Multiple sequence alignment - TraesCS1B01G212200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G212200 chr1B 100.000 4507 0 0 1 4507 385644047 385648553 0.000000e+00 8323.0
1 TraesCS1B01G212200 chr1B 96.943 1014 18 4 3505 4507 220742381 220741370 0.000000e+00 1688.0
2 TraesCS1B01G212200 chr1B 95.459 1013 15 2 3505 4507 385653877 385654868 0.000000e+00 1587.0
3 TraesCS1B01G212200 chr1B 92.285 1011 59 12 3505 4507 244631325 244630326 0.000000e+00 1417.0
4 TraesCS1B01G212200 chr1B 79.021 286 57 3 51 334 29981201 29981485 4.600000e-45 193.0
5 TraesCS1B01G212200 chr1D 91.414 3238 136 65 334 3504 284040183 284043345 0.000000e+00 4309.0
6 TraesCS1B01G212200 chr1A 93.673 1375 80 5 1588 2957 355624876 355626248 0.000000e+00 2050.0
7 TraesCS1B01G212200 chr1A 89.583 720 38 23 893 1587 355624196 355624903 0.000000e+00 880.0
8 TraesCS1B01G212200 chr1A 81.522 276 23 15 499 761 355623867 355624127 7.640000e-48 202.0
9 TraesCS1B01G212200 chr1A 96.078 102 4 0 3403 3504 355626987 355627088 2.790000e-37 167.0
10 TraesCS1B01G212200 chr1A 88.660 97 11 0 2967 3063 355626293 355626389 7.920000e-23 119.0
11 TraesCS1B01G212200 chr1A 93.750 48 1 2 847 892 355624128 355624175 2.250000e-08 71.3
12 TraesCS1B01G212200 chr2A 97.348 1018 17 1 3500 4507 337245218 337246235 0.000000e+00 1722.0
13 TraesCS1B01G212200 chr2A 97.436 1014 16 1 3504 4507 339839114 339838101 0.000000e+00 1720.0
14 TraesCS1B01G212200 chr2A 97.137 1013 19 1 3505 4507 325272240 325273252 0.000000e+00 1701.0
15 TraesCS1B01G212200 chr7B 96.844 1014 20 3 3505 4507 311637316 311636304 0.000000e+00 1685.0
16 TraesCS1B01G212200 chr7B 89.583 48 5 0 3226 3273 202106962 202106915 1.350000e-05 62.1
17 TraesCS1B01G212200 chrUn 96.844 1014 18 5 3505 4507 117474123 117475133 0.000000e+00 1683.0
18 TraesCS1B01G212200 chrUn 96.819 786 14 2 3732 4507 166252353 166251569 0.000000e+00 1303.0
19 TraesCS1B01G212200 chrUn 96.628 682 12 2 3836 4507 440453401 440452721 0.000000e+00 1122.0
20 TraesCS1B01G212200 chrUn 87.417 302 37 1 33 333 319774080 319773779 3.340000e-91 346.0
21 TraesCS1B01G212200 chrUn 86.957 161 20 1 174 333 359916356 359916196 3.580000e-41 180.0
22 TraesCS1B01G212200 chr5B 97.006 1002 28 2 3505 4505 226522100 226521100 0.000000e+00 1683.0
23 TraesCS1B01G212200 chr5B 96.614 1004 32 2 3505 4507 226529761 226528759 0.000000e+00 1664.0
24 TraesCS1B01G212200 chr5B 89.015 264 29 0 72 335 707062714 707062977 1.210000e-85 327.0
25 TraesCS1B01G212200 chr6B 96.356 933 20 5 3504 4425 379700825 379701754 0.000000e+00 1522.0
26 TraesCS1B01G212200 chr3B 88.166 338 37 3 2 337 770978063 770977727 2.530000e-107 399.0
27 TraesCS1B01G212200 chr3B 86.905 336 41 3 4 337 770997747 770997413 1.530000e-99 374.0
28 TraesCS1B01G212200 chr3D 89.496 238 23 2 101 337 577914870 577915106 2.640000e-77 300.0
29 TraesCS1B01G212200 chr5A 82.282 333 49 8 4 332 559452935 559452609 3.430000e-71 279.0
30 TraesCS1B01G212200 chr7A 77.544 285 61 3 51 333 177069412 177069695 7.750000e-38 169.0
31 TraesCS1B01G212200 chr7A 75.789 285 66 3 51 333 668521681 668521398 1.690000e-29 141.0
32 TraesCS1B01G212200 chr7D 89.583 48 5 0 3226 3273 230655771 230655724 1.350000e-05 62.1
33 TraesCS1B01G212200 chr7D 100.000 31 0 0 3226 3256 16694489 16694459 1.750000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G212200 chr1B 385644047 385648553 4506 False 8323.00 8323 100.000000 1 4507 1 chr1B.!!$F2 4506
1 TraesCS1B01G212200 chr1B 220741370 220742381 1011 True 1688.00 1688 96.943000 3505 4507 1 chr1B.!!$R1 1002
2 TraesCS1B01G212200 chr1B 385653877 385654868 991 False 1587.00 1587 95.459000 3505 4507 1 chr1B.!!$F3 1002
3 TraesCS1B01G212200 chr1B 244630326 244631325 999 True 1417.00 1417 92.285000 3505 4507 1 chr1B.!!$R2 1002
4 TraesCS1B01G212200 chr1D 284040183 284043345 3162 False 4309.00 4309 91.414000 334 3504 1 chr1D.!!$F1 3170
5 TraesCS1B01G212200 chr1A 355623867 355627088 3221 False 581.55 2050 90.544333 499 3504 6 chr1A.!!$F1 3005
6 TraesCS1B01G212200 chr2A 337245218 337246235 1017 False 1722.00 1722 97.348000 3500 4507 1 chr2A.!!$F2 1007
7 TraesCS1B01G212200 chr2A 339838101 339839114 1013 True 1720.00 1720 97.436000 3504 4507 1 chr2A.!!$R1 1003
8 TraesCS1B01G212200 chr2A 325272240 325273252 1012 False 1701.00 1701 97.137000 3505 4507 1 chr2A.!!$F1 1002
9 TraesCS1B01G212200 chr7B 311636304 311637316 1012 True 1685.00 1685 96.844000 3505 4507 1 chr7B.!!$R2 1002
10 TraesCS1B01G212200 chrUn 117474123 117475133 1010 False 1683.00 1683 96.844000 3505 4507 1 chrUn.!!$F1 1002
11 TraesCS1B01G212200 chrUn 166251569 166252353 784 True 1303.00 1303 96.819000 3732 4507 1 chrUn.!!$R1 775
12 TraesCS1B01G212200 chrUn 440452721 440453401 680 True 1122.00 1122 96.628000 3836 4507 1 chrUn.!!$R4 671
13 TraesCS1B01G212200 chr5B 226521100 226522100 1000 True 1683.00 1683 97.006000 3505 4505 1 chr5B.!!$R1 1000
14 TraesCS1B01G212200 chr5B 226528759 226529761 1002 True 1664.00 1664 96.614000 3505 4507 1 chr5B.!!$R2 1002
15 TraesCS1B01G212200 chr6B 379700825 379701754 929 False 1522.00 1522 96.356000 3504 4425 1 chr6B.!!$F1 921

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
579 590 0.030908 GCTACTGCTACTGCTACGGG 59.969 60.0 0.0 0.0 40.48 5.28 F
1068 1142 0.036671 CCAACCAGGTAACCCGACTC 60.037 60.0 0.0 0.0 35.12 3.36 F
2593 2696 0.028242 TTGTAGCGGTGTTTGTTGCG 59.972 50.0 0.0 0.0 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1533 1630 0.033109 ACCAATTTAGGGAGCTGGGC 60.033 55.0 0.00 0.00 0.00 5.36 R
3066 3259 0.407918 AATCGGGGGTTGTGGTTGAT 59.592 50.0 0.00 0.00 0.00 2.57 R
3857 4290 1.282930 GGTCGAATTAGCCGGATCGC 61.283 60.0 5.05 3.21 35.39 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.971413 GCCGCTGCTAGCCATGAG 60.971 66.667 13.29 3.62 38.18 2.90
18 19 2.971413 CCGCTGCTAGCCATGAGC 60.971 66.667 13.29 13.34 38.18 4.26
20 21 2.532256 CGCTGCTAGCCATGAGCAC 61.532 63.158 20.80 1.72 44.89 4.40
21 22 1.450848 GCTGCTAGCCATGAGCACA 60.451 57.895 17.36 0.00 44.89 4.57
22 23 1.437772 GCTGCTAGCCATGAGCACAG 61.438 60.000 17.36 10.14 44.89 3.66
23 24 0.107800 CTGCTAGCCATGAGCACAGT 60.108 55.000 13.29 0.00 44.89 3.55
24 25 0.107993 TGCTAGCCATGAGCACAGTC 60.108 55.000 13.29 1.55 44.89 3.51
25 26 3.449489 TGCTAGCCATGAGCACAGTCC 62.449 57.143 13.29 0.00 44.89 3.85
28 29 3.071580 GCCATGAGCACAGTCCTAC 57.928 57.895 0.00 0.00 42.97 3.18
29 30 0.462759 GCCATGAGCACAGTCCTACC 60.463 60.000 0.00 0.00 42.97 3.18
30 31 1.198713 CCATGAGCACAGTCCTACCT 58.801 55.000 0.00 0.00 0.00 3.08
31 32 1.556911 CCATGAGCACAGTCCTACCTT 59.443 52.381 0.00 0.00 0.00 3.50
32 33 2.625737 CATGAGCACAGTCCTACCTTG 58.374 52.381 0.00 0.00 0.00 3.61
33 34 0.976641 TGAGCACAGTCCTACCTTGG 59.023 55.000 0.00 0.00 0.00 3.61
34 35 0.391793 GAGCACAGTCCTACCTTGGC 60.392 60.000 0.00 0.00 0.00 4.52
35 36 1.377333 GCACAGTCCTACCTTGGCC 60.377 63.158 0.00 0.00 0.00 5.36
36 37 1.842381 GCACAGTCCTACCTTGGCCT 61.842 60.000 3.32 0.00 0.00 5.19
37 38 0.693049 CACAGTCCTACCTTGGCCTT 59.307 55.000 3.32 0.00 0.00 4.35
38 39 0.693049 ACAGTCCTACCTTGGCCTTG 59.307 55.000 3.32 0.00 0.00 3.61
39 40 0.984230 CAGTCCTACCTTGGCCTTGA 59.016 55.000 3.32 0.00 0.00 3.02
40 41 1.561542 CAGTCCTACCTTGGCCTTGAT 59.438 52.381 3.32 0.00 0.00 2.57
41 42 1.561542 AGTCCTACCTTGGCCTTGATG 59.438 52.381 3.32 0.00 0.00 3.07
42 43 0.255890 TCCTACCTTGGCCTTGATGC 59.744 55.000 3.32 0.00 0.00 3.91
43 44 0.257039 CCTACCTTGGCCTTGATGCT 59.743 55.000 3.32 0.00 0.00 3.79
44 45 1.673168 CTACCTTGGCCTTGATGCTC 58.327 55.000 3.32 0.00 0.00 4.26
45 46 0.255890 TACCTTGGCCTTGATGCTCC 59.744 55.000 3.32 0.00 0.00 4.70
46 47 1.755783 CCTTGGCCTTGATGCTCCC 60.756 63.158 3.32 0.00 0.00 4.30
47 48 2.045045 TTGGCCTTGATGCTCCCG 60.045 61.111 3.32 0.00 0.00 5.14
48 49 2.826777 CTTGGCCTTGATGCTCCCGT 62.827 60.000 3.32 0.00 0.00 5.28
49 50 2.825836 GGCCTTGATGCTCCCGTG 60.826 66.667 0.00 0.00 0.00 4.94
50 51 2.268920 GCCTTGATGCTCCCGTGA 59.731 61.111 0.00 0.00 0.00 4.35
51 52 1.817099 GCCTTGATGCTCCCGTGAG 60.817 63.158 0.00 0.00 41.84 3.51
66 67 2.706636 TGAGCCACACAAGCTTCAC 58.293 52.632 0.00 0.00 41.75 3.18
67 68 1.159713 TGAGCCACACAAGCTTCACG 61.160 55.000 0.00 0.00 41.75 4.35
68 69 2.050985 GCCACACAAGCTTCACGC 60.051 61.111 0.00 0.00 39.57 5.34
69 70 2.639286 CCACACAAGCTTCACGCC 59.361 61.111 0.00 0.00 40.39 5.68
70 71 1.893808 CCACACAAGCTTCACGCCT 60.894 57.895 0.00 0.00 40.39 5.52
71 72 0.602638 CCACACAAGCTTCACGCCTA 60.603 55.000 0.00 0.00 40.39 3.93
72 73 0.512952 CACACAAGCTTCACGCCTAC 59.487 55.000 0.00 0.00 40.39 3.18
73 74 0.602905 ACACAAGCTTCACGCCTACC 60.603 55.000 0.00 0.00 40.39 3.18
74 75 0.320771 CACAAGCTTCACGCCTACCT 60.321 55.000 0.00 0.00 40.39 3.08
75 76 1.067142 CACAAGCTTCACGCCTACCTA 60.067 52.381 0.00 0.00 40.39 3.08
76 77 1.831736 ACAAGCTTCACGCCTACCTAT 59.168 47.619 0.00 0.00 40.39 2.57
77 78 2.205074 CAAGCTTCACGCCTACCTATG 58.795 52.381 0.00 0.00 40.39 2.23
78 79 0.105039 AGCTTCACGCCTACCTATGC 59.895 55.000 0.00 0.00 40.39 3.14
79 80 0.105039 GCTTCACGCCTACCTATGCT 59.895 55.000 0.00 0.00 0.00 3.79
80 81 1.870167 GCTTCACGCCTACCTATGCTC 60.870 57.143 0.00 0.00 0.00 4.26
81 82 0.750850 TTCACGCCTACCTATGCTCC 59.249 55.000 0.00 0.00 0.00 4.70
82 83 0.106167 TCACGCCTACCTATGCTCCT 60.106 55.000 0.00 0.00 0.00 3.69
83 84 0.315568 CACGCCTACCTATGCTCCTC 59.684 60.000 0.00 0.00 0.00 3.71
84 85 0.186386 ACGCCTACCTATGCTCCTCT 59.814 55.000 0.00 0.00 0.00 3.69
85 86 1.333177 CGCCTACCTATGCTCCTCTT 58.667 55.000 0.00 0.00 0.00 2.85
86 87 1.000283 CGCCTACCTATGCTCCTCTTG 60.000 57.143 0.00 0.00 0.00 3.02
87 88 1.270571 GCCTACCTATGCTCCTCTTGC 60.271 57.143 0.00 0.00 0.00 4.01
88 89 2.324541 CCTACCTATGCTCCTCTTGCT 58.675 52.381 0.00 0.00 0.00 3.91
89 90 2.298729 CCTACCTATGCTCCTCTTGCTC 59.701 54.545 0.00 0.00 0.00 4.26
90 91 0.749649 ACCTATGCTCCTCTTGCTCG 59.250 55.000 0.00 0.00 0.00 5.03
91 92 0.033228 CCTATGCTCCTCTTGCTCGG 59.967 60.000 0.00 0.00 0.00 4.63
92 93 0.599728 CTATGCTCCTCTTGCTCGGC 60.600 60.000 0.00 0.00 0.00 5.54
93 94 2.355445 TATGCTCCTCTTGCTCGGCG 62.355 60.000 0.00 0.00 0.00 6.46
112 113 3.283684 CCGCCAACCGCTCAACAA 61.284 61.111 0.00 0.00 35.03 2.83
113 114 2.718731 CGCCAACCGCTCAACAAA 59.281 55.556 0.00 0.00 34.21 2.83
114 115 1.064946 CGCCAACCGCTCAACAAAA 59.935 52.632 0.00 0.00 34.21 2.44
115 116 0.318614 CGCCAACCGCTCAACAAAAT 60.319 50.000 0.00 0.00 34.21 1.82
116 117 1.139163 GCCAACCGCTCAACAAAATG 58.861 50.000 0.00 0.00 0.00 2.32
117 118 1.139163 CCAACCGCTCAACAAAATGC 58.861 50.000 0.00 0.00 0.00 3.56
118 119 1.139163 CAACCGCTCAACAAAATGCC 58.861 50.000 0.00 0.00 0.00 4.40
119 120 0.033366 AACCGCTCAACAAAATGCCC 59.967 50.000 0.00 0.00 0.00 5.36
120 121 1.112315 ACCGCTCAACAAAATGCCCA 61.112 50.000 0.00 0.00 0.00 5.36
121 122 0.033228 CCGCTCAACAAAATGCCCAA 59.967 50.000 0.00 0.00 0.00 4.12
122 123 1.139163 CGCTCAACAAAATGCCCAAC 58.861 50.000 0.00 0.00 0.00 3.77
123 124 1.537776 CGCTCAACAAAATGCCCAACA 60.538 47.619 0.00 0.00 0.00 3.33
124 125 2.769893 GCTCAACAAAATGCCCAACAT 58.230 42.857 0.00 0.00 42.30 2.71
125 126 3.613671 CGCTCAACAAAATGCCCAACATA 60.614 43.478 0.00 0.00 38.34 2.29
126 127 4.314121 GCTCAACAAAATGCCCAACATAA 58.686 39.130 0.00 0.00 38.34 1.90
127 128 4.937015 GCTCAACAAAATGCCCAACATAAT 59.063 37.500 0.00 0.00 38.34 1.28
128 129 5.412286 GCTCAACAAAATGCCCAACATAATT 59.588 36.000 0.00 0.00 38.34 1.40
129 130 6.593382 GCTCAACAAAATGCCCAACATAATTA 59.407 34.615 0.00 0.00 38.34 1.40
130 131 7.118971 GCTCAACAAAATGCCCAACATAATTAA 59.881 33.333 0.00 0.00 38.34 1.40
131 132 8.908786 TCAACAAAATGCCCAACATAATTAAA 57.091 26.923 0.00 0.00 38.34 1.52
132 133 9.342308 TCAACAAAATGCCCAACATAATTAAAA 57.658 25.926 0.00 0.00 38.34 1.52
135 136 8.738106 ACAAAATGCCCAACATAATTAAAATGG 58.262 29.630 6.23 6.75 38.34 3.16
143 144 8.947055 CCAACATAATTAAAATGGGAAGGAAG 57.053 34.615 6.23 0.00 0.00 3.46
144 145 8.757877 CCAACATAATTAAAATGGGAAGGAAGA 58.242 33.333 6.23 0.00 0.00 2.87
147 148 9.768215 ACATAATTAAAATGGGAAGGAAGAAGA 57.232 29.630 6.23 0.00 0.00 2.87
153 154 9.777297 TTAAAATGGGAAGGAAGAAGAAAATTG 57.223 29.630 0.00 0.00 0.00 2.32
154 155 4.871933 TGGGAAGGAAGAAGAAAATTGC 57.128 40.909 0.00 0.00 0.00 3.56
155 156 4.482990 TGGGAAGGAAGAAGAAAATTGCT 58.517 39.130 0.00 0.00 0.00 3.91
156 157 5.640147 TGGGAAGGAAGAAGAAAATTGCTA 58.360 37.500 0.00 0.00 0.00 3.49
157 158 5.476945 TGGGAAGGAAGAAGAAAATTGCTAC 59.523 40.000 0.00 0.00 0.00 3.58
158 159 5.476945 GGGAAGGAAGAAGAAAATTGCTACA 59.523 40.000 0.00 0.00 0.00 2.74
159 160 6.153510 GGGAAGGAAGAAGAAAATTGCTACAT 59.846 38.462 0.00 0.00 0.00 2.29
160 161 7.031975 GGAAGGAAGAAGAAAATTGCTACATG 58.968 38.462 0.00 0.00 0.00 3.21
161 162 6.521151 AGGAAGAAGAAAATTGCTACATGG 57.479 37.500 0.00 0.00 0.00 3.66
162 163 5.420104 AGGAAGAAGAAAATTGCTACATGGG 59.580 40.000 0.00 0.00 0.00 4.00
163 164 4.725790 AGAAGAAAATTGCTACATGGGC 57.274 40.909 0.00 1.45 0.00 5.36
164 165 4.088634 AGAAGAAAATTGCTACATGGGCA 58.911 39.130 10.80 10.80 37.97 5.36
170 171 2.584835 TTGCTACATGGGCAAAGACT 57.415 45.000 20.62 0.00 45.05 3.24
171 172 1.825090 TGCTACATGGGCAAAGACTG 58.175 50.000 12.15 0.00 36.71 3.51
172 173 1.098050 GCTACATGGGCAAAGACTGG 58.902 55.000 0.00 0.00 0.00 4.00
173 174 1.614317 GCTACATGGGCAAAGACTGGT 60.614 52.381 0.00 0.00 0.00 4.00
174 175 2.359900 CTACATGGGCAAAGACTGGTC 58.640 52.381 0.00 0.00 0.00 4.02
175 176 0.478072 ACATGGGCAAAGACTGGTCA 59.522 50.000 0.00 0.00 0.00 4.02
176 177 1.133513 ACATGGGCAAAGACTGGTCAA 60.134 47.619 0.00 0.00 0.00 3.18
177 178 1.962807 CATGGGCAAAGACTGGTCAAA 59.037 47.619 3.51 0.00 0.00 2.69
178 179 2.151502 TGGGCAAAGACTGGTCAAAA 57.848 45.000 3.51 0.00 0.00 2.44
179 180 1.754226 TGGGCAAAGACTGGTCAAAAC 59.246 47.619 3.51 0.00 0.00 2.43
180 181 2.031870 GGGCAAAGACTGGTCAAAACT 58.968 47.619 3.51 0.00 0.00 2.66
181 182 3.219281 GGGCAAAGACTGGTCAAAACTA 58.781 45.455 3.51 0.00 0.00 2.24
182 183 3.826729 GGGCAAAGACTGGTCAAAACTAT 59.173 43.478 3.51 0.00 0.00 2.12
183 184 5.007682 GGGCAAAGACTGGTCAAAACTATA 58.992 41.667 3.51 0.00 0.00 1.31
184 185 5.106277 GGGCAAAGACTGGTCAAAACTATAC 60.106 44.000 3.51 0.00 0.00 1.47
185 186 5.106277 GGCAAAGACTGGTCAAAACTATACC 60.106 44.000 3.51 0.00 0.00 2.73
186 187 5.472137 GCAAAGACTGGTCAAAACTATACCA 59.528 40.000 3.51 0.00 40.94 3.25
187 188 6.016610 GCAAAGACTGGTCAAAACTATACCAA 60.017 38.462 3.51 0.00 42.53 3.67
188 189 7.584987 CAAAGACTGGTCAAAACTATACCAAG 58.415 38.462 3.51 0.00 42.53 3.61
189 190 6.435292 AGACTGGTCAAAACTATACCAAGT 57.565 37.500 3.51 0.00 42.53 3.16
190 191 6.465084 AGACTGGTCAAAACTATACCAAGTC 58.535 40.000 3.51 0.00 42.53 3.01
191 192 6.042781 AGACTGGTCAAAACTATACCAAGTCA 59.957 38.462 17.51 0.00 42.53 3.41
192 193 6.231211 ACTGGTCAAAACTATACCAAGTCAG 58.769 40.000 0.00 0.00 42.53 3.51
193 194 5.001232 TGGTCAAAACTATACCAAGTCAGC 58.999 41.667 0.00 0.00 40.28 4.26
194 195 5.001232 GGTCAAAACTATACCAAGTCAGCA 58.999 41.667 0.00 0.00 33.28 4.41
195 196 5.648092 GGTCAAAACTATACCAAGTCAGCAT 59.352 40.000 0.00 0.00 33.28 3.79
196 197 6.821665 GGTCAAAACTATACCAAGTCAGCATA 59.178 38.462 0.00 0.00 33.28 3.14
197 198 7.335924 GGTCAAAACTATACCAAGTCAGCATAA 59.664 37.037 0.00 0.00 33.28 1.90
198 199 8.726988 GTCAAAACTATACCAAGTCAGCATAAA 58.273 33.333 0.00 0.00 0.00 1.40
199 200 9.290988 TCAAAACTATACCAAGTCAGCATAAAA 57.709 29.630 0.00 0.00 0.00 1.52
200 201 9.906660 CAAAACTATACCAAGTCAGCATAAAAA 57.093 29.630 0.00 0.00 0.00 1.94
201 202 9.908152 AAAACTATACCAAGTCAGCATAAAAAC 57.092 29.630 0.00 0.00 0.00 2.43
202 203 7.625828 ACTATACCAAGTCAGCATAAAAACC 57.374 36.000 0.00 0.00 0.00 3.27
203 204 7.172342 ACTATACCAAGTCAGCATAAAAACCA 58.828 34.615 0.00 0.00 0.00 3.67
204 205 4.584327 ACCAAGTCAGCATAAAAACCAC 57.416 40.909 0.00 0.00 0.00 4.16
205 206 4.215109 ACCAAGTCAGCATAAAAACCACT 58.785 39.130 0.00 0.00 0.00 4.00
206 207 4.649218 ACCAAGTCAGCATAAAAACCACTT 59.351 37.500 0.00 0.00 0.00 3.16
207 208 5.128663 ACCAAGTCAGCATAAAAACCACTTT 59.871 36.000 0.00 0.00 0.00 2.66
208 209 6.048509 CCAAGTCAGCATAAAAACCACTTTT 58.951 36.000 0.00 0.00 40.42 2.27
209 210 6.018832 CCAAGTCAGCATAAAAACCACTTTTG 60.019 38.462 0.00 0.00 37.78 2.44
210 211 6.220726 AGTCAGCATAAAAACCACTTTTGT 57.779 33.333 0.00 0.00 37.78 2.83
211 212 6.639563 AGTCAGCATAAAAACCACTTTTGTT 58.360 32.000 0.00 0.00 37.78 2.83
212 213 6.534793 AGTCAGCATAAAAACCACTTTTGTTG 59.465 34.615 0.00 0.00 37.78 3.33
213 214 6.533367 GTCAGCATAAAAACCACTTTTGTTGA 59.467 34.615 0.00 0.00 37.78 3.18
214 215 6.756074 TCAGCATAAAAACCACTTTTGTTGAG 59.244 34.615 0.00 0.00 37.78 3.02
215 216 6.756074 CAGCATAAAAACCACTTTTGTTGAGA 59.244 34.615 0.00 0.00 37.78 3.27
216 217 7.439056 CAGCATAAAAACCACTTTTGTTGAGAT 59.561 33.333 0.00 0.00 37.78 2.75
217 218 8.637986 AGCATAAAAACCACTTTTGTTGAGATA 58.362 29.630 0.00 0.00 37.78 1.98
218 219 8.915654 GCATAAAAACCACTTTTGTTGAGATAG 58.084 33.333 0.00 0.00 37.78 2.08
221 222 6.884280 AAACCACTTTTGTTGAGATAGAGG 57.116 37.500 0.00 0.00 0.00 3.69
222 223 5.825593 ACCACTTTTGTTGAGATAGAGGA 57.174 39.130 0.00 0.00 0.00 3.71
223 224 5.552178 ACCACTTTTGTTGAGATAGAGGAC 58.448 41.667 0.00 0.00 0.00 3.85
224 225 5.308237 ACCACTTTTGTTGAGATAGAGGACT 59.692 40.000 0.00 0.00 0.00 3.85
225 226 6.497259 ACCACTTTTGTTGAGATAGAGGACTA 59.503 38.462 0.00 0.00 0.00 2.59
226 227 7.016268 ACCACTTTTGTTGAGATAGAGGACTAA 59.984 37.037 0.00 0.00 32.04 2.24
227 228 7.878127 CCACTTTTGTTGAGATAGAGGACTAAA 59.122 37.037 0.00 0.00 32.04 1.85
228 229 8.713271 CACTTTTGTTGAGATAGAGGACTAAAC 58.287 37.037 0.00 0.00 32.04 2.01
229 230 8.652290 ACTTTTGTTGAGATAGAGGACTAAACT 58.348 33.333 0.00 0.00 32.04 2.66
234 235 9.475620 TGTTGAGATAGAGGACTAAACTAATCA 57.524 33.333 0.00 0.00 32.04 2.57
235 236 9.959749 GTTGAGATAGAGGACTAAACTAATCAG 57.040 37.037 0.00 0.00 32.04 2.90
236 237 8.698973 TGAGATAGAGGACTAAACTAATCAGG 57.301 38.462 0.00 0.00 32.04 3.86
237 238 8.282982 TGAGATAGAGGACTAAACTAATCAGGT 58.717 37.037 0.00 0.00 32.04 4.00
238 239 9.138596 GAGATAGAGGACTAAACTAATCAGGTT 57.861 37.037 0.00 0.00 35.33 3.50
239 240 9.495382 AGATAGAGGACTAAACTAATCAGGTTT 57.505 33.333 0.00 0.00 39.70 3.27
253 254 9.515226 ACTAATCAGGTTTAAATAGTTGAAGCA 57.485 29.630 11.38 0.00 34.20 3.91
254 255 9.774742 CTAATCAGGTTTAAATAGTTGAAGCAC 57.225 33.333 11.38 0.00 34.20 4.40
255 256 6.569179 TCAGGTTTAAATAGTTGAAGCACC 57.431 37.500 11.38 0.00 34.20 5.01
256 257 6.065374 TCAGGTTTAAATAGTTGAAGCACCA 58.935 36.000 11.38 0.00 34.20 4.17
257 258 6.547880 TCAGGTTTAAATAGTTGAAGCACCAA 59.452 34.615 11.38 0.00 34.20 3.67
258 259 7.232534 TCAGGTTTAAATAGTTGAAGCACCAAT 59.767 33.333 11.38 0.00 34.20 3.16
259 260 7.542130 CAGGTTTAAATAGTTGAAGCACCAATC 59.458 37.037 11.38 0.00 34.20 2.67
260 261 7.451566 AGGTTTAAATAGTTGAAGCACCAATCT 59.548 33.333 11.38 0.00 34.20 2.40
261 262 8.088365 GGTTTAAATAGTTGAAGCACCAATCTT 58.912 33.333 4.96 0.00 32.56 2.40
262 263 9.476202 GTTTAAATAGTTGAAGCACCAATCTTT 57.524 29.630 0.00 0.00 0.00 2.52
266 267 5.551760 AGTTGAAGCACCAATCTTTATCG 57.448 39.130 0.00 0.00 0.00 2.92
267 268 5.245531 AGTTGAAGCACCAATCTTTATCGA 58.754 37.500 0.00 0.00 0.00 3.59
268 269 5.882557 AGTTGAAGCACCAATCTTTATCGAT 59.117 36.000 2.16 2.16 0.00 3.59
269 270 6.375455 AGTTGAAGCACCAATCTTTATCGATT 59.625 34.615 1.71 0.00 34.07 3.34
270 271 6.757897 TGAAGCACCAATCTTTATCGATTT 57.242 33.333 1.71 0.00 31.52 2.17
271 272 7.156876 TGAAGCACCAATCTTTATCGATTTT 57.843 32.000 1.71 0.00 31.52 1.82
272 273 8.275015 TGAAGCACCAATCTTTATCGATTTTA 57.725 30.769 1.71 0.00 31.52 1.52
273 274 8.735315 TGAAGCACCAATCTTTATCGATTTTAA 58.265 29.630 1.71 0.00 31.52 1.52
274 275 9.567848 GAAGCACCAATCTTTATCGATTTTAAA 57.432 29.630 1.71 0.00 31.52 1.52
275 276 9.573133 AAGCACCAATCTTTATCGATTTTAAAG 57.427 29.630 1.71 8.02 37.79 1.85
276 277 8.739972 AGCACCAATCTTTATCGATTTTAAAGT 58.260 29.630 15.39 4.60 37.72 2.66
277 278 9.353999 GCACCAATCTTTATCGATTTTAAAGTT 57.646 29.630 15.39 7.60 37.72 2.66
285 286 9.556030 CTTTATCGATTTTAAAGTTGAAGGACC 57.444 33.333 1.71 0.00 33.78 4.46
286 287 8.624367 TTATCGATTTTAAAGTTGAAGGACCA 57.376 30.769 1.71 0.00 0.00 4.02
287 288 7.703058 ATCGATTTTAAAGTTGAAGGACCAT 57.297 32.000 4.88 0.00 0.00 3.55
288 289 7.519032 TCGATTTTAAAGTTGAAGGACCATT 57.481 32.000 0.00 0.00 0.00 3.16
289 290 7.947282 TCGATTTTAAAGTTGAAGGACCATTT 58.053 30.769 0.00 0.00 0.00 2.32
290 291 8.079809 TCGATTTTAAAGTTGAAGGACCATTTC 58.920 33.333 0.00 0.00 0.00 2.17
291 292 8.082242 CGATTTTAAAGTTGAAGGACCATTTCT 58.918 33.333 0.00 0.00 0.00 2.52
353 354 8.760980 TTCCCTTTAGAAAAAGAAGTGAATGA 57.239 30.769 0.00 0.00 44.14 2.57
383 384 2.180946 TGTGGATAGATGGACAGCCT 57.819 50.000 0.00 0.00 34.31 4.58
419 420 1.528076 GTCATGCCCCACACACACA 60.528 57.895 0.00 0.00 0.00 3.72
440 446 8.051909 CACACATCAATCAAAGAAACGAAAAAG 58.948 33.333 0.00 0.00 0.00 2.27
441 447 7.222611 ACACATCAATCAAAGAAACGAAAAAGG 59.777 33.333 0.00 0.00 0.00 3.11
456 467 4.437820 CGAAAAAGGAAAACAAGCTTCGAG 59.562 41.667 0.00 0.00 37.25 4.04
482 493 2.046892 CAGGGCAGGGACGAACAG 60.047 66.667 0.00 0.00 0.00 3.16
489 500 1.927895 CAGGGACGAACAGCTGATAC 58.072 55.000 23.35 9.91 0.00 2.24
555 566 0.388649 CACGAGTGGAGGAAAGTCGG 60.389 60.000 5.73 0.00 43.25 4.79
557 568 1.878656 CGAGTGGAGGAAAGTCGGCT 61.879 60.000 0.00 0.00 36.94 5.52
573 584 1.086634 GGCTGTGCTACTGCTACTGC 61.087 60.000 14.32 0.00 41.90 4.40
574 585 0.108424 GCTGTGCTACTGCTACTGCT 60.108 55.000 9.68 0.00 39.55 4.24
575 586 1.135139 GCTGTGCTACTGCTACTGCTA 59.865 52.381 9.68 0.00 39.55 3.49
576 587 2.803451 CTGTGCTACTGCTACTGCTAC 58.197 52.381 0.00 0.00 40.48 3.58
577 588 1.132453 TGTGCTACTGCTACTGCTACG 59.868 52.381 0.00 0.00 40.48 3.51
578 589 0.738975 TGCTACTGCTACTGCTACGG 59.261 55.000 0.00 0.00 40.48 4.02
579 590 0.030908 GCTACTGCTACTGCTACGGG 59.969 60.000 0.00 0.00 40.48 5.28
580 591 1.676746 CTACTGCTACTGCTACGGGA 58.323 55.000 0.00 0.00 40.48 5.14
625 641 3.367646 AGATCCGGTCTCACTGTCTAA 57.632 47.619 0.00 0.00 28.45 2.10
633 649 4.487019 GGTCTCACTGTCTAAAGCAGTAC 58.513 47.826 6.71 0.00 44.43 2.73
636 652 6.403855 GGTCTCACTGTCTAAAGCAGTACTAG 60.404 46.154 0.00 0.00 44.43 2.57
637 653 6.149807 GTCTCACTGTCTAAAGCAGTACTAGT 59.850 42.308 0.00 0.00 44.43 2.57
638 654 7.333921 GTCTCACTGTCTAAAGCAGTACTAGTA 59.666 40.741 0.00 0.00 44.43 1.82
640 656 9.327628 CTCACTGTCTAAAGCAGTACTAGTATA 57.672 37.037 5.75 0.00 44.43 1.47
641 657 9.107177 TCACTGTCTAAAGCAGTACTAGTATAC 57.893 37.037 5.75 0.00 44.43 1.47
642 658 9.111613 CACTGTCTAAAGCAGTACTAGTATACT 57.888 37.037 10.87 10.87 44.43 2.12
643 659 9.328845 ACTGTCTAAAGCAGTACTAGTATACTC 57.671 37.037 9.12 0.00 44.41 2.59
645 661 8.200120 TGTCTAAAGCAGTACTAGTATACTCGA 58.800 37.037 9.12 0.00 32.92 4.04
648 664 9.426837 CTAAAGCAGTACTAGTATACTCGATCT 57.573 37.037 9.12 4.75 32.92 2.75
649 665 7.894376 AAGCAGTACTAGTATACTCGATCTC 57.106 40.000 9.12 0.00 32.92 2.75
674 695 2.033424 GGCGTAAGGAAATGAATGGAGC 59.967 50.000 0.00 0.00 38.28 4.70
705 726 3.109619 CTGAATAGAAAGCGACGGAGAC 58.890 50.000 0.00 0.00 0.00 3.36
710 731 2.069273 AGAAAGCGACGGAGACAATTG 58.931 47.619 3.24 3.24 0.00 2.32
722 743 4.142902 CGGAGACAATTGAAATACGCAACT 60.143 41.667 13.59 0.00 0.00 3.16
736 757 1.882682 GCAACTCGCGCTAAACACGA 61.883 55.000 5.56 0.00 0.00 4.35
749 782 4.374702 CACGACGCAAGCCACAGC 62.375 66.667 0.00 0.00 45.62 4.40
801 834 1.396653 GTGCCCTGATGCTGCTTAAT 58.603 50.000 0.00 0.00 0.00 1.40
803 836 2.951642 GTGCCCTGATGCTGCTTAATAA 59.048 45.455 0.00 0.00 0.00 1.40
804 837 2.951642 TGCCCTGATGCTGCTTAATAAC 59.048 45.455 0.00 0.00 0.00 1.89
809 842 5.468072 CCCTGATGCTGCTTAATAACAGTAG 59.532 44.000 0.00 0.00 36.26 2.57
824 857 5.646577 AACAGTAGTAGTAGTTGAGGCAG 57.353 43.478 0.00 0.00 0.00 4.85
825 858 4.017808 ACAGTAGTAGTAGTTGAGGCAGG 58.982 47.826 0.00 0.00 0.00 4.85
826 859 4.263816 ACAGTAGTAGTAGTTGAGGCAGGA 60.264 45.833 0.00 0.00 0.00 3.86
827 860 4.336993 CAGTAGTAGTAGTTGAGGCAGGAG 59.663 50.000 0.00 0.00 0.00 3.69
828 861 2.104170 AGTAGTAGTTGAGGCAGGAGC 58.896 52.381 0.00 0.00 41.10 4.70
829 862 1.103803 TAGTAGTTGAGGCAGGAGCG 58.896 55.000 0.00 0.00 43.41 5.03
875 908 1.595357 GTTGGTACTGGCGGCTACT 59.405 57.895 11.43 0.00 0.00 2.57
876 909 0.819582 GTTGGTACTGGCGGCTACTA 59.180 55.000 11.43 0.00 0.00 1.82
931 991 3.628982 GACCCGGGGGAACGTGAA 61.629 66.667 27.92 0.00 38.96 3.18
932 992 3.169956 ACCCGGGGGAACGTGAAA 61.170 61.111 27.92 0.00 38.96 2.69
933 993 2.359478 CCCGGGGGAACGTGAAAG 60.359 66.667 14.71 0.00 37.50 2.62
935 995 2.359478 CGGGGGAACGTGAAAGGG 60.359 66.667 0.00 0.00 0.00 3.95
943 1010 0.845102 AACGTGAAAGGGGGAGGGAT 60.845 55.000 0.00 0.00 0.00 3.85
1065 1139 2.225596 CCCCAACCAGGTAACCCGA 61.226 63.158 0.00 0.00 35.12 5.14
1068 1142 0.036671 CCAACCAGGTAACCCGACTC 60.037 60.000 0.00 0.00 35.12 3.36
1093 1167 2.058001 CGGAAAAGCCCATTCCCCC 61.058 63.158 7.07 0.00 42.80 5.40
1140 1214 2.879002 TATTTCTCTGCTCTGGCTCG 57.121 50.000 0.00 0.00 39.59 5.03
1142 1216 2.513026 TTTCTCTGCTCTGGCTCGGC 62.513 60.000 0.00 0.00 39.59 5.54
1143 1217 4.869440 CTCTGCTCTGGCTCGGCG 62.869 72.222 0.00 0.00 39.59 6.46
1173 1257 5.760253 ACACGACATCACAAATCTTCTTCTT 59.240 36.000 0.00 0.00 0.00 2.52
1175 1265 6.146837 CACGACATCACAAATCTTCTTCTTCT 59.853 38.462 0.00 0.00 0.00 2.85
1178 1268 7.543868 CGACATCACAAATCTTCTTCTTCTACT 59.456 37.037 0.00 0.00 0.00 2.57
1179 1269 8.770438 ACATCACAAATCTTCTTCTTCTACTC 57.230 34.615 0.00 0.00 0.00 2.59
1180 1270 8.592809 ACATCACAAATCTTCTTCTTCTACTCT 58.407 33.333 0.00 0.00 0.00 3.24
1183 1273 9.303116 TCACAAATCTTCTTCTTCTACTCTACT 57.697 33.333 0.00 0.00 0.00 2.57
1190 1280 9.044646 TCTTCTTCTTCTACTCTACTACTACCA 57.955 37.037 0.00 0.00 0.00 3.25
1191 1281 9.101655 CTTCTTCTTCTACTCTACTACTACCAC 57.898 40.741 0.00 0.00 0.00 4.16
1192 1282 7.563906 TCTTCTTCTACTCTACTACTACCACC 58.436 42.308 0.00 0.00 0.00 4.61
1193 1283 5.911752 TCTTCTACTCTACTACTACCACCG 58.088 45.833 0.00 0.00 0.00 4.94
1322 1412 8.369424 TGGTGTTGCTCAATTTTAGTACTACTA 58.631 33.333 0.91 0.00 0.00 1.82
1323 1413 8.654215 GGTGTTGCTCAATTTTAGTACTACTAC 58.346 37.037 0.91 0.00 28.93 2.73
1324 1414 9.420551 GTGTTGCTCAATTTTAGTACTACTACT 57.579 33.333 0.91 0.00 37.04 2.57
1325 1415 9.635520 TGTTGCTCAATTTTAGTACTACTACTC 57.364 33.333 0.91 0.00 34.79 2.59
1328 1418 9.239551 TGCTCAATTTTAGTACTACTACTCTCA 57.760 33.333 0.91 0.00 34.79 3.27
1367 1464 2.091278 TCATCCTGTTAGATCTCCCCGT 60.091 50.000 0.00 0.00 0.00 5.28
1469 1566 0.322975 AGATTCGCACTCCTGCTTGT 59.677 50.000 0.00 0.00 41.77 3.16
1520 1617 4.523083 TGCTATCCGCCTCAAACTAAATT 58.477 39.130 0.00 0.00 38.05 1.82
1533 1630 7.148440 CCTCAAACTAAATTTCTCAGCTCTCAG 60.148 40.741 0.00 0.00 0.00 3.35
1560 1657 3.769300 GCTCCCTAAATTGGTCAACCATT 59.231 43.478 2.03 0.00 46.97 3.16
1588 1685 6.729690 TTCCTCATTTCAAGTCCACAATTT 57.270 33.333 0.00 0.00 0.00 1.82
1589 1686 6.729690 TCCTCATTTCAAGTCCACAATTTT 57.270 33.333 0.00 0.00 0.00 1.82
1590 1687 7.123355 TCCTCATTTCAAGTCCACAATTTTT 57.877 32.000 0.00 0.00 0.00 1.94
1609 1706 2.060050 TTTTCCTCGTTTCAAGCCCA 57.940 45.000 0.00 0.00 0.00 5.36
1610 1707 1.314730 TTTCCTCGTTTCAAGCCCAC 58.685 50.000 0.00 0.00 0.00 4.61
1611 1708 0.882927 TTCCTCGTTTCAAGCCCACG 60.883 55.000 0.00 0.00 35.18 4.94
1612 1709 2.325082 CCTCGTTTCAAGCCCACGG 61.325 63.158 0.00 0.00 34.61 4.94
1663 1760 2.750814 TCTCCATGCATACAGGTCTCA 58.249 47.619 0.00 0.00 0.00 3.27
1760 1863 2.224233 CCTACCAGTCTCATGGATGCAG 60.224 54.545 0.00 0.00 43.57 4.41
1903 2006 4.779993 ATATCTTGGGAAGGTCCTTCAC 57.220 45.455 28.86 26.97 43.52 3.18
1912 2015 3.828657 GGTCCTTCACGGAACTACC 57.171 57.895 0.00 0.00 46.60 3.18
1924 2027 2.084546 GGAACTACCGCTTCAAATGCT 58.915 47.619 0.00 0.00 0.00 3.79
1927 2030 0.804364 CTACCGCTTCAAATGCTGCA 59.196 50.000 4.13 4.13 0.00 4.41
1972 2075 1.294459 GTTCCTTACGCCCGTCCTT 59.706 57.895 0.00 0.00 0.00 3.36
2073 2176 8.879342 AGTACATGCATTCTATTACTTCAGAC 57.121 34.615 0.00 0.00 0.00 3.51
2109 2212 2.104451 TGCCCATTTTGTTGCAGTCATT 59.896 40.909 0.00 0.00 0.00 2.57
2125 2228 7.977904 TGCAGTCATTATGTGTGATTTCTTAG 58.022 34.615 0.00 0.00 0.00 2.18
2167 2270 4.613437 ACAAATAGGGGTTGCTCATCATT 58.387 39.130 0.00 0.00 0.00 2.57
2317 2420 2.166459 GGTTAAATCAGCTTTGCTCCCC 59.834 50.000 0.00 0.00 36.40 4.81
2593 2696 0.028242 TTGTAGCGGTGTTTGTTGCG 59.972 50.000 0.00 0.00 0.00 4.85
2727 2830 9.950496 AGGATTCAGGTATGTTTATCATATGAC 57.050 33.333 7.78 0.00 40.54 3.06
2799 2904 9.763465 TCTGTTTAACAAAAGAAACTTAGTTCG 57.237 29.630 0.00 0.00 36.66 3.95
2827 2932 5.359194 TTTCTAGAATTCCCCACTAGCTG 57.641 43.478 5.89 0.00 35.15 4.24
3066 3259 9.542462 CAATTTTCCCTTATATCGTACTCTTCA 57.458 33.333 0.00 0.00 0.00 3.02
3130 3323 9.453572 TTGGCATGAAATATATCAGTCCTAATC 57.546 33.333 0.00 0.00 31.76 1.75
3244 3595 0.319986 TGGCTGTGTGCATTGCAATG 60.320 50.000 30.92 30.92 41.47 2.82
3260 3611 1.344953 AATGATGCAGAGGCCGGGTA 61.345 55.000 2.18 0.00 40.13 3.69
3279 3630 3.264964 GGTATTACCCTCCTTTCCACACA 59.735 47.826 0.98 0.00 30.04 3.72
3280 3631 2.943036 TTACCCTCCTTTCCACACAC 57.057 50.000 0.00 0.00 0.00 3.82
3353 3712 7.707893 ACAACTTAGTTTCTGTAACGCTTTAGA 59.292 33.333 0.00 0.00 41.78 2.10
3557 3989 4.256920 GACTCTACAGCAACACATCCAAT 58.743 43.478 0.00 0.00 0.00 3.16
3697 4130 4.561530 CGCTATGCATACTCAGGTACCAAT 60.562 45.833 15.94 0.00 0.00 3.16
3790 4223 3.250847 CACCAAGGACCAGGGTGT 58.749 61.111 20.84 0.00 45.48 4.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.971413 CTCATGGCTAGCAGCGGC 60.971 66.667 18.24 0.00 43.62 6.53
1 2 2.971413 GCTCATGGCTAGCAGCGG 60.971 66.667 18.24 2.74 43.62 5.52
2 3 2.202974 TGCTCATGGCTAGCAGCG 60.203 61.111 18.24 3.48 44.78 5.18
6 7 0.813210 GGACTGTGCTCATGGCTAGC 60.813 60.000 6.04 6.04 42.39 3.42
7 8 0.829333 AGGACTGTGCTCATGGCTAG 59.171 55.000 0.00 8.02 42.39 3.42
8 9 1.757118 GTAGGACTGTGCTCATGGCTA 59.243 52.381 4.68 0.00 42.39 3.93
9 10 0.539051 GTAGGACTGTGCTCATGGCT 59.461 55.000 4.68 0.00 42.39 4.75
10 11 0.462759 GGTAGGACTGTGCTCATGGC 60.463 60.000 4.68 0.00 42.22 4.40
11 12 1.198713 AGGTAGGACTGTGCTCATGG 58.801 55.000 4.68 0.00 0.00 3.66
12 13 2.625737 CAAGGTAGGACTGTGCTCATG 58.374 52.381 4.68 0.00 0.00 3.07
13 14 1.556911 CCAAGGTAGGACTGTGCTCAT 59.443 52.381 4.68 0.00 0.00 2.90
14 15 0.976641 CCAAGGTAGGACTGTGCTCA 59.023 55.000 4.68 0.00 0.00 4.26
15 16 0.391793 GCCAAGGTAGGACTGTGCTC 60.392 60.000 4.68 0.00 0.00 4.26
16 17 1.679898 GCCAAGGTAGGACTGTGCT 59.320 57.895 7.10 7.10 0.00 4.40
17 18 1.377333 GGCCAAGGTAGGACTGTGC 60.377 63.158 0.00 0.00 32.29 4.57
22 23 2.019156 GCATCAAGGCCAAGGTAGGAC 61.019 57.143 5.01 0.00 36.73 3.85
23 24 0.255890 GCATCAAGGCCAAGGTAGGA 59.744 55.000 5.01 0.00 0.00 2.94
24 25 0.257039 AGCATCAAGGCCAAGGTAGG 59.743 55.000 5.01 0.00 0.00 3.18
25 26 1.673168 GAGCATCAAGGCCAAGGTAG 58.327 55.000 5.01 0.00 33.17 3.18
26 27 0.255890 GGAGCATCAAGGCCAAGGTA 59.744 55.000 5.01 0.00 36.25 3.08
27 28 1.000396 GGAGCATCAAGGCCAAGGT 60.000 57.895 5.01 0.00 36.25 3.50
28 29 1.755783 GGGAGCATCAAGGCCAAGG 60.756 63.158 5.01 0.00 36.25 3.61
29 30 2.117156 CGGGAGCATCAAGGCCAAG 61.117 63.158 5.01 0.00 36.25 3.61
30 31 2.045045 CGGGAGCATCAAGGCCAA 60.045 61.111 5.01 0.00 36.25 4.52
31 32 3.329889 ACGGGAGCATCAAGGCCA 61.330 61.111 5.01 0.00 36.25 5.36
32 33 2.825836 CACGGGAGCATCAAGGCC 60.826 66.667 0.00 0.00 36.25 5.19
33 34 1.817099 CTCACGGGAGCATCAAGGC 60.817 63.158 0.00 0.00 36.25 4.35
34 35 4.528674 CTCACGGGAGCATCAAGG 57.471 61.111 0.00 0.00 36.25 3.61
47 48 0.308993 GTGAAGCTTGTGTGGCTCAC 59.691 55.000 2.10 12.54 46.31 3.51
48 49 1.159713 CGTGAAGCTTGTGTGGCTCA 61.160 55.000 2.10 0.00 39.30 4.26
49 50 1.571460 CGTGAAGCTTGTGTGGCTC 59.429 57.895 2.10 0.00 39.30 4.70
50 51 2.546494 GCGTGAAGCTTGTGTGGCT 61.546 57.895 2.10 0.00 44.04 4.75
51 52 2.050985 GCGTGAAGCTTGTGTGGC 60.051 61.111 2.10 0.00 44.04 5.01
61 62 1.269831 GGAGCATAGGTAGGCGTGAAG 60.270 57.143 0.00 0.00 38.16 3.02
62 63 0.750850 GGAGCATAGGTAGGCGTGAA 59.249 55.000 0.00 0.00 38.16 3.18
63 64 0.106167 AGGAGCATAGGTAGGCGTGA 60.106 55.000 0.00 0.00 38.16 4.35
64 65 0.315568 GAGGAGCATAGGTAGGCGTG 59.684 60.000 0.00 0.00 38.16 5.34
65 66 0.186386 AGAGGAGCATAGGTAGGCGT 59.814 55.000 0.00 0.00 38.16 5.68
66 67 1.000283 CAAGAGGAGCATAGGTAGGCG 60.000 57.143 0.00 0.00 38.16 5.52
67 68 1.270571 GCAAGAGGAGCATAGGTAGGC 60.271 57.143 0.00 0.00 0.00 3.93
68 69 2.298729 GAGCAAGAGGAGCATAGGTAGG 59.701 54.545 0.00 0.00 0.00 3.18
69 70 2.030363 CGAGCAAGAGGAGCATAGGTAG 60.030 54.545 0.00 0.00 0.00 3.18
70 71 1.957177 CGAGCAAGAGGAGCATAGGTA 59.043 52.381 0.00 0.00 0.00 3.08
71 72 0.749649 CGAGCAAGAGGAGCATAGGT 59.250 55.000 0.00 0.00 0.00 3.08
72 73 0.033228 CCGAGCAAGAGGAGCATAGG 59.967 60.000 0.00 0.00 0.00 2.57
73 74 0.599728 GCCGAGCAAGAGGAGCATAG 60.600 60.000 0.00 0.00 0.00 2.23
74 75 1.443407 GCCGAGCAAGAGGAGCATA 59.557 57.895 0.00 0.00 0.00 3.14
75 76 2.188994 GCCGAGCAAGAGGAGCAT 59.811 61.111 0.00 0.00 0.00 3.79
76 77 4.441695 CGCCGAGCAAGAGGAGCA 62.442 66.667 0.00 0.00 0.00 4.26
97 98 1.139163 CATTTTGTTGAGCGGTTGGC 58.861 50.000 0.00 0.00 44.05 4.52
98 99 1.139163 GCATTTTGTTGAGCGGTTGG 58.861 50.000 0.00 0.00 0.00 3.77
99 100 1.139163 GGCATTTTGTTGAGCGGTTG 58.861 50.000 0.00 0.00 0.00 3.77
100 101 0.033366 GGGCATTTTGTTGAGCGGTT 59.967 50.000 0.00 0.00 0.00 4.44
101 102 1.112315 TGGGCATTTTGTTGAGCGGT 61.112 50.000 0.00 0.00 0.00 5.68
102 103 0.033228 TTGGGCATTTTGTTGAGCGG 59.967 50.000 0.00 0.00 0.00 5.52
103 104 1.139163 GTTGGGCATTTTGTTGAGCG 58.861 50.000 0.00 0.00 0.00 5.03
104 105 2.237393 TGTTGGGCATTTTGTTGAGC 57.763 45.000 0.00 0.00 0.00 4.26
105 106 8.545229 TTAATTATGTTGGGCATTTTGTTGAG 57.455 30.769 0.00 0.00 38.94 3.02
106 107 8.908786 TTTAATTATGTTGGGCATTTTGTTGA 57.091 26.923 0.00 0.00 38.94 3.18
109 110 8.738106 CCATTTTAATTATGTTGGGCATTTTGT 58.262 29.630 0.00 0.00 38.94 2.83
110 111 8.189460 CCCATTTTAATTATGTTGGGCATTTTG 58.811 33.333 11.91 0.00 37.57 2.44
111 112 8.112183 TCCCATTTTAATTATGTTGGGCATTTT 58.888 29.630 16.74 0.00 42.90 1.82
112 113 7.637511 TCCCATTTTAATTATGTTGGGCATTT 58.362 30.769 16.74 0.00 42.90 2.32
113 114 7.205515 TCCCATTTTAATTATGTTGGGCATT 57.794 32.000 16.74 0.00 42.90 3.56
114 115 6.821616 TCCCATTTTAATTATGTTGGGCAT 57.178 33.333 16.74 0.00 42.90 4.40
115 116 6.352565 CCTTCCCATTTTAATTATGTTGGGCA 60.353 38.462 16.74 9.40 42.90 5.36
116 117 6.054941 CCTTCCCATTTTAATTATGTTGGGC 58.945 40.000 16.74 0.00 42.90 5.36
117 118 7.430760 TCCTTCCCATTTTAATTATGTTGGG 57.569 36.000 15.93 15.93 44.26 4.12
118 119 8.757877 TCTTCCTTCCCATTTTAATTATGTTGG 58.242 33.333 0.00 0.00 0.00 3.77
121 122 9.768215 TCTTCTTCCTTCCCATTTTAATTATGT 57.232 29.630 0.00 0.00 0.00 2.29
127 128 9.777297 CAATTTTCTTCTTCCTTCCCATTTTAA 57.223 29.630 0.00 0.00 0.00 1.52
128 129 7.877612 GCAATTTTCTTCTTCCTTCCCATTTTA 59.122 33.333 0.00 0.00 0.00 1.52
129 130 6.712095 GCAATTTTCTTCTTCCTTCCCATTTT 59.288 34.615 0.00 0.00 0.00 1.82
130 131 6.043590 AGCAATTTTCTTCTTCCTTCCCATTT 59.956 34.615 0.00 0.00 0.00 2.32
131 132 5.545335 AGCAATTTTCTTCTTCCTTCCCATT 59.455 36.000 0.00 0.00 0.00 3.16
132 133 5.089434 AGCAATTTTCTTCTTCCTTCCCAT 58.911 37.500 0.00 0.00 0.00 4.00
133 134 4.482990 AGCAATTTTCTTCTTCCTTCCCA 58.517 39.130 0.00 0.00 0.00 4.37
134 135 5.476945 TGTAGCAATTTTCTTCTTCCTTCCC 59.523 40.000 0.00 0.00 0.00 3.97
135 136 6.575162 TGTAGCAATTTTCTTCTTCCTTCC 57.425 37.500 0.00 0.00 0.00 3.46
136 137 7.031975 CCATGTAGCAATTTTCTTCTTCCTTC 58.968 38.462 0.00 0.00 0.00 3.46
137 138 6.071165 CCCATGTAGCAATTTTCTTCTTCCTT 60.071 38.462 0.00 0.00 0.00 3.36
138 139 5.420104 CCCATGTAGCAATTTTCTTCTTCCT 59.580 40.000 0.00 0.00 0.00 3.36
139 140 5.654497 CCCATGTAGCAATTTTCTTCTTCC 58.346 41.667 0.00 0.00 0.00 3.46
140 141 5.105063 GCCCATGTAGCAATTTTCTTCTTC 58.895 41.667 0.31 0.00 0.00 2.87
141 142 4.527816 TGCCCATGTAGCAATTTTCTTCTT 59.472 37.500 5.25 0.00 37.28 2.52
142 143 4.088634 TGCCCATGTAGCAATTTTCTTCT 58.911 39.130 5.25 0.00 37.28 2.85
143 144 4.454728 TGCCCATGTAGCAATTTTCTTC 57.545 40.909 5.25 0.00 37.28 2.87
144 145 4.888326 TTGCCCATGTAGCAATTTTCTT 57.112 36.364 14.50 0.00 44.95 2.52
152 153 1.614051 CCAGTCTTTGCCCATGTAGCA 60.614 52.381 3.66 3.66 38.81 3.49
153 154 1.098050 CCAGTCTTTGCCCATGTAGC 58.902 55.000 0.00 0.00 0.00 3.58
154 155 2.290260 TGACCAGTCTTTGCCCATGTAG 60.290 50.000 0.00 0.00 0.00 2.74
155 156 1.702401 TGACCAGTCTTTGCCCATGTA 59.298 47.619 0.00 0.00 0.00 2.29
156 157 0.478072 TGACCAGTCTTTGCCCATGT 59.522 50.000 0.00 0.00 0.00 3.21
157 158 1.619654 TTGACCAGTCTTTGCCCATG 58.380 50.000 0.00 0.00 0.00 3.66
158 159 2.365293 GTTTTGACCAGTCTTTGCCCAT 59.635 45.455 0.00 0.00 0.00 4.00
159 160 1.754226 GTTTTGACCAGTCTTTGCCCA 59.246 47.619 0.00 0.00 0.00 5.36
160 161 2.031870 AGTTTTGACCAGTCTTTGCCC 58.968 47.619 0.00 0.00 0.00 5.36
161 162 5.106277 GGTATAGTTTTGACCAGTCTTTGCC 60.106 44.000 0.00 0.00 33.16 4.52
162 163 5.472137 TGGTATAGTTTTGACCAGTCTTTGC 59.528 40.000 0.00 0.00 38.34 3.68
163 164 7.228706 ACTTGGTATAGTTTTGACCAGTCTTTG 59.771 37.037 0.00 0.00 43.91 2.77
164 165 7.287810 ACTTGGTATAGTTTTGACCAGTCTTT 58.712 34.615 0.00 0.00 43.91 2.52
165 166 6.838382 ACTTGGTATAGTTTTGACCAGTCTT 58.162 36.000 0.00 0.00 43.91 3.01
166 167 6.042781 TGACTTGGTATAGTTTTGACCAGTCT 59.957 38.462 16.55 0.00 43.91 3.24
167 168 6.228258 TGACTTGGTATAGTTTTGACCAGTC 58.772 40.000 12.20 12.20 43.91 3.51
168 169 6.182507 TGACTTGGTATAGTTTTGACCAGT 57.817 37.500 0.00 0.00 43.91 4.00
169 170 5.122396 GCTGACTTGGTATAGTTTTGACCAG 59.878 44.000 0.00 0.00 43.91 4.00
170 171 5.001232 GCTGACTTGGTATAGTTTTGACCA 58.999 41.667 0.00 0.00 41.52 4.02
171 172 5.001232 TGCTGACTTGGTATAGTTTTGACC 58.999 41.667 0.00 0.00 0.00 4.02
172 173 6.743575 ATGCTGACTTGGTATAGTTTTGAC 57.256 37.500 0.00 0.00 0.00 3.18
173 174 8.856153 TTTATGCTGACTTGGTATAGTTTTGA 57.144 30.769 0.00 0.00 0.00 2.69
174 175 9.906660 TTTTTATGCTGACTTGGTATAGTTTTG 57.093 29.630 0.00 0.00 0.00 2.44
175 176 9.908152 GTTTTTATGCTGACTTGGTATAGTTTT 57.092 29.630 0.00 0.00 0.00 2.43
176 177 8.520351 GGTTTTTATGCTGACTTGGTATAGTTT 58.480 33.333 0.00 0.00 0.00 2.66
177 178 7.668052 TGGTTTTTATGCTGACTTGGTATAGTT 59.332 33.333 0.00 0.00 0.00 2.24
178 179 7.120726 GTGGTTTTTATGCTGACTTGGTATAGT 59.879 37.037 0.00 0.00 0.00 2.12
179 180 7.336931 AGTGGTTTTTATGCTGACTTGGTATAG 59.663 37.037 0.00 0.00 0.00 1.31
180 181 7.172342 AGTGGTTTTTATGCTGACTTGGTATA 58.828 34.615 0.00 0.00 0.00 1.47
181 182 6.010219 AGTGGTTTTTATGCTGACTTGGTAT 58.990 36.000 0.00 0.00 0.00 2.73
182 183 5.381757 AGTGGTTTTTATGCTGACTTGGTA 58.618 37.500 0.00 0.00 0.00 3.25
183 184 4.215109 AGTGGTTTTTATGCTGACTTGGT 58.785 39.130 0.00 0.00 0.00 3.67
184 185 4.853924 AGTGGTTTTTATGCTGACTTGG 57.146 40.909 0.00 0.00 0.00 3.61
185 186 6.534793 ACAAAAGTGGTTTTTATGCTGACTTG 59.465 34.615 0.00 0.00 36.87 3.16
186 187 6.639563 ACAAAAGTGGTTTTTATGCTGACTT 58.360 32.000 0.00 0.00 36.87 3.01
187 188 6.220726 ACAAAAGTGGTTTTTATGCTGACT 57.779 33.333 0.00 0.00 36.87 3.41
188 189 6.533367 TCAACAAAAGTGGTTTTTATGCTGAC 59.467 34.615 0.00 0.00 36.87 3.51
189 190 6.634805 TCAACAAAAGTGGTTTTTATGCTGA 58.365 32.000 0.00 0.00 36.87 4.26
190 191 6.756074 TCTCAACAAAAGTGGTTTTTATGCTG 59.244 34.615 0.00 0.00 36.87 4.41
191 192 6.872920 TCTCAACAAAAGTGGTTTTTATGCT 58.127 32.000 0.00 0.00 36.87 3.79
192 193 7.713764 ATCTCAACAAAAGTGGTTTTTATGC 57.286 32.000 0.00 0.00 36.87 3.14
195 196 8.846211 CCTCTATCTCAACAAAAGTGGTTTTTA 58.154 33.333 0.00 0.00 36.87 1.52
196 197 7.559897 TCCTCTATCTCAACAAAAGTGGTTTTT 59.440 33.333 0.00 0.00 39.55 1.94
197 198 7.013369 GTCCTCTATCTCAACAAAAGTGGTTTT 59.987 37.037 0.00 0.00 36.22 2.43
198 199 6.486993 GTCCTCTATCTCAACAAAAGTGGTTT 59.513 38.462 0.00 0.00 0.00 3.27
199 200 5.998363 GTCCTCTATCTCAACAAAAGTGGTT 59.002 40.000 0.00 0.00 0.00 3.67
200 201 5.308237 AGTCCTCTATCTCAACAAAAGTGGT 59.692 40.000 0.00 0.00 0.00 4.16
201 202 5.799213 AGTCCTCTATCTCAACAAAAGTGG 58.201 41.667 0.00 0.00 0.00 4.00
202 203 8.713271 GTTTAGTCCTCTATCTCAACAAAAGTG 58.287 37.037 0.00 0.00 0.00 3.16
203 204 8.652290 AGTTTAGTCCTCTATCTCAACAAAAGT 58.348 33.333 0.00 0.00 0.00 2.66
208 209 9.475620 TGATTAGTTTAGTCCTCTATCTCAACA 57.524 33.333 0.00 0.00 0.00 3.33
209 210 9.959749 CTGATTAGTTTAGTCCTCTATCTCAAC 57.040 37.037 0.00 0.00 0.00 3.18
210 211 9.137459 CCTGATTAGTTTAGTCCTCTATCTCAA 57.863 37.037 0.00 0.00 0.00 3.02
211 212 8.282982 ACCTGATTAGTTTAGTCCTCTATCTCA 58.717 37.037 0.00 0.00 0.00 3.27
212 213 8.700439 ACCTGATTAGTTTAGTCCTCTATCTC 57.300 38.462 0.00 0.00 0.00 2.75
213 214 9.495382 AAACCTGATTAGTTTAGTCCTCTATCT 57.505 33.333 0.00 0.00 35.71 1.98
227 228 9.515226 TGCTTCAACTATTTAAACCTGATTAGT 57.485 29.630 0.00 0.00 0.00 2.24
228 229 9.774742 GTGCTTCAACTATTTAAACCTGATTAG 57.225 33.333 0.00 0.00 0.00 1.73
229 230 8.736244 GGTGCTTCAACTATTTAAACCTGATTA 58.264 33.333 0.00 0.00 0.00 1.75
230 231 7.232534 TGGTGCTTCAACTATTTAAACCTGATT 59.767 33.333 0.00 0.00 0.00 2.57
231 232 6.719370 TGGTGCTTCAACTATTTAAACCTGAT 59.281 34.615 0.00 0.00 0.00 2.90
232 233 6.065374 TGGTGCTTCAACTATTTAAACCTGA 58.935 36.000 0.00 0.00 0.00 3.86
233 234 6.325919 TGGTGCTTCAACTATTTAAACCTG 57.674 37.500 0.00 0.00 0.00 4.00
234 235 6.969993 TTGGTGCTTCAACTATTTAAACCT 57.030 33.333 0.00 0.00 0.00 3.50
235 236 7.602753 AGATTGGTGCTTCAACTATTTAAACC 58.397 34.615 0.00 0.00 0.00 3.27
236 237 9.476202 AAAGATTGGTGCTTCAACTATTTAAAC 57.524 29.630 0.00 0.00 0.00 2.01
240 241 8.184192 CGATAAAGATTGGTGCTTCAACTATTT 58.816 33.333 0.00 0.00 0.00 1.40
241 242 7.552687 TCGATAAAGATTGGTGCTTCAACTATT 59.447 33.333 0.00 0.00 0.00 1.73
242 243 7.047891 TCGATAAAGATTGGTGCTTCAACTAT 58.952 34.615 0.00 0.00 0.00 2.12
243 244 6.403049 TCGATAAAGATTGGTGCTTCAACTA 58.597 36.000 0.00 0.00 0.00 2.24
244 245 5.245531 TCGATAAAGATTGGTGCTTCAACT 58.754 37.500 0.00 0.00 0.00 3.16
245 246 5.545658 TCGATAAAGATTGGTGCTTCAAC 57.454 39.130 0.00 0.00 0.00 3.18
246 247 6.757897 AATCGATAAAGATTGGTGCTTCAA 57.242 33.333 0.00 0.00 39.19 2.69
247 248 6.757897 AAATCGATAAAGATTGGTGCTTCA 57.242 33.333 0.00 0.00 40.39 3.02
248 249 9.567848 TTTAAAATCGATAAAGATTGGTGCTTC 57.432 29.630 0.00 0.00 40.39 3.86
249 250 9.573133 CTTTAAAATCGATAAAGATTGGTGCTT 57.427 29.630 11.99 0.00 40.98 3.91
250 251 8.739972 ACTTTAAAATCGATAAAGATTGGTGCT 58.260 29.630 20.67 0.00 40.98 4.40
251 252 8.911247 ACTTTAAAATCGATAAAGATTGGTGC 57.089 30.769 20.67 0.00 40.98 5.01
259 260 9.556030 GGTCCTTCAACTTTAAAATCGATAAAG 57.444 33.333 14.71 14.71 43.04 1.85
260 261 9.069082 TGGTCCTTCAACTTTAAAATCGATAAA 57.931 29.630 0.00 0.00 0.00 1.40
261 262 8.624367 TGGTCCTTCAACTTTAAAATCGATAA 57.376 30.769 0.00 0.00 0.00 1.75
262 263 8.801882 ATGGTCCTTCAACTTTAAAATCGATA 57.198 30.769 0.00 0.00 0.00 2.92
263 264 7.703058 ATGGTCCTTCAACTTTAAAATCGAT 57.297 32.000 0.00 0.00 0.00 3.59
264 265 7.519032 AATGGTCCTTCAACTTTAAAATCGA 57.481 32.000 0.00 0.00 0.00 3.59
265 266 8.082242 AGAAATGGTCCTTCAACTTTAAAATCG 58.918 33.333 0.00 0.00 0.00 3.34
323 324 9.689501 TCACTTCTTTTTCTAAAGGGAAAAGTA 57.310 29.630 8.42 0.52 43.22 2.24
324 325 8.589701 TCACTTCTTTTTCTAAAGGGAAAAGT 57.410 30.769 8.42 0.00 43.22 2.66
326 327 9.816354 CATTCACTTCTTTTTCTAAAGGGAAAA 57.184 29.630 3.42 0.00 43.50 2.29
327 328 9.196139 TCATTCACTTCTTTTTCTAAAGGGAAA 57.804 29.630 3.42 0.00 43.50 3.13
328 329 8.630037 GTCATTCACTTCTTTTTCTAAAGGGAA 58.370 33.333 1.90 1.90 44.16 3.97
329 330 7.041372 CGTCATTCACTTCTTTTTCTAAAGGGA 60.041 37.037 0.00 0.00 40.93 4.20
330 331 7.078228 CGTCATTCACTTCTTTTTCTAAAGGG 58.922 38.462 0.00 0.00 40.93 3.95
331 332 6.578919 GCGTCATTCACTTCTTTTTCTAAAGG 59.421 38.462 0.00 0.00 40.93 3.11
332 333 7.132213 TGCGTCATTCACTTCTTTTTCTAAAG 58.868 34.615 0.00 0.00 41.74 1.85
343 344 2.143122 TCCAACTGCGTCATTCACTTC 58.857 47.619 0.00 0.00 0.00 3.01
353 354 1.831106 TCTATCCACATCCAACTGCGT 59.169 47.619 0.00 0.00 0.00 5.24
383 384 1.800586 GACTTCATTCGCTGTCTTGCA 59.199 47.619 0.00 0.00 0.00 4.08
419 420 8.940768 TTTCCTTTTTCGTTTCTTTGATTGAT 57.059 26.923 0.00 0.00 0.00 2.57
440 446 2.879026 AGTTCCTCGAAGCTTGTTTTCC 59.121 45.455 2.10 0.00 0.00 3.13
441 447 3.304057 CCAGTTCCTCGAAGCTTGTTTTC 60.304 47.826 2.10 0.00 0.00 2.29
456 467 2.352805 CCTGCCCTGTCCAGTTCC 59.647 66.667 0.00 0.00 0.00 3.62
555 566 0.108424 AGCAGTAGCAGTAGCACAGC 60.108 55.000 0.00 0.00 45.49 4.40
557 568 1.132453 CGTAGCAGTAGCAGTAGCACA 59.868 52.381 0.00 0.00 45.49 4.57
573 584 1.527844 CCCTCCCGTAGTCCCGTAG 60.528 68.421 0.00 0.00 0.00 3.51
574 585 1.570857 TTCCCTCCCGTAGTCCCGTA 61.571 60.000 0.00 0.00 0.00 4.02
575 586 2.234246 ATTCCCTCCCGTAGTCCCGT 62.234 60.000 0.00 0.00 0.00 5.28
576 587 1.457079 ATTCCCTCCCGTAGTCCCG 60.457 63.158 0.00 0.00 0.00 5.14
577 588 0.398098 TGATTCCCTCCCGTAGTCCC 60.398 60.000 0.00 0.00 0.00 4.46
578 589 1.041437 CTGATTCCCTCCCGTAGTCC 58.959 60.000 0.00 0.00 0.00 3.85
579 590 1.682323 GACTGATTCCCTCCCGTAGTC 59.318 57.143 0.00 0.00 0.00 2.59
580 591 1.006758 TGACTGATTCCCTCCCGTAGT 59.993 52.381 0.00 0.00 0.00 2.73
625 641 6.587226 CGAGATCGAGTATACTAGTACTGCTT 59.413 42.308 5.09 0.00 43.02 3.91
643 659 1.164662 TCCTTACGCCCTCGAGATCG 61.165 60.000 15.71 18.20 39.41 3.69
645 661 1.481871 TTTCCTTACGCCCTCGAGAT 58.518 50.000 15.71 0.00 39.41 2.75
648 664 1.187974 TCATTTCCTTACGCCCTCGA 58.812 50.000 0.00 0.00 39.41 4.04
649 665 2.018542 TTCATTTCCTTACGCCCTCG 57.981 50.000 0.00 0.00 42.43 4.63
653 669 2.033424 GCTCCATTCATTTCCTTACGCC 59.967 50.000 0.00 0.00 0.00 5.68
654 670 2.945668 AGCTCCATTCATTTCCTTACGC 59.054 45.455 0.00 0.00 0.00 4.42
656 672 3.633986 CCCAGCTCCATTCATTTCCTTAC 59.366 47.826 0.00 0.00 0.00 2.34
674 695 4.133078 GCTTTCTATTCAGATCCACCCAG 58.867 47.826 0.00 0.00 0.00 4.45
727 748 0.110823 GTGGCTTGCGTCGTGTTTAG 60.111 55.000 0.00 0.00 0.00 1.85
801 834 5.651139 CCTGCCTCAACTACTACTACTGTTA 59.349 44.000 0.00 0.00 0.00 2.41
803 836 4.017808 CCTGCCTCAACTACTACTACTGT 58.982 47.826 0.00 0.00 0.00 3.55
804 837 4.270834 TCCTGCCTCAACTACTACTACTG 58.729 47.826 0.00 0.00 0.00 2.74
809 842 1.202313 CGCTCCTGCCTCAACTACTAC 60.202 57.143 0.00 0.00 35.36 2.73
824 857 2.863132 TCTATCTACTCTCCCGCTCC 57.137 55.000 0.00 0.00 0.00 4.70
825 858 4.010667 TCTTCTATCTACTCTCCCGCTC 57.989 50.000 0.00 0.00 0.00 5.03
826 859 4.440826 TTCTTCTATCTACTCTCCCGCT 57.559 45.455 0.00 0.00 0.00 5.52
827 860 5.715434 ATTTCTTCTATCTACTCTCCCGC 57.285 43.478 0.00 0.00 0.00 6.13
828 861 9.685828 CTTTTATTTCTTCTATCTACTCTCCCG 57.314 37.037 0.00 0.00 0.00 5.14
875 908 2.191354 CTCGTCGTCCTTGGCACGTA 62.191 60.000 0.00 0.00 38.45 3.57
876 909 3.553437 CTCGTCGTCCTTGGCACGT 62.553 63.158 0.00 0.00 38.45 4.49
926 986 1.527370 GATCCCTCCCCCTTTCACG 59.473 63.158 0.00 0.00 0.00 4.35
993 1060 1.884464 CTCCGCGTCCATGGTGATG 60.884 63.158 12.58 0.00 0.00 3.07
994 1061 2.501128 CTCCGCGTCCATGGTGAT 59.499 61.111 12.58 0.00 0.00 3.06
995 1062 3.770040 CCTCCGCGTCCATGGTGA 61.770 66.667 12.58 1.41 0.00 4.02
1065 1139 3.167414 CTTTTCCGGTGGGGGAGT 58.833 61.111 0.00 0.00 37.40 3.85
1093 1167 2.686816 CGGGTAGGCAGGCGTTTTG 61.687 63.158 0.00 0.00 0.00 2.44
1140 1214 2.740714 GATGTCGTGTTGAGCCGCC 61.741 63.158 0.00 0.00 0.00 6.13
1142 1216 0.943835 TGTGATGTCGTGTTGAGCCG 60.944 55.000 0.00 0.00 0.00 5.52
1143 1217 1.225855 TTGTGATGTCGTGTTGAGCC 58.774 50.000 0.00 0.00 0.00 4.70
1144 1218 3.187227 AGATTTGTGATGTCGTGTTGAGC 59.813 43.478 0.00 0.00 0.00 4.26
1147 1221 5.348418 AGAAGATTTGTGATGTCGTGTTG 57.652 39.130 0.00 0.00 0.00 3.33
1148 1222 5.760253 AGAAGAAGATTTGTGATGTCGTGTT 59.240 36.000 0.00 0.00 0.00 3.32
1149 1223 5.300752 AGAAGAAGATTTGTGATGTCGTGT 58.699 37.500 0.00 0.00 0.00 4.49
1150 1224 5.852738 AGAAGAAGATTTGTGATGTCGTG 57.147 39.130 0.00 0.00 0.00 4.35
1153 1237 8.770438 AGTAGAAGAAGAAGATTTGTGATGTC 57.230 34.615 0.00 0.00 0.00 3.06
1173 1257 3.181461 GCCGGTGGTAGTAGTAGAGTAGA 60.181 52.174 1.90 0.00 0.00 2.59
1175 1265 2.505407 TGCCGGTGGTAGTAGTAGAGTA 59.495 50.000 1.90 0.00 0.00 2.59
1178 1268 2.174210 AGATGCCGGTGGTAGTAGTAGA 59.826 50.000 1.90 0.00 0.00 2.59
1179 1269 2.553172 GAGATGCCGGTGGTAGTAGTAG 59.447 54.545 1.90 0.00 0.00 2.57
1180 1270 2.174210 AGAGATGCCGGTGGTAGTAGTA 59.826 50.000 1.90 0.00 0.00 1.82
1181 1271 1.063867 AGAGATGCCGGTGGTAGTAGT 60.064 52.381 1.90 0.00 0.00 2.73
1182 1272 1.609555 GAGAGATGCCGGTGGTAGTAG 59.390 57.143 1.90 0.00 0.00 2.57
1183 1273 1.688772 GAGAGATGCCGGTGGTAGTA 58.311 55.000 1.90 0.00 0.00 1.82
1184 1274 1.384989 CGAGAGATGCCGGTGGTAGT 61.385 60.000 1.90 0.00 0.00 2.73
1185 1275 1.360551 CGAGAGATGCCGGTGGTAG 59.639 63.158 1.90 0.00 0.00 3.18
1186 1276 2.782222 GCGAGAGATGCCGGTGGTA 61.782 63.158 1.90 0.00 0.00 3.25
1187 1277 4.148825 GCGAGAGATGCCGGTGGT 62.149 66.667 1.90 0.00 0.00 4.16
1189 1279 4.498520 ACGCGAGAGATGCCGGTG 62.499 66.667 15.93 0.00 0.00 4.94
1190 1280 4.194720 GACGCGAGAGATGCCGGT 62.195 66.667 15.93 0.00 0.00 5.28
1193 1283 4.854784 TGCGACGCGAGAGATGCC 62.855 66.667 15.93 0.00 0.00 4.40
1259 1349 1.134280 CCGGTGCTGAATCTGAATCCT 60.134 52.381 0.00 0.00 0.00 3.24
1262 1352 0.620556 ACCCGGTGCTGAATCTGAAT 59.379 50.000 0.00 0.00 0.00 2.57
1322 1412 3.254060 GTCGTGTGCATACAATGAGAGT 58.746 45.455 14.34 0.00 38.82 3.24
1323 1413 2.279921 CGTCGTGTGCATACAATGAGAG 59.720 50.000 14.34 0.00 38.82 3.20
1324 1414 2.258755 CGTCGTGTGCATACAATGAGA 58.741 47.619 14.34 0.00 38.82 3.27
1325 1415 1.267038 GCGTCGTGTGCATACAATGAG 60.267 52.381 14.34 1.38 38.82 2.90
1327 1417 0.721154 AGCGTCGTGTGCATACAATG 59.279 50.000 14.34 1.57 38.82 2.82
1328 1418 0.999406 GAGCGTCGTGTGCATACAAT 59.001 50.000 14.34 0.00 38.82 2.71
1336 1433 0.667487 AACAGGATGAGCGTCGTGTG 60.667 55.000 16.05 2.43 43.95 3.82
1367 1464 4.687215 AAGCAAGCCAGCGAGCGA 62.687 61.111 0.00 0.00 40.15 4.93
1397 1494 2.813179 GATCGGAATGTGCGCGCTT 61.813 57.895 33.29 18.89 0.00 4.68
1469 1566 1.959848 CGTCAGTGCAGAGGAGTGA 59.040 57.895 0.00 0.00 0.00 3.41
1520 1617 1.897225 GCTGGGCTGAGAGCTGAGAA 61.897 60.000 0.00 0.00 41.99 2.87
1533 1630 0.033109 ACCAATTTAGGGAGCTGGGC 60.033 55.000 0.00 0.00 0.00 5.36
1589 1686 2.100087 GTGGGCTTGAAACGAGGAAAAA 59.900 45.455 0.00 0.00 0.00 1.94
1590 1687 1.679153 GTGGGCTTGAAACGAGGAAAA 59.321 47.619 0.00 0.00 0.00 2.29
1591 1688 1.314730 GTGGGCTTGAAACGAGGAAA 58.685 50.000 0.00 0.00 0.00 3.13
1592 1689 0.882927 CGTGGGCTTGAAACGAGGAA 60.883 55.000 0.00 0.00 39.64 3.36
1593 1690 1.301401 CGTGGGCTTGAAACGAGGA 60.301 57.895 0.00 0.00 39.64 3.71
1594 1691 2.325082 CCGTGGGCTTGAAACGAGG 61.325 63.158 0.00 0.00 39.64 4.63
1595 1692 1.566018 GACCGTGGGCTTGAAACGAG 61.566 60.000 0.00 0.00 39.64 4.18
1596 1693 1.595929 GACCGTGGGCTTGAAACGA 60.596 57.895 0.00 0.00 39.64 3.85
1597 1694 1.597027 AGACCGTGGGCTTGAAACG 60.597 57.895 0.00 0.00 37.07 3.60
1598 1695 1.515521 CCAGACCGTGGGCTTGAAAC 61.516 60.000 0.00 0.00 43.63 2.78
1599 1696 1.228124 CCAGACCGTGGGCTTGAAA 60.228 57.895 0.00 0.00 43.63 2.69
1600 1697 2.429930 CCAGACCGTGGGCTTGAA 59.570 61.111 0.00 0.00 43.63 2.69
1608 1705 2.140717 GTTAAAGGTGACCAGACCGTG 58.859 52.381 3.63 0.00 41.35 4.94
1609 1706 2.044758 AGTTAAAGGTGACCAGACCGT 58.955 47.619 3.63 0.00 41.35 4.83
1610 1707 2.806244 CAAGTTAAAGGTGACCAGACCG 59.194 50.000 3.63 0.00 41.35 4.79
1611 1708 3.146847 CCAAGTTAAAGGTGACCAGACC 58.853 50.000 3.63 0.00 36.09 3.85
1612 1709 3.816994 ACCAAGTTAAAGGTGACCAGAC 58.183 45.455 3.63 0.00 36.60 3.51
1663 1760 1.246649 TGCCGTTGTGATTTGCTGAT 58.753 45.000 0.00 0.00 0.00 2.90
1760 1863 7.849804 ATGTTCATCACATAGTAGGTTTGTC 57.150 36.000 0.00 0.00 45.00 3.18
1795 1898 6.254589 TGAAAAGGAGTGTTAATTTTGTTGCG 59.745 34.615 0.00 0.00 0.00 4.85
1912 2015 2.063266 ACATTTGCAGCATTTGAAGCG 58.937 42.857 11.12 0.00 37.01 4.68
1924 2027 3.063316 CGTTCCATGTATCGACATTTGCA 59.937 43.478 0.00 0.00 44.18 4.08
1927 2030 2.612212 GCCGTTCCATGTATCGACATTT 59.388 45.455 0.00 0.00 44.18 2.32
1960 2063 3.766691 GCTCCAAGGACGGGCGTA 61.767 66.667 0.00 0.00 0.00 4.42
1972 2075 2.289382 TGTATCAGCAAGAAACGCTCCA 60.289 45.455 0.00 0.00 37.72 3.86
1978 2081 4.576463 CCCCAGTATGTATCAGCAAGAAAC 59.424 45.833 0.00 0.00 0.00 2.78
2073 2176 2.726821 TGGGCATAAAAGAGAGCAAGG 58.273 47.619 0.00 0.00 0.00 3.61
2109 2212 6.544928 TGAGGAGCTAAGAAATCACACATA 57.455 37.500 0.00 0.00 0.00 2.29
2125 2228 3.565482 TGTTGACAGACAAATTGAGGAGC 59.435 43.478 0.00 0.00 40.36 4.70
2167 2270 1.538204 GGAATGATCGCCGAAGCAGTA 60.538 52.381 0.00 0.00 39.83 2.74
2317 2420 4.040095 TCATCATACTGATCAGCTCCAAGG 59.960 45.833 22.83 6.81 34.28 3.61
2464 2567 2.804572 CGATGAGATGCCGAATCCAAGT 60.805 50.000 0.00 0.00 35.72 3.16
2593 2696 8.414003 ACCTCCACTTTTCTCTTTTTAAATGAC 58.586 33.333 0.00 0.00 0.00 3.06
2722 2825 1.475034 GCAGCCTTGGATTCCGTCATA 60.475 52.381 0.00 0.00 0.00 2.15
2727 2830 1.162800 GCTAGCAGCCTTGGATTCCG 61.163 60.000 10.63 0.00 34.48 4.30
2795 2900 5.332707 GGGAATTCTAGAAAACATGCGAAC 58.667 41.667 9.71 0.00 0.00 3.95
2799 2904 4.706962 AGTGGGGAATTCTAGAAAACATGC 59.293 41.667 9.71 1.98 0.00 4.06
2827 2932 4.265073 ACACCTTCCAGATGTCTATTTGC 58.735 43.478 0.00 0.00 0.00 3.68
3046 3186 7.039923 GGTTGATGAAGAGTACGATATAAGGGA 60.040 40.741 0.00 0.00 0.00 4.20
3066 3259 0.407918 AATCGGGGGTTGTGGTTGAT 59.592 50.000 0.00 0.00 0.00 2.57
3130 3323 1.347050 CTGGTAGATGAGATGGGGCTG 59.653 57.143 0.00 0.00 0.00 4.85
3244 3595 0.685097 TAATACCCGGCCTCTGCATC 59.315 55.000 0.00 0.00 40.13 3.91
3260 3611 2.714250 TGTGTGTGGAAAGGAGGGTAAT 59.286 45.455 0.00 0.00 0.00 1.89
3353 3712 6.267699 TCTTCACCACGAGTCCATGATTATAT 59.732 38.462 0.00 0.00 0.00 0.86
3418 3778 7.920160 TGTCAAAGTGCAGAATACATATTCA 57.080 32.000 12.90 0.00 43.43 2.57
3557 3989 2.687014 CGAGTCATAGGTCCTTGAGGGA 60.687 54.545 0.00 0.00 42.77 4.20
3697 4130 1.412710 AGCTTCTTCACGGTGAACTCA 59.587 47.619 19.07 4.14 32.21 3.41
3857 4290 1.282930 GGTCGAATTAGCCGGATCGC 61.283 60.000 5.05 3.21 35.39 4.58
3928 4361 2.143419 GGCAGGGTCCGGATGATCT 61.143 63.158 7.81 0.00 0.00 2.75
4055 4488 1.400530 GGATGATCCGGGTCCGAAGT 61.401 60.000 13.41 0.00 42.83 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.