATGTTACTC 59.092 44.000 0.00 4.88 43.66 2.59
757 806 3.577649 TCTGAGCTTAACTCTGAACCG 57.422 47.619 10.17 0.00 46.73 4.44
763 812 4.561105 AGCTTAACTCTGAACCGAAAGAG 58.439 43.478 0.00 0.00 44.57 2.85
765 814 4.623595 GCTTAACTCTGAACCGAAAGAGAG 59.376 45.833 6.69 0.00 42.15 3.20
766 815 5.565045 GCTTAACTCTGAACCGAAAGAGAGA 60.565 44.000 6.69 0.00 42.15 3.10
767 816 4.513198 AACTCTGAACCGAAAGAGAGAG 57.487 45.455 6.69 0.00 42.15 3.20
773 822 3.445450 TGAACCGAAAGAGAGAGATGAGG 59.555 47.826 0.00 0.00 0.00 3.86
781 830 2.442878 AGAGAGAGATGAGGAGCAGCTA 59.557 50.000 0.00 0.00 44.71 3.32
782 831 3.117550 AGAGAGAGATGAGGAGCAGCTAA 60.118 47.826 0.00 0.00 44.71 3.09
784 833 3.828451 AGAGAGATGAGGAGCAGCTAATC 59.172 47.826 0.00 0.00 44.71 1.75
785 834 3.573538 GAGAGATGAGGAGCAGCTAATCA 59.426 47.826 10.67 10.67 44.71 2.57
786 835 3.575256 AGAGATGAGGAGCAGCTAATCAG 59.425 47.826 13.13 0.00 44.71 2.90
787 836 3.307506 AGATGAGGAGCAGCTAATCAGT 58.692 45.455 13.13 2.84 42.46 3.41
788 837 4.478203 AGATGAGGAGCAGCTAATCAGTA 58.522 43.478 13.13 0.00 42.46 2.74
789 838 4.523943 AGATGAGGAGCAGCTAATCAGTAG 59.476 45.833 13.13 0.00 42.46 2.57
790 839 3.903467 TGAGGAGCAGCTAATCAGTAGA 58.097 45.455 0.00 0.00 30.50 2.59
830 879 4.476752 GCCGCCCACGTCCCATAA 62.477 66.667 0.00 0.00 37.70 1.90
935 984 3.050275 GCTCCGGTGTCTTGGTGC 61.050 66.667 0.00 0.00 37.56 5.01
945 1002 0.755327 GTCTTGGTGCCTTGGGTTGT 60.755 55.000 0.00 0.00 0.00 3.32
990 1047 1.284785 CCTATCCCTCCACCTTTTGCA 59.715 52.381 0.00 0.00 0.00 4.08
1058 1115 4.033776 CCCAAGGCCGCCTCTGAA 62.034 66.667 13.72 0.00 30.89 3.02
1099 1161 3.096092 TCTTTTGGGTTTTCAGTGCAGT 58.904 40.909 0.00 0.00 0.00 4.40
1100 1162 2.957491 TTTGGGTTTTCAGTGCAGTG 57.043 45.000 15.76 15.76 0.00 3.66
1101 1163 0.459489 TTGGGTTTTCAGTGCAGTGC 59.541 50.000 17.07 8.58 0.00 4.40
1102 1164 0.682532 TGGGTTTTCAGTGCAGTGCA 60.683 50.000 15.37 15.37 35.60 4.57
1103 1165 0.031178 GGGTTTTCAGTGCAGTGCAG 59.969 55.000 20.42 8.18 40.08 4.41
1162 1232 3.090532 GGGGGAGGCCACTCGATT 61.091 66.667 5.01 0.00 44.93 3.34
1387 1464 4.112341 CTGTCCGTCCGTCCGTCC 62.112 72.222 0.00 0.00 0.00 4.79
1404 1481 2.094390 CGTCCGTCATTAGAACCTTCCA 60.094 50.000 0.00 0.00 0.00 3.53
1486 1563 1.340017 TGCTGGTAATGGCAAGGAGAC 60.340 52.381 0.00 0.00 35.40 3.36
1651 1731 3.115892 GACGGCGCGTTCCATTGA 61.116 61.111 6.90 0.00 41.37 2.57
1658 1738 1.331756 GCGCGTTCCATTGATTCATCT 59.668 47.619 8.43 0.00 0.00 2.90
1852 1932 3.138798 CATCGTCCCCGTCCTCGT 61.139 66.667 0.00 0.00 35.01 4.18
1946 2029 6.310960 CGTCAGTATCCTCTTATCTTCATCG 58.689 44.000 0.00 0.00 0.00 3.84
1977 2060 3.057946 GTGATTCAGTCAGGCAAAAGTCC 60.058 47.826 0.00 0.00 37.56 3.85
2277 2365 2.745884 TTCGGCGCCATCAACCTG 60.746 61.111 28.98 7.38 0.00 4.00
2640 2728 1.779061 AAGGCCCGTGGAATCTGTGT 61.779 55.000 0.00 0.00 0.00 3.72
2643 2731 0.743345 GCCCGTGGAATCTGTGTACC 60.743 60.000 0.00 0.00 0.00 3.34
2676 2764 2.268920 GCCGTGAAGATCCTGGCA 59.731 61.111 6.45 0.00 45.06 4.92
2736 2824 1.997874 GTCCCTGGGGCAGATGACT 60.998 63.158 13.71 0.00 33.50 3.41
3201 3289 1.954146 CAACTCGGTGGTGGTGACG 60.954 63.158 0.00 0.00 0.00 4.35
3359 3447 0.250338 AAACAAGTCCTCCGCCACTC 60.250 55.000 0.00 0.00 0.00 3.51
3360 3448 2.125912 CAAGTCCTCCGCCACTCG 60.126 66.667 0.00 0.00 38.08 4.18
3361 3449 4.070552 AAGTCCTCCGCCACTCGC 62.071 66.667 0.00 0.00 36.73 5.03
3455 3549 0.179032 AACTTGGACACATCACGCCA 60.179 50.000 0.00 0.00 0.00 5.69
3468 3562 0.101399 CACGCCATAGAAGTCTCGCT 59.899 55.000 0.00 0.00 0.00 4.93
3494 3588 8.673711 TGGATATAACTCTTGTTTTGTACATGC 58.326 33.333 0.00 0.00 36.44 4.06
3501 3595 4.756642 TCTTGTTTTGTACATGCTCAGAGG 59.243 41.667 0.00 0.00 36.44 3.69
3506 3600 1.977854 TGTACATGCTCAGAGGGTGTT 59.022 47.619 0.00 0.00 0.00 3.32
3514 3608 2.547218 GCTCAGAGGGTGTTGTTAACGA 60.547 50.000 0.00 0.00 0.00 3.85
3531 3625 6.127281 TGTTAACGATAACAAGCTGGGAGATA 60.127 38.462 15.02 0.00 46.34 1.98
3533 3627 4.887748 ACGATAACAAGCTGGGAGATATG 58.112 43.478 0.00 0.00 0.00 1.78
3534 3628 4.588951 ACGATAACAAGCTGGGAGATATGA 59.411 41.667 0.00 0.00 0.00 2.15
3535 3629 5.070446 ACGATAACAAGCTGGGAGATATGAA 59.930 40.000 0.00 0.00 0.00 2.57
3536 3630 5.991606 CGATAACAAGCTGGGAGATATGAAA 59.008 40.000 0.00 0.00 0.00 2.69
3537 3631 6.146837 CGATAACAAGCTGGGAGATATGAAAG 59.853 42.308 0.00 0.00 0.00 2.62
3538 3632 4.162040 ACAAGCTGGGAGATATGAAAGG 57.838 45.455 0.00 0.00 0.00 3.11
3539 3633 2.883386 CAAGCTGGGAGATATGAAAGGC 59.117 50.000 0.00 0.00 0.00 4.35
3551 5360 8.739972 GGAGATATGAAAGGCAGTTTTTCTTTA 58.260 33.333 0.00 0.00 35.94 1.85
3598 6226 5.941948 ATTTTCAGTTCGTTGTCCTTAGG 57.058 39.130 0.00 0.00 0.00 2.69
3682 6312 2.514803 ACCGCATAAGGTTTTCTTGCT 58.485 42.857 0.00 0.00 43.00 3.91
3684 6314 3.244976 CCGCATAAGGTTTTCTTGCTTG 58.755 45.455 0.00 0.00 36.93 4.01
3685 6315 3.305335 CCGCATAAGGTTTTCTTGCTTGT 60.305 43.478 0.00 0.00 36.93 3.16
3686 6316 3.914364 CGCATAAGGTTTTCTTGCTTGTC 59.086 43.478 0.00 0.00 36.93 3.18
3688 6318 5.288804 GCATAAGGTTTTCTTGCTTGTCAA 58.711 37.500 0.00 0.00 36.93 3.18
3689 6319 5.752955 GCATAAGGTTTTCTTGCTTGTCAAA 59.247 36.000 0.00 0.00 36.93 2.69
3690 6320 6.257630 GCATAAGGTTTTCTTGCTTGTCAAAA 59.742 34.615 0.00 0.00 36.93 2.44
3691 6321 7.201600 GCATAAGGTTTTCTTGCTTGTCAAAAA 60.202 33.333 0.00 0.00 36.93 1.94
3767 7017 3.537793 GCGGTATGCTAGTTTTATGGC 57.462 47.619 0.00 0.00 41.73 4.40
3768 7018 2.875933 GCGGTATGCTAGTTTTATGGCA 59.124 45.455 0.00 0.00 41.20 4.92
3769 7019 3.314080 GCGGTATGCTAGTTTTATGGCAA 59.686 43.478 0.00 0.00 40.28 4.52
3770 7020 4.554723 GCGGTATGCTAGTTTTATGGCAAG 60.555 45.833 0.00 0.00 40.28 4.01
3771 7021 4.024048 CGGTATGCTAGTTTTATGGCAAGG 60.024 45.833 0.00 0.00 40.28 3.61
3772 7022 5.130350 GGTATGCTAGTTTTATGGCAAGGA 58.870 41.667 0.00 0.00 40.28 3.36
3855 7105 8.156820 TGTTATCAACCTACTGATGGATATTGG 58.843 37.037 0.00 0.00 36.69 3.16
3898 7148 4.601857 TCCTTCCTATTCCAAACACTCCTT 59.398 41.667 0.00 0.00 0.00 3.36
3903 7153 1.975660 TTCCAAACACTCCTTTCCCG 58.024 50.000 0.00 0.00 0.00 5.14
3905 7155 0.893727 CCAAACACTCCTTTCCCGGG 60.894 60.000 16.85 16.85 0.00 5.73
3906 7156 1.228459 AAACACTCCTTTCCCGGGC 60.228 57.895 18.49 0.00 0.00 6.13
3910 7160 4.814294 CTCCTTTCCCGGGCGTCG 62.814 72.222 18.49 2.99 38.88 5.12
3914 7164 3.584868 CTTTCCCGGGCGTCGTCTT 62.585 63.158 18.49 0.00 37.11 3.01
3915 7165 3.167822 TTTCCCGGGCGTCGTCTTT 62.168 57.895 18.49 0.00 37.11 2.52
3922 7172 3.479269 GCGTCGTCTTTGCCCGAG 61.479 66.667 0.00 0.00 33.10 4.63
3938 7188 2.675423 AGTGCTACTCGTCCCGCA 60.675 61.111 0.00 0.00 0.00 5.69
3951 7201 2.401766 CCCGCAGTTCCTCATGTGC 61.402 63.158 0.00 0.00 0.00 4.57
3969 7219 2.911143 CCCCCTCCTTCGATGGTG 59.089 66.667 16.29 13.73 0.00 4.17
3970 7220 2.190578 CCCCTCCTTCGATGGTGC 59.809 66.667 16.29 0.00 0.00 5.01
3998 7248 1.065854 CCAAGTGTCCTCCTCCATGAC 60.066 57.143 0.00 0.00 0.00 3.06
4003 7253 1.625315 TGTCCTCCTCCATGACAGTTG 59.375 52.381 0.00 0.00 34.28 3.16
4010 7260 1.228521 CCATGACAGTTGGTGGCCA 60.229 57.895 0.00 0.00 29.87 5.36
4038 7288 1.337260 GCGCCATGGACATACTCTAGG 60.337 57.143 18.40 0.00 0.00 3.02
4046 7296 2.362717 GGACATACTCTAGGAGTGGTGC 59.637 54.545 10.06 9.36 43.30 5.01
4063 7313 4.216257 GTGGTGCTTGAGTTGAATACATGT 59.784 41.667 2.69 2.69 0.00 3.21
4082 7332 4.508551 TGTTGCTTCATGGATACCTCAT 57.491 40.909 0.00 0.00 0.00 2.90
4083 7333 5.628797 TGTTGCTTCATGGATACCTCATA 57.371 39.130 0.00 0.00 0.00 2.15
4092 7342 3.501349 TGGATACCTCATAGTGGAGCTC 58.499 50.000 4.71 4.71 33.47 4.09
4097 7347 1.606668 CCTCATAGTGGAGCTCGAGTC 59.393 57.143 15.13 10.09 33.47 3.36
4107 7357 4.778415 CTCGAGTCCGCACCACCG 62.778 72.222 3.62 0.00 35.37 4.94
4110 7360 3.371063 GAGTCCGCACCACCGAGA 61.371 66.667 0.00 0.00 0.00 4.04
4115 7365 2.202797 CGCACCACCGAGATCCAG 60.203 66.667 0.00 0.00 0.00 3.86
4118 7368 2.362503 ACCACCGAGATCCAGCGA 60.363 61.111 2.24 0.00 0.00 4.93
4125 7375 2.628178 ACCGAGATCCAGCGAATATCAA 59.372 45.455 2.24 0.00 0.00 2.57
4138 7388 5.992217 AGCGAATATCAAGGTAGAATGGAAC 59.008 40.000 0.00 0.00 0.00 3.62
4141 7391 6.144080 CGAATATCAAGGTAGAATGGAACGAC 59.856 42.308 0.00 0.00 0.00 4.34
4143 7393 4.188247 TCAAGGTAGAATGGAACGACTG 57.812 45.455 0.00 0.00 0.00 3.51
4158 7408 3.798202 ACGACTGAAGGATTGCCTAATC 58.202 45.455 0.00 0.00 46.28 1.75
4174 7424 4.797933 GCCTAATCTAGCTCTAACAGGCAC 60.798 50.000 18.65 0.00 45.31 5.01
4175 7425 3.828875 AATCTAGCTCTAACAGGCACC 57.171 47.619 0.00 0.00 0.00 5.01
4193 7443 4.560743 TGGTGTGCCAGCGAGCAA 62.561 61.111 5.21 0.00 46.19 3.91
4197 7447 1.823470 TGTGCCAGCGAGCAAGTTT 60.823 52.632 5.21 0.00 46.19 2.66
4205 7467 3.231965 CAGCGAGCAAGTTTGAATTCAG 58.768 45.455 8.41 0.00 0.00 3.02
4239 7501 2.355412 CCTGCATTGTGATGGTGAGAGA 60.355 50.000 0.00 0.00 33.72 3.10
4241 7503 2.286872 GCATTGTGATGGTGAGAGAGG 58.713 52.381 0.00 0.00 33.72 3.69
4250 7512 4.042062 TGATGGTGAGAGAGGTGTGAAAAT 59.958 41.667 0.00 0.00 0.00 1.82
4271 7533 6.738352 AATCAAGATTTTTCGATATTGCGC 57.262 33.333 0.00 0.00 30.39 6.09
4293 7555 3.057386 CACTGTTGGACATGCTGCAAATA 60.057 43.478 6.36 0.00 30.97 1.40
4315 7577 8.845413 AATATGCATGGTGTTTTGTTTTGTAT 57.155 26.923 10.16 0.00 0.00 2.29
4340 7602 5.464722 ACATAGCTTCATCAGTTAATGCTCG 59.535 40.000 0.00 0.00 0.00 5.03
4361 7623 5.727239 CTCGATCTTCATTTGAAGCTTGAGC 60.727 44.000 20.33 6.86 44.75 4.26
4372 7634 3.312404 GCTTGAGCTCAACCTGTGA 57.688 52.632 25.16 3.27 38.21 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.203313 TGGGACTGAGGGAGTAGCTTT 60.203 52.381 0.00 0.00 33.83 3.51
1 2 0.413832 TGGGACTGAGGGAGTAGCTT 59.586 55.000 0.00 0.00 33.83 3.74
2 3 0.639392 ATGGGACTGAGGGAGTAGCT 59.361 55.000 0.00 0.00 33.83 3.32
3 4 2.383442 TATGGGACTGAGGGAGTAGC 57.617 55.000 0.00 0.00 33.83 3.58
4 5 4.227197 ACATTATGGGACTGAGGGAGTAG 58.773 47.826 0.00 0.00 33.83 2.57
5 6 4.280789 ACATTATGGGACTGAGGGAGTA 57.719 45.455 0.00 0.00 33.83 2.59
6 7 3.136641 ACATTATGGGACTGAGGGAGT 57.863 47.619 0.00 0.00 37.76 3.85
7 8 4.901849 TCTTACATTATGGGACTGAGGGAG 59.098 45.833 0.00 0.00 0.00 4.30
8 9 4.890988 TCTTACATTATGGGACTGAGGGA 58.109 43.478 0.00 0.00 0.00 4.20
9 10 5.630415 TTCTTACATTATGGGACTGAGGG 57.370 43.478 0.00 0.00 0.00 4.30
10 11 5.523916 CGTTTCTTACATTATGGGACTGAGG 59.476 44.000 0.00 0.00 0.00 3.86
11 12 6.106673 ACGTTTCTTACATTATGGGACTGAG 58.893 40.000 0.00 0.00 0.00 3.35
12 13 6.045072 ACGTTTCTTACATTATGGGACTGA 57.955 37.500 0.00 0.00 0.00 3.41
13 14 6.106673 AGACGTTTCTTACATTATGGGACTG 58.893 40.000 0.00 0.00 0.00 3.51
14 15 6.295719 AGACGTTTCTTACATTATGGGACT 57.704 37.500 0.00 0.00 0.00 3.85
15 16 6.980051 AAGACGTTTCTTACATTATGGGAC 57.020 37.500 0.00 0.00 40.54 4.46
26 27 7.276218 CCGTTCCATAATGTAAGACGTTTCTTA 59.724 37.037 0.00 0.00 42.44 2.10
27 28 6.091713 CCGTTCCATAATGTAAGACGTTTCTT 59.908 38.462 0.00 0.00 44.70 2.52
28 29 5.579511 CCGTTCCATAATGTAAGACGTTTCT 59.420 40.000 0.00 0.00 0.00 2.52
29 30 5.577945 TCCGTTCCATAATGTAAGACGTTTC 59.422 40.000 0.00 0.00 0.00 2.78
30 31 5.481105 TCCGTTCCATAATGTAAGACGTTT 58.519 37.500 0.00 0.00 0.00 3.60
31 32 5.075858 TCCGTTCCATAATGTAAGACGTT 57.924 39.130 0.00 0.00 0.00 3.99
32 33 4.441079 CCTCCGTTCCATAATGTAAGACGT 60.441 45.833 0.00 0.00 0.00 4.34
33 34 4.049186 CCTCCGTTCCATAATGTAAGACG 58.951 47.826 0.00 0.00 0.00 4.18
34 35 4.100498 TCCCTCCGTTCCATAATGTAAGAC 59.900 45.833 0.00 0.00 0.00 3.01
35 36 4.291792 TCCCTCCGTTCCATAATGTAAGA 58.708 43.478 0.00 0.00 0.00 2.10
36 37 4.101119 ACTCCCTCCGTTCCATAATGTAAG 59.899 45.833 0.00 0.00 0.00 2.34
37 38 4.035112 ACTCCCTCCGTTCCATAATGTAA 58.965 43.478 0.00 0.00 0.00 2.41
38 39 3.649843 ACTCCCTCCGTTCCATAATGTA 58.350 45.455 0.00 0.00 0.00 2.29
39 40 2.478292 ACTCCCTCCGTTCCATAATGT 58.522 47.619 0.00 0.00 0.00 2.71
40 41 3.555168 GCTACTCCCTCCGTTCCATAATG 60.555 52.174 0.00 0.00 0.00 1.90
41 42 2.633481 GCTACTCCCTCCGTTCCATAAT 59.367 50.000 0.00 0.00 0.00 1.28
42 43 2.037144 GCTACTCCCTCCGTTCCATAA 58.963 52.381 0.00 0.00 0.00 1.90
43 44 1.217183 AGCTACTCCCTCCGTTCCATA 59.783 52.381 0.00 0.00 0.00 2.74
44 45 0.032017 AGCTACTCCCTCCGTTCCAT 60.032 55.000 0.00 0.00 0.00 3.41
45 46 0.683504 GAGCTACTCCCTCCGTTCCA 60.684 60.000 0.00 0.00 0.00 3.53
46 47 0.396001 AGAGCTACTCCCTCCGTTCC 60.396 60.000 0.00 0.00 0.00 3.62
47 48 0.741915 CAGAGCTACTCCCTCCGTTC 59.258 60.000 0.00 0.00 0.00 3.95
48 49 0.039911 ACAGAGCTACTCCCTCCGTT 59.960 55.000 0.00 0.00 0.00 4.44
49 50 0.039911 AACAGAGCTACTCCCTCCGT 59.960 55.000 0.00 0.00 0.00 4.69
50 51 1.134965 CAAACAGAGCTACTCCCTCCG 60.135 57.143 0.00 0.00 0.00 4.63
51 52 1.406205 GCAAACAGAGCTACTCCCTCC 60.406 57.143 0.00 0.00 0.00 4.30
52 53 1.276421 TGCAAACAGAGCTACTCCCTC 59.724 52.381 0.00 0.00 0.00 4.30
53 54 1.352083 TGCAAACAGAGCTACTCCCT 58.648 50.000 0.00 0.00 0.00 4.20
54 55 3.935993 TGCAAACAGAGCTACTCCC 57.064 52.632 0.00 0.00 0.00 4.30
70 71 2.332063 TAAAGAGGGTATGCAGCTGC 57.668 50.000 31.89 31.89 42.50 5.25
71 72 4.077300 TGATAAAGAGGGTATGCAGCTG 57.923 45.455 10.11 10.11 0.00 4.24
72 73 4.989875 ATGATAAAGAGGGTATGCAGCT 57.010 40.909 0.00 0.00 0.00 4.24
73 74 6.396829 AAAATGATAAAGAGGGTATGCAGC 57.603 37.500 0.00 0.00 0.00 5.25
79 80 9.777008 ACCCAAATAAAAATGATAAAGAGGGTA 57.223 29.630 0.00 0.00 41.20 3.69
80 81 8.539544 CACCCAAATAAAAATGATAAAGAGGGT 58.460 33.333 0.00 0.00 43.63 4.34
81 82 8.757877 TCACCCAAATAAAAATGATAAAGAGGG 58.242 33.333 0.00 0.00 36.17 4.30
82 83 9.807649 CTCACCCAAATAAAAATGATAAAGAGG 57.192 33.333 0.00 0.00 0.00 3.69
83 84 9.807649 CCTCACCCAAATAAAAATGATAAAGAG 57.192 33.333 0.00 0.00 0.00 2.85
84 85 9.320295 ACCTCACCCAAATAAAAATGATAAAGA 57.680 29.630 0.00 0.00 0.00 2.52
85 86 9.369904 CACCTCACCCAAATAAAAATGATAAAG 57.630 33.333 0.00 0.00 0.00 1.85
86 87 8.875168 ACACCTCACCCAAATAAAAATGATAAA 58.125 29.630 0.00 0.00 0.00 1.40
87 88 8.429237 ACACCTCACCCAAATAAAAATGATAA 57.571 30.769 0.00 0.00 0.00 1.75
88 89 9.535170 TTACACCTCACCCAAATAAAAATGATA 57.465 29.630 0.00 0.00 0.00 2.15
89 90 6.933514 ACACCTCACCCAAATAAAAATGAT 57.066 33.333 0.00 0.00 0.00 2.45
90 91 7.726291 TCTTACACCTCACCCAAATAAAAATGA 59.274 33.333 0.00 0.00 0.00 2.57
91 92 7.891561 TCTTACACCTCACCCAAATAAAAATG 58.108 34.615 0.00 0.00 0.00 2.32
92 93 8.485578 TTCTTACACCTCACCCAAATAAAAAT 57.514 30.769 0.00 0.00 0.00 1.82
93 94 7.899648 TTCTTACACCTCACCCAAATAAAAA 57.100 32.000 0.00 0.00 0.00 1.94
94 95 7.899648 TTTCTTACACCTCACCCAAATAAAA 57.100 32.000 0.00 0.00 0.00 1.52
95 96 7.507616 ACATTTCTTACACCTCACCCAAATAAA 59.492 33.333 0.00 0.00 0.00 1.40
96 97 7.007723 ACATTTCTTACACCTCACCCAAATAA 58.992 34.615 0.00 0.00 0.00 1.40
97 98 6.432783 CACATTTCTTACACCTCACCCAAATA 59.567 38.462 0.00 0.00 0.00 1.40
98 99 5.243730 CACATTTCTTACACCTCACCCAAAT 59.756 40.000 0.00 0.00 0.00 2.32
99 100 4.582656 CACATTTCTTACACCTCACCCAAA 59.417 41.667 0.00 0.00 0.00 3.28
100 101 4.141287 CACATTTCTTACACCTCACCCAA 58.859 43.478 0.00 0.00 0.00 4.12
101 102 3.392947 TCACATTTCTTACACCTCACCCA 59.607 43.478 0.00 0.00 0.00 4.51
102 103 4.003648 CTCACATTTCTTACACCTCACCC 58.996 47.826 0.00 0.00 0.00 4.61
103 104 4.894784 TCTCACATTTCTTACACCTCACC 58.105 43.478 0.00 0.00 0.00 4.02
104 105 5.992217 AGTTCTCACATTTCTTACACCTCAC 59.008 40.000 0.00 0.00 0.00 3.51
105 106 5.991606 CAGTTCTCACATTTCTTACACCTCA 59.008 40.000 0.00 0.00 0.00 3.86
106 107 6.223852 TCAGTTCTCACATTTCTTACACCTC 58.776 40.000 0.00 0.00 0.00 3.85
107 108 6.174720 TCAGTTCTCACATTTCTTACACCT 57.825 37.500 0.00 0.00 0.00 4.00
108 109 6.564125 CGTTCAGTTCTCACATTTCTTACACC 60.564 42.308 0.00 0.00 0.00 4.16
109 110 6.018994 ACGTTCAGTTCTCACATTTCTTACAC 60.019 38.462 0.00 0.00 0.00 2.90
110 111 6.046593 ACGTTCAGTTCTCACATTTCTTACA 58.953 36.000 0.00 0.00 0.00 2.41
111 112 6.526566 ACGTTCAGTTCTCACATTTCTTAC 57.473 37.500 0.00 0.00 0.00 2.34
112 113 6.018262 CCAACGTTCAGTTCTCACATTTCTTA 60.018 38.462 0.00 0.00 42.02 2.10
113 114 5.220854 CCAACGTTCAGTTCTCACATTTCTT 60.221 40.000 0.00 0.00 42.02 2.52
114 115 4.273480 CCAACGTTCAGTTCTCACATTTCT 59.727 41.667 0.00 0.00 42.02 2.52
115 116 4.527564 CCAACGTTCAGTTCTCACATTTC 58.472 43.478 0.00 0.00 42.02 2.17
116 117 3.243068 GCCAACGTTCAGTTCTCACATTT 60.243 43.478 0.00 0.00 42.02 2.32
117 118 2.290641 GCCAACGTTCAGTTCTCACATT 59.709 45.455 0.00 0.00 42.02 2.71
118 119 1.873591 GCCAACGTTCAGTTCTCACAT 59.126 47.619 0.00 0.00 42.02 3.21
119 120 1.134521 AGCCAACGTTCAGTTCTCACA 60.135 47.619 0.00 0.00 42.02 3.58
120 121 1.583054 AGCCAACGTTCAGTTCTCAC 58.417 50.000 0.00 0.00 42.02 3.51
121 122 2.325583 AAGCCAACGTTCAGTTCTCA 57.674 45.000 0.00 0.00 42.02 3.27
122 123 3.184581 CACTAAGCCAACGTTCAGTTCTC 59.815 47.826 0.00 0.00 42.02 2.87
123 124 3.131396 CACTAAGCCAACGTTCAGTTCT 58.869 45.455 0.00 0.00 42.02 3.01
124 125 2.223377 CCACTAAGCCAACGTTCAGTTC 59.777 50.000 0.00 0.00 42.02 3.01
125 126 2.218603 CCACTAAGCCAACGTTCAGTT 58.781 47.619 0.00 0.00 45.45 3.16
126 127 1.878953 CCACTAAGCCAACGTTCAGT 58.121 50.000 0.00 0.00 0.00 3.41
127 128 0.517316 GCCACTAAGCCAACGTTCAG 59.483 55.000 0.00 0.00 0.00 3.02
128 129 0.179043 TGCCACTAAGCCAACGTTCA 60.179 50.000 0.00 0.00 0.00 3.18
129 130 0.517316 CTGCCACTAAGCCAACGTTC 59.483 55.000 0.00 0.00 0.00 3.95
130 131 0.889186 CCTGCCACTAAGCCAACGTT 60.889 55.000 0.00 0.00 0.00 3.99
131 132 1.302511 CCTGCCACTAAGCCAACGT 60.303 57.895 0.00 0.00 0.00 3.99
132 133 0.605319 TTCCTGCCACTAAGCCAACG 60.605 55.000 0.00 0.00 0.00 4.10
133 134 1.839424 ATTCCTGCCACTAAGCCAAC 58.161 50.000 0.00 0.00 0.00 3.77
134 135 2.446435 GAATTCCTGCCACTAAGCCAA 58.554 47.619 0.00 0.00 0.00 4.52
135 136 1.340991 GGAATTCCTGCCACTAAGCCA 60.341 52.381 17.73 0.00 0.00 4.75
136 137 1.393603 GGAATTCCTGCCACTAAGCC 58.606 55.000 17.73 0.00 0.00 4.35
137 138 1.017387 CGGAATTCCTGCCACTAAGC 58.983 55.000 22.05 0.00 0.00 3.09
138 139 1.668419 CCGGAATTCCTGCCACTAAG 58.332 55.000 22.05 3.27 0.00 2.18
139 140 0.393808 GCCGGAATTCCTGCCACTAA 60.394 55.000 25.81 0.00 39.91 2.24
140 141 1.223487 GCCGGAATTCCTGCCACTA 59.777 57.895 25.81 0.00 39.91 2.74
141 142 2.044946 GCCGGAATTCCTGCCACT 60.045 61.111 25.81 0.00 39.91 4.00
145 146 3.202706 GACGGCCGGAATTCCTGC 61.203 66.667 31.76 27.56 44.27 4.85
146 147 2.845752 TTCGACGGCCGGAATTCCTG 62.846 60.000 31.76 16.73 39.14 3.86
147 148 2.652095 TTCGACGGCCGGAATTCCT 61.652 57.895 31.76 5.85 39.14 3.36
148 149 2.125431 TTCGACGGCCGGAATTCC 60.125 61.111 31.76 15.01 39.14 3.01
149 150 2.458610 GGTTCGACGGCCGGAATTC 61.459 63.158 31.76 16.98 39.14 2.17
150 151 2.435410 GGTTCGACGGCCGGAATT 60.435 61.111 31.76 8.20 39.14 2.17
151 152 4.462280 GGGTTCGACGGCCGGAAT 62.462 66.667 31.76 8.67 39.14 3.01
177 178 4.796495 ATTCGAAGGCGGGTGGGC 62.796 66.667 3.35 0.00 42.69 5.36
178 179 2.045340 AATTCGAAGGCGGGTGGG 60.045 61.111 3.35 0.00 38.28 4.61
179 180 1.078426 AGAATTCGAAGGCGGGTGG 60.078 57.895 3.35 0.00 38.28 4.61
180 181 0.391130 TGAGAATTCGAAGGCGGGTG 60.391 55.000 3.35 0.00 38.28 4.61
181 182 0.391263 GTGAGAATTCGAAGGCGGGT 60.391 55.000 3.35 0.00 38.28 5.28
182 183 1.421410 CGTGAGAATTCGAAGGCGGG 61.421 60.000 3.35 0.00 38.28 6.13
183 184 0.736325 ACGTGAGAATTCGAAGGCGG 60.736 55.000 3.35 0.00 38.28 6.13
184 185 1.068474 AACGTGAGAATTCGAAGGCG 58.932 50.000 3.35 4.37 39.35 5.52
185 186 1.128692 CCAACGTGAGAATTCGAAGGC 59.871 52.381 3.35 0.00 0.00 4.35
186 187 2.157668 CACCAACGTGAGAATTCGAAGG 59.842 50.000 3.35 0.00 43.14 3.46
187 188 2.411547 GCACCAACGTGAGAATTCGAAG 60.412 50.000 3.35 0.00 43.14 3.79
188 189 1.529438 GCACCAACGTGAGAATTCGAA 59.471 47.619 0.00 0.00 43.14 3.71
189 190 1.144969 GCACCAACGTGAGAATTCGA 58.855 50.000 0.00 0.00 43.14 3.71
190 191 1.136252 CAGCACCAACGTGAGAATTCG 60.136 52.381 0.00 0.00 43.14 3.34
191 192 1.197721 CCAGCACCAACGTGAGAATTC 59.802 52.381 0.00 0.00 43.14 2.17
192 193 1.202758 TCCAGCACCAACGTGAGAATT 60.203 47.619 0.00 0.00 43.14 2.17
193 194 0.396435 TCCAGCACCAACGTGAGAAT 59.604 50.000 0.00 0.00 43.14 2.40
194 195 0.179234 TTCCAGCACCAACGTGAGAA 59.821 50.000 0.00 0.00 43.14 2.87
195 196 0.531974 GTTCCAGCACCAACGTGAGA 60.532 55.000 0.00 0.00 43.14 3.27
196 197 0.532862 AGTTCCAGCACCAACGTGAG 60.533 55.000 0.00 0.00 43.14 3.51
197 198 0.813610 CAGTTCCAGCACCAACGTGA 60.814 55.000 0.00 0.00 43.14 4.35
198 199 1.648720 CAGTTCCAGCACCAACGTG 59.351 57.895 0.00 0.00 43.35 4.49
199 200 1.525995 CCAGTTCCAGCACCAACGT 60.526 57.895 0.00 0.00 0.00 3.99
200 201 1.227823 TCCAGTTCCAGCACCAACG 60.228 57.895 0.00 0.00 0.00 4.10
201 202 1.172812 GGTCCAGTTCCAGCACCAAC 61.173 60.000 0.00 0.00 0.00 3.77
202 203 1.150536 GGTCCAGTTCCAGCACCAA 59.849 57.895 0.00 0.00 0.00 3.67
203 204 1.426251 ATGGTCCAGTTCCAGCACCA 61.426 55.000 0.00 0.00 41.36 4.17
204 205 0.618458 TATGGTCCAGTTCCAGCACC 59.382 55.000 0.00 0.00 38.42 5.01
205 206 2.717639 ATATGGTCCAGTTCCAGCAC 57.282 50.000 0.00 0.00 38.42 4.40
206 207 3.266772 AGAAATATGGTCCAGTTCCAGCA 59.733 43.478 0.00 0.00 38.42 4.41
207 208 3.629398 CAGAAATATGGTCCAGTTCCAGC 59.371 47.826 0.00 0.00 38.42 4.85
208 209 3.629398 GCAGAAATATGGTCCAGTTCCAG 59.371 47.826 0.00 0.00 38.42 3.86
209 210 3.010027 TGCAGAAATATGGTCCAGTTCCA 59.990 43.478 0.00 0.00 39.41 3.53
210 211 3.378427 GTGCAGAAATATGGTCCAGTTCC 59.622 47.826 0.00 0.00 0.00 3.62
211 212 4.265073 AGTGCAGAAATATGGTCCAGTTC 58.735 43.478 0.00 1.29 0.00 3.01
212 213 4.307032 AGTGCAGAAATATGGTCCAGTT 57.693 40.909 0.00 0.00 0.00 3.16
213 214 4.307032 AAGTGCAGAAATATGGTCCAGT 57.693 40.909 0.00 0.00 0.00 4.00
214 215 5.404946 CAAAAGTGCAGAAATATGGTCCAG 58.595 41.667 0.00 0.00 0.00 3.86
215 216 4.220382 CCAAAAGTGCAGAAATATGGTCCA 59.780 41.667 0.00 0.00 0.00 4.02
216 217 4.220602 ACCAAAAGTGCAGAAATATGGTCC 59.779 41.667 0.00 0.00 35.04 4.46
217 218 5.163513 CACCAAAAGTGCAGAAATATGGTC 58.836 41.667 6.00 0.00 40.28 4.02
218 219 5.138125 CACCAAAAGTGCAGAAATATGGT 57.862 39.130 0.00 0.00 40.28 3.55
237 238 4.572389 CAGAGATGTATTGCTGGTTACACC 59.428 45.833 0.00 0.00 39.22 4.16
238 239 4.572389 CCAGAGATGTATTGCTGGTTACAC 59.428 45.833 0.00 0.00 42.26 2.90
239 240 4.469586 TCCAGAGATGTATTGCTGGTTACA 59.530 41.667 0.00 0.00 46.21 2.41
240 241 5.023533 TCCAGAGATGTATTGCTGGTTAC 57.976 43.478 0.00 0.00 46.21 2.50
241 242 4.443457 GCTCCAGAGATGTATTGCTGGTTA 60.443 45.833 0.00 0.00 46.21 2.85
242 243 3.683847 GCTCCAGAGATGTATTGCTGGTT 60.684 47.826 0.00 0.00 46.21 3.67
243 244 2.158842 GCTCCAGAGATGTATTGCTGGT 60.159 50.000 0.00 0.00 46.21 4.00
245 246 2.133553 CGCTCCAGAGATGTATTGCTG 58.866 52.381 0.00 0.00 0.00 4.41
246 247 1.069823 CCGCTCCAGAGATGTATTGCT 59.930 52.381 0.00 0.00 0.00 3.91
247 248 1.202580 ACCGCTCCAGAGATGTATTGC 60.203 52.381 0.00 0.00 0.00 3.56
248 249 2.898729 ACCGCTCCAGAGATGTATTG 57.101 50.000 0.00 0.00 0.00 1.90
249 250 2.766263 TGAACCGCTCCAGAGATGTATT 59.234 45.455 0.00 0.00 0.00 1.89
250 251 2.101582 GTGAACCGCTCCAGAGATGTAT 59.898 50.000 0.00 0.00 0.00 2.29
251 252 1.476891 GTGAACCGCTCCAGAGATGTA 59.523 52.381 0.00 0.00 0.00 2.29
252 253 0.247736 GTGAACCGCTCCAGAGATGT 59.752 55.000 0.00 0.00 0.00 3.06
253 254 0.247460 TGTGAACCGCTCCAGAGATG 59.753 55.000 0.00 0.00 0.00 2.90
254 255 1.198713 ATGTGAACCGCTCCAGAGAT 58.801 50.000 0.00 0.00 0.00 2.75
255 256 0.976641 AATGTGAACCGCTCCAGAGA 59.023 50.000 0.00 0.00 0.00 3.10
256 257 1.466167 CAAATGTGAACCGCTCCAGAG 59.534 52.381 0.00 0.00 0.00 3.35
257 258 1.522668 CAAATGTGAACCGCTCCAGA 58.477 50.000 0.00 0.00 0.00 3.86
258 259 0.109597 GCAAATGTGAACCGCTCCAG 60.110 55.000 0.00 0.00 0.00 3.86
259 260 0.821301 TGCAAATGTGAACCGCTCCA 60.821 50.000 0.00 0.00 0.00 3.86
260 261 0.109597 CTGCAAATGTGAACCGCTCC 60.110 55.000 0.00 0.00 0.00 4.70
261 262 0.874390 TCTGCAAATGTGAACCGCTC 59.126 50.000 0.00 0.00 0.00 5.03
262 263 1.470098 GATCTGCAAATGTGAACCGCT 59.530 47.619 0.00 0.00 0.00 5.52
263 264 1.199789 TGATCTGCAAATGTGAACCGC 59.800 47.619 0.00 0.00 0.00 5.68
264 265 2.226200 TGTGATCTGCAAATGTGAACCG 59.774 45.455 0.00 0.00 0.00 4.44
265 266 3.254166 AGTGTGATCTGCAAATGTGAACC 59.746 43.478 0.00 0.00 0.00 3.62
266 267 4.494350 AGTGTGATCTGCAAATGTGAAC 57.506 40.909 0.00 0.00 0.00 3.18
267 268 4.579753 TCAAGTGTGATCTGCAAATGTGAA 59.420 37.500 0.00 0.00 0.00 3.18
268 269 4.136051 TCAAGTGTGATCTGCAAATGTGA 58.864 39.130 0.00 0.00 0.00 3.58
430 431 4.065281 GCGTCCACGGCCACTACT 62.065 66.667 2.24 0.00 40.23 2.57
506 527 2.546789 ACCACTTATAATTAAGCCGCGC 59.453 45.455 0.00 0.00 38.74 6.86
518 539 1.917273 GCGACTTGCGACCACTTATA 58.083 50.000 0.00 0.00 44.57 0.98
519 540 2.750815 GCGACTTGCGACCACTTAT 58.249 52.632 0.00 0.00 44.57 1.73
587 608 2.936498 CCAGTAGTTTATGACTTGGGCG 59.064 50.000 0.00 0.00 39.86 6.13
588 609 2.683362 GCCAGTAGTTTATGACTTGGGC 59.317 50.000 0.00 0.00 36.94 5.36
605 626 4.415332 CGCTGCTTGCCTTGCCAG 62.415 66.667 0.00 0.00 38.78 4.85
608 629 4.773117 GAGCGCTGCTTGCCTTGC 62.773 66.667 18.48 0.00 39.88 4.01
609 630 4.456253 CGAGCGCTGCTTGCCTTG 62.456 66.667 18.48 0.00 39.88 3.61
610 631 4.996434 ACGAGCGCTGCTTGCCTT 62.996 61.111 18.48 0.00 43.36 4.35
619 640 1.140589 CCAGATTCAGACGAGCGCT 59.859 57.895 11.27 11.27 0.00 5.92
621 642 1.485397 CATCCAGATTCAGACGAGCG 58.515 55.000 0.00 0.00 0.00 5.03
647 676 0.250338 AAAGAAGACCGTGGGTGAGC 60.250 55.000 0.00 0.00 35.25 4.26
648 677 1.344763 AGAAAGAAGACCGTGGGTGAG 59.655 52.381 0.00 0.00 35.25 3.51
651 680 0.685660 GGAGAAAGAAGACCGTGGGT 59.314 55.000 0.00 0.00 39.44 4.51
652 681 0.977395 AGGAGAAAGAAGACCGTGGG 59.023 55.000 0.00 0.00 0.00 4.61
653 682 1.402984 CGAGGAGAAAGAAGACCGTGG 60.403 57.143 0.00 0.00 0.00 4.94
654 683 1.983972 CGAGGAGAAAGAAGACCGTG 58.016 55.000 0.00 0.00 0.00 4.94
655 684 0.244178 GCGAGGAGAAAGAAGACCGT 59.756 55.000 0.00 0.00 0.00 4.83
656 685 0.528470 AGCGAGGAGAAAGAAGACCG 59.472 55.000 0.00 0.00 0.00 4.79
657 686 1.273886 ACAGCGAGGAGAAAGAAGACC 59.726 52.381 0.00 0.00 0.00 3.85
658 687 2.734276 ACAGCGAGGAGAAAGAAGAC 57.266 50.000 0.00 0.00 0.00 3.01
659 688 3.367498 GCTAACAGCGAGGAGAAAGAAGA 60.367 47.826 0.00 0.00 0.00 2.87
660 689 2.926838 GCTAACAGCGAGGAGAAAGAAG 59.073 50.000 0.00 0.00 0.00 2.85
661 690 2.960819 GCTAACAGCGAGGAGAAAGAA 58.039 47.619 0.00 0.00 0.00 2.52
662 691 2.656560 GCTAACAGCGAGGAGAAAGA 57.343 50.000 0.00 0.00 0.00 2.52
695 744 5.823209 TTGATAATGCATCCAGTTGTGAG 57.177 39.130 0.00 0.00 32.09 3.51
697 746 6.822073 CATTTGATAATGCATCCAGTTGTG 57.178 37.500 0.00 0.00 35.15 3.33
755 804 2.034558 GCTCCTCATCTCTCTCTTTCGG 59.965 54.545 0.00 0.00 0.00 4.30
757 806 3.491447 GCTGCTCCTCATCTCTCTCTTTC 60.491 52.174 0.00 0.00 0.00 2.62
763 812 3.573538 TGATTAGCTGCTCCTCATCTCTC 59.426 47.826 4.91 0.00 0.00 3.20
765 814 3.321682 ACTGATTAGCTGCTCCTCATCTC 59.678 47.826 4.91 0.00 0.00 2.75
766 815 3.307506 ACTGATTAGCTGCTCCTCATCT 58.692 45.455 4.91 0.00 0.00 2.90
767 816 3.749665 ACTGATTAGCTGCTCCTCATC 57.250 47.619 4.91 4.85 0.00 2.92
773 822 5.964958 AGATCTCTACTGATTAGCTGCTC 57.035 43.478 4.91 0.00 0.00 4.26
780 829 7.881775 TGTAGCACAAGATCTCTACTGATTA 57.118 36.000 16.20 0.00 34.19 1.75
781 830 6.782082 TGTAGCACAAGATCTCTACTGATT 57.218 37.500 16.20 0.00 34.19 2.57
782 831 6.548993 TGATGTAGCACAAGATCTCTACTGAT 59.451 38.462 16.20 6.44 34.19 2.90
784 833 5.976534 GTGATGTAGCACAAGATCTCTACTG 59.023 44.000 16.20 5.89 38.63 2.74
785 834 5.890985 AGTGATGTAGCACAAGATCTCTACT 59.109 40.000 16.20 6.76 41.19 2.57
786 835 6.142818 AGTGATGTAGCACAAGATCTCTAC 57.857 41.667 10.84 10.84 41.19 2.59
787 836 6.782082 AAGTGATGTAGCACAAGATCTCTA 57.218 37.500 0.00 0.00 41.19 2.43
788 837 5.674052 AAGTGATGTAGCACAAGATCTCT 57.326 39.130 0.00 0.00 41.19 3.10
789 838 5.005203 CGAAAGTGATGTAGCACAAGATCTC 59.995 44.000 0.00 0.00 41.19 2.75
790 839 4.867047 CGAAAGTGATGTAGCACAAGATCT 59.133 41.667 2.93 0.00 41.19 2.75
829 878 1.662629 CTCTCGCGATTGCTGATGTTT 59.337 47.619 10.36 0.00 39.65 2.83
830 879 1.284657 CTCTCGCGATTGCTGATGTT 58.715 50.000 10.36 0.00 39.65 2.71
920 969 2.448582 AAGGCACCAAGACACCGGA 61.449 57.895 9.46 0.00 0.00 5.14
921 970 2.113139 AAGGCACCAAGACACCGG 59.887 61.111 0.00 0.00 0.00 5.28
922 971 2.260869 CCAAGGCACCAAGACACCG 61.261 63.158 0.00 0.00 0.00 4.94
923 972 1.903404 CCCAAGGCACCAAGACACC 60.903 63.158 0.00 0.00 0.00 4.16
924 973 0.755327 AACCCAAGGCACCAAGACAC 60.755 55.000 0.00 0.00 0.00 3.67
925 974 0.754957 CAACCCAAGGCACCAAGACA 60.755 55.000 0.00 0.00 0.00 3.41
926 975 0.755327 ACAACCCAAGGCACCAAGAC 60.755 55.000 0.00 0.00 0.00 3.01
927 976 0.847373 TACAACCCAAGGCACCAAGA 59.153 50.000 0.00 0.00 0.00 3.02
935 984 1.427753 ACCTTCCCTTACAACCCAAGG 59.572 52.381 0.00 0.00 41.97 3.61
945 1002 1.913419 GGGTCATGTCACCTTCCCTTA 59.087 52.381 3.76 0.00 36.57 2.69
1099 1161 2.588596 CGACACCACTGCACTGCA 60.589 61.111 3.11 3.11 36.92 4.41
1100 1162 4.017877 GCGACACCACTGCACTGC 62.018 66.667 0.00 0.00 0.00 4.40
1101 1163 2.280389 AGCGACACCACTGCACTG 60.280 61.111 0.00 0.00 0.00 3.66
1102 1164 2.280389 CAGCGACACCACTGCACT 60.280 61.111 0.00 0.00 0.00 4.40
1162 1232 1.676529 CGGAGAGGATAAACGAGCTGA 59.323 52.381 0.00 0.00 0.00 4.26
1217 1287 2.364842 AGGGCAGAGCGTCATCCT 60.365 61.111 0.00 0.00 0.00 3.24
1346 1416 4.175516 GCAGCGGAATGAAATGAAATGAA 58.824 39.130 0.00 0.00 0.00 2.57
1347 1417 3.429272 GGCAGCGGAATGAAATGAAATGA 60.429 43.478 0.00 0.00 0.00 2.57
1348 1418 2.861935 GGCAGCGGAATGAAATGAAATG 59.138 45.455 0.00 0.00 0.00 2.32
1349 1419 2.159057 GGGCAGCGGAATGAAATGAAAT 60.159 45.455 0.00 0.00 0.00 2.17
1350 1420 1.204467 GGGCAGCGGAATGAAATGAAA 59.796 47.619 0.00 0.00 0.00 2.69
1387 1464 5.447818 GCAAAGATGGAAGGTTCTAATGACG 60.448 44.000 0.00 0.00 0.00 4.35
1388 1465 5.649831 AGCAAAGATGGAAGGTTCTAATGAC 59.350 40.000 0.00 0.00 0.00 3.06
1389 1466 5.819991 AGCAAAGATGGAAGGTTCTAATGA 58.180 37.500 0.00 0.00 0.00 2.57
1390 1467 5.067023 GGAGCAAAGATGGAAGGTTCTAATG 59.933 44.000 0.00 0.00 0.00 1.90
1404 1481 0.105039 GATCGACCGGGAGCAAAGAT 59.895 55.000 6.32 0.00 0.00 2.40
1508 1585 3.786586 GAGGACGACGACGACGCT 61.787 66.667 18.98 9.35 43.96 5.07
1544 1621 2.096442 CGTCATCTTCGCAGCAGCA 61.096 57.895 0.82 0.00 42.27 4.41
1638 1718 1.331756 AGATGAATCAATGGAACGCGC 59.668 47.619 5.73 0.00 0.00 6.86
1641 1721 7.307493 TCTGTAAAGATGAATCAATGGAACG 57.693 36.000 0.00 0.00 0.00 3.95
1642 1722 9.727627 GAATCTGTAAAGATGAATCAATGGAAC 57.272 33.333 0.00 0.00 0.00 3.62
1651 1731 6.832384 AGCCACATGAATCTGTAAAGATGAAT 59.168 34.615 0.00 0.00 0.00 2.57
1658 1738 4.299586 TCCAGCCACATGAATCTGTAAA 57.700 40.909 0.00 0.00 0.00 2.01
1883 1963 2.477357 CGAGACGACGATGGTGTTGTAT 60.477 50.000 0.00 0.00 36.60 2.29
1946 2029 3.188048 CCTGACTGAATCACAAGTGAAGC 59.812 47.826 7.02 3.21 43.58 3.86
1977 2060 3.370840 TTCCCCATCAATCTCAACCAG 57.629 47.619 0.00 0.00 0.00 4.00
1979 2062 4.280819 TCATTTCCCCATCAATCTCAACC 58.719 43.478 0.00 0.00 0.00 3.77
2199 2287 1.081376 GCTGCTGTCGTCGTACTGT 60.081 57.895 0.00 0.00 0.00 3.55
2469 2557 1.905894 AGCCTGGTCTTCCTCTTCTTC 59.094 52.381 0.00 0.00 34.23 2.87
2561 2649 1.529010 CTGAGCCCTTTGGTGTGCA 60.529 57.895 0.00 0.00 0.00 4.57
2640 2728 2.034532 TCCACCTCGCTCACGGTA 59.965 61.111 0.00 0.00 40.63 4.02
2643 2731 4.803426 GCCTCCACCTCGCTCACG 62.803 72.222 0.00 0.00 42.01 4.35
2664 2752 1.442526 CCATGCGTGCCAGGATCTTC 61.443 60.000 0.00 0.00 0.00 2.87
2736 2824 0.911769 CCTGCTGGATGAAGGTGGTA 59.088 55.000 2.92 0.00 36.69 3.25
3261 3349 1.278127 GCCCACAGCCAGAAGTAGTAA 59.722 52.381 0.00 0.00 34.35 2.24
3297 3385 0.537188 GCAGGTAGAGCAGCAGGTTA 59.463 55.000 0.00 0.00 0.00 2.85
3342 3430 2.932234 CGAGTGGCGGAGGACTTGT 61.932 63.158 0.00 0.00 36.03 3.16
3455 3549 7.172342 AGAGTTATATCCAGCGAGACTTCTAT 58.828 38.462 0.00 0.00 0.00 1.98
3468 3562 8.673711 GCATGTACAAAACAAGAGTTATATCCA 58.326 33.333 0.00 0.00 42.70 3.41
3494 3588 3.380479 TCGTTAACAACACCCTCTGAG 57.620 47.619 6.39 0.00 0.00 3.35
3506 3600 4.020928 TCTCCCAGCTTGTTATCGTTAACA 60.021 41.667 13.71 13.71 44.57 2.41
3514 3608 6.302269 CCTTTCATATCTCCCAGCTTGTTAT 58.698 40.000 0.00 0.00 0.00 1.89
3533 3627 9.855021 TGCTAATATAAAGAAAAACTGCCTTTC 57.145 29.630 0.00 0.00 32.92 2.62
3567 6195 8.020819 GGACAACGAACTGAAAATTATTCATCA 58.979 33.333 0.00 0.00 0.00 3.07
3587 6215 8.522830 TGAAAATTCATTCATCCTAAGGACAAC 58.477 33.333 0.00 0.00 34.50 3.32
3598 6226 8.919661 GGACAAAGAACTGAAAATTCATTCATC 58.080 33.333 14.74 5.79 38.55 2.92
3663 6293 3.244976 CAAGCAAGAAAACCTTATGCGG 58.755 45.455 0.00 0.00 32.86 5.69
3693 6323 9.490379 AGAAAACGAGTTAGACACAAGATATTT 57.510 29.630 0.00 0.00 0.00 1.40
3694 6324 8.926710 CAGAAAACGAGTTAGACACAAGATATT 58.073 33.333 0.00 0.00 0.00 1.28
3695 6325 8.304596 TCAGAAAACGAGTTAGACACAAGATAT 58.695 33.333 0.00 0.00 0.00 1.63
3696 6326 7.654568 TCAGAAAACGAGTTAGACACAAGATA 58.345 34.615 0.00 0.00 0.00 1.98
3697 6327 6.513180 TCAGAAAACGAGTTAGACACAAGAT 58.487 36.000 0.00 0.00 0.00 2.40
3698 6328 5.898174 TCAGAAAACGAGTTAGACACAAGA 58.102 37.500 0.00 0.00 0.00 3.02
3699 6329 6.583912 TTCAGAAAACGAGTTAGACACAAG 57.416 37.500 0.00 0.00 0.00 3.16
3700 6330 6.971527 TTTCAGAAAACGAGTTAGACACAA 57.028 33.333 0.00 0.00 0.00 3.33
3701 6331 6.456449 GCTTTTCAGAAAACGAGTTAGACACA 60.456 38.462 4.06 0.00 0.00 3.72
3702 6332 5.902432 GCTTTTCAGAAAACGAGTTAGACAC 59.098 40.000 4.06 0.00 0.00 3.67
3703 6333 5.583061 TGCTTTTCAGAAAACGAGTTAGACA 59.417 36.000 4.06 0.00 0.00 3.41
3704 6334 6.044512 TGCTTTTCAGAAAACGAGTTAGAC 57.955 37.500 4.06 0.00 0.00 2.59
3705 6335 6.861065 ATGCTTTTCAGAAAACGAGTTAGA 57.139 33.333 4.06 0.00 0.00 2.10
3706 6336 9.612620 AATTATGCTTTTCAGAAAACGAGTTAG 57.387 29.630 4.06 0.00 28.74 2.34
3707 6337 9.959749 AAATTATGCTTTTCAGAAAACGAGTTA 57.040 25.926 4.06 0.00 28.74 2.24
3708 6338 8.871686 AAATTATGCTTTTCAGAAAACGAGTT 57.128 26.923 4.06 0.00 28.74 3.01
3709 6339 8.134895 TGAAATTATGCTTTTCAGAAAACGAGT 58.865 29.630 4.06 0.00 37.97 4.18
3710 6340 8.506140 TGAAATTATGCTTTTCAGAAAACGAG 57.494 30.769 4.06 0.00 37.97 4.18
3711 6341 8.864069 TTGAAATTATGCTTTTCAGAAAACGA 57.136 26.923 4.06 0.00 42.31 3.85
3747 6996 2.875933 TGCCATAAAACTAGCATACCGC 59.124 45.455 0.00 0.00 42.91 5.68
3748 6997 4.024048 CCTTGCCATAAAACTAGCATACCG 60.024 45.833 0.00 0.00 34.72 4.02
3752 7001 3.633986 GCTCCTTGCCATAAAACTAGCAT 59.366 43.478 0.00 0.00 34.72 3.79
3754 7003 3.282885 AGCTCCTTGCCATAAAACTAGC 58.717 45.455 0.00 0.00 44.23 3.42
3767 7017 3.569701 TGTTTGCCTTTAGAAGCTCCTTG 59.430 43.478 0.00 0.00 0.00 3.61
3768 7018 3.832527 TGTTTGCCTTTAGAAGCTCCTT 58.167 40.909 0.00 0.00 0.00 3.36
3769 7019 3.508845 TGTTTGCCTTTAGAAGCTCCT 57.491 42.857 0.00 0.00 0.00 3.69
3770 7020 6.268566 CAATATGTTTGCCTTTAGAAGCTCC 58.731 40.000 0.00 0.00 0.00 4.70
3771 7021 6.127619 ACCAATATGTTTGCCTTTAGAAGCTC 60.128 38.462 0.00 0.00 0.00 4.09
3772 7022 5.716703 ACCAATATGTTTGCCTTTAGAAGCT 59.283 36.000 0.00 0.00 0.00 3.74
3898 7148 3.618750 AAAGACGACGCCCGGGAA 61.619 61.111 29.31 0.00 43.93 3.97
3905 7155 3.479269 CTCGGGCAAAGACGACGC 61.479 66.667 0.00 0.00 35.04 5.19
3906 7156 2.049433 ACTCGGGCAAAGACGACG 60.049 61.111 0.00 0.00 35.04 5.12
3910 7160 0.037232 AGTAGCACTCGGGCAAAGAC 60.037 55.000 0.00 0.00 35.83 3.01
3912 7162 2.755929 GAGTAGCACTCGGGCAAAG 58.244 57.895 0.00 0.00 35.28 2.77
3934 7184 2.401766 GGCACATGAGGAACTGCGG 61.402 63.158 0.00 0.00 41.55 5.69
3965 7215 2.935481 CTTGGGAGGGGAGCACCA 60.935 66.667 1.58 0.00 42.91 4.17
3966 7216 2.936032 ACTTGGGAGGGGAGCACC 60.936 66.667 0.00 0.00 39.11 5.01
3967 7217 2.352805 CACTTGGGAGGGGAGCAC 59.647 66.667 0.00 0.00 0.00 4.40
3968 7218 2.121963 ACACTTGGGAGGGGAGCA 60.122 61.111 0.00 0.00 0.00 4.26
3969 7219 2.671682 GACACTTGGGAGGGGAGC 59.328 66.667 0.00 0.00 0.00 4.70
3970 7220 1.229658 AGGACACTTGGGAGGGGAG 60.230 63.158 0.00 0.00 0.00 4.30
3998 7248 2.674380 GCTCCTGGCCACCAACTG 60.674 66.667 0.00 0.00 30.80 3.16
4027 7277 3.390175 AGCACCACTCCTAGAGTATGT 57.610 47.619 0.00 0.00 41.37 2.29
4038 7288 4.065088 TGTATTCAACTCAAGCACCACTC 58.935 43.478 0.00 0.00 0.00 3.51
4046 7296 6.671190 TGAAGCAACATGTATTCAACTCAAG 58.329 36.000 15.05 0.00 0.00 3.02
4063 7313 5.455183 CCACTATGAGGTATCCATGAAGCAA 60.455 44.000 0.00 0.00 0.00 3.91
4082 7332 2.113433 GCGGACTCGAGCTCCACTA 61.113 63.158 24.42 0.00 39.00 2.74
4083 7333 3.444805 GCGGACTCGAGCTCCACT 61.445 66.667 24.42 3.21 39.00 4.00
4092 7342 4.778415 CTCGGTGGTGCGGACTCG 62.778 72.222 7.11 9.14 39.81 4.18
4097 7347 3.723235 CTGGATCTCGGTGGTGCGG 62.723 68.421 0.00 0.00 0.00 5.69
4107 7357 4.264460 ACCTTGATATTCGCTGGATCTC 57.736 45.455 0.00 0.00 0.00 2.75
4110 7360 5.808366 TTCTACCTTGATATTCGCTGGAT 57.192 39.130 0.00 0.00 0.00 3.41
4115 7365 5.107453 CGTTCCATTCTACCTTGATATTCGC 60.107 44.000 0.00 0.00 0.00 4.70
4118 7368 6.986817 CAGTCGTTCCATTCTACCTTGATATT 59.013 38.462 0.00 0.00 0.00 1.28
4125 7375 3.195825 CCTTCAGTCGTTCCATTCTACCT 59.804 47.826 0.00 0.00 0.00 3.08
4138 7388 4.065321 AGATTAGGCAATCCTTCAGTCG 57.935 45.455 6.19 0.00 40.66 4.18
4141 7391 5.011943 AGAGCTAGATTAGGCAATCCTTCAG 59.988 44.000 0.00 2.25 40.66 3.02
4143 7393 5.482163 AGAGCTAGATTAGGCAATCCTTC 57.518 43.478 0.00 0.00 40.66 3.46
4158 7408 1.137872 CCAGGTGCCTGTTAGAGCTAG 59.862 57.143 16.15 0.00 42.15 3.42
4183 7433 2.030893 TGAATTCAAACTTGCTCGCTGG 60.031 45.455 5.45 0.00 0.00 4.85
4185 7435 2.351157 GCTGAATTCAAACTTGCTCGCT 60.351 45.455 9.88 0.00 0.00 4.93
4187 7437 3.272439 TGCTGAATTCAAACTTGCTCG 57.728 42.857 9.88 0.00 0.00 5.03
4188 7438 5.050567 CCTTTTGCTGAATTCAAACTTGCTC 60.051 40.000 9.88 0.00 33.66 4.26
4189 7439 4.812626 CCTTTTGCTGAATTCAAACTTGCT 59.187 37.500 9.88 0.00 33.66 3.91
4190 7440 4.553351 GCCTTTTGCTGAATTCAAACTTGC 60.553 41.667 9.88 9.45 33.66 4.01
4191 7441 4.318263 CGCCTTTTGCTGAATTCAAACTTG 60.318 41.667 9.88 0.00 38.05 3.16
4192 7442 3.803778 CGCCTTTTGCTGAATTCAAACTT 59.196 39.130 9.88 0.00 38.05 2.66
4193 7443 3.383761 CGCCTTTTGCTGAATTCAAACT 58.616 40.909 9.88 0.00 38.05 2.66
4197 7447 0.038343 GCCGCCTTTTGCTGAATTCA 60.038 50.000 8.12 8.12 38.05 2.57
4239 7501 7.038154 TCGAAAAATCTTGATTTTCACACCT 57.962 32.000 18.05 5.35 43.61 4.00
4250 7512 5.027737 GTGCGCAATATCGAAAAATCTTGA 58.972 37.500 14.00 0.00 0.00 3.02
4261 7523 1.006086 TCCAACAGTGCGCAATATCG 58.994 50.000 14.00 0.76 0.00 2.92
4265 7527 0.241749 CATGTCCAACAGTGCGCAAT 59.758 50.000 14.00 8.77 0.00 3.56
4271 7533 0.669619 TTGCAGCATGTCCAACAGTG 59.330 50.000 0.00 0.00 39.31 3.66
4293 7555 7.212976 TGTATACAAAACAAAACACCATGCAT 58.787 30.769 2.20 0.00 0.00 3.96
4315 7577 6.642540 CGAGCATTAACTGATGAAGCTATGTA 59.357 38.462 0.00 0.00 0.00 2.29
4330 7592 7.678218 AGCTTCAAATGAAGATCGAGCATTAAC 60.678 37.037 23.66 4.44 46.57 2.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.