Multiple sequence alignment - TraesCS1B01G211200
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1B01G211200 | chr1B | 100.000 | 4128 | 0 | 0 | 1 | 4128 | 384302003 | 384297876 | 0.000000e+00 | 7624.0 |
1 | TraesCS1B01G211200 | chr1B | 85.853 | 721 | 70 | 15 | 2432 | 3142 | 34777018 | 34777716 | 0.000000e+00 | 737.0 |
2 | TraesCS1B01G211200 | chr1B | 85.853 | 721 | 70 | 15 | 2432 | 3142 | 34794346 | 34795044 | 0.000000e+00 | 737.0 |
3 | TraesCS1B01G211200 | chr1D | 90.486 | 2775 | 179 | 37 | 1402 | 4128 | 282950808 | 282948071 | 0.000000e+00 | 3583.0 |
4 | TraesCS1B01G211200 | chr1D | 88.984 | 1398 | 76 | 39 | 1 | 1362 | 282952161 | 282950806 | 0.000000e+00 | 1657.0 |
5 | TraesCS1B01G211200 | chr1D | 100.000 | 29 | 0 | 0 | 464 | 492 | 360473047 | 360473075 | 2.000000e-03 | 54.7 |
6 | TraesCS1B01G211200 | chr1A | 88.340 | 2187 | 153 | 43 | 1402 | 3556 | 354939919 | 354937803 | 0.000000e+00 | 2532.0 |
7 | TraesCS1B01G211200 | chr1A | 96.422 | 531 | 16 | 1 | 3599 | 4126 | 354937719 | 354937189 | 0.000000e+00 | 872.0 |
8 | TraesCS1B01G211200 | chr1A | 84.531 | 821 | 38 | 36 | 573 | 1362 | 354940679 | 354939917 | 0.000000e+00 | 730.0 |
9 | TraesCS1B01G211200 | chr1A | 88.017 | 242 | 28 | 1 | 2 | 242 | 354941509 | 354941268 | 6.750000e-73 | 285.0 |
10 | TraesCS1B01G211200 | chr1A | 86.842 | 76 | 10 | 0 | 494 | 569 | 354940838 | 354940763 | 7.350000e-13 | 86.1 |
11 | TraesCS1B01G211200 | chr2B | 86.159 | 867 | 98 | 15 | 2243 | 3099 | 65472562 | 65473416 | 0.000000e+00 | 917.0 |
12 | TraesCS1B01G211200 | chr4A | 82.550 | 298 | 32 | 10 | 2766 | 3061 | 196609536 | 196609257 | 1.150000e-60 | 244.0 |
13 | TraesCS1B01G211200 | chr4A | 90.000 | 120 | 11 | 1 | 3146 | 3264 | 196609226 | 196609107 | 1.990000e-33 | 154.0 |
14 | TraesCS1B01G211200 | chr4A | 100.000 | 30 | 0 | 0 | 464 | 493 | 165711874 | 165711903 | 5.760000e-04 | 56.5 |
15 | TraesCS1B01G211200 | chr5B | 88.618 | 123 | 13 | 1 | 3145 | 3266 | 397964580 | 397964702 | 9.250000e-32 | 148.0 |
16 | TraesCS1B01G211200 | chr5B | 96.875 | 32 | 1 | 0 | 464 | 495 | 10464494 | 10464463 | 2.000000e-03 | 54.7 |
17 | TraesCS1B01G211200 | chr3D | 94.444 | 36 | 2 | 0 | 457 | 492 | 143246471 | 143246506 | 5.760000e-04 | 56.5 |
18 | TraesCS1B01G211200 | chr7D | 100.000 | 29 | 0 | 0 | 464 | 492 | 613714563 | 613714535 | 2.000000e-03 | 54.7 |
19 | TraesCS1B01G211200 | chr5A | 94.286 | 35 | 2 | 0 | 457 | 491 | 43255425 | 43255391 | 2.000000e-03 | 54.7 |
20 | TraesCS1B01G211200 | chr2A | 96.875 | 32 | 1 | 0 | 464 | 495 | 727188141 | 727188110 | 2.000000e-03 | 54.7 |
21 | TraesCS1B01G211200 | chr2D | 100.000 | 28 | 0 | 0 | 464 | 491 | 562180438 | 562180411 | 7.000000e-03 | 52.8 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1B01G211200 | chr1B | 384297876 | 384302003 | 4127 | True | 7624.00 | 7624 | 100.0000 | 1 | 4128 | 1 | chr1B.!!$R1 | 4127 |
1 | TraesCS1B01G211200 | chr1B | 34777018 | 34777716 | 698 | False | 737.00 | 737 | 85.8530 | 2432 | 3142 | 1 | chr1B.!!$F1 | 710 |
2 | TraesCS1B01G211200 | chr1B | 34794346 | 34795044 | 698 | False | 737.00 | 737 | 85.8530 | 2432 | 3142 | 1 | chr1B.!!$F2 | 710 |
3 | TraesCS1B01G211200 | chr1D | 282948071 | 282952161 | 4090 | True | 2620.00 | 3583 | 89.7350 | 1 | 4128 | 2 | chr1D.!!$R1 | 4127 |
4 | TraesCS1B01G211200 | chr1A | 354937189 | 354941509 | 4320 | True | 901.02 | 2532 | 88.8304 | 2 | 4126 | 5 | chr1A.!!$R1 | 4124 |
5 | TraesCS1B01G211200 | chr2B | 65472562 | 65473416 | 854 | False | 917.00 | 917 | 86.1590 | 2243 | 3099 | 1 | chr2B.!!$F1 | 856 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
963 | 1331 | 0.398381 | CTTCCTCCTCTCCTCCCCAG | 60.398 | 65.0 | 0.00 | 0.0 | 0.00 | 4.45 | F |
1229 | 1615 | 0.036765 | ATCCTGTTCTTGGCGCGTTA | 60.037 | 50.0 | 8.43 | 0.0 | 0.00 | 3.18 | F |
1237 | 1623 | 0.247537 | CTTGGCGCGTTACGGAAATC | 60.248 | 55.0 | 8.43 | 0.0 | 43.93 | 2.17 | F |
1395 | 1782 | 0.319728 | TTCTGTCTCCAGTCTGCTGC | 59.680 | 55.0 | 0.00 | 0.0 | 41.26 | 5.25 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1871 | 2274 | 1.066430 | TCGGCATGGGTGTTCTACTTC | 60.066 | 52.381 | 0.00 | 0.0 | 0.00 | 3.01 | R |
2787 | 3207 | 1.593469 | CAGCACATCAGAAGATCAGCG | 59.407 | 52.381 | 0.00 | 0.0 | 36.62 | 5.18 | R |
2999 | 3419 | 2.414994 | ATTACAGCAGCAGCATCAGT | 57.585 | 45.000 | 3.17 | 0.0 | 45.49 | 3.41 | R |
3290 | 3716 | 0.871057 | CACACACACACACACACACA | 59.129 | 50.000 | 0.00 | 0.0 | 0.00 | 3.72 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
22 | 23 | 2.031682 | GTGATGGTGTTGCTCAGTTGAC | 60.032 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
68 | 69 | 4.142249 | CGTAGTATCCACATGGTGAGAACA | 60.142 | 45.833 | 0.00 | 0.00 | 35.23 | 3.18 |
78 | 79 | 3.744238 | TGGTGAGAACAAGAATCACGA | 57.256 | 42.857 | 0.00 | 0.00 | 43.39 | 4.35 |
82 | 83 | 4.150804 | GGTGAGAACAAGAATCACGAGAAC | 59.849 | 45.833 | 0.00 | 0.00 | 43.39 | 3.01 |
210 | 212 | 3.068307 | GCCTAGACCTCTCTCGCAAATAA | 59.932 | 47.826 | 0.00 | 0.00 | 0.00 | 1.40 |
226 | 228 | 8.740123 | TCGCAAATAAGTAATCCAAAAGGATA | 57.260 | 30.769 | 0.00 | 0.00 | 0.00 | 2.59 |
288 | 531 | 3.982316 | CTTGATGCGGCAGCCCTCA | 62.982 | 63.158 | 16.43 | 7.86 | 44.33 | 3.86 |
317 | 560 | 1.292223 | CGGTCGGATGTCCAACACT | 59.708 | 57.895 | 0.00 | 0.00 | 35.14 | 3.55 |
335 | 578 | 6.016276 | CCAACACTTATTTCTTAGTGCCAGTT | 60.016 | 38.462 | 0.00 | 0.00 | 44.34 | 3.16 |
393 | 636 | 5.010314 | ACTTCCACGTAAAGTCACACATAGA | 59.990 | 40.000 | 9.14 | 0.00 | 31.36 | 1.98 |
454 | 697 | 8.101419 | ACTCCTTCCGTAAAGAAATGTAAGATT | 58.899 | 33.333 | 0.00 | 0.00 | 37.12 | 2.40 |
504 | 768 | 3.408634 | AGGGAGTACAAAAACATCCACG | 58.591 | 45.455 | 0.00 | 0.00 | 0.00 | 4.94 |
542 | 806 | 4.020218 | TGTCTTCATCGACAATCTCCCTTT | 60.020 | 41.667 | 0.00 | 0.00 | 40.69 | 3.11 |
636 | 988 | 3.566523 | GACCGTCATCGTTAGGATCATC | 58.433 | 50.000 | 0.00 | 0.00 | 31.28 | 2.92 |
655 | 1007 | 5.221880 | TCATCTTTTACATGTGCAAAGTGC | 58.778 | 37.500 | 22.29 | 0.00 | 45.29 | 4.40 |
721 | 1078 | 2.298411 | GCGATGAAAAACATGGGCAT | 57.702 | 45.000 | 0.00 | 0.00 | 39.56 | 4.40 |
737 | 1099 | 2.886859 | CATCCGCGTGATGGTACTC | 58.113 | 57.895 | 22.32 | 0.00 | 45.99 | 2.59 |
757 | 1119 | 1.278238 | CGCGTCCACAGAATTAGGTC | 58.722 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
763 | 1125 | 3.773119 | GTCCACAGAATTAGGTCTGGGTA | 59.227 | 47.826 | 7.10 | 0.00 | 45.98 | 3.69 |
764 | 1126 | 4.409247 | GTCCACAGAATTAGGTCTGGGTAT | 59.591 | 45.833 | 7.10 | 0.00 | 45.98 | 2.73 |
765 | 1127 | 5.601313 | GTCCACAGAATTAGGTCTGGGTATA | 59.399 | 44.000 | 7.10 | 0.00 | 45.98 | 1.47 |
800 | 1167 | 1.823610 | AGGACGGGTCTGCTTAACTAC | 59.176 | 52.381 | 0.00 | 0.00 | 0.00 | 2.73 |
801 | 1168 | 1.823610 | GGACGGGTCTGCTTAACTACT | 59.176 | 52.381 | 0.00 | 0.00 | 0.00 | 2.57 |
802 | 1169 | 2.233186 | GGACGGGTCTGCTTAACTACTT | 59.767 | 50.000 | 0.00 | 0.00 | 0.00 | 2.24 |
879 | 1246 | 1.833630 | AGTCTGATCATCAAGGCGGAA | 59.166 | 47.619 | 0.00 | 0.00 | 0.00 | 4.30 |
956 | 1324 | 4.214327 | CGCCGCTTCCTCCTCTCC | 62.214 | 72.222 | 0.00 | 0.00 | 0.00 | 3.71 |
960 | 1328 | 2.131067 | CGCTTCCTCCTCTCCTCCC | 61.131 | 68.421 | 0.00 | 0.00 | 0.00 | 4.30 |
963 | 1331 | 0.398381 | CTTCCTCCTCTCCTCCCCAG | 60.398 | 65.000 | 0.00 | 0.00 | 0.00 | 4.45 |
969 | 1337 | 1.074623 | CTCTCCTCCCCAGCCTCAT | 60.075 | 63.158 | 0.00 | 0.00 | 0.00 | 2.90 |
970 | 1338 | 1.074926 | TCTCCTCCCCAGCCTCATC | 60.075 | 63.158 | 0.00 | 0.00 | 0.00 | 2.92 |
971 | 1339 | 1.383664 | CTCCTCCCCAGCCTCATCA | 60.384 | 63.158 | 0.00 | 0.00 | 0.00 | 3.07 |
1207 | 1593 | 2.683968 | CCAAGCTGCTGTACGTTCTTA | 58.316 | 47.619 | 1.35 | 0.00 | 0.00 | 2.10 |
1209 | 1595 | 3.684788 | CCAAGCTGCTGTACGTTCTTATT | 59.315 | 43.478 | 1.35 | 0.00 | 0.00 | 1.40 |
1210 | 1596 | 4.868171 | CCAAGCTGCTGTACGTTCTTATTA | 59.132 | 41.667 | 1.35 | 0.00 | 0.00 | 0.98 |
1211 | 1597 | 5.523916 | CCAAGCTGCTGTACGTTCTTATTAT | 59.476 | 40.000 | 1.35 | 0.00 | 0.00 | 1.28 |
1212 | 1598 | 6.292381 | CCAAGCTGCTGTACGTTCTTATTATC | 60.292 | 42.308 | 1.35 | 0.00 | 0.00 | 1.75 |
1213 | 1599 | 5.290386 | AGCTGCTGTACGTTCTTATTATCC | 58.710 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
1214 | 1600 | 5.069251 | AGCTGCTGTACGTTCTTATTATCCT | 59.931 | 40.000 | 0.00 | 0.00 | 0.00 | 3.24 |
1215 | 1601 | 5.175856 | GCTGCTGTACGTTCTTATTATCCTG | 59.824 | 44.000 | 0.00 | 0.00 | 0.00 | 3.86 |
1221 | 1607 | 8.697846 | TGTACGTTCTTATTATCCTGTTCTTG | 57.302 | 34.615 | 0.00 | 0.00 | 0.00 | 3.02 |
1224 | 1610 | 5.276868 | CGTTCTTATTATCCTGTTCTTGGCG | 60.277 | 44.000 | 0.00 | 0.00 | 0.00 | 5.69 |
1229 | 1615 | 0.036765 | ATCCTGTTCTTGGCGCGTTA | 60.037 | 50.000 | 8.43 | 0.00 | 0.00 | 3.18 |
1230 | 1616 | 0.947180 | TCCTGTTCTTGGCGCGTTAC | 60.947 | 55.000 | 8.43 | 0.00 | 0.00 | 2.50 |
1232 | 1618 | 2.222953 | CTGTTCTTGGCGCGTTACGG | 62.223 | 60.000 | 8.43 | 0.00 | 43.93 | 4.02 |
1234 | 1620 | 1.300775 | TTCTTGGCGCGTTACGGAA | 60.301 | 52.632 | 8.43 | 3.83 | 43.93 | 4.30 |
1237 | 1623 | 0.247537 | CTTGGCGCGTTACGGAAATC | 60.248 | 55.000 | 8.43 | 0.00 | 43.93 | 2.17 |
1238 | 1624 | 1.957711 | TTGGCGCGTTACGGAAATCG | 61.958 | 55.000 | 8.43 | 1.92 | 43.93 | 3.34 |
1251 | 1637 | 4.608818 | CGGAAATCGTCATACGTACATG | 57.391 | 45.455 | 0.00 | 0.00 | 43.14 | 3.21 |
1252 | 1638 | 3.121463 | CGGAAATCGTCATACGTACATGC | 60.121 | 47.826 | 0.00 | 0.00 | 43.14 | 4.06 |
1267 | 1653 | 4.218635 | CGTACATGCCATGTAGATCTAGGT | 59.781 | 45.833 | 17.57 | 0.00 | 45.62 | 3.08 |
1362 | 1749 | 1.483004 | TCCAACCGCCTCAAATCGATA | 59.517 | 47.619 | 0.00 | 0.00 | 0.00 | 2.92 |
1363 | 1750 | 1.597663 | CCAACCGCCTCAAATCGATAC | 59.402 | 52.381 | 0.00 | 0.00 | 0.00 | 2.24 |
1364 | 1751 | 1.597663 | CAACCGCCTCAAATCGATACC | 59.402 | 52.381 | 0.00 | 0.00 | 0.00 | 2.73 |
1365 | 1752 | 1.120530 | ACCGCCTCAAATCGATACCT | 58.879 | 50.000 | 0.00 | 0.00 | 0.00 | 3.08 |
1366 | 1753 | 1.068741 | ACCGCCTCAAATCGATACCTC | 59.931 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
1367 | 1754 | 1.605712 | CCGCCTCAAATCGATACCTCC | 60.606 | 57.143 | 0.00 | 0.00 | 0.00 | 4.30 |
1368 | 1755 | 1.784525 | GCCTCAAATCGATACCTCCG | 58.215 | 55.000 | 0.00 | 0.00 | 0.00 | 4.63 |
1369 | 1756 | 1.605712 | GCCTCAAATCGATACCTCCGG | 60.606 | 57.143 | 0.00 | 0.00 | 0.00 | 5.14 |
1370 | 1757 | 1.687123 | CCTCAAATCGATACCTCCGGT | 59.313 | 52.381 | 0.00 | 0.00 | 40.16 | 5.28 |
1371 | 1758 | 2.102588 | CCTCAAATCGATACCTCCGGTT | 59.897 | 50.000 | 0.00 | 0.00 | 37.09 | 4.44 |
1372 | 1759 | 3.431766 | CCTCAAATCGATACCTCCGGTTT | 60.432 | 47.826 | 0.00 | 0.00 | 40.49 | 3.27 |
1373 | 1760 | 4.189231 | CTCAAATCGATACCTCCGGTTTT | 58.811 | 43.478 | 0.00 | 0.00 | 38.15 | 2.43 |
1374 | 1761 | 4.581868 | TCAAATCGATACCTCCGGTTTTT | 58.418 | 39.130 | 0.00 | 0.00 | 38.15 | 1.94 |
1375 | 1762 | 4.632688 | TCAAATCGATACCTCCGGTTTTTC | 59.367 | 41.667 | 0.00 | 0.00 | 38.15 | 2.29 |
1376 | 1763 | 4.482952 | AATCGATACCTCCGGTTTTTCT | 57.517 | 40.909 | 0.00 | 0.00 | 37.09 | 2.52 |
1377 | 1764 | 3.967332 | TCGATACCTCCGGTTTTTCTT | 57.033 | 42.857 | 0.00 | 0.00 | 37.09 | 2.52 |
1378 | 1765 | 3.853475 | TCGATACCTCCGGTTTTTCTTC | 58.147 | 45.455 | 0.00 | 0.00 | 37.09 | 2.87 |
1379 | 1766 | 3.512724 | TCGATACCTCCGGTTTTTCTTCT | 59.487 | 43.478 | 0.00 | 0.00 | 37.09 | 2.85 |
1380 | 1767 | 3.617263 | CGATACCTCCGGTTTTTCTTCTG | 59.383 | 47.826 | 0.00 | 0.00 | 37.09 | 3.02 |
1381 | 1768 | 4.576879 | GATACCTCCGGTTTTTCTTCTGT | 58.423 | 43.478 | 0.00 | 0.00 | 37.09 | 3.41 |
1382 | 1769 | 2.847441 | ACCTCCGGTTTTTCTTCTGTC | 58.153 | 47.619 | 0.00 | 0.00 | 27.29 | 3.51 |
1383 | 1770 | 2.438392 | ACCTCCGGTTTTTCTTCTGTCT | 59.562 | 45.455 | 0.00 | 0.00 | 27.29 | 3.41 |
1384 | 1771 | 3.067833 | CCTCCGGTTTTTCTTCTGTCTC | 58.932 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
1385 | 1772 | 3.067833 | CTCCGGTTTTTCTTCTGTCTCC | 58.932 | 50.000 | 0.00 | 0.00 | 0.00 | 3.71 |
1386 | 1773 | 2.436542 | TCCGGTTTTTCTTCTGTCTCCA | 59.563 | 45.455 | 0.00 | 0.00 | 0.00 | 3.86 |
1387 | 1774 | 2.808543 | CCGGTTTTTCTTCTGTCTCCAG | 59.191 | 50.000 | 0.00 | 0.00 | 40.25 | 3.86 |
1388 | 1775 | 3.467803 | CGGTTTTTCTTCTGTCTCCAGT | 58.532 | 45.455 | 0.00 | 0.00 | 39.82 | 4.00 |
1389 | 1776 | 3.495001 | CGGTTTTTCTTCTGTCTCCAGTC | 59.505 | 47.826 | 0.00 | 0.00 | 39.82 | 3.51 |
1390 | 1777 | 4.709250 | GGTTTTTCTTCTGTCTCCAGTCT | 58.291 | 43.478 | 0.00 | 0.00 | 39.82 | 3.24 |
1391 | 1778 | 4.513318 | GGTTTTTCTTCTGTCTCCAGTCTG | 59.487 | 45.833 | 0.00 | 0.00 | 39.82 | 3.51 |
1392 | 1779 | 3.393089 | TTTCTTCTGTCTCCAGTCTGC | 57.607 | 47.619 | 0.00 | 0.00 | 39.82 | 4.26 |
1393 | 1780 | 2.300956 | TCTTCTGTCTCCAGTCTGCT | 57.699 | 50.000 | 0.00 | 0.00 | 39.82 | 4.24 |
1394 | 1781 | 1.891811 | TCTTCTGTCTCCAGTCTGCTG | 59.108 | 52.381 | 0.00 | 0.00 | 39.82 | 4.41 |
1395 | 1782 | 0.319728 | TTCTGTCTCCAGTCTGCTGC | 59.680 | 55.000 | 0.00 | 0.00 | 41.26 | 5.25 |
1396 | 1783 | 0.829182 | TCTGTCTCCAGTCTGCTGCA | 60.829 | 55.000 | 0.88 | 0.88 | 41.26 | 4.41 |
1397 | 1784 | 0.390078 | CTGTCTCCAGTCTGCTGCAG | 60.390 | 60.000 | 23.31 | 23.31 | 41.26 | 4.41 |
1398 | 1785 | 1.117749 | TGTCTCCAGTCTGCTGCAGT | 61.118 | 55.000 | 27.24 | 8.26 | 41.26 | 4.40 |
1399 | 1786 | 0.891373 | GTCTCCAGTCTGCTGCAGTA | 59.109 | 55.000 | 27.24 | 10.46 | 41.26 | 2.74 |
1400 | 1787 | 1.480137 | GTCTCCAGTCTGCTGCAGTAT | 59.520 | 52.381 | 27.24 | 15.27 | 41.26 | 2.12 |
1421 | 1808 | 4.127566 | TGATGCTCATTTCGATCTGTGA | 57.872 | 40.909 | 0.00 | 0.00 | 0.00 | 3.58 |
1425 | 1812 | 2.030213 | GCTCATTTCGATCTGTGACTGC | 59.970 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
1526 | 1913 | 1.817099 | CATGAACCAGGAGGAGCGC | 60.817 | 63.158 | 0.00 | 0.00 | 38.69 | 5.92 |
1564 | 1951 | 0.536233 | TGCAAGTGCGTAACCACCAT | 60.536 | 50.000 | 0.00 | 0.00 | 45.83 | 3.55 |
1570 | 1957 | 0.951525 | TGCGTAACCACCATCAACCG | 60.952 | 55.000 | 0.00 | 0.00 | 0.00 | 4.44 |
1571 | 1958 | 1.791662 | CGTAACCACCATCAACCGC | 59.208 | 57.895 | 0.00 | 0.00 | 0.00 | 5.68 |
1609 | 1997 | 8.982723 | ACCTCTTCAATTAGTATACATCACACT | 58.017 | 33.333 | 5.50 | 0.00 | 0.00 | 3.55 |
1659 | 2055 | 3.630312 | TGCAGACACGCATCACTAGTATA | 59.370 | 43.478 | 0.00 | 0.00 | 36.86 | 1.47 |
1660 | 2056 | 4.222886 | GCAGACACGCATCACTAGTATAG | 58.777 | 47.826 | 0.00 | 0.00 | 46.50 | 1.31 |
1661 | 2057 | 6.661613 | TGCAGACACGCATCACTAGTATAGT | 61.662 | 44.000 | 0.00 | 0.00 | 45.34 | 2.12 |
1662 | 2058 | 7.404565 | TGCAGACACGCATCACTAGTATAGTA | 61.405 | 42.308 | 0.00 | 0.00 | 43.60 | 1.82 |
1663 | 2059 | 8.649733 | TGCAGACACGCATCACTAGTATAGTAT | 61.650 | 40.741 | 0.00 | 0.00 | 43.60 | 2.12 |
1678 | 2074 | 7.597288 | AGTATAGTATGCCAGTTACACATCA | 57.403 | 36.000 | 0.00 | 0.00 | 0.00 | 3.07 |
1688 | 2084 | 5.350365 | GCCAGTTACACATCACTTTCGATTA | 59.650 | 40.000 | 0.00 | 0.00 | 0.00 | 1.75 |
1708 | 2107 | 1.373246 | CAAATGCCACCAGTTGCCG | 60.373 | 57.895 | 0.00 | 0.00 | 39.73 | 5.69 |
1749 | 2148 | 6.153510 | AGCCATCCTTTCCTGTTATTCTTTTC | 59.846 | 38.462 | 0.00 | 0.00 | 0.00 | 2.29 |
1785 | 2186 | 6.862711 | ACTAGATGATGTGATTCATTGCAG | 57.137 | 37.500 | 0.00 | 0.00 | 36.48 | 4.41 |
1791 | 2192 | 5.195185 | TGATGTGATTCATTGCAGTACCAT | 58.805 | 37.500 | 0.00 | 0.00 | 36.83 | 3.55 |
1798 | 2199 | 5.756195 | TTCATTGCAGTACCATGCTTATC | 57.244 | 39.130 | 8.39 | 0.00 | 46.63 | 1.75 |
1887 | 2292 | 7.921786 | TTAAGAATGAAGTAGAACACCCATG | 57.078 | 36.000 | 0.00 | 0.00 | 0.00 | 3.66 |
1888 | 2293 | 4.265073 | AGAATGAAGTAGAACACCCATGC | 58.735 | 43.478 | 0.00 | 0.00 | 0.00 | 4.06 |
1904 | 2309 | 2.559668 | CCATGCCGATGATTTTATGCCT | 59.440 | 45.455 | 0.00 | 0.00 | 0.00 | 4.75 |
1905 | 2310 | 3.571571 | CATGCCGATGATTTTATGCCTG | 58.428 | 45.455 | 0.00 | 0.00 | 0.00 | 4.85 |
1906 | 2311 | 2.653726 | TGCCGATGATTTTATGCCTGT | 58.346 | 42.857 | 0.00 | 0.00 | 0.00 | 4.00 |
1909 | 2314 | 4.081752 | TGCCGATGATTTTATGCCTGTTTT | 60.082 | 37.500 | 0.00 | 0.00 | 0.00 | 2.43 |
1951 | 2357 | 9.466497 | TCAGAAAATGGTATTTTCTAATCTGCT | 57.534 | 29.630 | 22.12 | 3.44 | 44.30 | 4.24 |
2113 | 2519 | 4.023193 | CGCACAAGGGTTATATCAAATCCC | 60.023 | 45.833 | 0.00 | 0.00 | 38.50 | 3.85 |
2123 | 2530 | 6.787458 | GGTTATATCAAATCCCCATTTTCCCT | 59.213 | 38.462 | 0.00 | 0.00 | 28.97 | 4.20 |
2146 | 2553 | 6.016610 | CCTCTCTAATCAGCTCCACTAACTAC | 60.017 | 46.154 | 0.00 | 0.00 | 0.00 | 2.73 |
2147 | 2554 | 5.527951 | TCTCTAATCAGCTCCACTAACTACG | 59.472 | 44.000 | 0.00 | 0.00 | 0.00 | 3.51 |
2148 | 2555 | 2.873133 | ATCAGCTCCACTAACTACGC | 57.127 | 50.000 | 0.00 | 0.00 | 0.00 | 4.42 |
2150 | 2557 | 2.100197 | TCAGCTCCACTAACTACGCAT | 58.900 | 47.619 | 0.00 | 0.00 | 0.00 | 4.73 |
2151 | 2558 | 2.496070 | TCAGCTCCACTAACTACGCATT | 59.504 | 45.455 | 0.00 | 0.00 | 0.00 | 3.56 |
2152 | 2559 | 3.056107 | TCAGCTCCACTAACTACGCATTT | 60.056 | 43.478 | 0.00 | 0.00 | 0.00 | 2.32 |
2153 | 2560 | 3.684788 | CAGCTCCACTAACTACGCATTTT | 59.315 | 43.478 | 0.00 | 0.00 | 0.00 | 1.82 |
2154 | 2561 | 3.933332 | AGCTCCACTAACTACGCATTTTC | 59.067 | 43.478 | 0.00 | 0.00 | 0.00 | 2.29 |
2155 | 2562 | 3.063588 | GCTCCACTAACTACGCATTTTCC | 59.936 | 47.826 | 0.00 | 0.00 | 0.00 | 3.13 |
2156 | 2563 | 4.504858 | CTCCACTAACTACGCATTTTCCT | 58.495 | 43.478 | 0.00 | 0.00 | 0.00 | 3.36 |
2157 | 2564 | 4.901868 | TCCACTAACTACGCATTTTCCTT | 58.098 | 39.130 | 0.00 | 0.00 | 0.00 | 3.36 |
2158 | 2565 | 5.310451 | TCCACTAACTACGCATTTTCCTTT | 58.690 | 37.500 | 0.00 | 0.00 | 0.00 | 3.11 |
2159 | 2566 | 5.766174 | TCCACTAACTACGCATTTTCCTTTT | 59.234 | 36.000 | 0.00 | 0.00 | 0.00 | 2.27 |
2160 | 2567 | 5.856455 | CCACTAACTACGCATTTTCCTTTTG | 59.144 | 40.000 | 0.00 | 0.00 | 0.00 | 2.44 |
2166 | 2573 | 4.141855 | ACGCATTTTCCTTTTGTACTCG | 57.858 | 40.909 | 0.00 | 0.00 | 0.00 | 4.18 |
2281 | 2688 | 7.255139 | GGCGATATCTTTACCATTGCTTACTTT | 60.255 | 37.037 | 0.34 | 0.00 | 31.04 | 2.66 |
2282 | 2689 | 8.770828 | GCGATATCTTTACCATTGCTTACTTTA | 58.229 | 33.333 | 0.34 | 0.00 | 0.00 | 1.85 |
2291 | 2698 | 5.770162 | ACCATTGCTTACTTTATCCTATGGC | 59.230 | 40.000 | 0.00 | 0.00 | 33.87 | 4.40 |
2292 | 2699 | 5.769662 | CCATTGCTTACTTTATCCTATGGCA | 59.230 | 40.000 | 0.00 | 0.00 | 0.00 | 4.92 |
2293 | 2700 | 6.265196 | CCATTGCTTACTTTATCCTATGGCAA | 59.735 | 38.462 | 0.00 | 0.00 | 40.52 | 4.52 |
2338 | 2745 | 7.201696 | GGAAAATTCAAGGAAACAAAAAGGACC | 60.202 | 37.037 | 0.00 | 0.00 | 0.00 | 4.46 |
2398 | 2805 | 4.929808 | GTGAAGGACTACAACCAGTATGTG | 59.070 | 45.833 | 0.00 | 0.00 | 32.27 | 3.21 |
2504 | 2916 | 3.320826 | ACCAACCCTTTTATGTGACAAGC | 59.679 | 43.478 | 0.00 | 0.00 | 0.00 | 4.01 |
2574 | 2992 | 0.909610 | TTGGTCTCCCAGCCTAGGTG | 60.910 | 60.000 | 11.31 | 7.47 | 43.15 | 4.00 |
2680 | 3098 | 3.181480 | GCACAGCAAGAAAAGGTAACCAA | 60.181 | 43.478 | 0.00 | 0.00 | 37.17 | 3.67 |
2696 | 3114 | 0.950836 | CCAACCATGCGTGTTCTCAA | 59.049 | 50.000 | 4.96 | 0.00 | 0.00 | 3.02 |
2697 | 3115 | 1.541147 | CCAACCATGCGTGTTCTCAAT | 59.459 | 47.619 | 4.96 | 0.00 | 0.00 | 2.57 |
2703 | 3121 | 3.670055 | CCATGCGTGTTCTCAATTCAAAC | 59.330 | 43.478 | 4.96 | 0.00 | 0.00 | 2.93 |
2715 | 3133 | 4.075682 | TCAATTCAAACCATACTTGCCGA | 58.924 | 39.130 | 0.00 | 0.00 | 0.00 | 5.54 |
2721 | 3139 | 2.038387 | ACCATACTTGCCGACAATCC | 57.962 | 50.000 | 0.00 | 0.00 | 34.61 | 3.01 |
2722 | 3140 | 1.559682 | ACCATACTTGCCGACAATCCT | 59.440 | 47.619 | 0.00 | 0.00 | 34.61 | 3.24 |
2723 | 3141 | 2.769663 | ACCATACTTGCCGACAATCCTA | 59.230 | 45.455 | 0.00 | 0.00 | 34.61 | 2.94 |
2725 | 3143 | 4.196193 | CCATACTTGCCGACAATCCTAAA | 58.804 | 43.478 | 0.00 | 0.00 | 34.61 | 1.85 |
2741 | 3159 | 5.270893 | TCCTAAAATCGATCGTTCCATCA | 57.729 | 39.130 | 15.94 | 0.00 | 0.00 | 3.07 |
2787 | 3207 | 7.510549 | TTTAGGCCTGATGATTATTAGTTGC | 57.489 | 36.000 | 17.99 | 0.00 | 0.00 | 4.17 |
2887 | 3307 | 4.101448 | GATCGCTGGGTGGCAGGT | 62.101 | 66.667 | 0.00 | 0.00 | 0.00 | 4.00 |
2968 | 3388 | 7.823310 | AGAATCTACAAACAGAGTAGTCGAGTA | 59.177 | 37.037 | 0.00 | 0.00 | 39.86 | 2.59 |
2975 | 3395 | 7.389884 | ACAAACAGAGTAGTCGAGTAGAACATA | 59.610 | 37.037 | 0.00 | 0.00 | 0.00 | 2.29 |
2995 | 3415 | 9.535270 | GAACATAAAATTCTTGAGAAAGAGACG | 57.465 | 33.333 | 0.00 | 0.00 | 37.61 | 4.18 |
3001 | 3421 | 9.930693 | AAAATTCTTGAGAAAGAGACGTATACT | 57.069 | 29.630 | 0.56 | 0.00 | 37.61 | 2.12 |
3002 | 3422 | 8.918961 | AATTCTTGAGAAAGAGACGTATACTG | 57.081 | 34.615 | 0.56 | 0.00 | 37.61 | 2.74 |
3003 | 3423 | 7.683437 | TTCTTGAGAAAGAGACGTATACTGA | 57.317 | 36.000 | 0.56 | 0.00 | 0.00 | 3.41 |
3195 | 3617 | 4.439057 | AGCGAGAAGTTGTTTAGTTGTGA | 58.561 | 39.130 | 0.00 | 0.00 | 0.00 | 3.58 |
3301 | 3727 | 0.392327 | TGGTGGAGTGTGTGTGTGTG | 60.392 | 55.000 | 0.00 | 0.00 | 0.00 | 3.82 |
3302 | 3728 | 0.392461 | GGTGGAGTGTGTGTGTGTGT | 60.392 | 55.000 | 0.00 | 0.00 | 0.00 | 3.72 |
3303 | 3729 | 0.726827 | GTGGAGTGTGTGTGTGTGTG | 59.273 | 55.000 | 0.00 | 0.00 | 0.00 | 3.82 |
3304 | 3730 | 0.323302 | TGGAGTGTGTGTGTGTGTGT | 59.677 | 50.000 | 0.00 | 0.00 | 0.00 | 3.72 |
3305 | 3731 | 0.726827 | GGAGTGTGTGTGTGTGTGTG | 59.273 | 55.000 | 0.00 | 0.00 | 0.00 | 3.82 |
3345 | 3771 | 4.466567 | TTCACAGTTTTGTACGCAGATG | 57.533 | 40.909 | 0.00 | 0.00 | 35.25 | 2.90 |
3347 | 3773 | 3.493129 | TCACAGTTTTGTACGCAGATGTC | 59.507 | 43.478 | 0.00 | 0.00 | 35.25 | 3.06 |
3348 | 3774 | 3.494626 | CACAGTTTTGTACGCAGATGTCT | 59.505 | 43.478 | 0.00 | 0.00 | 35.25 | 3.41 |
3349 | 3775 | 4.684242 | CACAGTTTTGTACGCAGATGTCTA | 59.316 | 41.667 | 0.00 | 0.00 | 35.25 | 2.59 |
3395 | 3828 | 2.547211 | TCGAGCGTCTTACCTACTATGC | 59.453 | 50.000 | 0.00 | 0.00 | 0.00 | 3.14 |
3412 | 3845 | 5.790593 | ACTATGCGGAGAGAGTTTTGTTAA | 58.209 | 37.500 | 5.28 | 0.00 | 0.00 | 2.01 |
3415 | 3848 | 2.157085 | GCGGAGAGAGTTTTGTTAACCG | 59.843 | 50.000 | 2.48 | 0.00 | 40.60 | 4.44 |
3420 | 3853 | 5.277202 | GGAGAGAGTTTTGTTAACCGTGTTC | 60.277 | 44.000 | 2.48 | 0.00 | 0.00 | 3.18 |
3422 | 3855 | 5.522824 | AGAGAGTTTTGTTAACCGTGTTCTC | 59.477 | 40.000 | 2.48 | 10.04 | 0.00 | 2.87 |
3462 | 3895 | 6.146184 | TCTGTAATGAGAGAAAAGAAGTTGCG | 59.854 | 38.462 | 0.00 | 0.00 | 0.00 | 4.85 |
3465 | 3898 | 0.868406 | AGAGAAAAGAAGTTGCGCCG | 59.132 | 50.000 | 4.18 | 0.00 | 0.00 | 6.46 |
3492 | 3925 | 5.715434 | TTGTGCTTACCCCATAAGAAAAC | 57.285 | 39.130 | 0.00 | 0.00 | 42.75 | 2.43 |
3495 | 3928 | 3.009253 | TGCTTACCCCATAAGAAAACGGA | 59.991 | 43.478 | 0.00 | 0.00 | 42.75 | 4.69 |
3496 | 3929 | 3.626217 | GCTTACCCCATAAGAAAACGGAG | 59.374 | 47.826 | 0.00 | 0.00 | 42.75 | 4.63 |
3497 | 3930 | 2.124277 | ACCCCATAAGAAAACGGAGC | 57.876 | 50.000 | 0.00 | 0.00 | 0.00 | 4.70 |
3498 | 3931 | 1.353022 | ACCCCATAAGAAAACGGAGCA | 59.647 | 47.619 | 0.00 | 0.00 | 0.00 | 4.26 |
3499 | 3932 | 1.743394 | CCCCATAAGAAAACGGAGCAC | 59.257 | 52.381 | 0.00 | 0.00 | 0.00 | 4.40 |
3511 | 3944 | 2.004583 | CGGAGCACGGATTAAGTTGA | 57.995 | 50.000 | 0.00 | 0.00 | 39.42 | 3.18 |
3512 | 3945 | 2.343101 | CGGAGCACGGATTAAGTTGAA | 58.657 | 47.619 | 0.00 | 0.00 | 39.42 | 2.69 |
3513 | 3946 | 2.093783 | CGGAGCACGGATTAAGTTGAAC | 59.906 | 50.000 | 0.00 | 0.00 | 39.42 | 3.18 |
3516 | 3949 | 5.116882 | GGAGCACGGATTAAGTTGAACTAT | 58.883 | 41.667 | 0.00 | 0.00 | 0.00 | 2.12 |
3517 | 3950 | 5.006746 | GGAGCACGGATTAAGTTGAACTATG | 59.993 | 44.000 | 0.00 | 0.00 | 0.00 | 2.23 |
3520 | 3955 | 6.823689 | AGCACGGATTAAGTTGAACTATGAAT | 59.176 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
3522 | 3957 | 7.429340 | GCACGGATTAAGTTGAACTATGAATTG | 59.571 | 37.037 | 0.00 | 0.12 | 0.00 | 2.32 |
3539 | 3974 | 6.968263 | TGAATTGTTTGTAACCCATCAAGA | 57.032 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
3543 | 3978 | 6.723298 | TTGTTTGTAACCCATCAAGAATGT | 57.277 | 33.333 | 0.00 | 0.00 | 33.13 | 2.71 |
3546 | 3981 | 5.720371 | TTGTAACCCATCAAGAATGTTGG | 57.280 | 39.130 | 0.00 | 0.00 | 43.32 | 3.77 |
3556 | 3991 | 6.421801 | CCATCAAGAATGTTGGTGTTTTTCTC | 59.578 | 38.462 | 2.70 | 0.00 | 40.23 | 2.87 |
3557 | 3992 | 6.522625 | TCAAGAATGTTGGTGTTTTTCTCA | 57.477 | 33.333 | 0.00 | 0.00 | 0.00 | 3.27 |
3558 | 3993 | 6.329496 | TCAAGAATGTTGGTGTTTTTCTCAC | 58.671 | 36.000 | 0.00 | 0.00 | 35.36 | 3.51 |
3559 | 3994 | 5.913137 | AGAATGTTGGTGTTTTTCTCACA | 57.087 | 34.783 | 0.00 | 0.00 | 37.52 | 3.58 |
3560 | 3995 | 6.279513 | AGAATGTTGGTGTTTTTCTCACAA | 57.720 | 33.333 | 0.00 | 0.00 | 37.52 | 3.33 |
3561 | 3996 | 6.696411 | AGAATGTTGGTGTTTTTCTCACAAA | 58.304 | 32.000 | 0.00 | 0.00 | 37.52 | 2.83 |
3562 | 3997 | 7.158021 | AGAATGTTGGTGTTTTTCTCACAAAA | 58.842 | 30.769 | 0.00 | 0.00 | 37.52 | 2.44 |
3563 | 3998 | 7.659390 | AGAATGTTGGTGTTTTTCTCACAAAAA | 59.341 | 29.630 | 0.00 | 0.00 | 37.52 | 1.94 |
3595 | 4063 | 2.699954 | ACGTTTCATGGAGTGGTGATC | 58.300 | 47.619 | 0.00 | 0.00 | 0.00 | 2.92 |
3755 | 4238 | 0.319555 | CTGCTTCCGTCTCCGTTTCA | 60.320 | 55.000 | 0.00 | 0.00 | 0.00 | 2.69 |
3907 | 4390 | 4.619227 | ACGTCGCACCAACCCAGG | 62.619 | 66.667 | 0.00 | 0.00 | 0.00 | 4.45 |
3982 | 4465 | 2.036414 | TGCAGCTCCTCTCCTCGT | 59.964 | 61.111 | 0.00 | 0.00 | 0.00 | 4.18 |
3994 | 4477 | 3.443925 | CCTCGTGCCTCGCTCTCA | 61.444 | 66.667 | 0.00 | 0.00 | 39.67 | 3.27 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
46 | 47 | 5.339008 | TGTTCTCACCATGTGGATACTAC | 57.661 | 43.478 | 5.96 | 0.00 | 38.94 | 2.73 |
49 | 50 | 4.832248 | TCTTGTTCTCACCATGTGGATAC | 58.168 | 43.478 | 5.96 | 0.00 | 38.94 | 2.24 |
51 | 52 | 4.371624 | TTCTTGTTCTCACCATGTGGAT | 57.628 | 40.909 | 5.96 | 0.00 | 38.94 | 3.41 |
78 | 79 | 2.027745 | AGCATCACATCAAGGACGTTCT | 60.028 | 45.455 | 0.00 | 0.00 | 0.00 | 3.01 |
82 | 83 | 2.014335 | TGAGCATCACATCAAGGACG | 57.986 | 50.000 | 0.00 | 0.00 | 42.56 | 4.79 |
133 | 134 | 2.029623 | GCACCAGGAGCAATGATCATT | 58.970 | 47.619 | 15.36 | 15.36 | 0.00 | 2.57 |
134 | 135 | 1.688772 | GCACCAGGAGCAATGATCAT | 58.311 | 50.000 | 1.18 | 1.18 | 0.00 | 2.45 |
226 | 228 | 5.719085 | TCAACATGGCCAAACTATAAACCAT | 59.281 | 36.000 | 10.96 | 0.00 | 38.42 | 3.55 |
317 | 560 | 7.011499 | TCACCTAACTGGCACTAAGAAATAA | 57.989 | 36.000 | 0.00 | 0.00 | 40.22 | 1.40 |
335 | 578 | 2.302733 | TGCAGTGCAGATTCTTCACCTA | 59.697 | 45.455 | 15.37 | 0.00 | 33.32 | 3.08 |
393 | 636 | 3.618507 | GCACATAAGCAGAGAGGTTGTCT | 60.619 | 47.826 | 0.00 | 0.00 | 38.62 | 3.41 |
478 | 742 | 6.263617 | GTGGATGTTTTTGTACTCCCTTTGTA | 59.736 | 38.462 | 0.00 | 0.00 | 0.00 | 2.41 |
481 | 745 | 4.277423 | CGTGGATGTTTTTGTACTCCCTTT | 59.723 | 41.667 | 0.00 | 0.00 | 0.00 | 3.11 |
482 | 746 | 3.818773 | CGTGGATGTTTTTGTACTCCCTT | 59.181 | 43.478 | 0.00 | 0.00 | 0.00 | 3.95 |
483 | 747 | 3.408634 | CGTGGATGTTTTTGTACTCCCT | 58.591 | 45.455 | 0.00 | 0.00 | 0.00 | 4.20 |
486 | 750 | 3.002862 | TGTGCGTGGATGTTTTTGTACTC | 59.997 | 43.478 | 0.00 | 0.00 | 0.00 | 2.59 |
487 | 751 | 2.946329 | TGTGCGTGGATGTTTTTGTACT | 59.054 | 40.909 | 0.00 | 0.00 | 0.00 | 2.73 |
488 | 752 | 3.341857 | TGTGCGTGGATGTTTTTGTAC | 57.658 | 42.857 | 0.00 | 0.00 | 0.00 | 2.90 |
489 | 753 | 4.106197 | GTTTGTGCGTGGATGTTTTTGTA | 58.894 | 39.130 | 0.00 | 0.00 | 0.00 | 2.41 |
490 | 754 | 2.926838 | GTTTGTGCGTGGATGTTTTTGT | 59.073 | 40.909 | 0.00 | 0.00 | 0.00 | 2.83 |
491 | 755 | 2.283884 | GGTTTGTGCGTGGATGTTTTTG | 59.716 | 45.455 | 0.00 | 0.00 | 0.00 | 2.44 |
492 | 756 | 2.167487 | AGGTTTGTGCGTGGATGTTTTT | 59.833 | 40.909 | 0.00 | 0.00 | 0.00 | 1.94 |
504 | 768 | 0.874607 | AGACACGTCGAGGTTTGTGC | 60.875 | 55.000 | 8.27 | 0.27 | 35.79 | 4.57 |
721 | 1078 | 2.767445 | CGGAGTACCATCACGCGGA | 61.767 | 63.158 | 12.47 | 5.24 | 35.59 | 5.54 |
737 | 1099 | 0.108329 | ACCTAATTCTGTGGACGCGG | 60.108 | 55.000 | 12.47 | 0.00 | 0.00 | 6.46 |
800 | 1167 | 1.436983 | GCCCGCCAAATCCGTCTAAG | 61.437 | 60.000 | 0.00 | 0.00 | 0.00 | 2.18 |
801 | 1168 | 1.450669 | GCCCGCCAAATCCGTCTAA | 60.451 | 57.895 | 0.00 | 0.00 | 0.00 | 2.10 |
802 | 1169 | 2.188469 | GCCCGCCAAATCCGTCTA | 59.812 | 61.111 | 0.00 | 0.00 | 0.00 | 2.59 |
850 | 1217 | 2.493278 | TGATGATCAGACTCGTGAGCAA | 59.507 | 45.455 | 0.09 | 0.00 | 45.45 | 3.91 |
851 | 1218 | 2.094675 | TGATGATCAGACTCGTGAGCA | 58.905 | 47.619 | 0.09 | 0.00 | 46.31 | 4.26 |
854 | 1221 | 2.159184 | GCCTTGATGATCAGACTCGTGA | 60.159 | 50.000 | 0.09 | 0.00 | 0.00 | 4.35 |
879 | 1246 | 2.550180 | GCTCGGCTTTTCTGACTTTCTT | 59.450 | 45.455 | 0.00 | 0.00 | 0.00 | 2.52 |
956 | 1324 | 0.841961 | TGATTGATGAGGCTGGGGAG | 59.158 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
960 | 1328 | 1.386533 | GTGGTGATTGATGAGGCTGG | 58.613 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
963 | 1331 | 0.753111 | GGGGTGGTGATTGATGAGGC | 60.753 | 60.000 | 0.00 | 0.00 | 0.00 | 4.70 |
969 | 1337 | 2.966732 | GCTCCGGGGTGGTGATTGA | 61.967 | 63.158 | 1.62 | 0.00 | 39.52 | 2.57 |
970 | 1338 | 2.438434 | GCTCCGGGGTGGTGATTG | 60.438 | 66.667 | 1.62 | 0.00 | 39.52 | 2.67 |
971 | 1339 | 4.096003 | CGCTCCGGGGTGGTGATT | 62.096 | 66.667 | 7.11 | 0.00 | 39.52 | 2.57 |
1207 | 1593 | 1.299541 | CGCGCCAAGAACAGGATAAT | 58.700 | 50.000 | 0.00 | 0.00 | 0.00 | 1.28 |
1209 | 1595 | 0.036765 | AACGCGCCAAGAACAGGATA | 60.037 | 50.000 | 5.73 | 0.00 | 0.00 | 2.59 |
1210 | 1596 | 0.036765 | TAACGCGCCAAGAACAGGAT | 60.037 | 50.000 | 5.73 | 0.00 | 0.00 | 3.24 |
1211 | 1597 | 0.947180 | GTAACGCGCCAAGAACAGGA | 60.947 | 55.000 | 5.73 | 0.00 | 0.00 | 3.86 |
1212 | 1598 | 1.495951 | GTAACGCGCCAAGAACAGG | 59.504 | 57.895 | 5.73 | 0.00 | 0.00 | 4.00 |
1213 | 1599 | 1.129809 | CGTAACGCGCCAAGAACAG | 59.870 | 57.895 | 5.73 | 0.00 | 0.00 | 3.16 |
1214 | 1600 | 2.311701 | CCGTAACGCGCCAAGAACA | 61.312 | 57.895 | 5.73 | 0.00 | 39.71 | 3.18 |
1215 | 1601 | 1.559149 | TTCCGTAACGCGCCAAGAAC | 61.559 | 55.000 | 5.73 | 0.00 | 39.71 | 3.01 |
1221 | 1607 | 2.318696 | CGATTTCCGTAACGCGCC | 59.681 | 61.111 | 5.73 | 0.00 | 39.71 | 6.53 |
1230 | 1616 | 3.121463 | GCATGTACGTATGACGATTTCCG | 60.121 | 47.826 | 5.94 | 0.00 | 46.05 | 4.30 |
1231 | 1617 | 3.183775 | GGCATGTACGTATGACGATTTCC | 59.816 | 47.826 | 5.94 | 0.00 | 46.05 | 3.13 |
1232 | 1618 | 3.799963 | TGGCATGTACGTATGACGATTTC | 59.200 | 43.478 | 5.94 | 0.00 | 46.05 | 2.17 |
1234 | 1620 | 3.446310 | TGGCATGTACGTATGACGATT | 57.554 | 42.857 | 5.94 | 0.00 | 46.05 | 3.34 |
1237 | 1623 | 2.469826 | ACATGGCATGTACGTATGACG | 58.530 | 47.619 | 30.56 | 1.24 | 42.78 | 4.35 |
1238 | 1624 | 4.866921 | TCTACATGGCATGTACGTATGAC | 58.133 | 43.478 | 31.06 | 0.00 | 44.38 | 3.06 |
1239 | 1625 | 5.476945 | AGATCTACATGGCATGTACGTATGA | 59.523 | 40.000 | 31.06 | 25.74 | 44.38 | 2.15 |
1240 | 1626 | 5.714047 | AGATCTACATGGCATGTACGTATG | 58.286 | 41.667 | 31.06 | 22.12 | 44.38 | 2.39 |
1241 | 1627 | 5.984695 | AGATCTACATGGCATGTACGTAT | 57.015 | 39.130 | 31.06 | 23.83 | 44.38 | 3.06 |
1242 | 1628 | 5.414765 | CCTAGATCTACATGGCATGTACGTA | 59.585 | 44.000 | 31.06 | 20.89 | 44.38 | 3.57 |
1243 | 1629 | 4.218635 | CCTAGATCTACATGGCATGTACGT | 59.781 | 45.833 | 31.06 | 22.90 | 44.38 | 3.57 |
1244 | 1630 | 4.218635 | ACCTAGATCTACATGGCATGTACG | 59.781 | 45.833 | 31.06 | 25.37 | 44.38 | 3.67 |
1245 | 1631 | 5.336849 | GGACCTAGATCTACATGGCATGTAC | 60.337 | 48.000 | 31.06 | 22.64 | 44.38 | 2.90 |
1246 | 1632 | 4.772624 | GGACCTAGATCTACATGGCATGTA | 59.227 | 45.833 | 31.99 | 31.99 | 44.38 | 2.29 |
1247 | 1633 | 3.580458 | GGACCTAGATCTACATGGCATGT | 59.420 | 47.826 | 33.18 | 33.18 | 46.92 | 3.21 |
1248 | 1634 | 3.367806 | CGGACCTAGATCTACATGGCATG | 60.368 | 52.174 | 25.31 | 25.31 | 0.00 | 4.06 |
1249 | 1635 | 2.828520 | CGGACCTAGATCTACATGGCAT | 59.171 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
1250 | 1636 | 2.239400 | CGGACCTAGATCTACATGGCA | 58.761 | 52.381 | 0.00 | 0.00 | 0.00 | 4.92 |
1251 | 1637 | 1.067495 | GCGGACCTAGATCTACATGGC | 60.067 | 57.143 | 0.00 | 0.00 | 0.00 | 4.40 |
1252 | 1638 | 1.546476 | GGCGGACCTAGATCTACATGG | 59.454 | 57.143 | 0.00 | 1.54 | 0.00 | 3.66 |
1306 | 1693 | 1.079127 | CCTTGGAACGAGGCGACAT | 60.079 | 57.895 | 0.00 | 0.00 | 0.00 | 3.06 |
1364 | 1751 | 3.067833 | GGAGACAGAAGAAAAACCGGAG | 58.932 | 50.000 | 9.46 | 0.00 | 0.00 | 4.63 |
1365 | 1752 | 2.436542 | TGGAGACAGAAGAAAAACCGGA | 59.563 | 45.455 | 9.46 | 0.00 | 35.01 | 5.14 |
1366 | 1753 | 2.846193 | TGGAGACAGAAGAAAAACCGG | 58.154 | 47.619 | 0.00 | 0.00 | 35.01 | 5.28 |
1379 | 1766 | 3.875390 | TGCAGCAGACTGGAGACA | 58.125 | 55.556 | 4.26 | 0.00 | 44.63 | 3.41 |
1383 | 1770 | 1.560505 | TCATACTGCAGCAGACTGGA | 58.439 | 50.000 | 29.70 | 16.39 | 44.63 | 3.86 |
1384 | 1771 | 2.210961 | CATCATACTGCAGCAGACTGG | 58.789 | 52.381 | 29.70 | 14.42 | 44.63 | 4.00 |
1385 | 1772 | 2.742204 | AGCATCATACTGCAGCAGACTG | 60.742 | 50.000 | 29.70 | 22.55 | 44.77 | 3.51 |
1386 | 1773 | 1.485480 | AGCATCATACTGCAGCAGACT | 59.515 | 47.619 | 29.70 | 12.29 | 44.77 | 3.24 |
1387 | 1774 | 1.865970 | GAGCATCATACTGCAGCAGAC | 59.134 | 52.381 | 29.70 | 8.59 | 44.77 | 3.51 |
1388 | 1775 | 1.483415 | TGAGCATCATACTGCAGCAGA | 59.517 | 47.619 | 29.70 | 12.88 | 42.56 | 4.26 |
1389 | 1776 | 1.949465 | TGAGCATCATACTGCAGCAG | 58.051 | 50.000 | 21.54 | 21.54 | 42.56 | 4.24 |
1526 | 1913 | 3.449227 | TGGCGCAGGGACTCGTAG | 61.449 | 66.667 | 10.83 | 0.00 | 34.60 | 3.51 |
1559 | 1946 | 0.107508 | ATGAGGAGCGGTTGATGGTG | 60.108 | 55.000 | 0.00 | 0.00 | 0.00 | 4.17 |
1564 | 1951 | 0.690192 | TGGAAATGAGGAGCGGTTGA | 59.310 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
1570 | 1957 | 2.026822 | TGAAGAGGTGGAAATGAGGAGC | 60.027 | 50.000 | 0.00 | 0.00 | 0.00 | 4.70 |
1571 | 1958 | 3.988976 | TGAAGAGGTGGAAATGAGGAG | 57.011 | 47.619 | 0.00 | 0.00 | 0.00 | 3.69 |
1609 | 1997 | 8.262715 | TCGTAATAACTGAATGAAGAAATGCA | 57.737 | 30.769 | 0.00 | 0.00 | 0.00 | 3.96 |
1653 | 2044 | 8.573885 | GTGATGTGTAACTGGCATACTATACTA | 58.426 | 37.037 | 0.00 | 0.00 | 38.04 | 1.82 |
1659 | 2055 | 4.826274 | AGTGATGTGTAACTGGCATACT | 57.174 | 40.909 | 0.00 | 0.00 | 38.04 | 2.12 |
1660 | 2056 | 5.445939 | CGAAAGTGATGTGTAACTGGCATAC | 60.446 | 44.000 | 0.00 | 0.00 | 38.04 | 2.39 |
1661 | 2057 | 4.629634 | CGAAAGTGATGTGTAACTGGCATA | 59.370 | 41.667 | 0.00 | 0.00 | 38.04 | 3.14 |
1662 | 2058 | 3.436704 | CGAAAGTGATGTGTAACTGGCAT | 59.563 | 43.478 | 0.00 | 0.00 | 38.04 | 4.40 |
1663 | 2059 | 2.805671 | CGAAAGTGATGTGTAACTGGCA | 59.194 | 45.455 | 0.00 | 0.00 | 38.04 | 4.92 |
1678 | 2074 | 4.704540 | TGGTGGCATTTGATAATCGAAAGT | 59.295 | 37.500 | 0.00 | 0.00 | 0.00 | 2.66 |
1712 | 2111 | 1.117150 | GGATGGCTCCAATGCACAAT | 58.883 | 50.000 | 0.00 | 0.00 | 41.64 | 2.71 |
1749 | 2148 | 5.070180 | ACATCATCTAGTTCTCCTGGTGATG | 59.930 | 44.000 | 13.45 | 13.45 | 41.02 | 3.07 |
1785 | 2186 | 8.298140 | ACTCGAGTATTTAGATAAGCATGGTAC | 58.702 | 37.037 | 18.46 | 0.00 | 0.00 | 3.34 |
1791 | 2192 | 7.201145 | GGTCAACTCGAGTATTTAGATAAGCA | 58.799 | 38.462 | 20.39 | 0.00 | 0.00 | 3.91 |
1798 | 2199 | 6.816640 | TCAAATGGGTCAACTCGAGTATTTAG | 59.183 | 38.462 | 20.39 | 13.18 | 0.00 | 1.85 |
1871 | 2274 | 1.066430 | TCGGCATGGGTGTTCTACTTC | 60.066 | 52.381 | 0.00 | 0.00 | 0.00 | 3.01 |
1883 | 2288 | 2.559668 | AGGCATAAAATCATCGGCATGG | 59.440 | 45.455 | 0.00 | 0.00 | 0.00 | 3.66 |
1887 | 2292 | 3.715628 | AACAGGCATAAAATCATCGGC | 57.284 | 42.857 | 0.00 | 0.00 | 0.00 | 5.54 |
1944 | 2350 | 9.632807 | GATAAATAGTTAGACGATCAGCAGATT | 57.367 | 33.333 | 0.00 | 0.00 | 33.72 | 2.40 |
1945 | 2351 | 9.019656 | AGATAAATAGTTAGACGATCAGCAGAT | 57.980 | 33.333 | 0.00 | 0.00 | 37.13 | 2.90 |
1951 | 2357 | 6.863645 | GCAGCAGATAAATAGTTAGACGATCA | 59.136 | 38.462 | 0.00 | 0.00 | 0.00 | 2.92 |
2100 | 2506 | 7.836142 | AGAGGGAAAATGGGGATTTGATATAA | 58.164 | 34.615 | 0.00 | 0.00 | 0.00 | 0.98 |
2113 | 2519 | 5.046288 | AGCTGATTAGAGAGGGAAAATGG | 57.954 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
2123 | 2530 | 5.527951 | CGTAGTTAGTGGAGCTGATTAGAGA | 59.472 | 44.000 | 0.00 | 0.00 | 0.00 | 3.10 |
2146 | 2553 | 4.141855 | ACGAGTACAAAAGGAAAATGCG | 57.858 | 40.909 | 0.00 | 0.00 | 0.00 | 4.73 |
2147 | 2554 | 4.148174 | GCAACGAGTACAAAAGGAAAATGC | 59.852 | 41.667 | 0.00 | 0.00 | 0.00 | 3.56 |
2148 | 2555 | 5.277825 | TGCAACGAGTACAAAAGGAAAATG | 58.722 | 37.500 | 0.00 | 0.00 | 0.00 | 2.32 |
2150 | 2557 | 4.396790 | ACTGCAACGAGTACAAAAGGAAAA | 59.603 | 37.500 | 0.00 | 0.00 | 0.00 | 2.29 |
2151 | 2558 | 3.942748 | ACTGCAACGAGTACAAAAGGAAA | 59.057 | 39.130 | 0.00 | 0.00 | 0.00 | 3.13 |
2152 | 2559 | 3.537580 | ACTGCAACGAGTACAAAAGGAA | 58.462 | 40.909 | 0.00 | 0.00 | 0.00 | 3.36 |
2153 | 2560 | 3.188159 | ACTGCAACGAGTACAAAAGGA | 57.812 | 42.857 | 0.00 | 0.00 | 0.00 | 3.36 |
2154 | 2561 | 3.963383 | AACTGCAACGAGTACAAAAGG | 57.037 | 42.857 | 0.00 | 0.00 | 0.00 | 3.11 |
2281 | 2688 | 6.730507 | TCTTGACCTGATATTGCCATAGGATA | 59.269 | 38.462 | 0.00 | 0.00 | 32.86 | 2.59 |
2282 | 2689 | 5.549228 | TCTTGACCTGATATTGCCATAGGAT | 59.451 | 40.000 | 0.00 | 0.00 | 32.86 | 3.24 |
2289 | 2696 | 5.009410 | CCAATCTTCTTGACCTGATATTGCC | 59.991 | 44.000 | 0.00 | 0.00 | 0.00 | 4.52 |
2291 | 2698 | 7.870509 | TTCCAATCTTCTTGACCTGATATTG | 57.129 | 36.000 | 0.00 | 0.00 | 0.00 | 1.90 |
2292 | 2699 | 8.884124 | TTTTCCAATCTTCTTGACCTGATATT | 57.116 | 30.769 | 0.00 | 0.00 | 0.00 | 1.28 |
2293 | 2700 | 9.484806 | AATTTTCCAATCTTCTTGACCTGATAT | 57.515 | 29.630 | 0.00 | 0.00 | 0.00 | 1.63 |
2398 | 2805 | 2.625790 | ACCTCGTGCTAGATTCCTCATC | 59.374 | 50.000 | 0.00 | 0.00 | 0.00 | 2.92 |
2504 | 2916 | 2.806608 | AAGCCATGTGTCAAGCTTTG | 57.193 | 45.000 | 0.00 | 0.00 | 42.74 | 2.77 |
2574 | 2992 | 4.510340 | ACAAGACGACCAACACAAGTTATC | 59.490 | 41.667 | 0.00 | 0.00 | 35.85 | 1.75 |
2680 | 3098 | 2.503331 | TGAATTGAGAACACGCATGGT | 58.497 | 42.857 | 0.00 | 0.00 | 0.00 | 3.55 |
2688 | 3106 | 6.446318 | GCAAGTATGGTTTGAATTGAGAACA | 58.554 | 36.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2696 | 3114 | 3.417101 | TGTCGGCAAGTATGGTTTGAAT | 58.583 | 40.909 | 0.00 | 0.00 | 0.00 | 2.57 |
2697 | 3115 | 2.852449 | TGTCGGCAAGTATGGTTTGAA | 58.148 | 42.857 | 0.00 | 0.00 | 0.00 | 2.69 |
2703 | 3121 | 2.332063 | AGGATTGTCGGCAAGTATGG | 57.668 | 50.000 | 9.01 | 0.00 | 38.10 | 2.74 |
2715 | 3133 | 5.424757 | TGGAACGATCGATTTTAGGATTGT | 58.575 | 37.500 | 24.34 | 0.00 | 38.60 | 2.71 |
2721 | 3139 | 6.344572 | TGTTGATGGAACGATCGATTTTAG | 57.655 | 37.500 | 24.34 | 0.00 | 37.38 | 1.85 |
2722 | 3140 | 6.714492 | CATGTTGATGGAACGATCGATTTTA | 58.286 | 36.000 | 24.34 | 4.21 | 37.38 | 1.52 |
2723 | 3141 | 5.572211 | CATGTTGATGGAACGATCGATTTT | 58.428 | 37.500 | 24.34 | 5.50 | 37.38 | 1.82 |
2725 | 3143 | 4.801147 | CATGTTGATGGAACGATCGATT | 57.199 | 40.909 | 24.34 | 12.31 | 37.38 | 3.34 |
2741 | 3159 | 6.887626 | AAAAACCGTCTATTGTACCATGTT | 57.112 | 33.333 | 0.00 | 0.00 | 0.00 | 2.71 |
2787 | 3207 | 1.593469 | CAGCACATCAGAAGATCAGCG | 59.407 | 52.381 | 0.00 | 0.00 | 36.62 | 5.18 |
2884 | 3304 | 3.181439 | CCTCAAACTTCTCCAGGAAACCT | 60.181 | 47.826 | 0.00 | 0.00 | 33.07 | 3.50 |
2887 | 3307 | 3.496870 | GCTCCTCAAACTTCTCCAGGAAA | 60.497 | 47.826 | 0.00 | 0.00 | 32.74 | 3.13 |
2902 | 3322 | 3.226429 | GACGTGGCAGTGCTCCTCA | 62.226 | 63.158 | 16.11 | 0.78 | 0.00 | 3.86 |
2975 | 3395 | 9.930693 | AGTATACGTCTCTTTCTCAAGAATTTT | 57.069 | 29.630 | 0.00 | 0.00 | 38.63 | 1.82 |
2982 | 3402 | 6.095580 | AGCATCAGTATACGTCTCTTTCTCAA | 59.904 | 38.462 | 0.00 | 0.00 | 0.00 | 3.02 |
2983 | 3403 | 5.590663 | AGCATCAGTATACGTCTCTTTCTCA | 59.409 | 40.000 | 0.00 | 0.00 | 0.00 | 3.27 |
2995 | 3415 | 2.831333 | ACAGCAGCAGCATCAGTATAC | 58.169 | 47.619 | 3.17 | 0.00 | 45.49 | 1.47 |
2998 | 3418 | 3.548745 | ATTACAGCAGCAGCATCAGTA | 57.451 | 42.857 | 3.17 | 0.00 | 45.49 | 2.74 |
2999 | 3419 | 2.414994 | ATTACAGCAGCAGCATCAGT | 57.585 | 45.000 | 3.17 | 0.00 | 45.49 | 3.41 |
3000 | 3420 | 5.212934 | CAATTATTACAGCAGCAGCATCAG | 58.787 | 41.667 | 3.17 | 0.00 | 45.49 | 2.90 |
3001 | 3421 | 4.498513 | GCAATTATTACAGCAGCAGCATCA | 60.499 | 41.667 | 3.17 | 0.00 | 45.49 | 3.07 |
3002 | 3422 | 3.979495 | GCAATTATTACAGCAGCAGCATC | 59.021 | 43.478 | 3.17 | 0.00 | 45.49 | 3.91 |
3003 | 3423 | 3.549423 | CGCAATTATTACAGCAGCAGCAT | 60.549 | 43.478 | 3.17 | 0.00 | 45.49 | 3.79 |
3195 | 3617 | 4.021229 | AGCATCACATTCCATGACACAAT | 58.979 | 39.130 | 0.00 | 0.00 | 0.00 | 2.71 |
3290 | 3716 | 0.871057 | CACACACACACACACACACA | 59.129 | 50.000 | 0.00 | 0.00 | 0.00 | 3.72 |
3291 | 3717 | 0.871722 | ACACACACACACACACACAC | 59.128 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
3292 | 3718 | 0.871057 | CACACACACACACACACACA | 59.129 | 50.000 | 0.00 | 0.00 | 0.00 | 3.72 |
3301 | 3727 | 0.871722 | ACACACACACACACACACAC | 59.128 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
3302 | 3728 | 1.265365 | CAACACACACACACACACACA | 59.735 | 47.619 | 0.00 | 0.00 | 0.00 | 3.72 |
3303 | 3729 | 1.265635 | ACAACACACACACACACACAC | 59.734 | 47.619 | 0.00 | 0.00 | 0.00 | 3.82 |
3304 | 3730 | 1.598882 | ACAACACACACACACACACA | 58.401 | 45.000 | 0.00 | 0.00 | 0.00 | 3.72 |
3305 | 3731 | 2.697431 | AACAACACACACACACACAC | 57.303 | 45.000 | 0.00 | 0.00 | 0.00 | 3.82 |
3345 | 3771 | 4.238514 | CCAAACGCCTCTGCTATATAGAC | 58.761 | 47.826 | 14.16 | 5.69 | 34.43 | 2.59 |
3347 | 3773 | 3.990469 | CACCAAACGCCTCTGCTATATAG | 59.010 | 47.826 | 5.30 | 5.30 | 34.43 | 1.31 |
3348 | 3774 | 3.386726 | ACACCAAACGCCTCTGCTATATA | 59.613 | 43.478 | 0.00 | 0.00 | 34.43 | 0.86 |
3349 | 3775 | 2.170607 | ACACCAAACGCCTCTGCTATAT | 59.829 | 45.455 | 0.00 | 0.00 | 34.43 | 0.86 |
3395 | 3828 | 3.183775 | CACGGTTAACAAAACTCTCTCCG | 59.816 | 47.826 | 8.10 | 0.00 | 40.94 | 4.63 |
3412 | 3845 | 0.603569 | CAGCCTACAGAGAACACGGT | 59.396 | 55.000 | 0.00 | 0.00 | 0.00 | 4.83 |
3415 | 3848 | 4.993029 | AGATACAGCCTACAGAGAACAC | 57.007 | 45.455 | 0.00 | 0.00 | 0.00 | 3.32 |
3420 | 3853 | 6.701145 | TTACAGAAGATACAGCCTACAGAG | 57.299 | 41.667 | 0.00 | 0.00 | 0.00 | 3.35 |
3422 | 3855 | 7.013750 | TCTCATTACAGAAGATACAGCCTACAG | 59.986 | 40.741 | 0.00 | 0.00 | 0.00 | 2.74 |
3471 | 3904 | 3.754323 | CGTTTTCTTATGGGGTAAGCACA | 59.246 | 43.478 | 0.00 | 0.00 | 39.73 | 4.57 |
3480 | 3913 | 1.396996 | CGTGCTCCGTTTTCTTATGGG | 59.603 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
3492 | 3925 | 2.004583 | TCAACTTAATCCGTGCTCCG | 57.995 | 50.000 | 0.00 | 0.00 | 0.00 | 4.63 |
3495 | 3928 | 5.730550 | TCATAGTTCAACTTAATCCGTGCT | 58.269 | 37.500 | 0.00 | 0.00 | 0.00 | 4.40 |
3496 | 3929 | 6.417191 | TTCATAGTTCAACTTAATCCGTGC | 57.583 | 37.500 | 0.00 | 0.00 | 0.00 | 5.34 |
3497 | 3930 | 8.450964 | ACAATTCATAGTTCAACTTAATCCGTG | 58.549 | 33.333 | 0.00 | 0.00 | 0.00 | 4.94 |
3498 | 3931 | 8.561738 | ACAATTCATAGTTCAACTTAATCCGT | 57.438 | 30.769 | 0.00 | 0.00 | 0.00 | 4.69 |
3499 | 3932 | 9.840427 | AAACAATTCATAGTTCAACTTAATCCG | 57.160 | 29.630 | 0.00 | 0.00 | 0.00 | 4.18 |
3505 | 3938 | 9.744468 | GGTTACAAACAATTCATAGTTCAACTT | 57.256 | 29.630 | 0.00 | 0.00 | 0.00 | 2.66 |
3506 | 3939 | 8.357402 | GGGTTACAAACAATTCATAGTTCAACT | 58.643 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
3507 | 3940 | 8.138712 | TGGGTTACAAACAATTCATAGTTCAAC | 58.861 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
3508 | 3941 | 8.239038 | TGGGTTACAAACAATTCATAGTTCAA | 57.761 | 30.769 | 0.00 | 0.00 | 0.00 | 2.69 |
3509 | 3942 | 7.825331 | TGGGTTACAAACAATTCATAGTTCA | 57.175 | 32.000 | 0.00 | 0.00 | 0.00 | 3.18 |
3510 | 3943 | 8.519526 | TGATGGGTTACAAACAATTCATAGTTC | 58.480 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
3511 | 3944 | 8.415950 | TGATGGGTTACAAACAATTCATAGTT | 57.584 | 30.769 | 0.00 | 0.00 | 0.00 | 2.24 |
3512 | 3945 | 8.415950 | TTGATGGGTTACAAACAATTCATAGT | 57.584 | 30.769 | 0.00 | 0.00 | 0.00 | 2.12 |
3513 | 3946 | 8.739039 | TCTTGATGGGTTACAAACAATTCATAG | 58.261 | 33.333 | 0.00 | 0.00 | 32.22 | 2.23 |
3516 | 3949 | 6.968263 | TCTTGATGGGTTACAAACAATTCA | 57.032 | 33.333 | 0.00 | 0.00 | 32.22 | 2.57 |
3517 | 3950 | 7.872483 | ACATTCTTGATGGGTTACAAACAATTC | 59.128 | 33.333 | 0.00 | 0.00 | 40.21 | 2.17 |
3520 | 3955 | 6.723298 | ACATTCTTGATGGGTTACAAACAA | 57.277 | 33.333 | 0.00 | 0.00 | 40.21 | 2.83 |
3522 | 3957 | 5.925969 | CCAACATTCTTGATGGGTTACAAAC | 59.074 | 40.000 | 0.00 | 0.00 | 41.01 | 2.93 |
3539 | 3974 | 7.736447 | TTTTTGTGAGAAAAACACCAACATT | 57.264 | 28.000 | 0.00 | 0.00 | 37.45 | 2.71 |
3568 | 4003 | 4.401202 | ACCACTCCATGAAACGTTCTTTTT | 59.599 | 37.500 | 0.00 | 0.00 | 0.00 | 1.94 |
3580 | 4029 | 1.065926 | GCACAGATCACCACTCCATGA | 60.066 | 52.381 | 0.00 | 0.00 | 0.00 | 3.07 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.