Multiple sequence alignment - TraesCS1B01G212100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G212100 chr1B 100.000 4828 0 0 1 4828 385302320 385297493 0.000000e+00 8916.0
1 TraesCS1B01G212100 chr1B 88.710 62 7 0 1709 1770 164196905 164196966 5.180000e-10 76.8
2 TraesCS1B01G212100 chr1B 85.915 71 9 1 1654 1723 200683550 200683480 1.860000e-09 75.0
3 TraesCS1B01G212100 chr1A 96.280 1156 30 6 1920 3065 355347410 355346258 0.000000e+00 1884.0
4 TraesCS1B01G212100 chr1A 93.984 1147 34 9 3652 4772 355345606 355344469 0.000000e+00 1703.0
5 TraesCS1B01G212100 chr1A 93.200 1103 37 13 840 1920 355348529 355347443 0.000000e+00 1587.0
6 TraesCS1B01G212100 chr1A 94.788 307 13 1 3224 3530 355346268 355345965 4.370000e-130 475.0
7 TraesCS1B01G212100 chr1A 99.379 161 1 0 3063 3223 543931042 543930882 4.730000e-75 292.0
8 TraesCS1B01G212100 chr1D 92.745 1213 68 5 3635 4828 283619742 283618531 0.000000e+00 1735.0
9 TraesCS1B01G212100 chr1D 92.890 1097 52 15 840 1920 283622802 283621716 0.000000e+00 1570.0
10 TraesCS1B01G212100 chr1D 92.079 707 23 8 2368 3065 283621175 283620493 0.000000e+00 965.0
11 TraesCS1B01G212100 chr1D 93.217 457 29 2 1920 2374 283621683 283621227 0.000000e+00 671.0
12 TraesCS1B01G212100 chr1D 92.787 305 22 0 3224 3528 283620503 283620199 4.430000e-120 442.0
13 TraesCS1B01G212100 chr1D 86.364 66 9 0 1658 1723 308266431 308266496 6.700000e-09 73.1
14 TraesCS1B01G212100 chr6A 98.243 740 10 1 1 740 562521640 562522376 0.000000e+00 1291.0
15 TraesCS1B01G212100 chr6A 98.214 728 11 2 1 727 64561234 64561960 0.000000e+00 1271.0
16 TraesCS1B01G212100 chr3B 98.367 735 12 0 1 735 551504019 551503285 0.000000e+00 1291.0
17 TraesCS1B01G212100 chr3B 99.383 162 1 0 3063 3224 43724909 43724748 1.310000e-75 294.0
18 TraesCS1B01G212100 chr3B 85.572 201 26 3 2368 2567 452109408 452109606 1.760000e-49 207.0
19 TraesCS1B01G212100 chr3B 85.915 71 9 1 1654 1723 467807171 467807101 1.860000e-09 75.0
20 TraesCS1B01G212100 chr6B 98.493 730 11 0 1 730 633042409 633043138 0.000000e+00 1288.0
21 TraesCS1B01G212100 chr6B 97.003 734 19 2 1 734 653876073 653876803 0.000000e+00 1230.0
22 TraesCS1B01G212100 chr6B 98.780 164 2 0 3063 3226 227272771 227272934 4.730000e-75 292.0
23 TraesCS1B01G212100 chr6B 86.765 68 8 1 1703 1770 576931957 576932023 1.860000e-09 75.0
24 TraesCS1B01G212100 chr6B 100.000 28 0 0 4787 4814 11317286 11317259 9.000000e-03 52.8
25 TraesCS1B01G212100 chr5B 97.954 733 13 2 1 733 511705357 511706087 0.000000e+00 1269.0
26 TraesCS1B01G212100 chr5B 99.383 162 1 0 3063 3224 275239690 275239851 1.310000e-75 294.0
27 TraesCS1B01G212100 chr5B 99.379 161 1 0 3063 3223 419852899 419853059 4.730000e-75 292.0
28 TraesCS1B01G212100 chr5B 99.379 161 1 0 3063 3223 573807727 573807567 4.730000e-75 292.0
29 TraesCS1B01G212100 chr5B 99.379 161 1 0 3063 3223 654755900 654755740 4.730000e-75 292.0
30 TraesCS1B01G212100 chr3A 98.207 725 13 0 1 725 718867431 718866707 0.000000e+00 1267.0
31 TraesCS1B01G212100 chr2A 98.077 728 12 1 1 728 72965387 72964662 0.000000e+00 1266.0
32 TraesCS1B01G212100 chr2A 86.224 196 24 3 2368 2561 704690631 704690437 4.900000e-50 209.0
33 TraesCS1B01G212100 chr2A 85.644 202 26 3 2368 2567 733160121 733160321 4.900000e-50 209.0
34 TraesCS1B01G212100 chr2A 85.859 198 25 3 2368 2563 777014525 777014721 1.760000e-49 207.0
35 TraesCS1B01G212100 chr7B 98.317 713 12 0 1 713 619127386 619128098 0.000000e+00 1251.0
36 TraesCS1B01G212100 chr7B 99.383 162 1 0 3063 3224 700410897 700410736 1.310000e-75 294.0
37 TraesCS1B01G212100 chr7B 90.164 61 5 1 1654 1713 551430679 551430619 1.440000e-10 78.7
38 TraesCS1B01G212100 chr7B 85.915 71 8 2 1654 1723 482930865 482930796 1.860000e-09 75.0
39 TraesCS1B01G212100 chr2B 97.674 172 3 1 3063 3234 675339929 675339759 1.310000e-75 294.0
40 TraesCS1B01G212100 chr2B 90.769 65 6 0 1709 1773 220900005 220899941 2.390000e-13 87.9
41 TraesCS1B01G212100 chr4A 86.364 198 24 3 2368 2563 617657237 617657433 3.790000e-51 213.0
42 TraesCS1B01G212100 chr5D 85.859 198 27 1 2368 2564 136352044 136352241 4.900000e-50 209.0
43 TraesCS1B01G212100 chr5D 86.792 106 14 0 1658 1763 278628251 278628356 8.490000e-23 119.0
44 TraesCS1B01G212100 chr5D 84.685 111 14 2 1655 1764 121292976 121292868 1.840000e-19 108.0
45 TraesCS1B01G212100 chr7A 85.859 198 25 3 2368 2563 89977648 89977844 1.760000e-49 207.0
46 TraesCS1B01G212100 chrUn 88.710 62 7 0 1709 1770 235812486 235812547 5.180000e-10 76.8
47 TraesCS1B01G212100 chrUn 87.692 65 8 0 1709 1773 382475489 382475425 5.180000e-10 76.8
48 TraesCS1B01G212100 chr2D 100.000 28 0 0 4781 4808 160195525 160195552 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G212100 chr1B 385297493 385302320 4827 True 8916.00 8916 100.0000 1 4828 1 chr1B.!!$R2 4827
1 TraesCS1B01G212100 chr1A 355344469 355348529 4060 True 1412.25 1884 94.5630 840 4772 4 chr1A.!!$R2 3932
2 TraesCS1B01G212100 chr1D 283618531 283622802 4271 True 1076.60 1735 92.7436 840 4828 5 chr1D.!!$R1 3988
3 TraesCS1B01G212100 chr6A 562521640 562522376 736 False 1291.00 1291 98.2430 1 740 1 chr6A.!!$F2 739
4 TraesCS1B01G212100 chr6A 64561234 64561960 726 False 1271.00 1271 98.2140 1 727 1 chr6A.!!$F1 726
5 TraesCS1B01G212100 chr3B 551503285 551504019 734 True 1291.00 1291 98.3670 1 735 1 chr3B.!!$R3 734
6 TraesCS1B01G212100 chr6B 633042409 633043138 729 False 1288.00 1288 98.4930 1 730 1 chr6B.!!$F3 729
7 TraesCS1B01G212100 chr6B 653876073 653876803 730 False 1230.00 1230 97.0030 1 734 1 chr6B.!!$F4 733
8 TraesCS1B01G212100 chr5B 511705357 511706087 730 False 1269.00 1269 97.9540 1 733 1 chr5B.!!$F3 732
9 TraesCS1B01G212100 chr3A 718866707 718867431 724 True 1267.00 1267 98.2070 1 725 1 chr3A.!!$R1 724
10 TraesCS1B01G212100 chr2A 72964662 72965387 725 True 1266.00 1266 98.0770 1 728 1 chr2A.!!$R1 727
11 TraesCS1B01G212100 chr7B 619127386 619128098 712 False 1251.00 1251 98.3170 1 713 1 chr7B.!!$F1 712

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
937 940 0.108207 CAGATGAGAGGGGACATGGC 59.892 60.0 0.0 0.0 0.0 4.40 F
1504 1508 0.040067 CAGCTCCTTTTCCACAACGC 60.040 55.0 0.0 0.0 0.0 4.84 F
3102 3251 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.0 0.0 0.0 0.0 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2808 2956 0.520827 GTCGCGTGGAAGTCTAGTCG 60.521 60.0 5.77 0.0 0.00 4.18 R
3337 3489 0.036388 GACCTCCGCATTGACCTCAA 60.036 55.0 0.00 0.0 40.51 3.02 R
3944 4447 0.465705 GGCATCGGTGAAGAGATGGA 59.534 55.0 0.00 0.0 43.14 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
289 291 3.415087 GGCTGGAGCATCACCCCT 61.415 66.667 0.20 0.00 44.36 4.79
408 410 0.875474 CCAAACGCCAGCCAAAAGTG 60.875 55.000 0.00 0.00 0.00 3.16
468 470 1.078426 CAACCGATCTGGGGACACC 60.078 63.158 8.20 0.00 44.64 4.16
745 747 3.631046 GCGGCTGGGGAGGGATAG 61.631 72.222 0.00 0.00 0.00 2.08
746 748 2.201490 CGGCTGGGGAGGGATAGA 59.799 66.667 0.00 0.00 0.00 1.98
747 749 2.210711 CGGCTGGGGAGGGATAGAC 61.211 68.421 0.00 0.00 0.00 2.59
748 750 1.843832 GGCTGGGGAGGGATAGACC 60.844 68.421 0.00 0.00 38.08 3.85
749 751 1.074471 GCTGGGGAGGGATAGACCA 60.074 63.158 0.00 0.00 41.20 4.02
750 752 1.411651 GCTGGGGAGGGATAGACCAC 61.412 65.000 0.00 0.00 41.20 4.16
751 753 0.266152 CTGGGGAGGGATAGACCACT 59.734 60.000 0.00 0.00 41.20 4.00
752 754 0.264955 TGGGGAGGGATAGACCACTC 59.735 60.000 0.00 0.00 41.20 3.51
753 755 0.828343 GGGGAGGGATAGACCACTCG 60.828 65.000 0.00 0.00 41.20 4.18
754 756 1.465200 GGGAGGGATAGACCACTCGC 61.465 65.000 0.00 0.00 39.52 5.03
755 757 1.655329 GAGGGATAGACCACTCGCG 59.345 63.158 0.00 0.00 41.20 5.87
756 758 1.076923 AGGGATAGACCACTCGCGT 60.077 57.895 5.77 0.00 41.20 6.01
757 759 1.065928 GGGATAGACCACTCGCGTG 59.934 63.158 5.77 6.24 41.20 5.34
758 760 1.381928 GGGATAGACCACTCGCGTGA 61.382 60.000 16.04 0.00 43.97 4.35
759 761 3.270262 GGGATAGACCACTCGCGTGAG 62.270 61.905 23.98 23.98 43.97 3.51
760 762 1.015109 GATAGACCACTCGCGTGAGA 58.985 55.000 31.50 9.14 45.57 3.27
761 763 0.733729 ATAGACCACTCGCGTGAGAC 59.266 55.000 31.50 17.95 45.57 3.36
762 764 1.632948 TAGACCACTCGCGTGAGACG 61.633 60.000 31.50 21.17 45.57 4.18
763 765 3.948086 GACCACTCGCGTGAGACGG 62.948 68.421 31.50 28.68 45.57 4.79
764 766 3.733960 CCACTCGCGTGAGACGGA 61.734 66.667 31.50 0.00 45.57 4.69
765 767 2.485582 CACTCGCGTGAGACGGAT 59.514 61.111 31.50 6.60 45.57 4.18
766 768 1.583967 CACTCGCGTGAGACGGATC 60.584 63.158 31.50 0.00 45.57 3.36
767 769 1.745864 ACTCGCGTGAGACGGATCT 60.746 57.895 31.50 5.03 45.57 2.75
768 770 0.461516 ACTCGCGTGAGACGGATCTA 60.462 55.000 31.50 0.00 45.57 1.98
769 771 0.869068 CTCGCGTGAGACGGATCTAT 59.131 55.000 21.40 0.00 45.57 1.98
770 772 1.264557 CTCGCGTGAGACGGATCTATT 59.735 52.381 21.40 0.00 45.57 1.73
771 773 1.674441 TCGCGTGAGACGGATCTATTT 59.326 47.619 5.77 0.00 42.82 1.40
772 774 2.044860 CGCGTGAGACGGATCTATTTC 58.955 52.381 0.00 0.00 42.82 2.17
773 775 2.287069 CGCGTGAGACGGATCTATTTCT 60.287 50.000 0.00 0.00 42.82 2.52
774 776 3.707793 GCGTGAGACGGATCTATTTCTT 58.292 45.455 0.00 0.00 42.82 2.52
775 777 4.554134 CGCGTGAGACGGATCTATTTCTTA 60.554 45.833 0.00 0.00 42.82 2.10
776 778 5.279384 GCGTGAGACGGATCTATTTCTTAA 58.721 41.667 0.00 0.00 42.82 1.85
777 779 5.173492 GCGTGAGACGGATCTATTTCTTAAC 59.827 44.000 0.00 0.00 42.82 2.01
778 780 6.263344 CGTGAGACGGATCTATTTCTTAACA 58.737 40.000 0.00 0.00 38.08 2.41
779 781 6.750501 CGTGAGACGGATCTATTTCTTAACAA 59.249 38.462 0.00 0.00 38.08 2.83
780 782 7.435488 CGTGAGACGGATCTATTTCTTAACAAT 59.565 37.037 0.00 0.00 38.08 2.71
781 783 9.099454 GTGAGACGGATCTATTTCTTAACAATT 57.901 33.333 0.00 0.00 34.34 2.32
782 784 9.098355 TGAGACGGATCTATTTCTTAACAATTG 57.902 33.333 3.24 3.24 34.34 2.32
783 785 9.099454 GAGACGGATCTATTTCTTAACAATTGT 57.901 33.333 4.92 4.92 34.34 2.71
784 786 8.883731 AGACGGATCTATTTCTTAACAATTGTG 58.116 33.333 12.82 0.00 31.46 3.33
785 787 8.561738 ACGGATCTATTTCTTAACAATTGTGT 57.438 30.769 12.82 5.25 40.75 3.72
818 820 9.587461 AAAAACGATTGTGTTGTTAAGTTTTTG 57.413 25.926 12.79 0.00 43.96 2.44
819 821 7.876896 AACGATTGTGTTGTTAAGTTTTTGT 57.123 28.000 0.00 0.00 32.51 2.83
820 822 7.876896 ACGATTGTGTTGTTAAGTTTTTGTT 57.123 28.000 0.00 0.00 0.00 2.83
821 823 8.300495 ACGATTGTGTTGTTAAGTTTTTGTTT 57.700 26.923 0.00 0.00 0.00 2.83
822 824 8.766151 ACGATTGTGTTGTTAAGTTTTTGTTTT 58.234 25.926 0.00 0.00 0.00 2.43
823 825 9.587461 CGATTGTGTTGTTAAGTTTTTGTTTTT 57.413 25.926 0.00 0.00 0.00 1.94
920 923 1.478510 AGTACGCTCCAAGATGGACAG 59.521 52.381 0.00 0.00 42.67 3.51
922 925 1.198713 ACGCTCCAAGATGGACAGAT 58.801 50.000 0.00 0.00 42.67 2.90
923 926 1.134580 ACGCTCCAAGATGGACAGATG 60.135 52.381 0.00 0.00 42.67 2.90
924 927 1.137675 CGCTCCAAGATGGACAGATGA 59.862 52.381 0.00 0.00 42.67 2.92
928 931 3.036819 TCCAAGATGGACAGATGAGAGG 58.963 50.000 0.00 0.00 42.67 3.69
929 932 2.104451 CCAAGATGGACAGATGAGAGGG 59.896 54.545 0.00 0.00 40.96 4.30
930 933 2.100128 AGATGGACAGATGAGAGGGG 57.900 55.000 0.00 0.00 0.00 4.79
931 934 1.577729 AGATGGACAGATGAGAGGGGA 59.422 52.381 0.00 0.00 0.00 4.81
932 935 1.691434 GATGGACAGATGAGAGGGGAC 59.309 57.143 0.00 0.00 0.00 4.46
933 936 0.413434 TGGACAGATGAGAGGGGACA 59.587 55.000 0.00 0.00 0.00 4.02
934 937 1.008815 TGGACAGATGAGAGGGGACAT 59.991 52.381 0.00 0.00 0.00 3.06
935 938 1.415659 GGACAGATGAGAGGGGACATG 59.584 57.143 0.00 0.00 0.00 3.21
936 939 1.415659 GACAGATGAGAGGGGACATGG 59.584 57.143 0.00 0.00 0.00 3.66
937 940 0.108207 CAGATGAGAGGGGACATGGC 59.892 60.000 0.00 0.00 0.00 4.40
943 946 3.083997 AGGGGACATGGCGGAGAC 61.084 66.667 0.00 0.00 0.00 3.36
1061 1064 1.385206 GCTTCCTCTCCTCCCCCAT 60.385 63.158 0.00 0.00 0.00 4.00
1103 1106 4.439901 GCCCTCCCTCCCCTTCCT 62.440 72.222 0.00 0.00 0.00 3.36
1303 1306 1.540617 AAGGCCCCCTCGTAGGTTT 60.541 57.895 0.00 0.00 31.93 3.27
1313 1316 2.299297 CCTCGTAGGTTTCCAACTCACT 59.701 50.000 0.00 0.00 0.00 3.41
1320 1324 2.289756 GGTTTCCAACTCACTCTCCCTC 60.290 54.545 0.00 0.00 0.00 4.30
1323 1327 1.132849 TCCAACTCACTCTCCCTCCAA 60.133 52.381 0.00 0.00 0.00 3.53
1327 1331 1.228894 TCACTCTCCCTCCAACGCT 60.229 57.895 0.00 0.00 0.00 5.07
1504 1508 0.040067 CAGCTCCTTTTCCACAACGC 60.040 55.000 0.00 0.00 0.00 4.84
1570 1574 4.811969 TGATGACGGTACCAAACTATGT 57.188 40.909 13.54 0.00 0.00 2.29
1599 1603 7.109501 TCAATCTTACAAATGCTAACCTGCTA 58.890 34.615 0.00 0.00 0.00 3.49
1717 1723 5.110598 CAAAATGCCTAGCACATAATTGCA 58.889 37.500 0.00 0.00 45.62 4.08
1777 1804 5.352846 GGTGGCAAAACACACAACTATTTTT 59.647 36.000 0.00 0.00 43.08 1.94
1845 1884 4.083324 CGGATAACAGCTGCTTTTCTTTCA 60.083 41.667 15.27 0.00 0.00 2.69
1914 1953 6.082707 AGGGACCATCTTAGTAAATACGGAT 58.917 40.000 0.00 0.00 0.00 4.18
1961 2033 7.061210 CGAATTACTACTGCTGTATAGATGCAC 59.939 40.741 3.72 0.00 32.91 4.57
2028 2100 0.798776 CGCCTTTCAACGATTGCTCT 59.201 50.000 0.00 0.00 0.00 4.09
2236 2308 7.227992 TCGTAAAATTCAGCAAACCTTTTTG 57.772 32.000 0.00 0.00 44.42 2.44
2296 2369 6.263617 GTCTGTTTAACACCCCAAAGTATCAA 59.736 38.462 0.00 0.00 0.00 2.57
2553 2685 9.520515 AGTCCTATGAATTTCTTTTCTAGCAAA 57.479 29.630 0.00 0.00 0.00 3.68
2568 2700 5.407049 TCTAGCAAAGGAGCCCTAATCTAT 58.593 41.667 0.00 0.00 31.13 1.98
2673 2821 1.080569 GCACCGGTTTGGCAGATTG 60.081 57.895 2.97 0.00 43.94 2.67
2679 2827 1.545582 CGGTTTGGCAGATTGGACATT 59.454 47.619 0.00 0.00 0.00 2.71
2808 2956 1.941325 CATTAACTCGAGGAGGCACC 58.059 55.000 18.41 0.00 33.35 5.01
2810 2958 0.609957 TTAACTCGAGGAGGCACCGA 60.610 55.000 18.41 0.00 44.74 4.69
2890 3038 1.897137 AGTCCTCGAGTGTCGTGCA 60.897 57.895 12.31 0.00 41.35 4.57
2904 3052 3.990469 TGTCGTGCATTTTGTGTGTTTTT 59.010 34.783 0.00 0.00 0.00 1.94
2984 3133 4.568359 CGACCATTAGATGTCCTGAACAAG 59.432 45.833 0.00 0.00 42.37 3.16
3059 3208 7.271511 TGATTTGTTTTTGTTGCTGGAAGTAT 58.728 30.769 0.00 0.00 35.30 2.12
3060 3209 7.437862 TGATTTGTTTTTGTTGCTGGAAGTATC 59.562 33.333 0.00 0.00 35.30 2.24
3061 3210 5.195001 TGTTTTTGTTGCTGGAAGTATCC 57.805 39.130 0.00 0.00 46.76 2.59
3072 3221 3.538634 GGAAGTATCCGGTAAAGCTGT 57.461 47.619 0.00 0.00 35.59 4.40
3073 3222 3.870274 GGAAGTATCCGGTAAAGCTGTT 58.130 45.455 0.00 0.00 35.59 3.16
3074 3223 3.621715 GGAAGTATCCGGTAAAGCTGTTG 59.378 47.826 0.00 0.00 35.59 3.33
3075 3224 2.629051 AGTATCCGGTAAAGCTGTTGC 58.371 47.619 0.00 0.00 40.05 4.17
3076 3225 1.669265 GTATCCGGTAAAGCTGTTGCC 59.331 52.381 0.00 0.00 40.80 4.52
3077 3226 0.328258 ATCCGGTAAAGCTGTTGCCT 59.672 50.000 0.00 0.00 40.80 4.75
3078 3227 0.109723 TCCGGTAAAGCTGTTGCCTT 59.890 50.000 0.00 0.00 40.80 4.35
3079 3228 0.240945 CCGGTAAAGCTGTTGCCTTG 59.759 55.000 11.70 2.87 40.80 3.61
3080 3229 0.951558 CGGTAAAGCTGTTGCCTTGT 59.048 50.000 11.70 0.00 40.80 3.16
3081 3230 1.334960 CGGTAAAGCTGTTGCCTTGTG 60.335 52.381 11.70 0.00 40.80 3.33
3082 3231 1.953686 GGTAAAGCTGTTGCCTTGTGA 59.046 47.619 7.98 0.00 40.80 3.58
3083 3232 2.287608 GGTAAAGCTGTTGCCTTGTGAC 60.288 50.000 7.98 0.00 40.80 3.67
3084 3233 0.746659 AAAGCTGTTGCCTTGTGACC 59.253 50.000 0.00 0.00 40.80 4.02
3085 3234 0.395586 AAGCTGTTGCCTTGTGACCA 60.396 50.000 0.00 0.00 40.80 4.02
3086 3235 0.178981 AGCTGTTGCCTTGTGACCAT 60.179 50.000 0.00 0.00 40.80 3.55
3087 3236 0.038892 GCTGTTGCCTTGTGACCATG 60.039 55.000 0.00 0.00 0.00 3.66
3088 3237 1.608055 CTGTTGCCTTGTGACCATGA 58.392 50.000 0.00 0.00 0.00 3.07
3089 3238 1.538512 CTGTTGCCTTGTGACCATGAG 59.461 52.381 0.00 0.00 0.00 2.90
3090 3239 0.883833 GTTGCCTTGTGACCATGAGG 59.116 55.000 0.00 0.00 42.21 3.86
3100 3249 4.617875 CCATGAGGTCACGGGTTC 57.382 61.111 0.00 0.00 0.00 3.62
3101 3250 1.676968 CCATGAGGTCACGGGTTCA 59.323 57.895 0.00 0.00 0.00 3.18
3102 3251 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.000 0.00 0.00 0.00 2.69
3103 3252 1.442769 CATGAGGTCACGGGTTCAAG 58.557 55.000 0.00 0.00 0.00 3.02
3104 3253 1.056660 ATGAGGTCACGGGTTCAAGT 58.943 50.000 0.00 0.00 0.00 3.16
3105 3254 0.391597 TGAGGTCACGGGTTCAAGTC 59.608 55.000 0.00 0.00 0.00 3.01
3106 3255 0.320508 GAGGTCACGGGTTCAAGTCC 60.321 60.000 0.00 0.00 0.00 3.85
3107 3256 0.763223 AGGTCACGGGTTCAAGTCCT 60.763 55.000 0.00 0.00 0.00 3.85
3108 3257 0.602905 GGTCACGGGTTCAAGTCCTG 60.603 60.000 0.00 0.00 37.36 3.86
3109 3258 0.602905 GTCACGGGTTCAAGTCCTGG 60.603 60.000 0.00 0.00 35.79 4.45
3110 3259 0.761323 TCACGGGTTCAAGTCCTGGA 60.761 55.000 0.00 0.00 35.79 3.86
3111 3260 0.107831 CACGGGTTCAAGTCCTGGAA 59.892 55.000 0.00 0.00 35.79 3.53
3112 3261 0.841289 ACGGGTTCAAGTCCTGGAAA 59.159 50.000 0.00 0.00 35.79 3.13
3113 3262 1.235724 CGGGTTCAAGTCCTGGAAAC 58.764 55.000 0.00 0.00 0.00 2.78
3114 3263 1.476110 CGGGTTCAAGTCCTGGAAACA 60.476 52.381 0.00 0.00 32.36 2.83
3128 3277 4.431416 TGGAAACAGCCTCTTACAGAAA 57.569 40.909 0.00 0.00 35.01 2.52
3129 3278 4.985538 TGGAAACAGCCTCTTACAGAAAT 58.014 39.130 0.00 0.00 35.01 2.17
3130 3279 4.761739 TGGAAACAGCCTCTTACAGAAATG 59.238 41.667 0.00 0.00 35.01 2.32
3131 3280 4.762251 GGAAACAGCCTCTTACAGAAATGT 59.238 41.667 0.00 0.00 0.00 2.71
3132 3281 5.938125 GGAAACAGCCTCTTACAGAAATGTA 59.062 40.000 0.00 0.00 0.00 2.29
3133 3282 6.092807 GGAAACAGCCTCTTACAGAAATGTAG 59.907 42.308 0.00 0.00 0.00 2.74
3134 3283 5.091261 ACAGCCTCTTACAGAAATGTAGG 57.909 43.478 0.00 0.00 0.00 3.18
3135 3284 4.080863 ACAGCCTCTTACAGAAATGTAGGG 60.081 45.833 0.00 0.66 0.00 3.53
3136 3285 4.162320 CAGCCTCTTACAGAAATGTAGGGA 59.838 45.833 0.00 0.00 0.00 4.20
3137 3286 4.783227 AGCCTCTTACAGAAATGTAGGGAA 59.217 41.667 0.00 0.00 0.00 3.97
3138 3287 5.250774 AGCCTCTTACAGAAATGTAGGGAAA 59.749 40.000 0.00 0.00 0.00 3.13
3139 3288 5.586643 GCCTCTTACAGAAATGTAGGGAAAG 59.413 44.000 0.00 0.00 0.00 2.62
3140 3289 6.116126 CCTCTTACAGAAATGTAGGGAAAGG 58.884 44.000 0.00 0.00 0.00 3.11
3141 3290 5.497474 TCTTACAGAAATGTAGGGAAAGGC 58.503 41.667 0.00 0.00 0.00 4.35
3142 3291 5.250774 TCTTACAGAAATGTAGGGAAAGGCT 59.749 40.000 0.00 0.00 0.00 4.58
3143 3292 3.690460 ACAGAAATGTAGGGAAAGGCTG 58.310 45.455 0.00 0.00 0.00 4.85
3144 3293 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
3145 3294 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
3146 3295 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
3147 3296 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
3148 3297 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
3149 3298 0.535797 GTAGGGAAAGGCTGCGTACT 59.464 55.000 0.00 0.00 34.81 2.73
3150 3299 1.753073 GTAGGGAAAGGCTGCGTACTA 59.247 52.381 0.00 0.00 34.81 1.82
3151 3300 1.497161 AGGGAAAGGCTGCGTACTAT 58.503 50.000 0.00 0.00 0.00 2.12
3152 3301 2.674420 AGGGAAAGGCTGCGTACTATA 58.326 47.619 0.00 0.00 0.00 1.31
3153 3302 2.628657 AGGGAAAGGCTGCGTACTATAG 59.371 50.000 0.00 0.00 0.00 1.31
3154 3303 2.626743 GGGAAAGGCTGCGTACTATAGA 59.373 50.000 6.78 0.00 0.00 1.98
3155 3304 3.552478 GGGAAAGGCTGCGTACTATAGAC 60.552 52.174 6.78 0.00 0.00 2.59
3156 3305 3.552478 GGAAAGGCTGCGTACTATAGACC 60.552 52.174 6.78 0.00 0.00 3.85
3157 3306 1.618487 AGGCTGCGTACTATAGACCC 58.382 55.000 6.78 0.00 0.00 4.46
3158 3307 1.133575 AGGCTGCGTACTATAGACCCA 60.134 52.381 6.78 0.00 0.00 4.51
3159 3308 1.684983 GGCTGCGTACTATAGACCCAA 59.315 52.381 6.78 0.00 0.00 4.12
3160 3309 2.101917 GGCTGCGTACTATAGACCCAAA 59.898 50.000 6.78 0.00 0.00 3.28
3161 3310 3.381949 GCTGCGTACTATAGACCCAAAG 58.618 50.000 6.78 0.00 0.00 2.77
3162 3311 3.181478 GCTGCGTACTATAGACCCAAAGT 60.181 47.826 6.78 0.00 0.00 2.66
3163 3312 4.360563 CTGCGTACTATAGACCCAAAGTG 58.639 47.826 6.78 0.00 0.00 3.16
3164 3313 3.131577 TGCGTACTATAGACCCAAAGTGG 59.868 47.826 6.78 0.00 37.25 4.00
3165 3314 3.131755 GCGTACTATAGACCCAAAGTGGT 59.868 47.826 6.78 0.00 42.79 4.16
3170 3319 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
3171 3320 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
3172 3321 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
3173 3322 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
3174 3323 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
3175 3324 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
3176 3325 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
3177 3326 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
3178 3327 3.714001 GTGGTCGGACCCTTCCCC 61.714 72.222 23.81 0.00 38.99 4.81
3184 3333 4.735599 GGACCCTTCCCCGACCCT 62.736 72.222 0.00 0.00 35.57 4.34
3185 3334 3.400054 GACCCTTCCCCGACCCTG 61.400 72.222 0.00 0.00 0.00 4.45
3211 3360 2.203070 GGAGCTACATGCACCGGG 60.203 66.667 6.32 0.00 42.21 5.73
3212 3361 2.897350 GAGCTACATGCACCGGGC 60.897 66.667 6.32 7.25 45.94 6.13
3213 3362 3.391665 GAGCTACATGCACCGGGCT 62.392 63.158 6.32 0.81 45.94 5.19
3214 3363 3.204827 GCTACATGCACCGGGCTG 61.205 66.667 6.32 9.21 45.15 4.85
3215 3364 3.204827 CTACATGCACCGGGCTGC 61.205 66.667 6.32 8.50 45.15 5.25
3216 3365 4.794648 TACATGCACCGGGCTGCC 62.795 66.667 11.05 11.05 45.15 4.85
3222 3371 2.917227 CACCGGGCTGCCCTTTTT 60.917 61.111 33.39 13.23 42.67 1.94
3223 3372 1.605165 CACCGGGCTGCCCTTTTTA 60.605 57.895 33.39 0.00 42.67 1.52
3224 3373 1.154221 ACCGGGCTGCCCTTTTTAA 59.846 52.632 33.39 0.00 42.67 1.52
3225 3374 0.898326 ACCGGGCTGCCCTTTTTAAG 60.898 55.000 33.39 16.86 42.67 1.85
3226 3375 0.898326 CCGGGCTGCCCTTTTTAAGT 60.898 55.000 33.39 0.00 42.67 2.24
3227 3376 1.614850 CCGGGCTGCCCTTTTTAAGTA 60.615 52.381 33.39 0.00 42.67 2.24
3228 3377 2.375146 CGGGCTGCCCTTTTTAAGTAT 58.625 47.619 33.39 0.00 42.67 2.12
3240 3389 6.053005 CCTTTTTAAGTATCCGGTGCTATCA 58.947 40.000 0.00 0.00 0.00 2.15
3332 3484 2.745492 GCAGCCACAGAGTGCCTC 60.745 66.667 0.00 0.00 31.34 4.70
3333 3485 2.046507 CAGCCACAGAGTGCCTCC 60.047 66.667 0.00 0.00 31.34 4.30
3335 3487 1.845205 AGCCACAGAGTGCCTCCTT 60.845 57.895 0.00 0.00 31.34 3.36
3336 3488 1.673665 GCCACAGAGTGCCTCCTTG 60.674 63.158 0.00 0.00 31.34 3.61
3337 3489 1.757306 CCACAGAGTGCCTCCTTGT 59.243 57.895 0.00 0.00 31.34 3.16
3338 3490 0.109342 CCACAGAGTGCCTCCTTGTT 59.891 55.000 0.00 0.00 31.34 2.83
3395 3547 3.054361 GTGACAACTGATAGGGGTCCATT 60.054 47.826 0.00 0.00 0.00 3.16
3440 3592 0.689080 GAGATCACCTCCCTCCTGCA 60.689 60.000 0.00 0.00 35.87 4.41
3455 3607 2.125512 GCAGACGTAGGGCTGTGG 60.126 66.667 19.09 0.00 36.62 4.17
3486 3638 3.586430 CGGCATCCGTATCACATCA 57.414 52.632 0.00 0.00 42.73 3.07
3556 3736 7.735917 GGTATAATTACCCGGTTTTACTAGGT 58.264 38.462 0.00 0.00 41.91 3.08
3557 3737 8.210946 GGTATAATTACCCGGTTTTACTAGGTT 58.789 37.037 0.00 0.00 41.91 3.50
3558 3738 9.613428 GTATAATTACCCGGTTTTACTAGGTTT 57.387 33.333 0.00 0.00 31.89 3.27
3560 3740 6.822667 ATTACCCGGTTTTACTAGGTTTTG 57.177 37.500 0.00 0.00 31.89 2.44
3561 3741 3.489355 ACCCGGTTTTACTAGGTTTTGG 58.511 45.455 0.00 0.00 0.00 3.28
3562 3742 2.229543 CCCGGTTTTACTAGGTTTTGGC 59.770 50.000 0.00 0.00 0.00 4.52
3563 3743 3.151554 CCGGTTTTACTAGGTTTTGGCT 58.848 45.455 0.00 0.00 0.00 4.75
3564 3744 3.057806 CCGGTTTTACTAGGTTTTGGCTG 60.058 47.826 0.00 0.00 0.00 4.85
3565 3745 3.057806 CGGTTTTACTAGGTTTTGGCTGG 60.058 47.826 0.00 0.00 0.00 4.85
3566 3746 3.257375 GGTTTTACTAGGTTTTGGCTGGG 59.743 47.826 0.00 0.00 0.00 4.45
3567 3747 2.891191 TTACTAGGTTTTGGCTGGGG 57.109 50.000 0.00 0.00 0.00 4.96
3568 3748 0.996583 TACTAGGTTTTGGCTGGGGG 59.003 55.000 0.00 0.00 0.00 5.40
3569 3749 1.071909 ACTAGGTTTTGGCTGGGGGT 61.072 55.000 0.00 0.00 0.00 4.95
3570 3750 0.611896 CTAGGTTTTGGCTGGGGGTG 60.612 60.000 0.00 0.00 0.00 4.61
3571 3751 2.087857 TAGGTTTTGGCTGGGGGTGG 62.088 60.000 0.00 0.00 0.00 4.61
3572 3752 2.922503 GTTTTGGCTGGGGGTGGG 60.923 66.667 0.00 0.00 0.00 4.61
3573 3753 4.247130 TTTTGGCTGGGGGTGGGG 62.247 66.667 0.00 0.00 0.00 4.96
3619 3799 1.763968 GGGGGTAAACATCCTGAAGC 58.236 55.000 0.00 0.00 0.00 3.86
3620 3800 1.285078 GGGGGTAAACATCCTGAAGCT 59.715 52.381 0.00 0.00 0.00 3.74
3621 3801 2.369394 GGGGTAAACATCCTGAAGCTG 58.631 52.381 0.00 0.00 0.00 4.24
3622 3802 2.026262 GGGGTAAACATCCTGAAGCTGA 60.026 50.000 0.00 0.00 0.00 4.26
3623 3803 3.372025 GGGGTAAACATCCTGAAGCTGAT 60.372 47.826 0.00 0.00 0.00 2.90
3624 3804 4.141482 GGGGTAAACATCCTGAAGCTGATA 60.141 45.833 0.00 0.00 0.00 2.15
3625 3805 5.059833 GGGTAAACATCCTGAAGCTGATAG 58.940 45.833 0.00 0.00 0.00 2.08
3626 3806 5.396884 GGGTAAACATCCTGAAGCTGATAGT 60.397 44.000 0.00 0.00 0.00 2.12
3627 3807 6.116126 GGTAAACATCCTGAAGCTGATAGTT 58.884 40.000 0.00 0.00 0.00 2.24
3628 3808 6.599638 GGTAAACATCCTGAAGCTGATAGTTT 59.400 38.462 0.00 2.89 32.40 2.66
3629 3809 7.769044 GGTAAACATCCTGAAGCTGATAGTTTA 59.231 37.037 0.00 2.02 31.29 2.01
3630 3810 9.331282 GTAAACATCCTGAAGCTGATAGTTTAT 57.669 33.333 14.83 2.77 33.03 1.40
3631 3811 7.798596 AACATCCTGAAGCTGATAGTTTATG 57.201 36.000 0.00 0.00 0.00 1.90
3632 3812 7.129457 ACATCCTGAAGCTGATAGTTTATGA 57.871 36.000 0.00 0.00 0.00 2.15
3633 3813 6.989169 ACATCCTGAAGCTGATAGTTTATGAC 59.011 38.462 0.00 0.00 0.00 3.06
3682 4184 5.653330 TGGAGGTTCTGTCGTTGTACATATA 59.347 40.000 0.00 0.00 0.00 0.86
3683 4185 6.322969 TGGAGGTTCTGTCGTTGTACATATAT 59.677 38.462 0.00 0.00 0.00 0.86
3944 4447 4.339872 TTGCCATCAGATTTTTGTGCTT 57.660 36.364 0.00 0.00 0.00 3.91
3983 4486 7.692291 CGATGCCGATGATTATTTTATTGTACC 59.308 37.037 0.00 0.00 38.22 3.34
4127 4631 5.905331 TCCCTTATCCTAGCTTCAGATTCAA 59.095 40.000 0.00 0.00 0.00 2.69
4141 4645 5.250982 TCAGATTCAATGAGCTTCACATGT 58.749 37.500 0.00 0.00 0.00 3.21
4182 4686 7.150783 AGTTCAATTGTAGAAATTCAGAGGC 57.849 36.000 5.13 0.00 0.00 4.70
4184 4688 4.635765 TCAATTGTAGAAATTCAGAGGCCG 59.364 41.667 5.13 0.00 0.00 6.13
4216 4727 4.275689 TGCTGTGTTTTCTCGAATCACATT 59.724 37.500 14.00 0.00 36.12 2.71
4234 4761 5.126869 TCACATTGTTCTGTGGTTGTGATTT 59.873 36.000 4.54 0.00 45.29 2.17
4285 4812 1.810151 GGTAAACTTTCGGCTGCATGA 59.190 47.619 0.50 0.00 0.00 3.07
4597 5125 2.751806 CCTTTCAGCATGTTCCTCCTTC 59.248 50.000 0.00 0.00 37.40 3.46
4643 5171 3.818121 TTAACAGTGCGGCGTGGCT 62.818 57.895 9.37 1.06 0.00 4.75
4724 5252 9.956640 ATAGATCAAGAGATTCAGAAACAGTTT 57.043 29.630 0.00 0.00 33.72 2.66
4777 5305 6.239396 TCCGTCCCAAAATAAGTGTAAATCA 58.761 36.000 0.00 0.00 0.00 2.57
4779 5307 6.027749 CGTCCCAAAATAAGTGTAAATCAGC 58.972 40.000 0.00 0.00 0.00 4.26
4784 5312 6.523201 CCAAAATAAGTGTAAATCAGCGACAC 59.477 38.462 0.00 0.00 43.08 3.67
4813 5341 3.659195 TGGGACGGAGGGAGTATTAGATA 59.341 47.826 0.00 0.00 0.00 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
289 291 2.489329 GGATTGCAAGCTTGTTCTGCTA 59.511 45.455 26.55 10.90 40.22 3.49
408 410 1.967319 TGGTGTGTCTTTCAAGGAGC 58.033 50.000 0.00 0.00 0.00 4.70
468 470 0.671781 CGAAGGGCCTGTGAGAGTTG 60.672 60.000 6.92 0.00 0.00 3.16
749 751 0.461516 TAGATCCGTCTCACGCGAGT 60.462 55.000 15.93 0.00 40.91 4.18
750 752 0.869068 ATAGATCCGTCTCACGCGAG 59.131 55.000 15.93 4.59 40.91 5.03
751 753 1.306148 AATAGATCCGTCTCACGCGA 58.694 50.000 15.93 0.00 40.91 5.87
752 754 2.044860 GAAATAGATCCGTCTCACGCG 58.955 52.381 3.53 3.53 40.91 6.01
753 755 3.357166 AGAAATAGATCCGTCTCACGC 57.643 47.619 0.00 0.00 40.91 5.34
754 756 6.263344 TGTTAAGAAATAGATCCGTCTCACG 58.737 40.000 0.00 0.00 42.11 4.35
755 757 8.649973 ATTGTTAAGAAATAGATCCGTCTCAC 57.350 34.615 0.00 0.00 35.87 3.51
756 758 9.098355 CAATTGTTAAGAAATAGATCCGTCTCA 57.902 33.333 0.00 0.00 35.87 3.27
757 759 9.099454 ACAATTGTTAAGAAATAGATCCGTCTC 57.901 33.333 4.92 0.00 35.87 3.36
758 760 8.883731 CACAATTGTTAAGAAATAGATCCGTCT 58.116 33.333 8.77 0.00 38.52 4.18
759 761 8.665685 ACACAATTGTTAAGAAATAGATCCGTC 58.334 33.333 8.77 0.00 28.43 4.79
760 762 8.561738 ACACAATTGTTAAGAAATAGATCCGT 57.438 30.769 8.77 0.00 28.43 4.69
761 763 9.277565 CAACACAATTGTTAAGAAATAGATCCG 57.722 33.333 8.77 0.00 44.57 4.18
792 794 9.587461 CAAAAACTTAACAACACAATCGTTTTT 57.413 25.926 0.00 0.00 41.30 1.94
793 795 8.766151 ACAAAAACTTAACAACACAATCGTTTT 58.234 25.926 0.00 0.00 35.57 2.43
794 796 8.300495 ACAAAAACTTAACAACACAATCGTTT 57.700 26.923 0.00 0.00 0.00 3.60
795 797 7.876896 ACAAAAACTTAACAACACAATCGTT 57.123 28.000 0.00 0.00 0.00 3.85
796 798 7.876896 AACAAAAACTTAACAACACAATCGT 57.123 28.000 0.00 0.00 0.00 3.73
797 799 9.587461 AAAAACAAAAACTTAACAACACAATCG 57.413 25.926 0.00 0.00 0.00 3.34
821 823 4.261155 CCGCTCACAATCTTGTCTCAAAAA 60.261 41.667 0.00 0.00 39.91 1.94
822 824 3.250762 CCGCTCACAATCTTGTCTCAAAA 59.749 43.478 0.00 0.00 39.91 2.44
823 825 2.807967 CCGCTCACAATCTTGTCTCAAA 59.192 45.455 0.00 0.00 39.91 2.69
824 826 2.224281 ACCGCTCACAATCTTGTCTCAA 60.224 45.455 0.00 0.00 39.91 3.02
825 827 1.344438 ACCGCTCACAATCTTGTCTCA 59.656 47.619 0.00 0.00 39.91 3.27
826 828 1.728971 CACCGCTCACAATCTTGTCTC 59.271 52.381 0.00 0.00 39.91 3.36
827 829 1.070758 ACACCGCTCACAATCTTGTCT 59.929 47.619 0.00 0.00 39.91 3.41
828 830 1.195448 CACACCGCTCACAATCTTGTC 59.805 52.381 0.00 0.00 39.91 3.18
829 831 1.202639 TCACACCGCTCACAATCTTGT 60.203 47.619 0.00 0.00 43.36 3.16
830 832 1.511850 TCACACCGCTCACAATCTTG 58.488 50.000 0.00 0.00 0.00 3.02
831 833 2.254546 TTCACACCGCTCACAATCTT 57.745 45.000 0.00 0.00 0.00 2.40
832 834 2.254546 TTTCACACCGCTCACAATCT 57.745 45.000 0.00 0.00 0.00 2.40
833 835 2.414559 CCATTTCACACCGCTCACAATC 60.415 50.000 0.00 0.00 0.00 2.67
834 836 1.541147 CCATTTCACACCGCTCACAAT 59.459 47.619 0.00 0.00 0.00 2.71
835 837 0.950836 CCATTTCACACCGCTCACAA 59.049 50.000 0.00 0.00 0.00 3.33
836 838 0.888736 CCCATTTCACACCGCTCACA 60.889 55.000 0.00 0.00 0.00 3.58
837 839 1.875963 CCCATTTCACACCGCTCAC 59.124 57.895 0.00 0.00 0.00 3.51
838 840 1.971167 GCCCATTTCACACCGCTCA 60.971 57.895 0.00 0.00 0.00 4.26
842 844 2.993471 GCCAGCCCATTTCACACCG 61.993 63.158 0.00 0.00 0.00 4.94
880 883 0.679321 GAGAAGAAAGCCCAGCCCAG 60.679 60.000 0.00 0.00 0.00 4.45
892 895 3.154710 TCTTGGAGCGTACTGAGAAGAA 58.845 45.455 0.00 0.00 0.00 2.52
920 923 1.070445 CGCCATGTCCCCTCTCATC 59.930 63.158 0.00 0.00 0.00 2.92
922 925 3.083349 CCGCCATGTCCCCTCTCA 61.083 66.667 0.00 0.00 0.00 3.27
923 926 2.764128 TCCGCCATGTCCCCTCTC 60.764 66.667 0.00 0.00 0.00 3.20
924 927 2.765807 CTCCGCCATGTCCCCTCT 60.766 66.667 0.00 0.00 0.00 3.69
928 931 1.745489 GTTGTCTCCGCCATGTCCC 60.745 63.158 0.00 0.00 0.00 4.46
929 932 1.745489 GGTTGTCTCCGCCATGTCC 60.745 63.158 0.00 0.00 0.00 4.02
930 933 0.605319 TTGGTTGTCTCCGCCATGTC 60.605 55.000 0.00 0.00 31.71 3.06
931 934 0.179004 TTTGGTTGTCTCCGCCATGT 60.179 50.000 0.00 0.00 31.71 3.21
932 935 0.240945 GTTTGGTTGTCTCCGCCATG 59.759 55.000 0.00 0.00 31.71 3.66
933 936 0.110486 AGTTTGGTTGTCTCCGCCAT 59.890 50.000 0.00 0.00 31.71 4.40
934 937 0.817634 CAGTTTGGTTGTCTCCGCCA 60.818 55.000 0.00 0.00 0.00 5.69
935 938 0.534203 TCAGTTTGGTTGTCTCCGCC 60.534 55.000 0.00 0.00 0.00 6.13
936 939 1.305201 TTCAGTTTGGTTGTCTCCGC 58.695 50.000 0.00 0.00 0.00 5.54
937 940 2.032924 GGTTTCAGTTTGGTTGTCTCCG 59.967 50.000 0.00 0.00 0.00 4.63
943 946 3.004734 CAGCTAGGGTTTCAGTTTGGTTG 59.995 47.826 0.00 0.00 0.00 3.77
946 949 1.541588 GCAGCTAGGGTTTCAGTTTGG 59.458 52.381 0.00 0.00 0.00 3.28
1303 1306 0.487325 TGGAGGGAGAGTGAGTTGGA 59.513 55.000 0.00 0.00 0.00 3.53
1313 1316 0.251653 ACACTAGCGTTGGAGGGAGA 60.252 55.000 0.00 0.00 0.00 3.71
1320 1324 1.665679 CAGGCAATACACTAGCGTTGG 59.334 52.381 0.00 0.00 0.00 3.77
1323 1327 0.249120 TGCAGGCAATACACTAGCGT 59.751 50.000 0.00 0.00 0.00 5.07
1327 1331 4.842574 TCAGAAATGCAGGCAATACACTA 58.157 39.130 0.00 0.00 0.00 2.74
1464 1468 1.989165 CAACTAGCAGACGAAGAGCAC 59.011 52.381 0.00 0.00 0.00 4.40
1570 1574 8.514594 CAGGTTAGCATTTGTAAGATTGAAAGA 58.485 33.333 0.00 0.00 0.00 2.52
1599 1603 3.211963 GAAGGATTGCGGCGCCAT 61.212 61.111 30.82 24.92 0.00 4.40
1717 1723 3.805971 GTGACCAAAGTACACGCTTAAGT 59.194 43.478 4.02 0.00 0.00 2.24
1886 1925 3.675348 TTACTAAGATGGTCCCTCGGA 57.325 47.619 0.00 0.00 0.00 4.55
1961 2033 5.066117 CCATTCTGTGATTTGAGAGACATGG 59.934 44.000 0.00 0.00 0.00 3.66
2028 2100 9.078990 CAACTACACTTGGTATAGATAGATCCA 57.921 37.037 0.00 0.00 0.00 3.41
2261 2333 9.198475 TGGGGTGTTAAACAGACTTATTTAAAA 57.802 29.630 0.00 0.00 33.31 1.52
2263 2335 8.763984 TTGGGGTGTTAAACAGACTTATTTAA 57.236 30.769 0.00 0.00 0.00 1.52
2265 2337 7.343574 ACTTTGGGGTGTTAAACAGACTTATTT 59.656 33.333 0.00 0.00 0.00 1.40
2326 2399 8.886719 TGCATTTTGAATTCATGTTAAACAACA 58.113 25.926 9.40 3.89 37.05 3.33
2327 2400 9.372541 CTGCATTTTGAATTCATGTTAAACAAC 57.627 29.630 9.40 1.55 0.00 3.32
2331 2404 8.772705 GTTCCTGCATTTTGAATTCATGTTAAA 58.227 29.630 9.40 7.21 0.00 1.52
2673 2821 2.432444 TGACCGGATCAAACAATGTCC 58.568 47.619 9.46 0.00 33.02 4.02
2808 2956 0.520827 GTCGCGTGGAAGTCTAGTCG 60.521 60.000 5.77 0.00 0.00 4.18
2810 2958 1.500844 CGTCGCGTGGAAGTCTAGT 59.499 57.895 5.77 0.00 0.00 2.57
2890 3038 2.682352 GCCAGCCAAAAACACACAAAAT 59.318 40.909 0.00 0.00 0.00 1.82
2904 3052 3.070878 TGATCGATTATAGTTGCCAGCCA 59.929 43.478 0.00 0.00 0.00 4.75
3059 3208 0.109723 AAGGCAACAGCTTTACCGGA 59.890 50.000 9.46 0.00 41.41 5.14
3060 3209 0.240945 CAAGGCAACAGCTTTACCGG 59.759 55.000 0.00 0.00 41.41 5.28
3061 3210 0.951558 ACAAGGCAACAGCTTTACCG 59.048 50.000 0.00 0.00 41.41 4.02
3062 3211 1.953686 TCACAAGGCAACAGCTTTACC 59.046 47.619 0.00 0.00 41.41 2.85
3063 3212 2.287608 GGTCACAAGGCAACAGCTTTAC 60.288 50.000 0.00 0.00 41.41 2.01
3064 3213 1.953686 GGTCACAAGGCAACAGCTTTA 59.046 47.619 0.00 0.00 41.41 1.85
3065 3214 0.746659 GGTCACAAGGCAACAGCTTT 59.253 50.000 0.00 0.00 41.41 3.51
3066 3215 0.395586 TGGTCACAAGGCAACAGCTT 60.396 50.000 0.00 0.00 41.41 3.74
3067 3216 0.178981 ATGGTCACAAGGCAACAGCT 60.179 50.000 0.00 0.00 41.41 4.24
3068 3217 0.038892 CATGGTCACAAGGCAACAGC 60.039 55.000 0.00 0.00 41.41 4.40
3069 3218 1.538512 CTCATGGTCACAAGGCAACAG 59.461 52.381 0.00 0.00 41.41 3.16
3070 3219 1.608055 CTCATGGTCACAAGGCAACA 58.392 50.000 0.00 0.00 41.41 3.33
3071 3220 0.883833 CCTCATGGTCACAAGGCAAC 59.116 55.000 0.00 0.00 0.00 4.17
3072 3221 0.478072 ACCTCATGGTCACAAGGCAA 59.522 50.000 0.00 0.00 44.78 4.52
3073 3222 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
3084 3233 1.270839 ACTTGAACCCGTGACCTCATG 60.271 52.381 0.00 0.00 0.00 3.07
3085 3234 1.002087 GACTTGAACCCGTGACCTCAT 59.998 52.381 0.00 0.00 0.00 2.90
3086 3235 0.391597 GACTTGAACCCGTGACCTCA 59.608 55.000 0.00 0.00 0.00 3.86
3087 3236 0.320508 GGACTTGAACCCGTGACCTC 60.321 60.000 0.00 0.00 0.00 3.85
3088 3237 0.763223 AGGACTTGAACCCGTGACCT 60.763 55.000 0.00 0.00 0.00 3.85
3089 3238 0.602905 CAGGACTTGAACCCGTGACC 60.603 60.000 0.00 0.00 0.00 4.02
3090 3239 0.602905 CCAGGACTTGAACCCGTGAC 60.603 60.000 0.00 0.00 0.00 3.67
3091 3240 0.761323 TCCAGGACTTGAACCCGTGA 60.761 55.000 0.00 0.00 0.00 4.35
3092 3241 0.107831 TTCCAGGACTTGAACCCGTG 59.892 55.000 0.00 0.00 0.00 4.94
3093 3242 0.841289 TTTCCAGGACTTGAACCCGT 59.159 50.000 0.00 0.00 0.00 5.28
3094 3243 1.235724 GTTTCCAGGACTTGAACCCG 58.764 55.000 0.00 0.00 0.00 5.28
3095 3244 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
3096 3245 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
3097 3246 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
3098 3247 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
3099 3248 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
3100 3249 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
3101 3250 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
3102 3251 1.439543 AAGAGGCTGTTTCCAGGACT 58.560 50.000 0.00 0.00 39.22 3.85
3103 3252 2.038557 TGTAAGAGGCTGTTTCCAGGAC 59.961 50.000 0.90 0.00 39.22 3.85
3104 3253 2.303022 CTGTAAGAGGCTGTTTCCAGGA 59.697 50.000 0.90 0.00 35.89 3.86
3105 3254 2.303022 TCTGTAAGAGGCTGTTTCCAGG 59.697 50.000 17.71 5.83 38.67 4.45
3106 3255 3.685139 TCTGTAAGAGGCTGTTTCCAG 57.315 47.619 0.90 9.48 38.67 3.86
3118 3267 5.250774 AGCCTTTCCCTACATTTCTGTAAGA 59.749 40.000 0.00 0.00 44.68 2.10
3119 3268 5.355350 CAGCCTTTCCCTACATTTCTGTAAG 59.645 44.000 0.00 0.00 37.41 2.34
3120 3269 5.253330 CAGCCTTTCCCTACATTTCTGTAA 58.747 41.667 0.00 0.00 37.41 2.41
3121 3270 4.843728 CAGCCTTTCCCTACATTTCTGTA 58.156 43.478 0.00 0.00 36.79 2.74
3122 3271 3.690460 CAGCCTTTCCCTACATTTCTGT 58.310 45.455 0.00 0.00 39.49 3.41
3123 3272 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
3124 3273 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
3125 3274 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
3126 3275 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
3127 3276 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
3128 3277 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
3129 3278 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
3130 3279 0.535797 AGTACGCAGCCTTTCCCTAC 59.464 55.000 0.00 0.00 0.00 3.18
3131 3280 2.148446 TAGTACGCAGCCTTTCCCTA 57.852 50.000 0.00 0.00 0.00 3.53
3132 3281 1.497161 ATAGTACGCAGCCTTTCCCT 58.503 50.000 0.00 0.00 0.00 4.20
3133 3282 2.626743 TCTATAGTACGCAGCCTTTCCC 59.373 50.000 0.00 0.00 0.00 3.97
3134 3283 3.552478 GGTCTATAGTACGCAGCCTTTCC 60.552 52.174 0.00 0.00 0.00 3.13
3135 3284 3.552478 GGGTCTATAGTACGCAGCCTTTC 60.552 52.174 0.00 0.00 0.00 2.62
3136 3285 2.364647 GGGTCTATAGTACGCAGCCTTT 59.635 50.000 0.00 0.00 0.00 3.11
3137 3286 1.962100 GGGTCTATAGTACGCAGCCTT 59.038 52.381 0.00 0.00 0.00 4.35
3138 3287 1.133575 TGGGTCTATAGTACGCAGCCT 60.134 52.381 13.98 0.00 35.18 4.58
3139 3288 1.325355 TGGGTCTATAGTACGCAGCC 58.675 55.000 13.98 8.23 35.18 4.85
3140 3289 3.181478 ACTTTGGGTCTATAGTACGCAGC 60.181 47.826 16.00 2.07 40.36 5.25
3141 3290 4.360563 CACTTTGGGTCTATAGTACGCAG 58.639 47.826 16.00 11.29 40.36 5.18
3142 3291 3.131577 CCACTTTGGGTCTATAGTACGCA 59.868 47.826 13.98 13.98 37.94 5.24
3143 3292 3.131755 ACCACTTTGGGTCTATAGTACGC 59.868 47.826 0.00 6.13 43.37 4.42
3144 3293 4.996788 ACCACTTTGGGTCTATAGTACG 57.003 45.455 0.00 0.00 43.37 3.67
3154 3303 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
3155 3304 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
3156 3305 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
3157 3306 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
3158 3307 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
3159 3308 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
3160 3309 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
3161 3310 3.714001 GGGGAAGGGTCCGACCAC 61.714 72.222 19.43 8.70 46.04 4.16
3167 3316 4.735599 AGGGTCGGGGAAGGGTCC 62.736 72.222 0.00 0.00 44.10 4.46
3168 3317 3.400054 CAGGGTCGGGGAAGGGTC 61.400 72.222 0.00 0.00 0.00 4.46
3183 3332 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
3186 3335 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
3187 3336 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
3188 3337 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
3189 3338 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
3195 3344 2.897350 GCCCGGTGCATGTAGCTC 60.897 66.667 11.25 0.00 45.94 4.09
3196 3345 3.402681 AGCCCGGTGCATGTAGCT 61.403 61.111 15.92 4.82 45.94 3.32
3197 3346 3.204827 CAGCCCGGTGCATGTAGC 61.205 66.667 15.92 2.56 44.83 3.58
3198 3347 3.204827 GCAGCCCGGTGCATGTAG 61.205 66.667 13.70 0.91 43.41 2.74
3199 3348 4.794648 GGCAGCCCGGTGCATGTA 62.795 66.667 19.47 0.00 45.93 2.29
3209 3358 2.693591 GGATACTTAAAAAGGGCAGCCC 59.306 50.000 24.90 24.90 45.90 5.19
3210 3359 2.357952 CGGATACTTAAAAAGGGCAGCC 59.642 50.000 1.26 1.26 0.00 4.85
3211 3360 2.357952 CCGGATACTTAAAAAGGGCAGC 59.642 50.000 0.00 0.00 0.00 5.25
3212 3361 3.377172 CACCGGATACTTAAAAAGGGCAG 59.623 47.826 9.46 0.00 0.00 4.85
3213 3362 3.349022 CACCGGATACTTAAAAAGGGCA 58.651 45.455 9.46 0.00 0.00 5.36
3214 3363 2.098607 GCACCGGATACTTAAAAAGGGC 59.901 50.000 9.46 0.00 0.00 5.19
3215 3364 3.617284 AGCACCGGATACTTAAAAAGGG 58.383 45.455 9.46 0.00 0.00 3.95
3216 3365 6.053005 TGATAGCACCGGATACTTAAAAAGG 58.947 40.000 9.46 0.00 0.00 3.11
3217 3366 6.202954 CCTGATAGCACCGGATACTTAAAAAG 59.797 42.308 9.46 0.00 0.00 2.27
3218 3367 6.053005 CCTGATAGCACCGGATACTTAAAAA 58.947 40.000 9.46 0.00 0.00 1.94
3219 3368 5.454187 CCCTGATAGCACCGGATACTTAAAA 60.454 44.000 9.46 0.00 0.00 1.52
3220 3369 4.039973 CCCTGATAGCACCGGATACTTAAA 59.960 45.833 9.46 0.00 0.00 1.52
3221 3370 3.576982 CCCTGATAGCACCGGATACTTAA 59.423 47.826 9.46 0.00 0.00 1.85
3222 3371 3.162666 CCCTGATAGCACCGGATACTTA 58.837 50.000 9.46 0.00 0.00 2.24
3223 3372 1.971357 CCCTGATAGCACCGGATACTT 59.029 52.381 9.46 0.00 0.00 2.24
3224 3373 1.633774 CCCTGATAGCACCGGATACT 58.366 55.000 9.46 4.43 0.00 2.12
3225 3374 0.037232 GCCCTGATAGCACCGGATAC 60.037 60.000 9.46 0.00 0.00 2.24
3226 3375 0.178932 AGCCCTGATAGCACCGGATA 60.179 55.000 9.46 0.00 0.00 2.59
3227 3376 1.460305 AGCCCTGATAGCACCGGAT 60.460 57.895 9.46 0.00 0.00 4.18
3228 3377 2.041922 AGCCCTGATAGCACCGGA 60.042 61.111 9.46 0.00 0.00 5.14
3264 3413 6.402456 AACCTAGACTAACTCGTCTTTTGT 57.598 37.500 0.00 0.00 41.27 2.83
3333 3485 1.466167 CTCCGCATTGACCTCAACAAG 59.534 52.381 0.00 0.00 38.86 3.16
3335 3487 0.321564 CCTCCGCATTGACCTCAACA 60.322 55.000 0.00 0.00 38.86 3.33
3336 3488 0.321653 ACCTCCGCATTGACCTCAAC 60.322 55.000 0.00 0.00 38.86 3.18
3337 3489 0.036388 GACCTCCGCATTGACCTCAA 60.036 55.000 0.00 0.00 40.51 3.02
3338 3490 0.904865 AGACCTCCGCATTGACCTCA 60.905 55.000 0.00 0.00 0.00 3.86
3440 3592 1.682684 CTCCCACAGCCCTACGTCT 60.683 63.158 0.00 0.00 0.00 4.18
3486 3638 8.701895 AGCTCATCATCATTGAAAACCATAATT 58.298 29.630 0.00 0.00 34.96 1.40
3551 3731 0.611896 CACCCCCAGCCAAAACCTAG 60.612 60.000 0.00 0.00 0.00 3.02
3556 3736 4.247130 CCCCACCCCCAGCCAAAA 62.247 66.667 0.00 0.00 0.00 2.44
3600 3780 1.285078 AGCTTCAGGATGTTTACCCCC 59.715 52.381 0.00 0.00 37.40 5.40
3601 3781 2.026262 TCAGCTTCAGGATGTTTACCCC 60.026 50.000 0.00 0.00 37.40 4.95
3602 3782 3.350219 TCAGCTTCAGGATGTTTACCC 57.650 47.619 0.00 0.00 37.40 3.69
3603 3783 5.675538 ACTATCAGCTTCAGGATGTTTACC 58.324 41.667 0.00 0.00 37.40 2.85
3604 3784 7.617041 AAACTATCAGCTTCAGGATGTTTAC 57.383 36.000 0.00 0.00 37.40 2.01
3605 3785 9.330063 CATAAACTATCAGCTTCAGGATGTTTA 57.670 33.333 14.48 14.48 37.40 2.01
3606 3786 8.049117 TCATAAACTATCAGCTTCAGGATGTTT 58.951 33.333 12.45 12.45 37.40 2.83
3607 3787 7.497249 GTCATAAACTATCAGCTTCAGGATGTT 59.503 37.037 0.00 0.00 37.40 2.71
3608 3788 6.989169 GTCATAAACTATCAGCTTCAGGATGT 59.011 38.462 0.00 0.00 37.40 3.06
3609 3789 6.145209 CGTCATAAACTATCAGCTTCAGGATG 59.855 42.308 0.00 0.00 37.54 3.51
3610 3790 6.183360 ACGTCATAAACTATCAGCTTCAGGAT 60.183 38.462 0.00 0.00 0.00 3.24
3611 3791 5.127194 ACGTCATAAACTATCAGCTTCAGGA 59.873 40.000 0.00 0.00 0.00 3.86
3612 3792 5.352284 ACGTCATAAACTATCAGCTTCAGG 58.648 41.667 0.00 0.00 0.00 3.86
3613 3793 6.893958 AACGTCATAAACTATCAGCTTCAG 57.106 37.500 0.00 0.00 0.00 3.02
3614 3794 8.653338 GTTTAACGTCATAAACTATCAGCTTCA 58.347 33.333 13.26 0.00 40.80 3.02
3615 3795 7.839837 CGTTTAACGTCATAAACTATCAGCTTC 59.160 37.037 16.71 0.00 41.47 3.86
3616 3796 7.201496 CCGTTTAACGTCATAAACTATCAGCTT 60.201 37.037 16.39 0.00 41.47 3.74
3617 3797 6.255020 CCGTTTAACGTCATAAACTATCAGCT 59.745 38.462 16.39 0.00 41.47 4.24
3618 3798 6.254157 TCCGTTTAACGTCATAAACTATCAGC 59.746 38.462 16.39 0.00 41.47 4.26
3619 3799 7.487189 AGTCCGTTTAACGTCATAAACTATCAG 59.513 37.037 16.39 5.16 41.47 2.90
3620 3800 7.315142 AGTCCGTTTAACGTCATAAACTATCA 58.685 34.615 16.39 1.00 41.47 2.15
3621 3801 7.746526 AGTCCGTTTAACGTCATAAACTATC 57.253 36.000 16.39 9.15 41.47 2.08
3622 3802 9.638239 TTAAGTCCGTTTAACGTCATAAACTAT 57.362 29.630 16.39 5.35 41.47 2.12
3623 3803 8.911662 GTTAAGTCCGTTTAACGTCATAAACTA 58.088 33.333 16.39 6.19 41.47 2.24
3624 3804 7.653311 AGTTAAGTCCGTTTAACGTCATAAACT 59.347 33.333 16.39 15.17 44.40 2.66
3625 3805 7.787084 AGTTAAGTCCGTTTAACGTCATAAAC 58.213 34.615 16.39 13.45 44.40 2.01
3626 3806 7.148983 CGAGTTAAGTCCGTTTAACGTCATAAA 60.149 37.037 16.39 2.72 44.40 1.40
3627 3807 6.305399 CGAGTTAAGTCCGTTTAACGTCATAA 59.695 38.462 16.39 9.37 44.40 1.90
3628 3808 5.794945 CGAGTTAAGTCCGTTTAACGTCATA 59.205 40.000 16.39 4.19 44.40 2.15
3629 3809 4.618489 CGAGTTAAGTCCGTTTAACGTCAT 59.382 41.667 16.39 5.08 44.40 3.06
3630 3810 3.974401 CGAGTTAAGTCCGTTTAACGTCA 59.026 43.478 16.39 0.00 44.40 4.35
3631 3811 4.219033 TCGAGTTAAGTCCGTTTAACGTC 58.781 43.478 16.39 8.95 44.40 4.34
3632 3812 4.223320 TCGAGTTAAGTCCGTTTAACGT 57.777 40.909 16.39 0.16 44.40 3.99
3633 3813 5.794945 TGTATCGAGTTAAGTCCGTTTAACG 59.205 40.000 10.83 10.83 44.40 3.18
3944 4447 0.465705 GGCATCGGTGAAGAGATGGA 59.534 55.000 0.00 0.00 43.14 3.41
3983 4486 6.142818 TGTTTAGAAAACAAGTGGATGGTG 57.857 37.500 2.85 0.00 0.00 4.17
4080 4584 4.532521 ACATAGAGTTTCCTTACTGGCAGT 59.467 41.667 25.34 25.34 35.26 4.40
4127 4631 5.717078 AAACATTGACATGTGAAGCTCAT 57.283 34.783 1.15 0.00 43.34 2.90
4141 4645 4.531854 TGAACTCCAGGTCAAAACATTGA 58.468 39.130 0.00 0.00 0.00 2.57
4182 4686 0.732571 AACACAGCACAGAACAACGG 59.267 50.000 0.00 0.00 0.00 4.44
4184 4688 4.096732 AGAAAACACAGCACAGAACAAC 57.903 40.909 0.00 0.00 0.00 3.32
4216 4727 3.625853 TCCAAATCACAACCACAGAACA 58.374 40.909 0.00 0.00 0.00 3.18
4234 4761 3.907474 TGGTTTCACCAGTAAGATCTCCA 59.093 43.478 0.00 0.00 44.79 3.86
4270 4797 1.825090 TTCATCATGCAGCCGAAAGT 58.175 45.000 0.00 0.00 0.00 2.66
4285 4812 7.315142 CAGTTACCAGCAAATACAACATTCAT 58.685 34.615 0.00 0.00 0.00 2.57
4359 4886 6.404734 GCTCTTTATCCTTGGGTACACATTTG 60.405 42.308 0.00 0.00 0.00 2.32
4360 4887 5.652452 GCTCTTTATCCTTGGGTACACATTT 59.348 40.000 0.00 0.00 0.00 2.32
4391 4919 7.631717 AAAGAGAACTTTCTATATGGCCAAC 57.368 36.000 10.96 0.00 41.80 3.77
4466 4994 3.340928 TGATGAGACTGGACAATGCAAG 58.659 45.455 0.00 0.00 0.00 4.01
4643 5171 3.553904 TGATGATTGATGGCGAAATCCA 58.446 40.909 0.00 0.00 40.97 3.41
4724 5252 6.237901 TGGAGTAGTAGTTTACTAACACGGA 58.762 40.000 0.00 0.00 42.45 4.69
4777 5305 2.073816 CGTCCCAAAATTAGTGTCGCT 58.926 47.619 0.00 0.00 0.00 4.93
4779 5307 2.671396 CTCCGTCCCAAAATTAGTGTCG 59.329 50.000 0.00 0.00 0.00 4.35
4784 5312 2.238898 ACTCCCTCCGTCCCAAAATTAG 59.761 50.000 0.00 0.00 0.00 1.73
4786 5314 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
4791 5319 1.854939 TCTAATACTCCCTCCGTCCCA 59.145 52.381 0.00 0.00 0.00 4.37


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.