Multiple sequence alignment - TraesCS1B01G211300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G211300 chr1B 100.000 6120 0 0 1 6120 384341049 384334930 0.000000e+00 11302.0
1 TraesCS1B01G211300 chr1B 94.565 92 5 0 2193 2284 339035540 339035449 6.390000e-30 143.0
2 TraesCS1B01G211300 chr1B 97.727 44 1 0 652 695 384340359 384340316 6.580000e-10 76.8
3 TraesCS1B01G211300 chr1B 97.727 44 1 0 691 734 384340398 384340355 6.580000e-10 76.8
4 TraesCS1B01G211300 chr1D 95.064 1722 62 14 2284 3997 282957516 282955810 0.000000e+00 2687.0
5 TraesCS1B01G211300 chr1D 94.246 1512 53 22 697 2197 282959002 282957514 0.000000e+00 2279.0
6 TraesCS1B01G211300 chr1D 92.093 1467 62 25 4008 5430 282955768 282954312 0.000000e+00 2017.0
7 TraesCS1B01G211300 chr1D 89.590 586 32 13 5457 6041 282954312 282953755 0.000000e+00 717.0
8 TraesCS1B01G211300 chr1D 78.000 600 79 31 106 695 282959522 282958966 1.640000e-85 327.0
9 TraesCS1B01G211300 chr1A 91.473 1466 88 23 695 2139 354948705 354947256 0.000000e+00 1980.0
10 TraesCS1B01G211300 chr1A 91.433 1389 81 15 2286 3665 354947150 354945791 0.000000e+00 1871.0
11 TraesCS1B01G211300 chr1A 92.852 1301 68 11 4011 5295 354944894 354943603 0.000000e+00 1864.0
12 TraesCS1B01G211300 chr1A 92.247 632 31 6 5402 6031 354943531 354942916 0.000000e+00 880.0
13 TraesCS1B01G211300 chr1A 85.133 565 60 12 3446 3998 354945494 354944942 1.930000e-154 556.0
14 TraesCS1B01G211300 chr1A 82.103 447 49 19 267 695 354949099 354948666 2.710000e-93 353.0
15 TraesCS1B01G211300 chr1A 96.610 59 2 0 2137 2195 354947210 354947152 1.400000e-16 99.0
16 TraesCS1B01G211300 chr1A 100.000 41 0 0 5296 5336 354943576 354943536 6.580000e-10 76.8
17 TraesCS1B01G211300 chrUn 96.809 94 3 0 2193 2286 325544764 325544857 2.280000e-34 158.0
18 TraesCS1B01G211300 chrUn 96.809 94 3 0 2193 2286 325547860 325547953 2.280000e-34 158.0
19 TraesCS1B01G211300 chr7D 96.809 94 3 0 2193 2286 382095730 382095637 2.280000e-34 158.0
20 TraesCS1B01G211300 chr7D 96.809 94 3 0 2193 2286 626705264 626705357 2.280000e-34 158.0
21 TraesCS1B01G211300 chr7D 96.471 85 3 0 2193 2277 336508653 336508737 2.300000e-29 141.0
22 TraesCS1B01G211300 chr5B 93.878 98 5 1 2193 2290 34226964 34227060 4.940000e-31 147.0
23 TraesCS1B01G211300 chr5B 93.976 83 4 1 6039 6120 311186608 311186690 2.320000e-24 124.0
24 TraesCS1B01G211300 chr7A 97.561 82 2 0 6039 6120 708549586 708549505 2.300000e-29 141.0
25 TraesCS1B01G211300 chr7A 96.341 82 2 1 6040 6120 451990552 451990471 3.850000e-27 134.0
26 TraesCS1B01G211300 chr4D 96.471 85 3 0 2193 2277 123275412 123275328 2.300000e-29 141.0
27 TraesCS1B01G211300 chr3B 91.837 98 7 1 2193 2290 575858191 575858287 1.070000e-27 135.0
28 TraesCS1B01G211300 chr6A 96.341 82 2 1 6040 6120 36098802 36098721 3.850000e-27 134.0
29 TraesCS1B01G211300 chr5D 96.250 80 2 1 6042 6120 378907907 378907986 4.980000e-26 130.0
30 TraesCS1B01G211300 chr4B 96.250 80 2 1 6042 6120 604260288 604260367 4.980000e-26 130.0
31 TraesCS1B01G211300 chr2A 95.181 83 3 1 6039 6120 95819238 95819320 4.980000e-26 130.0
32 TraesCS1B01G211300 chr2A 94.048 84 4 1 6038 6120 19209464 19209547 6.440000e-25 126.0
33 TraesCS1B01G211300 chr7B 94.048 84 4 1 6038 6120 613263421 613263504 6.440000e-25 126.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G211300 chr1B 384334930 384341049 6119 True 3818.533333 11302 98.484667 1 6120 3 chr1B.!!$R2 6119
1 TraesCS1B01G211300 chr1D 282953755 282959522 5767 True 1605.400000 2687 89.798600 106 6041 5 chr1D.!!$R1 5935
2 TraesCS1B01G211300 chr1A 354942916 354949099 6183 True 959.975000 1980 91.481375 267 6031 8 chr1A.!!$R1 5764

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
879 917 0.110644 GAAGCGAAACGTGAAGGCTG 60.111 55.0 4.70 0.0 33.58 4.85 F
940 990 0.250770 AACGGAAGGAAGAAGGCACC 60.251 55.0 0.00 0.0 0.00 5.01 F
2244 2353 0.034337 TACACTGGAGCGTTTGTCCC 59.966 55.0 0.00 0.0 32.49 4.46 F
2248 2357 0.036010 CTGGAGCGTTTGTCCCATCT 60.036 55.0 0.00 0.0 32.49 2.90 F
2252 2361 0.108329 AGCGTTTGTCCCATCTACGG 60.108 55.0 0.00 0.0 33.17 4.02 F
2253 2362 0.108520 GCGTTTGTCCCATCTACGGA 60.109 55.0 0.00 0.0 33.17 4.69 F
2389 2498 0.187117 TTTGGAAGGGGTGACATGCA 59.813 50.0 0.00 0.0 0.00 3.96 F
2452 2563 0.318955 CTCCCCTTTTGCAGCAAACG 60.319 55.0 20.49 17.9 32.79 3.60 F
4291 4975 0.831307 ATCTGGAAGCCGTCTAACCC 59.169 55.0 0.00 0.0 0.00 4.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2225 2334 0.034337 GGGACAAACGCTCCAGTGTA 59.966 55.000 0.00 0.00 37.87 2.90 R
2370 2479 0.187117 TGCATGTCACCCCTTCCAAA 59.813 50.000 0.00 0.00 0.00 3.28 R
3860 4499 0.246360 TCCGTTCTCGTGCATGACAT 59.754 50.000 3.97 0.00 35.01 3.06 R
3861 4500 0.246360 ATCCGTTCTCGTGCATGACA 59.754 50.000 3.97 0.00 35.01 3.58 R
3863 4502 0.460109 CCATCCGTTCTCGTGCATGA 60.460 55.000 8.64 8.64 35.01 3.07 R
3877 4516 1.001641 AGTCTGCAACCAGCCATCC 60.002 57.895 0.00 0.00 44.83 3.51 R
4287 4971 1.172180 CCATCACTTGCACACGGGTT 61.172 55.000 0.00 0.00 0.00 4.11 R
4337 5021 1.844771 GCTGTGCTGTGCAATGTCGA 61.845 55.000 0.00 0.00 41.47 4.20 R
6097 6830 0.391263 CGTGGCCCTCCTTTGTACTC 60.391 60.000 0.00 0.00 0.00 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 4.222847 GAGGACCCGCCCACGATC 62.223 72.222 0.00 0.00 43.93 3.69
66 67 4.530857 GGACCCGCCCACGATCAG 62.531 72.222 0.00 0.00 43.93 2.90
67 68 3.458163 GACCCGCCCACGATCAGA 61.458 66.667 0.00 0.00 43.93 3.27
68 69 3.432051 GACCCGCCCACGATCAGAG 62.432 68.421 0.00 0.00 43.93 3.35
69 70 3.147595 CCCGCCCACGATCAGAGA 61.148 66.667 0.00 0.00 43.93 3.10
70 71 2.105128 CCGCCCACGATCAGAGAC 59.895 66.667 0.00 0.00 43.93 3.36
71 72 2.105128 CGCCCACGATCAGAGACC 59.895 66.667 0.00 0.00 43.93 3.85
72 73 2.501610 GCCCACGATCAGAGACCC 59.498 66.667 0.00 0.00 0.00 4.46
73 74 2.808315 CCCACGATCAGAGACCCG 59.192 66.667 0.00 0.00 0.00 5.28
74 75 2.105128 CCACGATCAGAGACCCGC 59.895 66.667 0.00 0.00 0.00 6.13
75 76 2.105128 CACGATCAGAGACCCGCC 59.895 66.667 0.00 0.00 0.00 6.13
76 77 3.518998 ACGATCAGAGACCCGCCG 61.519 66.667 0.00 0.00 0.00 6.46
77 78 4.933064 CGATCAGAGACCCGCCGC 62.933 72.222 0.00 0.00 0.00 6.53
78 79 3.532155 GATCAGAGACCCGCCGCT 61.532 66.667 0.00 0.00 0.00 5.52
79 80 3.781770 GATCAGAGACCCGCCGCTG 62.782 68.421 0.00 0.00 35.67 5.18
94 95 4.729918 CTGGAGGCAGCCACCACC 62.730 72.222 25.73 16.51 39.27 4.61
160 161 2.105128 CCGCCTGTCGACCAGATC 59.895 66.667 14.12 5.41 44.49 2.75
210 211 2.976350 ATGCAGCCCATCGCGATG 60.976 61.111 36.28 36.28 44.76 3.84
214 215 4.166888 AGCCCATCGCGATGCAGT 62.167 61.111 37.48 22.79 44.76 4.40
217 218 1.522355 CCCATCGCGATGCAGTCTT 60.522 57.895 37.48 6.13 37.49 3.01
219 220 1.493950 CCATCGCGATGCAGTCTTCC 61.494 60.000 37.48 0.00 37.49 3.46
220 221 1.227380 ATCGCGATGCAGTCTTCCC 60.227 57.895 23.04 0.00 0.00 3.97
221 222 2.960957 ATCGCGATGCAGTCTTCCCG 62.961 60.000 23.04 0.00 0.00 5.14
225 226 1.901085 GATGCAGTCTTCCCGGTCT 59.099 57.895 0.00 0.00 0.00 3.85
226 227 0.460987 GATGCAGTCTTCCCGGTCTG 60.461 60.000 0.00 2.22 0.00 3.51
256 260 3.357079 GGCACCGCCTTCACACAG 61.357 66.667 0.00 0.00 46.69 3.66
257 261 3.357079 GCACCGCCTTCACACAGG 61.357 66.667 0.00 0.00 36.95 4.00
259 263 1.669115 CACCGCCTTCACACAGGAG 60.669 63.158 0.00 0.00 35.71 3.69
260 264 2.140792 ACCGCCTTCACACAGGAGT 61.141 57.895 0.00 0.00 35.71 3.85
277 281 2.356913 TGACGTCACGCCATGGTG 60.357 61.111 23.88 23.88 39.29 4.17
327 333 3.644399 GACCAGACGTCGAAGCCCC 62.644 68.421 10.46 0.00 0.00 5.80
354 360 2.202892 GAGGACGCTAAAGCCCCG 60.203 66.667 0.00 0.00 37.91 5.73
356 362 2.046604 GGACGCTAAAGCCCCGTT 60.047 61.111 0.00 0.00 37.91 4.44
357 363 2.396157 GGACGCTAAAGCCCCGTTG 61.396 63.158 0.00 0.00 37.91 4.10
358 364 2.359478 ACGCTAAAGCCCCGTTGG 60.359 61.111 0.00 0.00 37.91 3.77
359 365 2.046700 CGCTAAAGCCCCGTTGGA 60.047 61.111 0.00 0.00 37.91 3.53
364 370 2.175035 TAAAGCCCCGTTGGAGTCGG 62.175 60.000 0.00 0.00 46.49 4.79
367 373 3.622826 CCCCGTTGGAGTCGGTGT 61.623 66.667 3.78 0.00 45.63 4.16
368 374 2.424302 CCCGTTGGAGTCGGTGTT 59.576 61.111 3.78 0.00 45.63 3.32
408 416 3.006728 CCCCCTAGCGGTGGTGAA 61.007 66.667 0.00 0.00 0.00 3.18
540 549 2.825861 AAGCCAATGTTTGAAGCAGG 57.174 45.000 0.00 0.00 0.00 4.85
541 550 0.319405 AGCCAATGTTTGAAGCAGGC 59.681 50.000 4.49 4.49 40.85 4.85
543 552 0.388907 CCAATGTTTGAAGCAGGCGG 60.389 55.000 0.00 0.00 0.00 6.13
544 553 0.314935 CAATGTTTGAAGCAGGCGGT 59.685 50.000 0.00 0.00 0.00 5.68
550 565 0.676466 TTGAAGCAGGCGGTGTATGG 60.676 55.000 0.00 0.00 0.00 2.74
590 608 1.806542 GACGTGATCAAGCCACACATT 59.193 47.619 8.68 0.00 34.36 2.71
625 643 0.314302 AGGACGAGACGTGGTTCAAG 59.686 55.000 0.00 0.00 41.37 3.02
648 675 7.179076 AGATGGCATTAGCATTTTCTTTCTT 57.821 32.000 0.00 0.00 44.61 2.52
649 676 7.618137 AGATGGCATTAGCATTTTCTTTCTTT 58.382 30.769 0.00 0.00 44.61 2.52
650 677 8.752187 AGATGGCATTAGCATTTTCTTTCTTTA 58.248 29.630 0.00 0.00 44.61 1.85
651 678 9.369904 GATGGCATTAGCATTTTCTTTCTTTAA 57.630 29.630 0.00 0.00 44.61 1.52
652 679 9.895138 ATGGCATTAGCATTTTCTTTCTTTAAT 57.105 25.926 0.00 0.00 44.61 1.40
653 680 9.153721 TGGCATTAGCATTTTCTTTCTTTAATG 57.846 29.630 0.00 0.00 44.61 1.90
654 681 9.154847 GGCATTAGCATTTTCTTTCTTTAATGT 57.845 29.630 0.00 0.00 44.61 2.71
657 684 8.964420 TTAGCATTTTCTTTCTTTAATGTCCG 57.036 30.769 0.00 0.00 32.10 4.79
658 685 7.214467 AGCATTTTCTTTCTTTAATGTCCGA 57.786 32.000 0.00 0.00 32.10 4.55
659 686 7.657336 AGCATTTTCTTTCTTTAATGTCCGAA 58.343 30.769 0.00 0.00 32.10 4.30
660 687 8.306761 AGCATTTTCTTTCTTTAATGTCCGAAT 58.693 29.630 0.00 0.00 32.10 3.34
661 688 8.925700 GCATTTTCTTTCTTTAATGTCCGAATT 58.074 29.630 0.00 0.00 32.10 2.17
664 691 9.810545 TTTTCTTTCTTTAATGTCCGAATTTGT 57.189 25.926 0.00 0.00 0.00 2.83
665 692 9.458374 TTTCTTTCTTTAATGTCCGAATTTGTC 57.542 29.630 0.00 0.00 0.00 3.18
666 693 7.590279 TCTTTCTTTAATGTCCGAATTTGTCC 58.410 34.615 0.00 0.00 0.00 4.02
667 694 6.885952 TTCTTTAATGTCCGAATTTGTCCA 57.114 33.333 0.00 0.00 0.00 4.02
668 695 6.885952 TCTTTAATGTCCGAATTTGTCCAA 57.114 33.333 0.00 0.00 0.00 3.53
669 696 7.278461 TCTTTAATGTCCGAATTTGTCCAAA 57.722 32.000 0.00 0.00 34.46 3.28
670 697 7.142680 TCTTTAATGTCCGAATTTGTCCAAAC 58.857 34.615 0.00 0.00 32.51 2.93
671 698 4.927978 AATGTCCGAATTTGTCCAAACA 57.072 36.364 0.00 0.00 32.51 2.83
672 699 5.467035 AATGTCCGAATTTGTCCAAACAT 57.533 34.783 0.00 0.00 34.73 2.71
673 700 4.235939 TGTCCGAATTTGTCCAAACATG 57.764 40.909 0.00 0.00 34.73 3.21
674 701 3.634448 TGTCCGAATTTGTCCAAACATGT 59.366 39.130 0.00 0.00 34.73 3.21
675 702 4.822350 TGTCCGAATTTGTCCAAACATGTA 59.178 37.500 0.00 0.00 34.73 2.29
676 703 5.299531 TGTCCGAATTTGTCCAAACATGTAA 59.700 36.000 0.00 0.00 34.73 2.41
677 704 6.183360 TGTCCGAATTTGTCCAAACATGTAAA 60.183 34.615 0.00 0.00 34.73 2.01
678 705 6.362283 GTCCGAATTTGTCCAAACATGTAAAG 59.638 38.462 0.00 0.00 34.73 1.85
679 706 5.118510 CCGAATTTGTCCAAACATGTAAAGC 59.881 40.000 0.00 0.00 34.73 3.51
680 707 5.920273 CGAATTTGTCCAAACATGTAAAGCT 59.080 36.000 0.00 0.00 34.73 3.74
681 708 7.081349 CGAATTTGTCCAAACATGTAAAGCTA 58.919 34.615 0.00 0.00 34.73 3.32
682 709 7.754924 CGAATTTGTCCAAACATGTAAAGCTAT 59.245 33.333 0.00 0.00 34.73 2.97
683 710 9.423061 GAATTTGTCCAAACATGTAAAGCTATT 57.577 29.630 0.00 0.00 34.73 1.73
684 711 8.986477 ATTTGTCCAAACATGTAAAGCTATTC 57.014 30.769 0.00 0.00 34.73 1.75
685 712 7.517614 TTGTCCAAACATGTAAAGCTATTCA 57.482 32.000 0.00 0.00 34.73 2.57
686 713 7.144722 TGTCCAAACATGTAAAGCTATTCAG 57.855 36.000 0.00 0.00 0.00 3.02
687 714 6.714810 TGTCCAAACATGTAAAGCTATTCAGT 59.285 34.615 0.00 0.00 0.00 3.41
688 715 7.023575 GTCCAAACATGTAAAGCTATTCAGTG 58.976 38.462 0.00 0.00 0.00 3.66
689 716 5.801947 CCAAACATGTAAAGCTATTCAGTGC 59.198 40.000 0.00 0.00 0.00 4.40
690 717 6.380995 CAAACATGTAAAGCTATTCAGTGCA 58.619 36.000 0.00 0.00 0.00 4.57
691 718 6.764308 AACATGTAAAGCTATTCAGTGCAT 57.236 33.333 0.00 0.00 0.00 3.96
692 719 6.127810 ACATGTAAAGCTATTCAGTGCATG 57.872 37.500 0.00 0.00 37.69 4.06
693 720 4.621068 TGTAAAGCTATTCAGTGCATGC 57.379 40.909 11.82 11.82 0.00 4.06
694 721 3.378112 TGTAAAGCTATTCAGTGCATGCC 59.622 43.478 16.68 6.65 0.00 4.40
695 722 1.396653 AAGCTATTCAGTGCATGCCC 58.603 50.000 16.68 2.78 0.00 5.36
696 723 0.816825 AGCTATTCAGTGCATGCCCG 60.817 55.000 16.68 3.27 0.00 6.13
697 724 0.815213 GCTATTCAGTGCATGCCCGA 60.815 55.000 16.68 5.94 0.00 5.14
764 791 3.612860 CACGAGCATCCACAGTTTACTAC 59.387 47.826 0.00 0.00 0.00 2.73
806 836 0.383949 TTGGCCAAAACGTGCTTCTC 59.616 50.000 17.98 0.00 0.00 2.87
824 860 1.543802 CTCCTGATGAGATAGACGGCC 59.456 57.143 0.00 0.00 44.42 6.13
856 894 1.879380 CCAATCAAGCAAAGACGACCA 59.121 47.619 0.00 0.00 0.00 4.02
865 903 1.136252 CAAAGACGACCACATGAAGCG 60.136 52.381 0.00 0.00 0.00 4.68
879 917 0.110644 GAAGCGAAACGTGAAGGCTG 60.111 55.000 4.70 0.00 33.58 4.85
907 954 1.810441 CAAGAGCCGAGCAGAGCAG 60.810 63.158 0.00 0.00 0.00 4.24
908 955 3.016541 AAGAGCCGAGCAGAGCAGG 62.017 63.158 0.00 0.00 0.00 4.85
940 990 0.250770 AACGGAAGGAAGAAGGCACC 60.251 55.000 0.00 0.00 0.00 5.01
966 1016 1.741401 CGAATCCGCTGCTTCACCA 60.741 57.895 0.00 0.00 0.00 4.17
1020 1073 7.122948 AGACGAATGGATCTTAACTTCAGTAGT 59.877 37.037 0.00 0.00 39.32 2.73
1026 1079 6.436218 TGGATCTTAACTTCAGTAGTACAGCA 59.564 38.462 2.52 0.00 35.54 4.41
1039 1092 2.093075 AGTACAGCAAGATCAGCAGCAT 60.093 45.455 11.97 0.00 0.00 3.79
1040 1093 1.835494 ACAGCAAGATCAGCAGCATT 58.165 45.000 11.97 0.00 0.00 3.56
1041 1094 2.995283 ACAGCAAGATCAGCAGCATTA 58.005 42.857 11.97 0.00 0.00 1.90
1042 1095 2.943690 ACAGCAAGATCAGCAGCATTAG 59.056 45.455 11.97 0.00 0.00 1.73
1043 1096 1.948145 AGCAAGATCAGCAGCATTAGC 59.052 47.619 11.97 0.00 42.56 3.09
1044 1097 1.674441 GCAAGATCAGCAGCATTAGCA 59.326 47.619 5.41 0.00 45.49 3.49
1045 1098 2.287069 GCAAGATCAGCAGCATTAGCAG 60.287 50.000 5.41 0.00 45.49 4.24
1105 1158 2.656069 GCCGCCACCTTCTACTCCA 61.656 63.158 0.00 0.00 0.00 3.86
1182 1235 2.835431 CTCTCCCTCGTCCCGCAT 60.835 66.667 0.00 0.00 0.00 4.73
1464 1520 4.632458 GAGATCGCCGACCGCCTC 62.632 72.222 0.00 0.00 36.73 4.70
1956 2012 2.736995 GTCACGCACTTGCCGCTA 60.737 61.111 0.00 0.00 37.91 4.26
1993 2049 4.711949 CGCTGCTGAGGGCCAAGT 62.712 66.667 6.18 0.00 40.92 3.16
2196 2305 2.334977 TGTTGTAGTCCAGGTGTCCAT 58.665 47.619 0.00 0.00 0.00 3.41
2197 2306 2.038426 TGTTGTAGTCCAGGTGTCCATG 59.962 50.000 0.00 0.00 0.00 3.66
2198 2307 2.301870 GTTGTAGTCCAGGTGTCCATGA 59.698 50.000 0.00 0.00 0.00 3.07
2199 2308 1.899814 TGTAGTCCAGGTGTCCATGAC 59.100 52.381 0.00 0.00 0.00 3.06
2200 2309 1.899814 GTAGTCCAGGTGTCCATGACA 59.100 52.381 0.00 0.00 40.50 3.58
2201 2310 1.434188 AGTCCAGGTGTCCATGACAA 58.566 50.000 0.00 0.00 44.49 3.18
2202 2311 1.774254 AGTCCAGGTGTCCATGACAAA 59.226 47.619 0.00 0.00 44.49 2.83
2203 2312 2.174639 AGTCCAGGTGTCCATGACAAAA 59.825 45.455 0.00 0.00 44.49 2.44
2204 2313 3.157087 GTCCAGGTGTCCATGACAAAAT 58.843 45.455 0.00 0.00 44.49 1.82
2205 2314 3.057315 GTCCAGGTGTCCATGACAAAATG 60.057 47.826 0.00 0.00 44.49 2.32
2206 2315 2.353011 CCAGGTGTCCATGACAAAATGC 60.353 50.000 0.00 0.00 44.49 3.56
2207 2316 2.559668 CAGGTGTCCATGACAAAATGCT 59.440 45.455 0.00 0.00 44.49 3.79
2208 2317 3.758023 CAGGTGTCCATGACAAAATGCTA 59.242 43.478 0.00 0.00 44.49 3.49
2209 2318 4.012374 AGGTGTCCATGACAAAATGCTAG 58.988 43.478 0.00 0.00 44.49 3.42
2210 2319 3.758554 GGTGTCCATGACAAAATGCTAGT 59.241 43.478 0.00 0.00 44.49 2.57
2211 2320 4.218417 GGTGTCCATGACAAAATGCTAGTT 59.782 41.667 0.00 0.00 44.49 2.24
2212 2321 5.156355 GTGTCCATGACAAAATGCTAGTTG 58.844 41.667 0.00 0.00 44.49 3.16
2213 2322 4.168760 GTCCATGACAAAATGCTAGTTGC 58.831 43.478 0.00 0.00 35.88 4.17
2214 2323 3.119884 TCCATGACAAAATGCTAGTTGCG 60.120 43.478 0.00 0.00 46.63 4.85
2215 2324 3.366273 CCATGACAAAATGCTAGTTGCGT 60.366 43.478 0.00 0.00 46.63 5.24
2216 2325 3.536158 TGACAAAATGCTAGTTGCGTC 57.464 42.857 0.00 0.00 46.63 5.19
2217 2326 2.096466 TGACAAAATGCTAGTTGCGTCG 60.096 45.455 0.00 0.00 46.63 5.12
2218 2327 1.871039 ACAAAATGCTAGTTGCGTCGT 59.129 42.857 0.00 0.00 46.63 4.34
2219 2328 3.061322 ACAAAATGCTAGTTGCGTCGTA 58.939 40.909 0.00 0.00 46.63 3.43
2220 2329 3.495377 ACAAAATGCTAGTTGCGTCGTAA 59.505 39.130 0.00 0.00 46.63 3.18
2221 2330 3.717350 AAATGCTAGTTGCGTCGTAAC 57.283 42.857 17.19 17.19 46.63 2.50
2232 2341 0.911856 CGTCGTAACGCATACACTGG 59.088 55.000 0.00 0.00 42.82 4.00
2233 2342 1.466192 CGTCGTAACGCATACACTGGA 60.466 52.381 0.00 0.00 42.82 3.86
2234 2343 2.182825 GTCGTAACGCATACACTGGAG 58.817 52.381 0.00 0.00 33.89 3.86
2235 2344 0.921347 CGTAACGCATACACTGGAGC 59.079 55.000 0.64 0.00 33.89 4.70
2238 2347 4.185413 CGCATACACTGGAGCGTT 57.815 55.556 0.00 0.00 44.67 4.84
2239 2348 2.456000 CGCATACACTGGAGCGTTT 58.544 52.632 0.00 0.00 44.67 3.60
2240 2349 0.095245 CGCATACACTGGAGCGTTTG 59.905 55.000 0.00 0.00 44.67 2.93
2241 2350 1.156736 GCATACACTGGAGCGTTTGT 58.843 50.000 0.00 0.00 0.00 2.83
2242 2351 1.128692 GCATACACTGGAGCGTTTGTC 59.871 52.381 0.00 0.00 0.00 3.18
2243 2352 1.732259 CATACACTGGAGCGTTTGTCC 59.268 52.381 0.00 0.00 34.31 4.02
2244 2353 0.034337 TACACTGGAGCGTTTGTCCC 59.966 55.000 0.00 0.00 32.49 4.46
2245 2354 1.227823 CACTGGAGCGTTTGTCCCA 60.228 57.895 0.00 0.00 32.49 4.37
2246 2355 0.606401 CACTGGAGCGTTTGTCCCAT 60.606 55.000 0.00 0.00 32.49 4.00
2247 2356 0.321653 ACTGGAGCGTTTGTCCCATC 60.322 55.000 0.00 0.00 32.49 3.51
2248 2357 0.036010 CTGGAGCGTTTGTCCCATCT 60.036 55.000 0.00 0.00 32.49 2.90
2249 2358 1.207089 CTGGAGCGTTTGTCCCATCTA 59.793 52.381 0.00 0.00 32.49 1.98
2250 2359 1.066430 TGGAGCGTTTGTCCCATCTAC 60.066 52.381 0.00 0.00 32.49 2.59
2251 2360 1.278238 GAGCGTTTGTCCCATCTACG 58.722 55.000 0.00 0.00 35.48 3.51
2252 2361 0.108329 AGCGTTTGTCCCATCTACGG 60.108 55.000 0.00 0.00 33.17 4.02
2253 2362 0.108520 GCGTTTGTCCCATCTACGGA 60.109 55.000 0.00 0.00 33.17 4.69
2254 2363 1.922570 CGTTTGTCCCATCTACGGAG 58.077 55.000 0.00 0.00 0.00 4.63
2255 2364 1.475280 CGTTTGTCCCATCTACGGAGA 59.525 52.381 0.00 0.00 35.71 3.71
2256 2365 2.734492 CGTTTGTCCCATCTACGGAGAC 60.734 54.545 0.00 0.00 33.41 3.36
2257 2366 2.496470 GTTTGTCCCATCTACGGAGACT 59.504 50.000 0.00 0.00 33.41 3.24
2258 2367 3.657398 TTGTCCCATCTACGGAGACTA 57.343 47.619 0.00 0.00 33.41 2.59
2259 2368 2.928334 TGTCCCATCTACGGAGACTAC 58.072 52.381 0.00 0.00 33.41 2.73
2260 2369 2.508716 TGTCCCATCTACGGAGACTACT 59.491 50.000 0.00 0.00 33.41 2.57
2261 2370 3.053842 TGTCCCATCTACGGAGACTACTT 60.054 47.826 0.00 0.00 33.41 2.24
2262 2371 4.164796 TGTCCCATCTACGGAGACTACTTA 59.835 45.833 0.00 0.00 33.41 2.24
2263 2372 4.514816 GTCCCATCTACGGAGACTACTTAC 59.485 50.000 0.00 0.00 33.41 2.34
2264 2373 4.411540 TCCCATCTACGGAGACTACTTACT 59.588 45.833 0.00 0.00 33.41 2.24
2265 2374 5.604231 TCCCATCTACGGAGACTACTTACTA 59.396 44.000 0.00 0.00 33.41 1.82
2266 2375 6.271857 TCCCATCTACGGAGACTACTTACTAT 59.728 42.308 0.00 0.00 33.41 2.12
2267 2376 7.455953 TCCCATCTACGGAGACTACTTACTATA 59.544 40.741 0.00 0.00 33.41 1.31
2268 2377 7.548780 CCCATCTACGGAGACTACTTACTATAC 59.451 44.444 0.00 0.00 33.41 1.47
2269 2378 7.275341 CCATCTACGGAGACTACTTACTATACG 59.725 44.444 0.00 0.00 33.41 3.06
2270 2379 6.153067 TCTACGGAGACTACTTACTATACGC 58.847 44.000 0.00 0.00 0.00 4.42
2271 2380 3.738282 ACGGAGACTACTTACTATACGCG 59.262 47.826 3.53 3.53 0.00 6.01
2272 2381 3.738282 CGGAGACTACTTACTATACGCGT 59.262 47.826 19.17 19.17 0.00 6.01
2273 2382 4.210120 CGGAGACTACTTACTATACGCGTT 59.790 45.833 20.78 8.23 0.00 4.84
2274 2383 5.277058 CGGAGACTACTTACTATACGCGTTT 60.277 44.000 20.78 13.35 0.00 3.60
2275 2384 6.490534 GGAGACTACTTACTATACGCGTTTT 58.509 40.000 20.78 8.54 0.00 2.43
2276 2385 6.630840 GGAGACTACTTACTATACGCGTTTTC 59.369 42.308 20.78 0.08 0.00 2.29
2300 2409 8.803201 TCGAGTTGCATATTCTGAGTATAAAG 57.197 34.615 0.00 0.00 0.00 1.85
2345 2454 3.071892 ACGTCAACTGGGAAGGAATAACA 59.928 43.478 0.00 0.00 0.00 2.41
2389 2498 0.187117 TTTGGAAGGGGTGACATGCA 59.813 50.000 0.00 0.00 0.00 3.96
2432 2541 1.560505 GTGGTGGGAGATGGCAAATT 58.439 50.000 0.00 0.00 0.00 1.82
2452 2563 0.318955 CTCCCCTTTTGCAGCAAACG 60.319 55.000 20.49 17.90 32.79 3.60
2456 2567 1.592543 CCCTTTTGCAGCAAACGTTTC 59.407 47.619 20.49 6.47 32.79 2.78
2457 2568 2.539476 CCTTTTGCAGCAAACGTTTCT 58.461 42.857 20.49 8.72 32.79 2.52
2459 2570 3.000222 CCTTTTGCAGCAAACGTTTCTTC 60.000 43.478 20.49 6.84 32.79 2.87
2460 2571 3.502191 TTTGCAGCAAACGTTTCTTCT 57.498 38.095 16.93 5.89 0.00 2.85
2514 2628 2.835764 TCCTCCCACTACGTAAATTGCT 59.164 45.455 0.00 0.00 0.00 3.91
2542 2656 2.117206 TTCGCAATTGCCACCCCT 59.883 55.556 24.24 0.00 37.91 4.79
2574 2689 2.100252 CGTTCGCCAGATAAGAGGGTAA 59.900 50.000 0.00 0.00 0.00 2.85
3203 3318 4.524316 TGCCAAAATTGTTGATCTGGAG 57.476 40.909 0.00 0.00 0.00 3.86
3352 3468 4.321156 GCATTTGTAGTCTGATGCAAACCA 60.321 41.667 0.00 0.00 43.23 3.67
3429 3545 6.613755 TTGACTTGCCTTTACTTAACTCAC 57.386 37.500 0.00 0.00 0.00 3.51
3550 3670 9.715121 ATCATTCTTTGTGCTTAACATGATTTT 57.285 25.926 0.00 0.00 38.99 1.82
3724 4361 4.792521 ACGTAAACAGAATCAGCTCTCT 57.207 40.909 0.00 0.00 0.00 3.10
3752 4389 4.599041 AGTCTTTAACAATATGGGCTGCA 58.401 39.130 0.50 0.00 0.00 4.41
3753 4390 4.399303 AGTCTTTAACAATATGGGCTGCAC 59.601 41.667 0.50 0.00 0.00 4.57
3754 4391 3.699038 TCTTTAACAATATGGGCTGCACC 59.301 43.478 0.00 0.00 37.93 5.01
3788 4425 6.534634 ACCATTCAGCCTGAATTACCTATAC 58.465 40.000 17.16 0.00 44.03 1.47
3790 4427 6.652481 CCATTCAGCCTGAATTACCTATACTG 59.348 42.308 17.16 4.04 44.03 2.74
3826 4463 8.486942 TTTCTCATTTATATTAGGGTCCTCGA 57.513 34.615 0.00 0.00 0.00 4.04
3829 4466 8.930527 TCTCATTTATATTAGGGTCCTCGAAAA 58.069 33.333 0.00 0.00 0.00 2.29
3830 4467 9.555727 CTCATTTATATTAGGGTCCTCGAAAAA 57.444 33.333 0.00 0.00 0.00 1.94
3860 4499 6.358974 TCACAGGTTACTTGAATGATGAGA 57.641 37.500 0.43 0.00 0.00 3.27
3861 4500 6.950842 TCACAGGTTACTTGAATGATGAGAT 58.049 36.000 0.43 0.00 0.00 2.75
3862 4501 6.820152 TCACAGGTTACTTGAATGATGAGATG 59.180 38.462 0.43 0.00 0.00 2.90
3863 4502 6.596888 CACAGGTTACTTGAATGATGAGATGT 59.403 38.462 0.43 0.00 0.00 3.06
3876 4515 2.610433 TGAGATGTCATGCACGAGAAC 58.390 47.619 0.00 0.00 0.00 3.01
3877 4516 1.585668 GAGATGTCATGCACGAGAACG 59.414 52.381 0.00 0.00 45.75 3.95
3925 4564 5.163581 CCTTGCTTACTTTGATTCAGATGGG 60.164 44.000 0.00 0.00 0.00 4.00
3931 4570 7.414540 GCTTACTTTGATTCAGATGGGTACTTG 60.415 40.741 0.00 0.00 0.00 3.16
3998 4637 2.874701 CAGGTATGCCTTCATGTAGCAC 59.125 50.000 0.00 0.00 44.18 4.40
3999 4638 2.158755 AGGTATGCCTTCATGTAGCACC 60.159 50.000 0.00 7.31 44.18 5.01
4000 4639 2.421388 GGTATGCCTTCATGTAGCACCA 60.421 50.000 8.77 0.07 39.77 4.17
4001 4640 2.742428 ATGCCTTCATGTAGCACCAT 57.258 45.000 8.77 2.13 39.77 3.55
4003 4642 1.312815 GCCTTCATGTAGCACCATCC 58.687 55.000 0.00 0.00 0.00 3.51
4004 4643 1.133976 GCCTTCATGTAGCACCATCCT 60.134 52.381 0.00 0.00 0.00 3.24
4006 4645 2.947652 CCTTCATGTAGCACCATCCTTG 59.052 50.000 0.00 0.00 0.00 3.61
4119 4794 2.753989 TTGTTGATGTTGCTGTGACG 57.246 45.000 0.00 0.00 0.00 4.35
4130 4805 1.335810 TGCTGTGACGTCGTAAGTTCT 59.664 47.619 11.62 0.00 39.48 3.01
4198 4882 5.817296 GCATGGAACTGAACCTTTTTCTTTT 59.183 36.000 0.00 0.00 0.00 2.27
4287 4971 1.215673 AGGAGATCTGGAAGCCGTCTA 59.784 52.381 0.00 0.00 0.00 2.59
4291 4975 0.831307 ATCTGGAAGCCGTCTAACCC 59.169 55.000 0.00 0.00 0.00 4.11
4401 5090 2.296752 TCCTTGAAACCGACGTGTCATA 59.703 45.455 0.00 0.00 36.09 2.15
4402 5091 3.061322 CCTTGAAACCGACGTGTCATAA 58.939 45.455 0.00 0.00 36.09 1.90
4403 5092 3.682858 CCTTGAAACCGACGTGTCATAAT 59.317 43.478 0.00 0.00 36.09 1.28
4463 5158 3.125829 CCAGTCCAATCGAACATGACAAG 59.874 47.826 0.00 3.36 0.00 3.16
4542 5243 2.036256 GCATGCTCCCCACCTGTT 59.964 61.111 11.37 0.00 0.00 3.16
4560 5261 1.132643 GTTCTGACTCGCTGTACGGAT 59.867 52.381 5.68 0.00 43.89 4.18
4623 5324 3.716353 ACACATGCCATTCTATACTCCCA 59.284 43.478 0.00 0.00 0.00 4.37
4679 5380 1.488393 CTCCTCCCCCATCTCTTTGTC 59.512 57.143 0.00 0.00 0.00 3.18
4691 5392 3.653344 TCTCTTTGTCGACTCACCAATG 58.347 45.455 17.92 4.84 0.00 2.82
4705 5406 1.321474 CCAATGGAACCCATGATCCG 58.679 55.000 0.00 0.00 44.40 4.18
4758 5459 2.650116 GGAGCTCGGCTGTTCCTGA 61.650 63.158 7.83 0.00 39.88 3.86
4914 5615 9.959775 CGATTCTGTAGACAGTAAAAGATTTTC 57.040 33.333 9.43 0.00 44.12 2.29
5038 5739 1.152368 AGCTGCTGGCAAGGTTCTT 59.848 52.632 0.00 0.00 44.79 2.52
5066 5767 1.153667 CTCAAGGACTCTCTGCGCC 60.154 63.158 4.18 0.00 0.00 6.53
5173 5874 6.573664 TGAAATACATGTTTTAGCTGCTGT 57.426 33.333 13.43 2.92 0.00 4.40
5223 5925 0.554792 CCAGGGATTGGGATTGCTCT 59.445 55.000 0.00 0.00 43.75 4.09
5228 5930 2.889678 GGGATTGGGATTGCTCTTGATC 59.110 50.000 0.00 0.00 0.00 2.92
5341 6072 3.181500 GGAACACCATTTCGTATCCAAGC 60.181 47.826 0.00 0.00 0.00 4.01
5366 6097 8.278482 CTGAAAGCTTTTGTCATGAACTTTAG 57.722 34.615 14.05 0.00 0.00 1.85
5374 6105 8.675705 TTTTGTCATGAACTTTAGTGATCAGA 57.324 30.769 0.00 0.00 0.00 3.27
5375 6106 8.675705 TTTGTCATGAACTTTAGTGATCAGAA 57.324 30.769 0.00 0.00 0.00 3.02
5379 6110 8.602328 GTCATGAACTTTAGTGATCAGAATCAG 58.398 37.037 0.00 0.00 42.53 2.90
5400 6131 0.389948 AGCGACGAACTTGGGTCATC 60.390 55.000 0.00 0.00 32.74 2.92
5431 6162 0.320697 GGTGCCGTCTACTGGTCTTT 59.679 55.000 0.00 0.00 0.00 2.52
5439 6170 3.865745 CGTCTACTGGTCTTTATTGGCTG 59.134 47.826 0.00 0.00 0.00 4.85
5446 6177 4.523083 TGGTCTTTATTGGCTGGTATCAC 58.477 43.478 0.00 0.00 0.00 3.06
5486 6217 1.614241 GCCTAGGCCTTCTTCGGTCA 61.614 60.000 24.19 0.00 34.56 4.02
5494 6225 1.276421 CCTTCTTCGGTCAGACATGGT 59.724 52.381 2.17 0.00 0.00 3.55
5498 6229 1.000843 CTTCGGTCAGACATGGTGACA 59.999 52.381 24.08 8.80 45.24 3.58
5541 6272 0.102120 TGTTGAAAGCCTTGTTGCGG 59.898 50.000 0.00 0.00 36.02 5.69
5549 6281 1.371183 CCTTGTTGCGGAGAGGTCA 59.629 57.895 0.00 0.00 0.00 4.02
5883 6616 4.454678 CTTAATTAGGCAGGCATCTGTGA 58.545 43.478 0.00 0.00 42.78 3.58
6022 6755 2.161410 TGCCATGACGTAGCAATTGAAC 59.839 45.455 10.34 5.47 32.56 3.18
6035 6768 7.532546 CGTAGCAATTGAACGTTTCTTATGAAA 59.467 33.333 19.71 0.00 39.59 2.69
6060 6793 9.448438 AACTAACTGTAGAATATGTGAATTGCA 57.552 29.630 0.00 0.00 0.00 4.08
6072 6805 4.019919 GTGAATTGCACGATGTATTGCT 57.980 40.909 0.00 0.00 39.62 3.91
6073 6806 4.031028 GTGAATTGCACGATGTATTGCTC 58.969 43.478 0.00 0.00 39.62 4.26
6074 6807 3.940852 TGAATTGCACGATGTATTGCTCT 59.059 39.130 0.00 0.00 39.62 4.09
6075 6808 4.395854 TGAATTGCACGATGTATTGCTCTT 59.604 37.500 0.00 0.00 39.62 2.85
6076 6809 4.542662 ATTGCACGATGTATTGCTCTTC 57.457 40.909 0.00 0.00 39.62 2.87
6077 6810 1.926510 TGCACGATGTATTGCTCTTCG 59.073 47.619 0.00 0.00 39.62 3.79
6078 6811 1.927174 GCACGATGTATTGCTCTTCGT 59.073 47.619 0.00 0.00 43.01 3.85
6080 6813 1.927174 ACGATGTATTGCTCTTCGTGC 59.073 47.619 0.00 0.00 41.56 5.34
6081 6814 1.926510 CGATGTATTGCTCTTCGTGCA 59.073 47.619 0.00 0.00 38.80 4.57
6082 6815 2.541346 CGATGTATTGCTCTTCGTGCAT 59.459 45.455 0.00 0.00 40.34 3.96
6083 6816 3.735746 CGATGTATTGCTCTTCGTGCATA 59.264 43.478 0.00 0.00 40.34 3.14
6084 6817 4.143452 CGATGTATTGCTCTTCGTGCATAG 60.143 45.833 0.00 0.00 40.34 2.23
6085 6818 3.457234 TGTATTGCTCTTCGTGCATAGG 58.543 45.455 0.00 0.00 40.34 2.57
6086 6819 1.303309 ATTGCTCTTCGTGCATAGGC 58.697 50.000 0.00 0.00 40.34 3.93
6105 6838 9.599866 GCATAGGCACATATATATGAGTACAAA 57.400 33.333 26.05 10.40 40.72 2.83
6108 6841 8.435931 AGGCACATATATATGAGTACAAAGGA 57.564 34.615 26.05 0.00 37.15 3.36
6109 6842 8.535335 AGGCACATATATATGAGTACAAAGGAG 58.465 37.037 26.05 0.00 37.15 3.69
6110 6843 7.766278 GGCACATATATATGAGTACAAAGGAGG 59.234 40.741 26.05 0.00 37.15 4.30
6111 6844 7.766278 GCACATATATATGAGTACAAAGGAGGG 59.234 40.741 26.05 0.00 37.15 4.30
6112 6845 7.766278 CACATATATATGAGTACAAAGGAGGGC 59.234 40.741 26.05 0.00 37.15 5.19
6113 6846 5.763876 ATATATGAGTACAAAGGAGGGCC 57.236 43.478 0.00 0.00 0.00 5.80
6114 6847 1.668826 ATGAGTACAAAGGAGGGCCA 58.331 50.000 6.18 0.00 36.29 5.36
6115 6848 0.690762 TGAGTACAAAGGAGGGCCAC 59.309 55.000 6.18 0.00 36.29 5.01
6116 6849 0.391263 GAGTACAAAGGAGGGCCACG 60.391 60.000 6.18 0.00 36.29 4.94
6117 6850 1.376812 GTACAAAGGAGGGCCACGG 60.377 63.158 6.18 0.00 36.29 4.94
6118 6851 1.536907 TACAAAGGAGGGCCACGGA 60.537 57.895 6.18 0.00 36.29 4.69
6119 6852 1.833787 TACAAAGGAGGGCCACGGAC 61.834 60.000 6.18 0.00 36.29 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 4.222847 GATCGTGGGCGGGTCCTC 62.223 72.222 0.00 0.00 38.89 3.71
49 50 4.530857 CTGATCGTGGGCGGGTCC 62.531 72.222 0.00 0.00 38.89 4.46
50 51 3.432051 CTCTGATCGTGGGCGGGTC 62.432 68.421 0.00 0.00 38.89 4.46
51 52 3.461773 CTCTGATCGTGGGCGGGT 61.462 66.667 0.00 0.00 38.89 5.28
52 53 3.147595 TCTCTGATCGTGGGCGGG 61.148 66.667 0.00 0.00 38.89 6.13
53 54 2.105128 GTCTCTGATCGTGGGCGG 59.895 66.667 0.00 0.00 38.89 6.13
54 55 2.105128 GGTCTCTGATCGTGGGCG 59.895 66.667 0.00 0.00 39.92 6.13
55 56 2.501610 GGGTCTCTGATCGTGGGC 59.498 66.667 0.00 0.00 0.00 5.36
56 57 2.808315 CGGGTCTCTGATCGTGGG 59.192 66.667 0.00 0.00 0.00 4.61
57 58 2.105128 GCGGGTCTCTGATCGTGG 59.895 66.667 0.00 0.00 0.00 4.94
58 59 2.105128 GGCGGGTCTCTGATCGTG 59.895 66.667 0.00 0.00 0.00 4.35
59 60 3.518998 CGGCGGGTCTCTGATCGT 61.519 66.667 0.00 0.00 0.00 3.73
60 61 4.933064 GCGGCGGGTCTCTGATCG 62.933 72.222 9.78 0.00 0.00 3.69
61 62 3.532155 AGCGGCGGGTCTCTGATC 61.532 66.667 9.78 0.00 0.00 2.92
62 63 3.842923 CAGCGGCGGGTCTCTGAT 61.843 66.667 9.78 0.00 0.00 2.90
77 78 4.729918 GGTGGTGGCTGCCTCCAG 62.730 72.222 35.66 0.00 46.12 3.86
87 88 4.065281 GTCTCCCGACGGTGGTGG 62.065 72.222 13.94 0.00 0.00 4.61
88 89 3.282745 CTGTCTCCCGACGGTGGTG 62.283 68.421 13.94 0.00 43.21 4.17
89 90 2.989824 CTGTCTCCCGACGGTGGT 60.990 66.667 13.94 0.00 43.21 4.16
90 91 2.675423 TCTGTCTCCCGACGGTGG 60.675 66.667 13.94 5.06 45.02 4.61
91 92 2.878429 CTCTGTCTCCCGACGGTG 59.122 66.667 13.94 5.45 45.02 4.94
92 93 3.063084 GCTCTGTCTCCCGACGGT 61.063 66.667 13.94 0.00 45.02 4.83
93 94 3.057547 CTGCTCTGTCTCCCGACGG 62.058 68.421 6.99 6.99 45.92 4.79
94 95 2.487428 CTGCTCTGTCTCCCGACG 59.513 66.667 0.00 0.00 43.21 5.12
95 96 2.183046 GCTGCTCTGTCTCCCGAC 59.817 66.667 0.00 0.00 40.64 4.79
96 97 2.283173 TGCTGCTCTGTCTCCCGA 60.283 61.111 0.00 0.00 0.00 5.14
97 98 2.183811 CTGCTGCTCTGTCTCCCG 59.816 66.667 0.00 0.00 0.00 5.14
98 99 2.125188 GCTGCTGCTCTGTCTCCC 60.125 66.667 8.53 0.00 36.03 4.30
99 100 2.125188 GGCTGCTGCTCTGTCTCC 60.125 66.667 15.64 0.00 39.59 3.71
100 101 0.810823 GATGGCTGCTGCTCTGTCTC 60.811 60.000 15.64 0.00 39.59 3.36
101 102 1.221293 GATGGCTGCTGCTCTGTCT 59.779 57.895 15.64 0.00 39.59 3.41
102 103 2.172372 CGATGGCTGCTGCTCTGTC 61.172 63.158 15.64 7.55 39.59 3.51
103 104 2.125229 CGATGGCTGCTGCTCTGT 60.125 61.111 15.64 0.00 39.59 3.41
104 105 2.895865 CCGATGGCTGCTGCTCTG 60.896 66.667 15.64 3.48 39.59 3.35
192 193 2.976350 ATCGCGATGGGCTGCATG 60.976 61.111 23.04 0.00 40.44 4.06
193 194 2.976350 CATCGCGATGGGCTGCAT 60.976 61.111 35.80 4.02 40.44 3.96
196 197 3.646976 CTGCATCGCGATGGGCTG 61.647 66.667 40.84 29.48 40.44 4.85
197 198 4.166888 ACTGCATCGCGATGGGCT 62.167 61.111 40.84 17.17 40.44 5.19
202 203 1.227380 GGGAAGACTGCATCGCGAT 60.227 57.895 17.62 17.62 0.00 4.58
207 208 0.460987 CAGACCGGGAAGACTGCATC 60.461 60.000 6.32 0.00 0.00 3.91
208 209 1.599047 CAGACCGGGAAGACTGCAT 59.401 57.895 6.32 0.00 0.00 3.96
210 211 2.435059 GCAGACCGGGAAGACTGC 60.435 66.667 18.19 18.19 46.25 4.40
246 250 0.389391 ACGTCACTCCTGTGTGAAGG 59.611 55.000 15.87 9.04 46.77 3.46
248 252 1.107945 TGACGTCACTCCTGTGTGAA 58.892 50.000 15.76 0.00 46.77 3.18
255 259 2.276116 ATGGCGTGACGTCACTCCT 61.276 57.895 41.53 29.86 46.32 3.69
256 260 2.094659 CATGGCGTGACGTCACTCC 61.095 63.158 38.59 38.59 46.32 3.85
257 261 2.094659 CCATGGCGTGACGTCACTC 61.095 63.158 37.63 32.35 46.32 3.51
259 263 2.357034 ACCATGGCGTGACGTCAC 60.357 61.111 33.76 33.76 46.32 3.67
277 281 4.332637 CGCAGTGCTGGTGTTGGC 62.333 66.667 14.33 0.00 0.00 4.52
291 296 3.068064 TCTCCATGGTCGAGCGCA 61.068 61.111 11.47 0.00 0.00 6.09
297 302 0.457851 GTCTGGTCTCTCCATGGTCG 59.542 60.000 12.58 4.49 46.12 4.79
315 320 4.309950 GTGTGGGGGCTTCGACGT 62.310 66.667 0.00 0.00 0.00 4.34
345 351 1.294138 CGACTCCAACGGGGCTTTA 59.706 57.895 0.00 0.00 36.21 1.85
347 353 4.016706 CCGACTCCAACGGGGCTT 62.017 66.667 0.00 0.00 45.65 4.35
354 360 0.580104 CGTTCAACACCGACTCCAAC 59.420 55.000 0.00 0.00 0.00 3.77
356 362 1.068417 CCGTTCAACACCGACTCCA 59.932 57.895 0.00 0.00 0.00 3.86
357 363 1.666872 CCCGTTCAACACCGACTCC 60.667 63.158 0.00 0.00 0.00 3.85
358 364 2.315386 GCCCGTTCAACACCGACTC 61.315 63.158 0.00 0.00 0.00 3.36
359 365 2.280592 GCCCGTTCAACACCGACT 60.281 61.111 0.00 0.00 0.00 4.18
364 370 1.299850 GGCAAAGCCCGTTCAACAC 60.300 57.895 0.00 0.00 44.06 3.32
365 371 3.124686 GGCAAAGCCCGTTCAACA 58.875 55.556 0.00 0.00 44.06 3.33
397 405 3.322466 CCTCCCTTCACCACCGCT 61.322 66.667 0.00 0.00 0.00 5.52
405 413 1.866997 TCTCCCCCTCCTCCCTTCA 60.867 63.158 0.00 0.00 0.00 3.02
408 416 3.369388 GGTCTCCCCCTCCTCCCT 61.369 72.222 0.00 0.00 0.00 4.20
427 436 3.083997 GACCCCAGATCCCGCTGT 61.084 66.667 0.00 0.00 34.06 4.40
463 472 4.292178 CTCTCCCTCATCGCGCCC 62.292 72.222 0.00 0.00 0.00 6.13
464 473 4.292178 CCTCTCCCTCATCGCGCC 62.292 72.222 0.00 0.00 0.00 6.53
465 474 2.691674 CTTCCTCTCCCTCATCGCGC 62.692 65.000 0.00 0.00 0.00 6.86
466 475 1.361993 CTTCCTCTCCCTCATCGCG 59.638 63.158 0.00 0.00 0.00 5.87
467 476 1.745264 CCTTCCTCTCCCTCATCGC 59.255 63.158 0.00 0.00 0.00 4.58
468 477 1.753368 GCCCTTCCTCTCCCTCATCG 61.753 65.000 0.00 0.00 0.00 3.84
469 478 1.753368 CGCCCTTCCTCTCCCTCATC 61.753 65.000 0.00 0.00 0.00 2.92
470 479 1.764054 CGCCCTTCCTCTCCCTCAT 60.764 63.158 0.00 0.00 0.00 2.90
471 480 2.364317 CGCCCTTCCTCTCCCTCA 60.364 66.667 0.00 0.00 0.00 3.86
495 504 5.755409 TTGTCTCTATGGGAAGTTTGCTA 57.245 39.130 0.00 0.00 0.00 3.49
497 506 4.702131 ACATTGTCTCTATGGGAAGTTTGC 59.298 41.667 0.00 0.00 0.00 3.68
540 549 0.035820 TCACCCTTTCCATACACCGC 60.036 55.000 0.00 0.00 0.00 5.68
541 550 2.012051 GCTCACCCTTTCCATACACCG 61.012 57.143 0.00 0.00 0.00 4.94
543 552 2.027192 TGAGCTCACCCTTTCCATACAC 60.027 50.000 13.74 0.00 0.00 2.90
544 553 2.237143 CTGAGCTCACCCTTTCCATACA 59.763 50.000 13.74 0.00 0.00 2.29
550 565 0.980423 ACCTCTGAGCTCACCCTTTC 59.020 55.000 13.74 0.00 0.00 2.62
590 608 0.759959 TCCTAAAAGGCGTGTCACCA 59.240 50.000 0.00 0.00 34.61 4.17
625 643 7.838771 AAAGAAAGAAAATGCTAATGCCATC 57.161 32.000 0.00 0.00 38.71 3.51
648 675 6.392625 TGTTTGGACAAATTCGGACATTAA 57.607 33.333 0.34 0.00 31.49 1.40
649 676 6.015856 ACATGTTTGGACAAATTCGGACATTA 60.016 34.615 0.00 0.00 39.66 1.90
650 677 4.927978 TGTTTGGACAAATTCGGACATT 57.072 36.364 0.34 0.00 31.49 2.71
651 678 4.280677 ACATGTTTGGACAAATTCGGACAT 59.719 37.500 0.00 0.00 39.66 3.06
652 679 3.634448 ACATGTTTGGACAAATTCGGACA 59.366 39.130 0.00 0.00 39.66 4.02
653 680 4.237349 ACATGTTTGGACAAATTCGGAC 57.763 40.909 0.00 0.00 39.66 4.79
654 681 6.392625 TTTACATGTTTGGACAAATTCGGA 57.607 33.333 2.30 0.00 39.66 4.55
655 682 5.118510 GCTTTACATGTTTGGACAAATTCGG 59.881 40.000 2.30 0.00 39.66 4.30
656 683 5.920273 AGCTTTACATGTTTGGACAAATTCG 59.080 36.000 2.30 0.00 39.66 3.34
657 684 8.986477 ATAGCTTTACATGTTTGGACAAATTC 57.014 30.769 2.30 0.00 39.66 2.17
658 685 9.423061 GAATAGCTTTACATGTTTGGACAAATT 57.577 29.630 2.30 0.00 39.66 1.82
659 686 8.584157 TGAATAGCTTTACATGTTTGGACAAAT 58.416 29.630 2.30 0.00 39.66 2.32
660 687 7.946207 TGAATAGCTTTACATGTTTGGACAAA 58.054 30.769 2.30 0.00 39.66 2.83
661 688 7.230510 ACTGAATAGCTTTACATGTTTGGACAA 59.769 33.333 2.30 0.00 39.66 3.18
662 689 6.714810 ACTGAATAGCTTTACATGTTTGGACA 59.285 34.615 2.30 0.00 40.71 4.02
663 690 7.023575 CACTGAATAGCTTTACATGTTTGGAC 58.976 38.462 2.30 0.00 0.00 4.02
664 691 6.349280 GCACTGAATAGCTTTACATGTTTGGA 60.349 38.462 2.30 0.00 0.00 3.53
665 692 5.801947 GCACTGAATAGCTTTACATGTTTGG 59.198 40.000 2.30 0.00 0.00 3.28
666 693 6.380995 TGCACTGAATAGCTTTACATGTTTG 58.619 36.000 2.30 0.00 0.00 2.93
667 694 6.573664 TGCACTGAATAGCTTTACATGTTT 57.426 33.333 2.30 0.00 0.00 2.83
668 695 6.558009 CATGCACTGAATAGCTTTACATGTT 58.442 36.000 2.30 0.00 0.00 2.71
669 696 5.449588 GCATGCACTGAATAGCTTTACATGT 60.450 40.000 14.21 2.69 35.85 3.21
670 697 4.974275 GCATGCACTGAATAGCTTTACATG 59.026 41.667 14.21 0.00 36.37 3.21
671 698 4.037208 GGCATGCACTGAATAGCTTTACAT 59.963 41.667 21.36 0.00 0.00 2.29
672 699 3.378112 GGCATGCACTGAATAGCTTTACA 59.622 43.478 21.36 0.00 0.00 2.41
673 700 3.243201 GGGCATGCACTGAATAGCTTTAC 60.243 47.826 21.36 0.00 0.00 2.01
674 701 2.951642 GGGCATGCACTGAATAGCTTTA 59.048 45.455 21.36 0.00 0.00 1.85
675 702 1.753073 GGGCATGCACTGAATAGCTTT 59.247 47.619 21.36 0.00 0.00 3.51
676 703 1.396653 GGGCATGCACTGAATAGCTT 58.603 50.000 21.36 0.00 0.00 3.74
677 704 0.816825 CGGGCATGCACTGAATAGCT 60.817 55.000 19.64 0.00 0.00 3.32
678 705 0.815213 TCGGGCATGCACTGAATAGC 60.815 55.000 19.64 0.00 0.00 2.97
679 706 1.667236 TTCGGGCATGCACTGAATAG 58.333 50.000 19.64 0.45 0.00 1.73
680 707 2.346766 ATTCGGGCATGCACTGAATA 57.653 45.000 27.21 11.62 40.99 1.75
681 708 1.477553 AATTCGGGCATGCACTGAAT 58.522 45.000 24.66 24.66 43.76 2.57
682 709 1.067706 CAAATTCGGGCATGCACTGAA 60.068 47.619 22.93 22.93 37.60 3.02
683 710 0.527113 CAAATTCGGGCATGCACTGA 59.473 50.000 19.64 14.16 0.00 3.41
684 711 0.244450 ACAAATTCGGGCATGCACTG 59.756 50.000 19.64 11.58 0.00 3.66
685 712 0.527565 GACAAATTCGGGCATGCACT 59.472 50.000 19.64 0.00 0.00 4.40
686 713 0.458370 GGACAAATTCGGGCATGCAC 60.458 55.000 21.36 16.51 0.00 4.57
687 714 0.897401 TGGACAAATTCGGGCATGCA 60.897 50.000 21.36 0.00 0.00 3.96
688 715 0.246086 TTGGACAAATTCGGGCATGC 59.754 50.000 9.90 9.90 0.00 4.06
689 716 2.288702 TGTTTGGACAAATTCGGGCATG 60.289 45.455 0.34 0.00 31.49 4.06
690 717 1.967066 TGTTTGGACAAATTCGGGCAT 59.033 42.857 0.34 0.00 31.49 4.40
691 718 1.403814 TGTTTGGACAAATTCGGGCA 58.596 45.000 0.34 0.00 31.49 5.36
692 719 2.288763 ACATGTTTGGACAAATTCGGGC 60.289 45.455 0.00 0.00 39.66 6.13
693 720 3.658757 ACATGTTTGGACAAATTCGGG 57.341 42.857 0.00 0.00 39.66 5.14
694 721 5.118510 GCTTTACATGTTTGGACAAATTCGG 59.881 40.000 2.30 0.00 39.66 4.30
695 722 5.920273 AGCTTTACATGTTTGGACAAATTCG 59.080 36.000 2.30 0.00 39.66 3.34
696 723 8.986477 ATAGCTTTACATGTTTGGACAAATTC 57.014 30.769 2.30 0.00 39.66 2.17
697 724 9.423061 GAATAGCTTTACATGTTTGGACAAATT 57.577 29.630 2.30 0.00 39.66 1.82
784 814 0.033366 AAGCACGTTTTGGCCAATCC 59.967 50.000 21.26 11.86 0.00 3.01
786 816 1.000274 GAGAAGCACGTTTTGGCCAAT 60.000 47.619 21.26 0.00 0.00 3.16
806 836 0.242286 CGGCCGTCTATCTCATCAGG 59.758 60.000 19.50 0.00 0.00 3.86
850 887 0.865769 GTTTCGCTTCATGTGGTCGT 59.134 50.000 0.00 0.00 0.00 4.34
856 894 1.531149 CCTTCACGTTTCGCTTCATGT 59.469 47.619 0.00 0.00 0.00 3.21
865 903 1.072505 TCCCCAGCCTTCACGTTTC 59.927 57.895 0.00 0.00 0.00 2.78
896 934 2.960659 CGATGCCTGCTCTGCTCG 60.961 66.667 0.00 0.00 0.00 5.03
907 954 2.180204 CCGTTGATCCACCGATGCC 61.180 63.158 0.00 0.00 0.00 4.40
908 955 0.742990 TTCCGTTGATCCACCGATGC 60.743 55.000 0.00 0.00 0.00 3.91
911 958 0.901114 TCCTTCCGTTGATCCACCGA 60.901 55.000 0.00 0.00 0.00 4.69
966 1016 3.759581 TCGGGAGACGGTTAATATAGCT 58.240 45.455 0.00 0.00 44.45 3.32
1020 1073 2.704464 ATGCTGCTGATCTTGCTGTA 57.296 45.000 0.00 12.63 0.00 2.74
1046 1099 2.507102 GCATTGCTGCTGCTGCTG 60.507 61.111 27.67 20.49 45.32 4.41
1182 1235 1.152312 GGGGAGGCGGGAGAAGATA 60.152 63.158 0.00 0.00 0.00 1.98
1722 1778 0.179048 CCATGGCTATGAGGTTGCGA 60.179 55.000 12.26 0.00 36.36 5.10
1885 1941 1.405821 GACGTCGAACCTCCTCATGAT 59.594 52.381 0.00 0.00 0.00 2.45
1924 1980 1.275291 CGTGACCTTGTACCTGTGGAT 59.725 52.381 0.00 0.00 0.00 3.41
2131 2192 8.808529 CCTATGTTTCTCAGAATACTACAAACG 58.191 37.037 0.00 0.00 0.00 3.60
2147 2256 3.181434 TGCCTTCACCAACCTATGTTTCT 60.181 43.478 0.00 0.00 30.42 2.52
2196 2305 2.096466 CGACGCAACTAGCATTTTGTCA 60.096 45.455 0.00 0.00 46.13 3.58
2197 2306 2.096417 ACGACGCAACTAGCATTTTGTC 60.096 45.455 0.00 0.00 46.13 3.18
2198 2307 1.871039 ACGACGCAACTAGCATTTTGT 59.129 42.857 0.00 0.00 46.13 2.83
2199 2308 2.594529 ACGACGCAACTAGCATTTTG 57.405 45.000 0.00 0.00 46.13 2.44
2200 2309 3.422603 CGTTACGACGCAACTAGCATTTT 60.423 43.478 9.16 0.00 46.13 1.82
2201 2310 2.091588 CGTTACGACGCAACTAGCATTT 59.908 45.455 9.16 0.00 46.13 2.32
2202 2311 1.652124 CGTTACGACGCAACTAGCATT 59.348 47.619 9.16 0.00 46.13 3.56
2203 2312 1.265568 CGTTACGACGCAACTAGCAT 58.734 50.000 9.16 0.00 46.13 3.79
2204 2313 2.715758 CGTTACGACGCAACTAGCA 58.284 52.632 9.16 0.00 46.13 3.49
2214 2323 2.182825 CTCCAGTGTATGCGTTACGAC 58.817 52.381 9.62 0.00 33.15 4.34
2215 2324 1.468565 GCTCCAGTGTATGCGTTACGA 60.469 52.381 9.62 0.00 33.15 3.43
2216 2325 0.921347 GCTCCAGTGTATGCGTTACG 59.079 55.000 0.00 0.00 33.15 3.18
2217 2326 0.921347 CGCTCCAGTGTATGCGTTAC 59.079 55.000 11.70 0.00 42.93 2.50
2218 2327 3.339061 CGCTCCAGTGTATGCGTTA 57.661 52.632 11.70 0.00 42.93 3.18
2219 2328 4.185413 CGCTCCAGTGTATGCGTT 57.815 55.556 11.70 0.00 42.93 4.84
2222 2331 1.128692 GACAAACGCTCCAGTGTATGC 59.871 52.381 0.00 0.00 37.87 3.14
2223 2332 1.732259 GGACAAACGCTCCAGTGTATG 59.268 52.381 0.00 0.00 37.87 2.39
2224 2333 1.338769 GGGACAAACGCTCCAGTGTAT 60.339 52.381 0.00 0.00 37.87 2.29
2225 2334 0.034337 GGGACAAACGCTCCAGTGTA 59.966 55.000 0.00 0.00 37.87 2.90
2226 2335 1.227853 GGGACAAACGCTCCAGTGT 60.228 57.895 0.00 0.00 41.05 3.55
2227 2336 1.227823 TGGGACAAACGCTCCAGTG 60.228 57.895 0.00 0.00 31.92 3.66
2228 2337 3.236391 TGGGACAAACGCTCCAGT 58.764 55.556 0.00 0.00 31.92 4.00
2240 2349 3.211718 AGTAGTCTCCGTAGATGGGAC 57.788 52.381 0.00 0.00 33.30 4.46
2241 2350 3.947612 AAGTAGTCTCCGTAGATGGGA 57.052 47.619 0.00 0.00 33.30 4.37
2242 2351 4.716794 AGTAAGTAGTCTCCGTAGATGGG 58.283 47.826 0.00 0.00 33.30 4.00
2243 2352 7.275341 CGTATAGTAAGTAGTCTCCGTAGATGG 59.725 44.444 0.00 0.00 33.30 3.51
2244 2353 7.201427 GCGTATAGTAAGTAGTCTCCGTAGATG 60.201 44.444 0.00 0.00 33.30 2.90
2245 2354 6.811170 GCGTATAGTAAGTAGTCTCCGTAGAT 59.189 42.308 0.00 0.00 33.30 1.98
2246 2355 6.153067 GCGTATAGTAAGTAGTCTCCGTAGA 58.847 44.000 0.00 0.00 0.00 2.59
2247 2356 5.060323 CGCGTATAGTAAGTAGTCTCCGTAG 59.940 48.000 0.00 0.00 0.00 3.51
2248 2357 4.917998 CGCGTATAGTAAGTAGTCTCCGTA 59.082 45.833 0.00 0.00 0.00 4.02
2249 2358 3.738282 CGCGTATAGTAAGTAGTCTCCGT 59.262 47.826 0.00 0.00 0.00 4.69
2250 2359 3.738282 ACGCGTATAGTAAGTAGTCTCCG 59.262 47.826 11.67 0.00 0.00 4.63
2251 2360 5.665381 AACGCGTATAGTAAGTAGTCTCC 57.335 43.478 14.46 0.00 0.00 3.71
2252 2361 6.353064 CGAAAACGCGTATAGTAAGTAGTCTC 59.647 42.308 14.46 0.00 0.00 3.36
2253 2362 6.036083 TCGAAAACGCGTATAGTAAGTAGTCT 59.964 38.462 14.46 0.00 0.00 3.24
2254 2363 6.185399 TCGAAAACGCGTATAGTAAGTAGTC 58.815 40.000 14.46 0.00 0.00 2.59
2255 2364 6.106877 TCGAAAACGCGTATAGTAAGTAGT 57.893 37.500 14.46 0.00 0.00 2.73
2256 2365 6.188175 ACTCGAAAACGCGTATAGTAAGTAG 58.812 40.000 14.46 4.28 0.00 2.57
2257 2366 6.106877 ACTCGAAAACGCGTATAGTAAGTA 57.893 37.500 14.46 0.00 0.00 2.24
2258 2367 4.974591 ACTCGAAAACGCGTATAGTAAGT 58.025 39.130 14.46 9.72 0.00 2.24
2259 2368 5.701469 CAACTCGAAAACGCGTATAGTAAG 58.299 41.667 14.46 9.03 0.00 2.34
2260 2369 4.030529 GCAACTCGAAAACGCGTATAGTAA 59.969 41.667 14.46 0.00 0.00 2.24
2261 2370 3.543494 GCAACTCGAAAACGCGTATAGTA 59.457 43.478 14.46 0.00 0.00 1.82
2262 2371 2.343544 GCAACTCGAAAACGCGTATAGT 59.656 45.455 14.46 9.11 0.00 2.12
2263 2372 2.343246 TGCAACTCGAAAACGCGTATAG 59.657 45.455 14.46 8.42 0.00 1.31
2264 2373 2.326664 TGCAACTCGAAAACGCGTATA 58.673 42.857 14.46 0.00 0.00 1.47
2265 2374 1.141645 TGCAACTCGAAAACGCGTAT 58.858 45.000 14.46 4.20 0.00 3.06
2266 2375 1.141645 ATGCAACTCGAAAACGCGTA 58.858 45.000 14.46 0.00 0.00 4.42
2267 2376 1.141645 TATGCAACTCGAAAACGCGT 58.858 45.000 5.58 5.58 0.00 6.01
2268 2377 2.435685 ATATGCAACTCGAAAACGCG 57.564 45.000 3.53 3.53 0.00 6.01
2269 2378 3.780801 CAGAATATGCAACTCGAAAACGC 59.219 43.478 0.00 0.00 0.00 4.84
2270 2379 5.163953 ACTCAGAATATGCAACTCGAAAACG 60.164 40.000 0.00 0.00 0.00 3.60
2271 2380 6.170675 ACTCAGAATATGCAACTCGAAAAC 57.829 37.500 0.00 0.00 0.00 2.43
2272 2381 9.594478 TTATACTCAGAATATGCAACTCGAAAA 57.406 29.630 0.00 0.00 0.00 2.29
2273 2382 9.594478 TTTATACTCAGAATATGCAACTCGAAA 57.406 29.630 0.00 0.00 0.00 3.46
2274 2383 9.249457 CTTTATACTCAGAATATGCAACTCGAA 57.751 33.333 0.00 0.00 0.00 3.71
2275 2384 8.414003 ACTTTATACTCAGAATATGCAACTCGA 58.586 33.333 0.00 0.00 0.00 4.04
2276 2385 8.581057 ACTTTATACTCAGAATATGCAACTCG 57.419 34.615 0.00 0.00 0.00 4.18
2300 2409 3.864583 TCGCCACGTAACAATACCATTAC 59.135 43.478 0.00 0.00 0.00 1.89
2304 2413 2.067766 GTTCGCCACGTAACAATACCA 58.932 47.619 0.00 0.00 0.00 3.25
2319 2428 1.566018 CCTTCCCAGTTGACGTTCGC 61.566 60.000 0.00 0.00 0.00 4.70
2329 2438 6.388619 ACAATACTGTTATTCCTTCCCAGT 57.611 37.500 0.00 0.00 39.53 4.00
2345 2454 1.987770 CGTTCGCCACGTAACAATACT 59.012 47.619 0.00 0.00 44.49 2.12
2370 2479 0.187117 TGCATGTCACCCCTTCCAAA 59.813 50.000 0.00 0.00 0.00 3.28
2411 2520 3.918253 TTGCCATCTCCCACCACGC 62.918 63.158 0.00 0.00 0.00 5.34
2432 2541 1.039856 GTTTGCTGCAAAAGGGGAGA 58.960 50.000 27.49 2.08 35.03 3.71
2452 2563 9.452065 GAAACATAACTTCTGGAAAGAAGAAAC 57.548 33.333 19.54 2.27 45.93 2.78
2456 2567 8.383318 TCAGAAACATAACTTCTGGAAAGAAG 57.617 34.615 12.74 12.74 46.49 2.85
2457 2568 8.746052 TTCAGAAACATAACTTCTGGAAAGAA 57.254 30.769 11.53 0.00 46.49 2.52
2459 2570 8.383318 TCTTCAGAAACATAACTTCTGGAAAG 57.617 34.615 11.53 9.18 46.49 2.62
2460 2571 8.746052 TTCTTCAGAAACATAACTTCTGGAAA 57.254 30.769 11.53 1.18 46.49 3.13
2514 2628 4.233789 GGCAATTGCGAACATTTTGACTA 58.766 39.130 23.48 0.00 43.26 2.59
2542 2656 2.357034 GCGAACGTCAGCTGGGAA 60.357 61.111 15.13 0.00 0.00 3.97
3203 3318 4.192317 CAGGAGGTAAACATAAGCCAGTC 58.808 47.826 0.00 0.00 0.00 3.51
3429 3545 3.686726 GTCTTCAATAACCACCTCAGCAG 59.313 47.826 0.00 0.00 0.00 4.24
3704 4341 3.862267 CCAGAGAGCTGATTCTGTTTACG 59.138 47.826 14.82 0.00 45.17 3.18
3724 4361 6.157994 AGCCCATATTGTTAAAGACTAGACCA 59.842 38.462 0.00 0.00 0.00 4.02
3752 4389 4.096003 AATGGTAGCAGCCGCGGT 62.096 61.111 28.70 11.01 45.49 5.68
3753 4390 3.272334 GAATGGTAGCAGCCGCGG 61.272 66.667 24.05 24.05 45.49 6.46
3754 4391 2.511373 TGAATGGTAGCAGCCGCG 60.511 61.111 0.00 0.00 45.49 6.46
3829 4466 8.912988 TCATTCAAGTAACCTGTGAAAAGAATT 58.087 29.630 0.00 0.00 35.07 2.17
3830 4467 8.463930 TCATTCAAGTAACCTGTGAAAAGAAT 57.536 30.769 0.00 0.00 35.07 2.40
3860 4499 0.246360 TCCGTTCTCGTGCATGACAT 59.754 50.000 3.97 0.00 35.01 3.06
3861 4500 0.246360 ATCCGTTCTCGTGCATGACA 59.754 50.000 3.97 0.00 35.01 3.58
3862 4501 0.647410 CATCCGTTCTCGTGCATGAC 59.353 55.000 3.97 0.00 35.01 3.06
3863 4502 0.460109 CCATCCGTTCTCGTGCATGA 60.460 55.000 8.64 8.64 35.01 3.07
3876 4515 2.046023 TCTGCAACCAGCCATCCG 60.046 61.111 0.00 0.00 44.83 4.18
3877 4516 1.001641 AGTCTGCAACCAGCCATCC 60.002 57.895 0.00 0.00 44.83 3.51
3925 4564 2.167075 ACGGCCCACTATGTACAAGTAC 59.833 50.000 0.00 3.47 36.63 2.73
3931 4570 2.389962 TCAAACGGCCCACTATGTAC 57.610 50.000 0.00 0.00 0.00 2.90
4006 4645 9.632807 TGTTATAACCAATAATTTCTTGCACAC 57.367 29.630 13.01 0.00 32.70 3.82
4038 4713 9.659503 GCTGGAGCTATCTGATATTCAGAGTGG 62.660 48.148 12.33 6.59 46.10 4.00
4041 4716 5.653507 GCTGGAGCTATCTGATATTCAGAG 58.346 45.833 12.33 2.24 46.10 3.35
4119 4794 7.803079 ATCTAACGGTTTTAGAACTTACGAC 57.197 36.000 0.00 0.00 34.99 4.34
4198 4882 5.291858 CACTATATGCAAGTCGAGAAAAGCA 59.708 40.000 0.00 0.00 36.34 3.91
4287 4971 1.172180 CCATCACTTGCACACGGGTT 61.172 55.000 0.00 0.00 0.00 4.11
4291 4975 2.078849 TACTCCATCACTTGCACACG 57.921 50.000 0.00 0.00 0.00 4.49
4337 5021 1.844771 GCTGTGCTGTGCAATGTCGA 61.845 55.000 0.00 0.00 41.47 4.20
4401 5090 6.406692 AGGATGCGTCATACTACTGTTATT 57.593 37.500 8.47 0.00 32.54 1.40
4402 5091 6.406692 AAGGATGCGTCATACTACTGTTAT 57.593 37.500 8.47 0.00 33.27 1.89
4403 5092 5.847111 AAGGATGCGTCATACTACTGTTA 57.153 39.130 8.47 0.00 33.27 2.41
4542 5243 0.733150 CATCCGTACAGCGAGTCAGA 59.267 55.000 0.00 0.00 44.77 3.27
4560 5261 4.260139 TGTTAGTGAGTATGCGTTTCCA 57.740 40.909 0.00 0.00 0.00 3.53
4623 5324 3.819902 GACCTAGTATACGCCACTAGCTT 59.180 47.826 11.34 3.31 42.72 3.74
4638 5339 1.910722 CATGCCAGCCTGACCTAGT 59.089 57.895 0.00 0.00 0.00 2.57
4679 5380 0.036164 TGGGTTCCATTGGTGAGTCG 59.964 55.000 1.86 0.00 0.00 4.18
4691 5392 2.017049 CTTGAACGGATCATGGGTTCC 58.983 52.381 12.59 8.16 39.36 3.62
4705 5406 1.291877 ACCGCGCATCACTCTTGAAC 61.292 55.000 8.75 0.00 34.61 3.18
4758 5459 2.345244 CTGCCAGACAAGGTCGCT 59.655 61.111 0.00 0.00 37.67 4.93
4914 5615 3.246936 GCAGCTTCAGCAAAAGAAAAAGG 59.753 43.478 0.75 0.00 45.16 3.11
4916 5617 2.859538 CGCAGCTTCAGCAAAAGAAAAA 59.140 40.909 0.75 0.00 45.16 1.94
5038 5739 4.020543 GAGAGTCCTTGAGAAGCCTTCTA 58.979 47.826 7.02 0.00 40.87 2.10
5066 5767 1.807886 GGGAAGCAGCAGCATCAAG 59.192 57.895 8.61 0.00 45.49 3.02
5173 5874 8.296000 CCAACATATCACACACAAAAAGACATA 58.704 33.333 0.00 0.00 0.00 2.29
5223 5925 3.634910 TGGTACTGCTAGTATGCGATCAA 59.365 43.478 0.00 0.00 32.65 2.57
5228 5930 3.254903 TGGTATGGTACTGCTAGTATGCG 59.745 47.826 0.00 0.00 32.65 4.73
5341 6072 7.917505 ACTAAAGTTCATGACAAAAGCTTTCAG 59.082 33.333 13.10 10.88 0.00 3.02
5349 6080 8.675705 TCTGATCACTAAAGTTCATGACAAAA 57.324 30.769 0.00 0.00 0.00 2.44
5366 6097 1.592081 GTCGCTGCTGATTCTGATCAC 59.408 52.381 0.00 0.00 37.37 3.06
5374 6105 0.792640 CAAGTTCGTCGCTGCTGATT 59.207 50.000 0.00 0.00 0.00 2.57
5375 6106 1.016130 CCAAGTTCGTCGCTGCTGAT 61.016 55.000 0.00 0.00 0.00 2.90
5379 6110 2.665185 ACCCAAGTTCGTCGCTGC 60.665 61.111 0.00 0.00 0.00 5.25
5416 6147 3.118738 AGCCAATAAAGACCAGTAGACGG 60.119 47.826 0.00 0.00 0.00 4.79
5439 6170 5.975693 TTTTCATCCTGTTTGGTGATACC 57.024 39.130 0.00 0.00 39.22 2.73
5468 6199 0.461961 CTGACCGAAGAAGGCCTAGG 59.538 60.000 5.16 3.67 33.69 3.02
5486 6217 1.004560 CGCCACTGTCACCATGTCT 60.005 57.895 0.00 0.00 0.00 3.41
5507 6238 1.807742 TCAACAAGGAATAAACGCCCG 59.192 47.619 0.00 0.00 0.00 6.13
5541 6272 7.354751 ACTCCTATGACTAAATTGACCTCTC 57.645 40.000 0.00 0.00 0.00 3.20
5711 6444 4.303282 GCATATTCCCTCTTCGAGAGTTC 58.697 47.826 9.90 0.00 40.72 3.01
5718 6451 0.951040 GGCCGCATATTCCCTCTTCG 60.951 60.000 0.00 0.00 0.00 3.79
5781 6514 7.783090 AGCTGAACATGTCAATCTACTAATG 57.217 36.000 0.00 0.00 35.22 1.90
5883 6616 5.508153 CCAGAAGATATGAAGAACCGATCGT 60.508 44.000 15.09 0.00 0.00 3.73
6035 6768 8.883731 GTGCAATTCACATATTCTACAGTTAGT 58.116 33.333 0.00 0.00 44.98 2.24
6041 6774 6.538381 ACATCGTGCAATTCACATATTCTACA 59.462 34.615 0.00 0.00 45.92 2.74
6042 6775 6.948353 ACATCGTGCAATTCACATATTCTAC 58.052 36.000 0.00 0.00 45.92 2.59
6043 6776 8.831715 ATACATCGTGCAATTCACATATTCTA 57.168 30.769 0.00 0.00 45.92 2.10
6044 6777 7.734924 ATACATCGTGCAATTCACATATTCT 57.265 32.000 0.00 0.00 45.92 2.40
6045 6778 7.149080 GCAATACATCGTGCAATTCACATATTC 60.149 37.037 0.00 0.00 45.92 1.75
6046 6779 6.638063 GCAATACATCGTGCAATTCACATATT 59.362 34.615 0.00 0.00 45.92 1.28
6047 6780 6.016860 AGCAATACATCGTGCAATTCACATAT 60.017 34.615 0.00 0.59 45.92 1.78
6048 6781 5.296531 AGCAATACATCGTGCAATTCACATA 59.703 36.000 0.00 0.00 45.92 2.29
6049 6782 4.096833 AGCAATACATCGTGCAATTCACAT 59.903 37.500 0.00 0.83 45.92 3.21
6050 6783 3.439825 AGCAATACATCGTGCAATTCACA 59.560 39.130 0.00 0.00 45.92 3.58
6051 6784 4.019919 AGCAATACATCGTGCAATTCAC 57.980 40.909 0.00 0.00 43.42 3.18
6052 6785 3.940852 AGAGCAATACATCGTGCAATTCA 59.059 39.130 0.00 0.00 43.42 2.57
6053 6786 4.542662 AGAGCAATACATCGTGCAATTC 57.457 40.909 0.00 0.00 43.42 2.17
6054 6787 4.494690 CGAAGAGCAATACATCGTGCAATT 60.495 41.667 0.00 0.00 43.42 2.32
6055 6788 3.001634 CGAAGAGCAATACATCGTGCAAT 59.998 43.478 0.00 0.00 43.42 3.56
6056 6789 2.348362 CGAAGAGCAATACATCGTGCAA 59.652 45.455 0.00 0.00 43.42 4.08
6057 6790 1.926510 CGAAGAGCAATACATCGTGCA 59.073 47.619 0.00 0.00 43.42 4.57
6058 6791 1.927174 ACGAAGAGCAATACATCGTGC 59.073 47.619 0.00 0.00 44.20 5.34
6060 6793 1.927174 GCACGAAGAGCAATACATCGT 59.073 47.619 0.00 0.00 45.32 3.73
6061 6794 2.635141 GCACGAAGAGCAATACATCG 57.365 50.000 0.00 0.00 45.32 3.84
6070 6803 4.521075 TGCCTATGCACGAAGAGC 57.479 55.556 0.00 0.00 44.23 4.09
6078 6811 8.305046 TGTACTCATATATATGTGCCTATGCA 57.695 34.615 19.78 9.97 37.53 3.96
6079 6812 9.599866 TTTGTACTCATATATATGTGCCTATGC 57.400 33.333 19.78 7.96 35.26 3.14
6082 6815 9.541884 TCCTTTGTACTCATATATATGTGCCTA 57.458 33.333 19.78 6.77 35.26 3.93
6083 6816 8.435931 TCCTTTGTACTCATATATATGTGCCT 57.564 34.615 19.78 7.60 35.26 4.75
6084 6817 7.766278 CCTCCTTTGTACTCATATATATGTGCC 59.234 40.741 19.78 12.90 35.26 5.01
6085 6818 7.766278 CCCTCCTTTGTACTCATATATATGTGC 59.234 40.741 19.78 8.16 35.26 4.57
6086 6819 7.766278 GCCCTCCTTTGTACTCATATATATGTG 59.234 40.741 19.78 19.25 35.26 3.21
6087 6820 7.092846 GGCCCTCCTTTGTACTCATATATATGT 60.093 40.741 19.78 6.81 35.26 2.29
6088 6821 7.092891 TGGCCCTCCTTTGTACTCATATATATG 60.093 40.741 15.47 15.47 35.04 1.78
6089 6822 6.965866 TGGCCCTCCTTTGTACTCATATATAT 59.034 38.462 0.00 0.00 0.00 0.86
6090 6823 6.212791 GTGGCCCTCCTTTGTACTCATATATA 59.787 42.308 0.00 0.00 0.00 0.86
6091 6824 5.013183 GTGGCCCTCCTTTGTACTCATATAT 59.987 44.000 0.00 0.00 0.00 0.86
6092 6825 4.347000 GTGGCCCTCCTTTGTACTCATATA 59.653 45.833 0.00 0.00 0.00 0.86
6093 6826 3.136626 GTGGCCCTCCTTTGTACTCATAT 59.863 47.826 0.00 0.00 0.00 1.78
6094 6827 2.504175 GTGGCCCTCCTTTGTACTCATA 59.496 50.000 0.00 0.00 0.00 2.15
6095 6828 1.282157 GTGGCCCTCCTTTGTACTCAT 59.718 52.381 0.00 0.00 0.00 2.90
6096 6829 0.690762 GTGGCCCTCCTTTGTACTCA 59.309 55.000 0.00 0.00 0.00 3.41
6097 6830 0.391263 CGTGGCCCTCCTTTGTACTC 60.391 60.000 0.00 0.00 0.00 2.59
6098 6831 1.677552 CGTGGCCCTCCTTTGTACT 59.322 57.895 0.00 0.00 0.00 2.73
6099 6832 1.376812 CCGTGGCCCTCCTTTGTAC 60.377 63.158 0.00 0.00 0.00 2.90
6100 6833 1.536907 TCCGTGGCCCTCCTTTGTA 60.537 57.895 0.00 0.00 0.00 2.41
6101 6834 2.852075 TCCGTGGCCCTCCTTTGT 60.852 61.111 0.00 0.00 0.00 2.83
6102 6835 2.359975 GTCCGTGGCCCTCCTTTG 60.360 66.667 0.00 0.00 0.00 2.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.