Multiple sequence alignment - TraesCS1B01G211100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G211100 chr1B 100.000 4419 0 0 1 4419 384299212 384294794 0.000000e+00 8161
1 TraesCS1B01G211100 chr1B 87.216 352 34 6 1 351 34777375 34777716 1.490000e-104 390
2 TraesCS1B01G211100 chr1B 87.216 352 34 6 1 351 34794703 34795044 1.490000e-104 390
3 TraesCS1B01G211100 chr1D 91.296 2746 151 44 11 2696 282949413 282946696 0.000000e+00 3666
4 TraesCS1B01G211100 chr1D 89.520 1126 70 26 2714 3805 282946708 282945597 0.000000e+00 1382
5 TraesCS1B01G211100 chr1D 86.061 660 39 24 3808 4415 448219642 448218984 0.000000e+00 660
6 TraesCS1B01G211100 chr1A 92.857 1876 87 25 808 2660 354937719 354935868 0.000000e+00 2678
7 TraesCS1B01G211100 chr1A 89.138 1114 73 18 2701 3805 354935653 354934579 0.000000e+00 1343
8 TraesCS1B01G211100 chr1A 88.918 776 48 21 1 765 354938551 354937803 0.000000e+00 922
9 TraesCS1B01G211100 chr3B 91.200 625 32 13 3809 4415 347878616 347877997 0.000000e+00 828
10 TraesCS1B01G211100 chr3B 88.462 624 62 8 3800 4415 777171530 777172151 0.000000e+00 745
11 TraesCS1B01G211100 chr3B 82.743 452 47 15 3806 4229 757720258 757719810 1.500000e-99 374
12 TraesCS1B01G211100 chr3B 81.416 452 53 15 3806 4229 757722768 757722320 1.520000e-89 340
13 TraesCS1B01G211100 chr2B 88.361 653 36 18 3801 4415 775058285 775058935 0.000000e+00 749
14 TraesCS1B01G211100 chr2B 85.761 309 34 7 2 308 65473116 65473416 7.130000e-83 318
15 TraesCS1B01G211100 chr4A 86.698 639 54 13 3802 4415 642823371 642822739 0.000000e+00 680
16 TraesCS1B01G211100 chr4A 83.077 260 28 7 11 270 196609500 196609257 5.750000e-54 222
17 TraesCS1B01G211100 chr4A 90.000 120 11 1 355 473 196609226 196609107 2.130000e-33 154
18 TraesCS1B01G211100 chr7B 85.246 671 38 15 3806 4415 624187428 624186758 6.240000e-178 634
19 TraesCS1B01G211100 chr7B 91.837 245 17 3 3803 4044 594709995 594710239 5.470000e-89 339
20 TraesCS1B01G211100 chr3D 84.753 669 45 33 3803 4415 555909366 555910033 6.280000e-173 617
21 TraesCS1B01G211100 chr3D 84.454 669 47 33 3803 4415 555902032 555902699 1.360000e-169 606
22 TraesCS1B01G211100 chr5D 85.689 573 28 17 3897 4415 563849092 563849664 4.990000e-154 555
23 TraesCS1B01G211100 chr5D 82.805 663 62 24 3802 4415 375456081 375456740 3.010000e-151 545
24 TraesCS1B01G211100 chr4B 92.288 389 22 2 4035 4415 129542452 129542840 3.010000e-151 545
25 TraesCS1B01G211100 chr6D 95.254 295 13 1 4121 4415 372162376 372162083 2.410000e-127 466
26 TraesCS1B01G211100 chr7D 89.544 373 25 12 4060 4419 532570234 532570605 1.120000e-125 460
27 TraesCS1B01G211100 chr7D 93.980 299 14 1 4121 4415 153417983 153418281 2.420000e-122 449
28 TraesCS1B01G211100 chr4D 91.701 241 18 2 3806 4044 484121235 484120995 2.550000e-87 333
29 TraesCS1B01G211100 chr5B 88.618 123 13 1 354 475 397964580 397964702 9.900000e-32 148


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G211100 chr1B 384294794 384299212 4418 True 8161.000000 8161 100.000000 1 4419 1 chr1B.!!$R1 4418
1 TraesCS1B01G211100 chr1D 282945597 282949413 3816 True 2524.000000 3666 90.408000 11 3805 2 chr1D.!!$R2 3794
2 TraesCS1B01G211100 chr1D 448218984 448219642 658 True 660.000000 660 86.061000 3808 4415 1 chr1D.!!$R1 607
3 TraesCS1B01G211100 chr1A 354934579 354938551 3972 True 1647.666667 2678 90.304333 1 3805 3 chr1A.!!$R1 3804
4 TraesCS1B01G211100 chr3B 347877997 347878616 619 True 828.000000 828 91.200000 3809 4415 1 chr3B.!!$R1 606
5 TraesCS1B01G211100 chr3B 777171530 777172151 621 False 745.000000 745 88.462000 3800 4415 1 chr3B.!!$F1 615
6 TraesCS1B01G211100 chr3B 757719810 757722768 2958 True 357.000000 374 82.079500 3806 4229 2 chr3B.!!$R2 423
7 TraesCS1B01G211100 chr2B 775058285 775058935 650 False 749.000000 749 88.361000 3801 4415 1 chr2B.!!$F2 614
8 TraesCS1B01G211100 chr4A 642822739 642823371 632 True 680.000000 680 86.698000 3802 4415 1 chr4A.!!$R1 613
9 TraesCS1B01G211100 chr7B 624186758 624187428 670 True 634.000000 634 85.246000 3806 4415 1 chr7B.!!$R1 609
10 TraesCS1B01G211100 chr3D 555909366 555910033 667 False 617.000000 617 84.753000 3803 4415 1 chr3D.!!$F2 612
11 TraesCS1B01G211100 chr3D 555902032 555902699 667 False 606.000000 606 84.454000 3803 4415 1 chr3D.!!$F1 612
12 TraesCS1B01G211100 chr5D 563849092 563849664 572 False 555.000000 555 85.689000 3897 4415 1 chr5D.!!$F2 518
13 TraesCS1B01G211100 chr5D 375456081 375456740 659 False 545.000000 545 82.805000 3802 4415 1 chr5D.!!$F1 613

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
964 1027 0.319555 CTGCTTCCGTCTCCGTTTCA 60.320 55.0 0.00 0.0 0.00 2.69 F
1654 1734 0.179089 CCACGCTCTTCATCCAGAGG 60.179 60.0 0.08 0.0 40.79 3.69 F
2377 2473 0.531974 ATTTGTCGGCGGTCGCATAT 60.532 50.0 17.21 0.0 44.11 1.78 F
2422 2518 0.748005 ATGCCGCGCTAGGTTTCAAT 60.748 50.0 5.56 0.0 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2561 2661 0.460987 CGTCACCAGCTCCAGGATTC 60.461 60.0 0.0 0.0 0.0 2.52 R
3257 3556 0.327924 CCATGAGCACTGTACCCCAA 59.672 55.0 0.0 0.0 0.0 4.12 R
3260 3559 0.328258 AACCCATGAGCACTGTACCC 59.672 55.0 0.0 0.0 0.0 3.69 R
3865 4207 0.883833 AGGCTGCATTTCAAGAACCG 59.116 50.0 0.5 0.0 0.0 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 1.448540 CGAAGAGTGGCTGGCGAAT 60.449 57.895 0.00 0.00 0.00 3.34
96 97 4.101448 GATCGCTGGGTGGCAGGT 62.101 66.667 0.00 0.00 0.00 4.00
152 153 9.343103 CGTCATGGTATAGTATACTTTGCTTAG 57.657 37.037 17.74 1.87 0.00 2.18
173 174 7.429920 GCTTAGAATCTACAAACAGAGTAGTCG 59.570 40.741 0.00 0.00 39.86 4.18
177 178 7.823310 AGAATCTACAAACAGAGTAGTCGAGTA 59.177 37.037 0.00 0.00 39.86 2.59
184 185 7.389884 ACAAACAGAGTAGTCGAGTAGAACATA 59.610 37.037 0.00 0.00 0.00 2.29
204 205 9.535270 GAACATAAAATTCTTGAGAAAGAGACG 57.465 33.333 0.00 0.00 37.61 4.18
210 211 9.930693 AAAATTCTTGAGAAAGAGACGTATACT 57.069 29.630 0.56 0.00 37.61 2.12
211 212 8.918961 AATTCTTGAGAAAGAGACGTATACTG 57.081 34.615 0.56 0.00 37.61 2.74
212 213 7.683437 TTCTTGAGAAAGAGACGTATACTGA 57.317 36.000 0.56 0.00 0.00 3.41
404 406 4.439057 AGCGAGAAGTTGTTTAGTTGTGA 58.561 39.130 0.00 0.00 0.00 3.58
510 516 0.392327 TGGTGGAGTGTGTGTGTGTG 60.392 55.000 0.00 0.00 0.00 3.82
511 517 0.392461 GGTGGAGTGTGTGTGTGTGT 60.392 55.000 0.00 0.00 0.00 3.72
512 518 0.726827 GTGGAGTGTGTGTGTGTGTG 59.273 55.000 0.00 0.00 0.00 3.82
513 519 0.323302 TGGAGTGTGTGTGTGTGTGT 59.677 50.000 0.00 0.00 0.00 3.72
514 520 0.726827 GGAGTGTGTGTGTGTGTGTG 59.273 55.000 0.00 0.00 0.00 3.82
554 560 4.466567 TTCACAGTTTTGTACGCAGATG 57.533 40.909 0.00 0.00 35.25 2.90
556 562 3.493129 TCACAGTTTTGTACGCAGATGTC 59.507 43.478 0.00 0.00 35.25 3.06
557 563 3.494626 CACAGTTTTGTACGCAGATGTCT 59.505 43.478 0.00 0.00 35.25 3.41
558 564 4.684242 CACAGTTTTGTACGCAGATGTCTA 59.316 41.667 0.00 0.00 35.25 2.59
582 591 1.300620 CAGAGGCGTTTGGTGTCGA 60.301 57.895 0.00 0.00 0.00 4.20
604 617 2.547211 TCGAGCGTCTTACCTACTATGC 59.453 50.000 0.00 0.00 0.00 3.14
621 634 5.790593 ACTATGCGGAGAGAGTTTTGTTAA 58.209 37.500 5.28 0.00 0.00 2.01
624 637 2.157085 GCGGAGAGAGTTTTGTTAACCG 59.843 50.000 2.48 0.00 40.60 4.44
629 642 5.277202 GGAGAGAGTTTTGTTAACCGTGTTC 60.277 44.000 2.48 0.00 0.00 3.18
631 644 5.522824 AGAGAGTTTTGTTAACCGTGTTCTC 59.477 40.000 2.48 10.04 0.00 2.87
671 684 6.146184 TCTGTAATGAGAGAAAAGAAGTTGCG 59.854 38.462 0.00 0.00 0.00 4.85
674 687 0.868406 AGAGAAAAGAAGTTGCGCCG 59.132 50.000 4.18 0.00 0.00 6.46
701 714 5.715434 TTGTGCTTACCCCATAAGAAAAC 57.285 39.130 0.00 0.00 42.75 2.43
704 717 3.009253 TGCTTACCCCATAAGAAAACGGA 59.991 43.478 0.00 0.00 42.75 4.69
705 718 3.626217 GCTTACCCCATAAGAAAACGGAG 59.374 47.826 0.00 0.00 42.75 4.63
706 719 2.124277 ACCCCATAAGAAAACGGAGC 57.876 50.000 0.00 0.00 0.00 4.70
707 720 1.353022 ACCCCATAAGAAAACGGAGCA 59.647 47.619 0.00 0.00 0.00 4.26
708 721 1.743394 CCCCATAAGAAAACGGAGCAC 59.257 52.381 0.00 0.00 0.00 4.40
720 733 2.004583 CGGAGCACGGATTAAGTTGA 57.995 50.000 0.00 0.00 39.42 3.18
721 734 2.343101 CGGAGCACGGATTAAGTTGAA 58.657 47.619 0.00 0.00 39.42 2.69
722 735 2.093783 CGGAGCACGGATTAAGTTGAAC 59.906 50.000 0.00 0.00 39.42 3.18
725 738 5.116882 GGAGCACGGATTAAGTTGAACTAT 58.883 41.667 0.00 0.00 0.00 2.12
726 739 5.006746 GGAGCACGGATTAAGTTGAACTATG 59.993 44.000 0.00 0.00 0.00 2.23
729 744 6.823689 AGCACGGATTAAGTTGAACTATGAAT 59.176 34.615 0.00 0.00 0.00 2.57
731 746 7.429340 GCACGGATTAAGTTGAACTATGAATTG 59.571 37.037 0.00 0.12 0.00 2.32
748 763 6.968263 TGAATTGTTTGTAACCCATCAAGA 57.032 33.333 0.00 0.00 0.00 3.02
752 767 6.723298 TTGTTTGTAACCCATCAAGAATGT 57.277 33.333 0.00 0.00 33.13 2.71
755 770 5.720371 TTGTAACCCATCAAGAATGTTGG 57.280 39.130 0.00 0.00 43.32 3.77
765 780 6.421801 CCATCAAGAATGTTGGTGTTTTTCTC 59.578 38.462 2.70 0.00 40.23 2.87
766 781 6.522625 TCAAGAATGTTGGTGTTTTTCTCA 57.477 33.333 0.00 0.00 0.00 3.27
767 782 6.329496 TCAAGAATGTTGGTGTTTTTCTCAC 58.671 36.000 0.00 0.00 35.36 3.51
768 783 5.913137 AGAATGTTGGTGTTTTTCTCACA 57.087 34.783 0.00 0.00 37.52 3.58
769 784 6.279513 AGAATGTTGGTGTTTTTCTCACAA 57.720 33.333 0.00 0.00 37.52 3.33
770 785 6.696411 AGAATGTTGGTGTTTTTCTCACAAA 58.304 32.000 0.00 0.00 37.52 2.83
771 786 7.158021 AGAATGTTGGTGTTTTTCTCACAAAA 58.842 30.769 0.00 0.00 37.52 2.44
772 787 7.659390 AGAATGTTGGTGTTTTTCTCACAAAAA 59.341 29.630 0.00 0.00 37.52 1.94
804 852 2.699954 ACGTTTCATGGAGTGGTGATC 58.300 47.619 0.00 0.00 0.00 2.92
964 1027 0.319555 CTGCTTCCGTCTCCGTTTCA 60.320 55.000 0.00 0.00 0.00 2.69
1116 1179 4.619227 ACGTCGCACCAACCCAGG 62.619 66.667 0.00 0.00 0.00 4.45
1191 1254 2.036414 TGCAGCTCCTCTCCTCGT 59.964 61.111 0.00 0.00 0.00 4.18
1203 1266 3.443925 CCTCGTGCCTCGCTCTCA 61.444 66.667 0.00 0.00 39.67 3.27
1355 1421 1.221213 AGTGCTCCTCCTCCTCCTCT 61.221 60.000 0.00 0.00 0.00 3.69
1425 1501 9.413048 GTATATTCTTATCCTCTGCACTTGTAC 57.587 37.037 0.00 0.00 0.00 2.90
1439 1519 6.267817 TGCACTTGTACGTATGTATAGGTTC 58.732 40.000 0.00 1.34 31.17 3.62
1483 1563 4.170062 CTTGGCATCGTGCTGGCG 62.170 66.667 9.31 0.00 44.28 5.69
1531 1611 2.332654 GGCCGCGTCCATCAAGTTT 61.333 57.895 0.00 0.00 0.00 2.66
1652 1732 1.219124 GCCACGCTCTTCATCCAGA 59.781 57.895 0.00 0.00 0.00 3.86
1654 1734 0.179089 CCACGCTCTTCATCCAGAGG 60.179 60.000 0.08 0.00 40.79 3.69
1744 1824 1.523258 CGGCCTCAAGATCTGCCTG 60.523 63.158 17.15 8.93 41.80 4.85
1797 1880 1.190833 CCACTCAGTCCTGTCCTGCT 61.191 60.000 0.00 0.00 0.00 4.24
1809 1892 4.761739 TCCTGTCCTGCTACAAGATTTTTG 59.238 41.667 0.00 0.00 0.00 2.44
1849 1933 2.421424 GTCCTCGATGCTGCATTTTTCT 59.579 45.455 17.36 0.00 0.00 2.52
1854 1938 5.389098 CCTCGATGCTGCATTTTTCTTTTTG 60.389 40.000 17.36 0.00 0.00 2.44
2138 2222 3.831911 ACATGGTTGGTTCTGGGTAATTG 59.168 43.478 0.00 0.00 0.00 2.32
2141 2225 4.746466 TGGTTGGTTCTGGGTAATTGATT 58.254 39.130 0.00 0.00 0.00 2.57
2274 2370 1.271543 TGCATTTGCCTGACTACAGCT 60.272 47.619 0.00 0.00 42.25 4.24
2281 2377 5.614324 TTGCCTGACTACAGCTTATATGT 57.386 39.130 0.00 0.00 42.25 2.29
2282 2378 4.948847 TGCCTGACTACAGCTTATATGTG 58.051 43.478 0.00 0.00 42.25 3.21
2283 2379 4.202253 TGCCTGACTACAGCTTATATGTGG 60.202 45.833 0.00 0.00 42.25 4.17
2289 2385 5.788450 ACTACAGCTTATATGTGGATGCTC 58.212 41.667 0.00 0.00 33.73 4.26
2291 2387 4.892433 ACAGCTTATATGTGGATGCTCTC 58.108 43.478 0.00 0.00 0.00 3.20
2306 2402 2.289444 TGCTCTCTTTTCAGGTTACCGG 60.289 50.000 0.00 0.00 0.00 5.28
2377 2473 0.531974 ATTTGTCGGCGGTCGCATAT 60.532 50.000 17.21 0.00 44.11 1.78
2407 2503 2.280865 GGGTCCGGAATCGATGCC 60.281 66.667 13.03 13.03 39.00 4.40
2419 2515 2.871427 CGATGCCGCGCTAGGTTTC 61.871 63.158 5.56 0.97 0.00 2.78
2422 2518 0.748005 ATGCCGCGCTAGGTTTCAAT 60.748 50.000 5.56 0.00 0.00 2.57
2484 2580 4.630894 TTCACAACAGTTGCCTTGTAAG 57.369 40.909 13.56 0.00 0.00 2.34
2499 2595 4.870426 CCTTGTAAGTGCGGCCATATATAG 59.130 45.833 2.24 0.00 0.00 1.31
2561 2661 2.174334 CCTGACAAAGGTGCCATCG 58.826 57.895 0.00 0.00 41.74 3.84
2591 2691 1.229051 TGGTGACGTCCTGATGGGA 60.229 57.895 14.12 0.00 42.77 4.37
2660 2760 8.268878 AGCAGAGAAAGGTATATGTAATTCCT 57.731 34.615 0.00 0.00 0.00 3.36
2664 2764 9.608718 AGAGAAAGGTATATGTAATTCCTAGCT 57.391 33.333 0.00 0.00 0.00 3.32
2684 2784 5.349824 GCTAACTAGCTGGCATTGTTATC 57.650 43.478 0.00 0.00 45.62 1.75
2698 2798 6.346838 GGCATTGTTATCTTTGCAACACTTTC 60.347 38.462 0.00 0.00 36.82 2.62
2736 3026 2.025589 TGCAACACTGTTACGGTTGA 57.974 45.000 15.10 2.38 43.41 3.18
2757 3048 7.872993 GGTTGATCTGTATCGAATCCTGATAAA 59.127 37.037 0.00 0.00 34.60 1.40
2766 3057 4.042398 CGAATCCTGATAAATCGTGTCGT 58.958 43.478 0.00 0.00 0.00 4.34
2784 3078 3.644823 TCGTTGTCGAATTCAGCTTGTA 58.355 40.909 6.22 0.00 43.34 2.41
2820 3114 2.093783 AGAAATTTTCACGTCGATCGCC 59.906 45.455 11.09 0.00 44.19 5.54
2826 3120 2.125713 ACGTCGATCGCCATTGCA 60.126 55.556 11.09 0.00 44.19 4.08
2865 3159 1.443407 CACAGCCATCCTAGGACGG 59.557 63.158 19.98 19.98 0.00 4.79
2866 3160 1.001760 ACAGCCATCCTAGGACGGT 59.998 57.895 24.39 15.15 29.01 4.83
2898 3192 2.007608 GAGCCAACGTTAACCATCTCC 58.992 52.381 0.00 0.00 0.00 3.71
2952 3246 4.934602 GCTCTGAGCATAGTGTCTTTCTTT 59.065 41.667 24.02 0.00 41.89 2.52
3026 3324 6.889301 ATTTGGAATGTGGTGATATAGCTG 57.111 37.500 0.00 0.00 0.00 4.24
3182 3480 1.144936 CAGAGGGATCGGAACAGCC 59.855 63.158 0.00 0.00 0.00 4.85
3220 3518 3.244911 TGAAACTTTGGGATCCTGTCCTC 60.245 47.826 12.58 7.11 46.91 3.71
3221 3519 2.350863 ACTTTGGGATCCTGTCCTCT 57.649 50.000 12.58 0.00 46.91 3.69
3255 3554 2.819608 AGCGTGCTAAATTTGATGGTGT 59.180 40.909 0.00 0.00 0.00 4.16
3256 3555 3.255642 AGCGTGCTAAATTTGATGGTGTT 59.744 39.130 0.00 0.00 0.00 3.32
3257 3556 3.987220 GCGTGCTAAATTTGATGGTGTTT 59.013 39.130 0.00 0.00 0.00 2.83
3258 3557 4.447389 GCGTGCTAAATTTGATGGTGTTTT 59.553 37.500 0.00 0.00 0.00 2.43
3259 3558 5.612276 GCGTGCTAAATTTGATGGTGTTTTG 60.612 40.000 0.00 0.00 0.00 2.44
3260 3559 5.107530 CGTGCTAAATTTGATGGTGTTTTGG 60.108 40.000 0.00 0.00 0.00 3.28
3264 3563 5.896073 AAATTTGATGGTGTTTTGGGGTA 57.104 34.783 0.00 0.00 0.00 3.69
3358 3657 2.258286 GCGCTCACCGGCATTTTT 59.742 55.556 0.00 0.00 37.44 1.94
3364 3663 1.079888 CACCGGCATTTTTGGCTCC 60.080 57.895 0.00 0.00 0.00 4.70
3426 3725 1.119684 ATAGCCGGCTGACACACATA 58.880 50.000 38.98 16.30 0.00 2.29
3427 3726 1.119684 TAGCCGGCTGACACACATAT 58.880 50.000 38.98 10.70 0.00 1.78
3513 3812 3.788227 TGGTAAGTGCTTGGAGAACAT 57.212 42.857 0.00 0.00 0.00 2.71
3597 3896 3.088789 AGGTGTGAGTAGTACTCCCTG 57.911 52.381 24.32 0.00 44.44 4.45
3654 3953 7.654923 GCTTTTCTCCATGTGATTTTTCTTCTT 59.345 33.333 0.00 0.00 0.00 2.52
3687 3990 1.187567 GCCTGATTGGTTTGGTGCCT 61.188 55.000 0.00 0.00 38.35 4.75
3690 3993 1.468520 CTGATTGGTTTGGTGCCTACG 59.531 52.381 0.00 0.00 0.00 3.51
3701 4038 4.637771 GCCTACGATTGGCTGGTT 57.362 55.556 9.95 0.00 46.38 3.67
3702 4039 2.098293 GCCTACGATTGGCTGGTTG 58.902 57.895 9.95 0.00 46.38 3.77
3703 4040 1.376609 GCCTACGATTGGCTGGTTGG 61.377 60.000 9.95 0.00 46.38 3.77
3704 4041 1.376609 CCTACGATTGGCTGGTTGGC 61.377 60.000 0.00 0.00 42.18 4.52
3705 4042 0.392998 CTACGATTGGCTGGTTGGCT 60.393 55.000 0.00 0.00 42.34 4.75
3706 4043 0.906066 TACGATTGGCTGGTTGGCTA 59.094 50.000 0.00 0.00 42.34 3.93
3707 4044 0.676782 ACGATTGGCTGGTTGGCTAC 60.677 55.000 0.00 0.00 42.34 3.58
3708 4045 0.676466 CGATTGGCTGGTTGGCTACA 60.676 55.000 0.80 0.00 42.34 2.74
3709 4046 1.544724 GATTGGCTGGTTGGCTACAA 58.455 50.000 0.80 0.00 42.34 2.41
3710 4047 1.892474 GATTGGCTGGTTGGCTACAAA 59.108 47.619 0.80 0.00 42.34 2.83
3711 4048 2.008242 TTGGCTGGTTGGCTACAAAT 57.992 45.000 0.80 0.00 42.34 2.32
3712 4049 2.008242 TGGCTGGTTGGCTACAAATT 57.992 45.000 0.80 0.00 42.34 1.82
3713 4050 1.617850 TGGCTGGTTGGCTACAAATTG 59.382 47.619 0.80 0.00 42.34 2.32
3714 4051 1.066929 GGCTGGTTGGCTACAAATTGG 60.067 52.381 0.80 0.00 38.54 3.16
3720 4057 4.407296 TGGTTGGCTACAAATTGGTTCTTT 59.593 37.500 0.80 0.00 38.54 2.52
3736 4073 4.336280 GTTCTTTCCTCTTTACATGGCCT 58.664 43.478 3.32 0.00 0.00 5.19
3743 4081 3.244976 CTCTTTACATGGCCTTTTTGCG 58.755 45.455 3.32 0.00 0.00 4.85
3747 4085 5.648526 TCTTTACATGGCCTTTTTGCGTATA 59.351 36.000 3.32 0.00 0.00 1.47
3765 4103 4.320861 CGTATATGGAGCAGAGAGACAAGG 60.321 50.000 0.00 0.00 0.00 3.61
3776 4118 5.615289 CAGAGAGACAAGGAAAAAGGAAGA 58.385 41.667 0.00 0.00 0.00 2.87
3780 4122 5.604650 AGAGACAAGGAAAAAGGAAGAGAGA 59.395 40.000 0.00 0.00 0.00 3.10
3794 4136 4.332268 GGAAGAGAGATGTCATGCAAGAAC 59.668 45.833 0.00 0.00 0.00 3.01
3827 4169 1.135228 GCGTGTTTGGTTCCAGTTTGT 60.135 47.619 0.00 0.00 0.00 2.83
3865 4207 1.077429 GTCCATCTCAACCCAGCCC 60.077 63.158 0.00 0.00 0.00 5.19
4030 6886 1.094785 ACAACGTTTGTGCTCTGCTT 58.905 45.000 0.00 0.00 43.48 3.91
4065 6943 1.132834 TCAGCACAACAACACAAGCAG 59.867 47.619 0.00 0.00 0.00 4.24
4073 6967 2.368439 ACAACACAAGCAGAGCAAGAA 58.632 42.857 0.00 0.00 0.00 2.52
4218 7176 1.939381 GCATAAGTCTCGCCACACACA 60.939 52.381 0.00 0.00 0.00 3.72
4415 7387 0.171903 GGCGGCGACAGAAGTAGTTA 59.828 55.000 12.98 0.00 0.00 2.24
4416 7388 1.202382 GGCGGCGACAGAAGTAGTTAT 60.202 52.381 12.98 0.00 0.00 1.89
4417 7389 2.033801 GGCGGCGACAGAAGTAGTTATA 59.966 50.000 12.98 0.00 0.00 0.98
4418 7390 3.298317 GCGGCGACAGAAGTAGTTATAG 58.702 50.000 12.98 0.00 0.00 1.31
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
93 94 3.181439 CCTCAAACTTCTCCAGGAAACCT 60.181 47.826 0.00 0.00 33.07 3.50
96 97 3.496870 GCTCCTCAAACTTCTCCAGGAAA 60.497 47.826 0.00 0.00 32.74 3.13
111 112 3.226429 GACGTGGCAGTGCTCCTCA 62.226 63.158 16.11 0.78 0.00 3.86
152 153 6.844254 ACTCGACTACTCTGTTTGTAGATTC 58.156 40.000 7.75 0.00 39.61 2.52
184 185 9.930693 AGTATACGTCTCTTTCTCAAGAATTTT 57.069 29.630 0.00 0.00 38.63 1.82
191 192 6.095580 AGCATCAGTATACGTCTCTTTCTCAA 59.904 38.462 0.00 0.00 0.00 3.02
192 193 5.590663 AGCATCAGTATACGTCTCTTTCTCA 59.409 40.000 0.00 0.00 0.00 3.27
204 205 2.831333 ACAGCAGCAGCATCAGTATAC 58.169 47.619 3.17 0.00 45.49 1.47
207 208 3.548745 ATTACAGCAGCAGCATCAGTA 57.451 42.857 3.17 0.00 45.49 2.74
208 209 2.414994 ATTACAGCAGCAGCATCAGT 57.585 45.000 3.17 0.00 45.49 3.41
209 210 5.212934 CAATTATTACAGCAGCAGCATCAG 58.787 41.667 3.17 0.00 45.49 2.90
210 211 4.498513 GCAATTATTACAGCAGCAGCATCA 60.499 41.667 3.17 0.00 45.49 3.07
211 212 3.979495 GCAATTATTACAGCAGCAGCATC 59.021 43.478 3.17 0.00 45.49 3.91
212 213 3.549423 CGCAATTATTACAGCAGCAGCAT 60.549 43.478 3.17 0.00 45.49 3.79
404 406 4.021229 AGCATCACATTCCATGACACAAT 58.979 39.130 0.00 0.00 0.00 2.71
499 505 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
500 506 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
501 507 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
510 516 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
511 517 1.265365 CAACACACACACACACACACA 59.735 47.619 0.00 0.00 0.00 3.72
512 518 1.265635 ACAACACACACACACACACAC 59.734 47.619 0.00 0.00 0.00 3.82
513 519 1.598882 ACAACACACACACACACACA 58.401 45.000 0.00 0.00 0.00 3.72
514 520 2.697431 AACAACACACACACACACAC 57.303 45.000 0.00 0.00 0.00 3.82
554 560 4.238514 CCAAACGCCTCTGCTATATAGAC 58.761 47.826 14.16 5.69 34.43 2.59
556 562 3.990469 CACCAAACGCCTCTGCTATATAG 59.010 47.826 5.30 5.30 34.43 1.31
557 563 3.386726 ACACCAAACGCCTCTGCTATATA 59.613 43.478 0.00 0.00 34.43 0.86
558 564 2.170607 ACACCAAACGCCTCTGCTATAT 59.829 45.455 0.00 0.00 34.43 0.86
582 591 3.188873 GCATAGTAGGTAAGACGCTCGAT 59.811 47.826 0.00 0.00 0.00 3.59
604 617 3.183775 CACGGTTAACAAAACTCTCTCCG 59.816 47.826 8.10 0.00 40.94 4.63
621 634 0.603569 CAGCCTACAGAGAACACGGT 59.396 55.000 0.00 0.00 0.00 4.83
624 637 4.993029 AGATACAGCCTACAGAGAACAC 57.007 45.455 0.00 0.00 0.00 3.32
629 642 6.701145 TTACAGAAGATACAGCCTACAGAG 57.299 41.667 0.00 0.00 0.00 3.35
631 644 7.013750 TCTCATTACAGAAGATACAGCCTACAG 59.986 40.741 0.00 0.00 0.00 2.74
680 693 3.754323 CGTTTTCTTATGGGGTAAGCACA 59.246 43.478 0.00 0.00 39.73 4.57
689 702 1.396996 CGTGCTCCGTTTTCTTATGGG 59.603 52.381 0.00 0.00 0.00 4.00
701 714 2.004583 TCAACTTAATCCGTGCTCCG 57.995 50.000 0.00 0.00 0.00 4.63
704 717 5.730550 TCATAGTTCAACTTAATCCGTGCT 58.269 37.500 0.00 0.00 0.00 4.40
705 718 6.417191 TTCATAGTTCAACTTAATCCGTGC 57.583 37.500 0.00 0.00 0.00 5.34
706 719 8.450964 ACAATTCATAGTTCAACTTAATCCGTG 58.549 33.333 0.00 0.00 0.00 4.94
707 720 8.561738 ACAATTCATAGTTCAACTTAATCCGT 57.438 30.769 0.00 0.00 0.00 4.69
708 721 9.840427 AAACAATTCATAGTTCAACTTAATCCG 57.160 29.630 0.00 0.00 0.00 4.18
714 727 9.744468 GGTTACAAACAATTCATAGTTCAACTT 57.256 29.630 0.00 0.00 0.00 2.66
715 728 8.357402 GGGTTACAAACAATTCATAGTTCAACT 58.643 33.333 0.00 0.00 0.00 3.16
716 729 8.138712 TGGGTTACAAACAATTCATAGTTCAAC 58.861 33.333 0.00 0.00 0.00 3.18
717 730 8.239038 TGGGTTACAAACAATTCATAGTTCAA 57.761 30.769 0.00 0.00 0.00 2.69
718 731 7.825331 TGGGTTACAAACAATTCATAGTTCA 57.175 32.000 0.00 0.00 0.00 3.18
719 732 8.519526 TGATGGGTTACAAACAATTCATAGTTC 58.480 33.333 0.00 0.00 0.00 3.01
720 733 8.415950 TGATGGGTTACAAACAATTCATAGTT 57.584 30.769 0.00 0.00 0.00 2.24
721 734 8.415950 TTGATGGGTTACAAACAATTCATAGT 57.584 30.769 0.00 0.00 0.00 2.12
722 735 8.739039 TCTTGATGGGTTACAAACAATTCATAG 58.261 33.333 0.00 0.00 32.22 2.23
725 738 6.968263 TCTTGATGGGTTACAAACAATTCA 57.032 33.333 0.00 0.00 32.22 2.57
726 739 7.872483 ACATTCTTGATGGGTTACAAACAATTC 59.128 33.333 0.00 0.00 40.21 2.17
729 744 6.723298 ACATTCTTGATGGGTTACAAACAA 57.277 33.333 0.00 0.00 40.21 2.83
731 746 5.925969 CCAACATTCTTGATGGGTTACAAAC 59.074 40.000 0.00 0.00 41.01 2.93
748 763 7.736447 TTTTTGTGAGAAAAACACCAACATT 57.264 28.000 0.00 0.00 37.45 2.71
777 792 4.401202 ACCACTCCATGAAACGTTCTTTTT 59.599 37.500 0.00 0.00 0.00 1.94
789 818 1.065926 GCACAGATCACCACTCCATGA 60.066 52.381 0.00 0.00 0.00 3.07
1224 1290 0.526954 GAGCCAATGCCATGAAAGCG 60.527 55.000 0.00 0.00 38.69 4.68
1343 1409 1.568597 TCTGAGGAAGAGGAGGAGGAG 59.431 57.143 0.00 0.00 0.00 3.69
1425 1501 4.621460 CGATGCCAAGAACCTATACATACG 59.379 45.833 0.00 0.00 0.00 3.06
1439 1519 4.170062 CAGGTGCGCGATGCCAAG 62.170 66.667 12.10 1.20 45.60 3.61
1483 1563 1.000506 TGCTTCAGGTACTTGTCCGAC 59.999 52.381 4.75 0.00 34.60 4.79
1484 1564 1.272490 CTGCTTCAGGTACTTGTCCGA 59.728 52.381 4.75 0.00 34.60 4.55
1516 1596 0.953471 TGGGAAACTTGATGGACGCG 60.953 55.000 3.53 3.53 0.00 6.01
1611 1691 1.663135 GCTCGAAGAAGTCCATGAAGC 59.337 52.381 0.00 0.00 34.09 3.86
1652 1732 4.400961 GAAGAGCGGCAGCCACCT 62.401 66.667 13.30 6.80 46.67 4.00
1654 1734 1.811679 GTAGAAGAGCGGCAGCCAC 60.812 63.158 13.30 0.35 46.67 5.01
1744 1824 2.751259 TGGTGGTAGAGTACGTGTGATC 59.249 50.000 0.00 0.00 0.00 2.92
1751 1831 0.454600 ATGCGTGGTGGTAGAGTACG 59.545 55.000 0.00 0.00 37.77 3.67
1797 1880 7.406553 CGTCAGTGAAGAACAAAAATCTTGTA 58.593 34.615 0.00 0.00 37.26 2.41
1809 1892 0.778815 CGACAGCGTCAGTGAAGAAC 59.221 55.000 10.48 0.00 32.09 3.01
1831 1915 5.389098 CCAAAAAGAAAAATGCAGCATCGAG 60.389 40.000 8.77 0.00 0.00 4.04
1849 1933 3.111939 CCGGCGACACACCAAAAA 58.888 55.556 9.30 0.00 0.00 1.94
1916 2000 0.809385 TGACGATCTTCCTCACGGTC 59.191 55.000 0.00 0.00 0.00 4.79
1984 2068 1.070786 GCCCAGAACTCCAACGTCA 59.929 57.895 0.00 0.00 0.00 4.35
2203 2287 8.827832 ACCTTGTACATAGTACTGTATTGGTA 57.172 34.615 5.39 0.00 34.33 3.25
2204 2288 7.729124 ACCTTGTACATAGTACTGTATTGGT 57.271 36.000 5.39 7.96 34.33 3.67
2274 2370 6.994496 CCTGAAAAGAGAGCATCCACATATAA 59.006 38.462 0.00 0.00 33.66 0.98
2281 2377 3.795688 AACCTGAAAAGAGAGCATCCA 57.204 42.857 0.00 0.00 33.66 3.41
2282 2378 3.942115 GGTAACCTGAAAAGAGAGCATCC 59.058 47.826 0.00 0.00 33.66 3.51
2283 2379 3.619038 CGGTAACCTGAAAAGAGAGCATC 59.381 47.826 0.00 0.00 0.00 3.91
2289 2385 2.076863 CAGCCGGTAACCTGAAAAGAG 58.923 52.381 1.90 0.00 0.00 2.85
2291 2387 1.165270 CCAGCCGGTAACCTGAAAAG 58.835 55.000 1.90 0.00 0.00 2.27
2306 2402 6.322491 GGTGTAACAATTTCTTGATACCAGC 58.678 40.000 0.00 0.00 38.93 4.85
2377 2473 2.361771 GACCCGGAGAGGTACCCA 59.638 66.667 8.74 0.00 41.42 4.51
2407 2503 3.617263 AGTTTAGATTGAAACCTAGCGCG 59.383 43.478 0.00 0.00 39.66 6.86
2419 2515 8.752766 ATTTGATTGCAGTGAAGTTTAGATTG 57.247 30.769 0.00 0.00 0.00 2.67
2422 2518 8.077991 CAGAATTTGATTGCAGTGAAGTTTAGA 58.922 33.333 0.00 0.00 0.00 2.10
2484 2580 2.093973 AGCAGACTATATATGGCCGCAC 60.094 50.000 0.00 0.00 0.00 5.34
2499 2595 2.732412 TGTGTTAGAGCAGAGCAGAC 57.268 50.000 0.00 0.00 0.00 3.51
2561 2661 0.460987 CGTCACCAGCTCCAGGATTC 60.461 60.000 0.00 0.00 0.00 2.52
2591 2691 6.962182 TGATAAGATGACAGACCCAAGAAAT 58.038 36.000 0.00 0.00 0.00 2.17
2664 2764 6.183360 GCAAAGATAACAATGCCAGCTAGTTA 60.183 38.462 0.00 0.00 32.73 2.24
2666 2766 4.096984 GCAAAGATAACAATGCCAGCTAGT 59.903 41.667 0.00 0.00 32.73 2.57
2673 2773 4.559153 AGTGTTGCAAAGATAACAATGCC 58.441 39.130 0.00 0.00 38.40 4.40
2674 2774 6.421801 AGAAAGTGTTGCAAAGATAACAATGC 59.578 34.615 0.00 0.00 38.40 3.56
2675 2775 7.935338 AGAAAGTGTTGCAAAGATAACAATG 57.065 32.000 0.00 0.00 38.40 2.82
2676 2776 8.947055 AAAGAAAGTGTTGCAAAGATAACAAT 57.053 26.923 0.00 0.00 38.40 2.71
2678 2778 8.770438 AAAAAGAAAGTGTTGCAAAGATAACA 57.230 26.923 0.00 0.00 34.66 2.41
2736 3026 7.757173 CACGATTTATCAGGATTCGATACAGAT 59.243 37.037 8.38 0.00 34.15 2.90
2766 3057 5.179368 CCTCTTTACAAGCTGAATTCGACAA 59.821 40.000 0.04 0.00 0.00 3.18
2784 3078 3.825160 TTCTGCCGCGTGCCTCTTT 62.825 57.895 15.40 0.00 40.16 2.52
2820 3114 2.289820 CAGGGAGAATGTCGATGCAATG 59.710 50.000 0.00 0.00 0.00 2.82
2826 3120 2.959707 GGAGTACAGGGAGAATGTCGAT 59.040 50.000 0.00 0.00 32.02 3.59
2886 3180 5.010012 CCTTGGCAATATGGAGATGGTTAAC 59.990 44.000 0.00 0.00 0.00 2.01
2889 3183 3.052642 ACCTTGGCAATATGGAGATGGTT 60.053 43.478 10.64 0.00 0.00 3.67
2898 3192 4.819630 ACGGTTATACACCTTGGCAATATG 59.180 41.667 0.00 4.80 44.69 1.78
2952 3246 8.811994 CAAGGGGATTTCTTTTAATTACCTTCA 58.188 33.333 0.00 0.00 34.47 3.02
2966 3260 4.017683 AGAAGAGAATGCAAGGGGATTTCT 60.018 41.667 0.00 0.00 34.96 2.52
3182 3480 6.884280 AAGTTTCATCAAGTTTACCTGGAG 57.116 37.500 0.00 0.00 0.00 3.86
3220 3518 1.070309 GCACGCTTTCAGAGTGAACAG 60.070 52.381 11.32 0.00 46.88 3.16
3221 3519 0.937304 GCACGCTTTCAGAGTGAACA 59.063 50.000 11.32 0.00 46.88 3.18
3255 3554 2.513753 CATGAGCACTGTACCCCAAAA 58.486 47.619 0.00 0.00 0.00 2.44
3256 3555 1.271871 CCATGAGCACTGTACCCCAAA 60.272 52.381 0.00 0.00 0.00 3.28
3257 3556 0.327924 CCATGAGCACTGTACCCCAA 59.672 55.000 0.00 0.00 0.00 4.12
3258 3557 1.561769 CCCATGAGCACTGTACCCCA 61.562 60.000 0.00 0.00 0.00 4.96
3259 3558 1.224592 CCCATGAGCACTGTACCCC 59.775 63.158 0.00 0.00 0.00 4.95
3260 3559 0.328258 AACCCATGAGCACTGTACCC 59.672 55.000 0.00 0.00 0.00 3.69
3264 3563 1.075482 CCCAACCCATGAGCACTGT 59.925 57.895 0.00 0.00 0.00 3.55
3358 3657 2.068821 GGAGCAGATCAGGGAGCCA 61.069 63.158 0.00 0.00 0.00 4.75
3364 3663 1.462731 CCGGAGAGGAGCAGATCAGG 61.463 65.000 0.00 0.00 45.00 3.86
3426 3725 6.040054 TGTCGTTGCTGTATACCAGTGTATAT 59.960 38.462 0.00 0.00 43.55 0.86
3427 3726 5.357596 TGTCGTTGCTGTATACCAGTGTATA 59.642 40.000 0.00 0.00 43.55 1.47
3448 3747 1.805869 ACTCATCACAAGCTGCTGTC 58.194 50.000 1.35 0.00 0.00 3.51
3483 3782 8.325787 TCTCCAAGCACTTACCATTCTTTTATA 58.674 33.333 0.00 0.00 0.00 0.98
3513 3812 1.964223 TGGCGGGAAATTTTGCACTTA 59.036 42.857 11.49 0.00 0.00 2.24
3542 3841 6.324819 CAACCATCCATCTTTACATGTTGAC 58.675 40.000 2.30 0.00 0.00 3.18
3610 3909 8.169977 AGAAAAGCAATCACTGAACATTTAGA 57.830 30.769 0.00 0.00 0.00 2.10
3612 3911 7.014134 TGGAGAAAAGCAATCACTGAACATTTA 59.986 33.333 0.00 0.00 0.00 1.40
3654 3953 5.191722 ACCAATCAGGCTATCTTGTTCCTTA 59.808 40.000 0.00 0.00 43.14 2.69
3687 3990 0.906066 TAGCCAACCAGCCAATCGTA 59.094 50.000 0.00 0.00 0.00 3.43
3690 3993 1.544724 TTGTAGCCAACCAGCCAATC 58.455 50.000 0.00 0.00 0.00 2.67
3696 4033 3.573967 AGAACCAATTTGTAGCCAACCAG 59.426 43.478 0.00 0.00 0.00 4.00
3697 4034 3.571590 AGAACCAATTTGTAGCCAACCA 58.428 40.909 0.00 0.00 0.00 3.67
3698 4035 4.600692 AAGAACCAATTTGTAGCCAACC 57.399 40.909 0.00 0.00 0.00 3.77
3699 4036 4.988540 GGAAAGAACCAATTTGTAGCCAAC 59.011 41.667 0.00 0.00 0.00 3.77
3700 4037 4.898861 AGGAAAGAACCAATTTGTAGCCAA 59.101 37.500 0.00 0.00 0.00 4.52
3701 4038 4.479158 AGGAAAGAACCAATTTGTAGCCA 58.521 39.130 0.00 0.00 0.00 4.75
3702 4039 4.767409 AGAGGAAAGAACCAATTTGTAGCC 59.233 41.667 0.00 0.00 0.00 3.93
3703 4040 5.966742 AGAGGAAAGAACCAATTTGTAGC 57.033 39.130 0.00 0.00 0.00 3.58
3704 4041 8.846211 TGTAAAGAGGAAAGAACCAATTTGTAG 58.154 33.333 0.00 0.00 0.00 2.74
3705 4042 8.754991 TGTAAAGAGGAAAGAACCAATTTGTA 57.245 30.769 0.00 0.00 0.00 2.41
3706 4043 7.654022 TGTAAAGAGGAAAGAACCAATTTGT 57.346 32.000 0.00 0.00 0.00 2.83
3707 4044 7.599998 CCATGTAAAGAGGAAAGAACCAATTTG 59.400 37.037 0.00 0.00 0.00 2.32
3708 4045 7.670364 CCATGTAAAGAGGAAAGAACCAATTT 58.330 34.615 0.00 0.00 0.00 1.82
3709 4046 6.295292 GCCATGTAAAGAGGAAAGAACCAATT 60.295 38.462 0.00 0.00 0.00 2.32
3710 4047 5.185828 GCCATGTAAAGAGGAAAGAACCAAT 59.814 40.000 0.00 0.00 0.00 3.16
3711 4048 4.522789 GCCATGTAAAGAGGAAAGAACCAA 59.477 41.667 0.00 0.00 0.00 3.67
3712 4049 4.079253 GCCATGTAAAGAGGAAAGAACCA 58.921 43.478 0.00 0.00 0.00 3.67
3713 4050 3.444034 GGCCATGTAAAGAGGAAAGAACC 59.556 47.826 0.00 0.00 0.00 3.62
3714 4051 4.336280 AGGCCATGTAAAGAGGAAAGAAC 58.664 43.478 5.01 0.00 0.00 3.01
3720 4057 3.258123 GCAAAAAGGCCATGTAAAGAGGA 59.742 43.478 5.01 0.00 0.00 3.71
3736 4073 4.765273 TCTCTGCTCCATATACGCAAAAA 58.235 39.130 0.00 0.00 32.66 1.94
3743 4081 4.830046 TCCTTGTCTCTCTGCTCCATATAC 59.170 45.833 0.00 0.00 0.00 1.47
3747 4085 2.244486 TCCTTGTCTCTCTGCTCCAT 57.756 50.000 0.00 0.00 0.00 3.41
3765 4103 5.413833 TGCATGACATCTCTCTTCCTTTTTC 59.586 40.000 0.00 0.00 0.00 2.29
3776 4118 3.607741 CTGGTTCTTGCATGACATCTCT 58.392 45.455 1.02 0.00 0.00 3.10
3780 4122 1.180029 GGCTGGTTCTTGCATGACAT 58.820 50.000 1.02 0.00 0.00 3.06
3865 4207 0.883833 AGGCTGCATTTCAAGAACCG 59.116 50.000 0.50 0.00 0.00 4.44
3947 6802 3.119708 GCACAAAAATGGCAACCAAACAA 60.120 39.130 0.00 0.00 36.95 2.83
4023 6879 2.171237 TCATGTGATGGGGTAAGCAGAG 59.829 50.000 0.00 0.00 0.00 3.35
4030 6886 2.126057 TGCTGATCATGTGATGGGGTA 58.874 47.619 0.00 0.00 34.37 3.69
4065 6943 3.000623 GCTTGCTTTGTTTGTTCTTGCTC 59.999 43.478 0.00 0.00 0.00 4.26
4073 6967 2.383368 TGCTTGCTTGCTTTGTTTGT 57.617 40.000 3.47 0.00 0.00 2.83
4289 7261 4.234019 TGCAGGTTTCGTTGCAGT 57.766 50.000 0.00 0.00 44.72 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.