Multiple sequence alignment - TraesCS1B01G209500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G209500 chr1B 100.000 6071 0 0 1 6071 380440997 380434927 0.000000e+00 11212.0
1 TraesCS1B01G209500 chr1B 90.517 348 33 0 3404 3751 380437423 380437076 1.540000e-125 460.0
2 TraesCS1B01G209500 chr1B 90.517 348 33 0 3575 3922 380437594 380437247 1.540000e-125 460.0
3 TraesCS1B01G209500 chr1B 89.266 177 19 0 3404 3580 380437252 380437076 7.920000e-54 222.0
4 TraesCS1B01G209500 chr1B 89.266 177 19 0 3746 3922 380437594 380437418 7.920000e-54 222.0
5 TraesCS1B01G209500 chr1D 95.919 4803 136 28 516 5308 279940861 279936109 0.000000e+00 7729.0
6 TraesCS1B01G209500 chr1D 94.118 765 19 5 5308 6070 279936076 279935336 0.000000e+00 1140.0
7 TraesCS1B01G209500 chr1D 91.379 348 30 0 3404 3751 279937840 279937493 1.530000e-130 477.0
8 TraesCS1B01G209500 chr1D 91.092 348 31 0 3575 3922 279938011 279937664 7.120000e-129 472.0
9 TraesCS1B01G209500 chr1D 90.395 177 17 0 3404 3580 279937669 279937493 3.660000e-57 233.0
10 TraesCS1B01G209500 chr1D 89.831 177 18 0 3746 3922 279938011 279937835 1.700000e-55 228.0
11 TraesCS1B01G209500 chr1D 91.270 126 8 3 311 436 279940998 279940876 1.050000e-37 169.0
12 TraesCS1B01G209500 chr1A 94.998 4638 196 18 687 5312 351864035 351859422 0.000000e+00 7247.0
13 TraesCS1B01G209500 chr1A 96.471 765 19 5 5308 6070 351859393 351858635 0.000000e+00 1256.0
14 TraesCS1B01G209500 chr1A 92.816 348 25 0 3404 3751 351861160 351860813 7.020000e-139 505.0
15 TraesCS1B01G209500 chr1A 91.954 348 28 0 3575 3922 351861331 351860984 7.070000e-134 488.0
16 TraesCS1B01G209500 chr1A 91.139 316 20 6 309 623 351864346 351864038 7.280000e-114 422.0
17 TraesCS1B01G209500 chr1A 92.090 177 14 0 3404 3580 351860989 351860813 3.630000e-62 250.0
18 TraesCS1B01G209500 chr1A 89.831 177 18 0 3746 3922 351861331 351861155 1.700000e-55 228.0
19 TraesCS1B01G209500 chr5A 84.840 343 24 15 1327 1669 465120584 465120270 2.730000e-83 320.0
20 TraesCS1B01G209500 chr5A 88.785 107 5 1 1014 1113 465120824 465120718 2.300000e-24 124.0
21 TraesCS1B01G209500 chr3B 79.032 186 23 11 95 269 482462768 482462948 4.970000e-21 113.0
22 TraesCS1B01G209500 chr5B 87.273 55 5 2 37 91 671267899 671267847 1.830000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G209500 chr1B 380434927 380440997 6070 True 2515.200000 11212 91.913200 1 6071 5 chr1B.!!$R1 6070
1 TraesCS1B01G209500 chr1D 279935336 279940998 5662 True 1492.571429 7729 92.000571 311 6070 7 chr1D.!!$R1 5759
2 TraesCS1B01G209500 chr1A 351858635 351864346 5711 True 1485.142857 7247 92.757000 309 6070 7 chr1A.!!$R1 5761
3 TraesCS1B01G209500 chr5A 465120270 465120824 554 True 222.000000 320 86.812500 1014 1669 2 chr5A.!!$R1 655

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
881 903 0.109086 CTGTCGTCTTCACCATCGCT 60.109 55.0 0.00 0.0 0.00 4.93 F
925 950 0.250209 CCCATCCTCTCCTTCATGCG 60.250 60.0 0.00 0.0 0.00 4.73 F
2706 2743 0.521450 CAGACGTCTCGACATCGTGG 60.521 60.0 16.96 0.0 40.80 4.94 F
3414 3451 0.108396 CCGTACCATGATGGATGCCA 59.892 55.0 20.11 0.0 40.96 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1991 2025 0.103937 CGATCTCCAGTGCCTCTTCC 59.896 60.0 0.0 0.0 0.00 3.46 R
2789 2826 0.725686 CTGCCTTCTCATTGCTGACG 59.274 55.0 0.0 0.0 0.00 4.35 R
3798 3835 0.251354 GACAGCAGATCCTTGAGGCA 59.749 55.0 0.0 0.0 34.44 4.75 R
5314 5357 0.538977 GACATGCCATCCCATCCTGG 60.539 60.0 0.0 0.0 37.25 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.773033 AGGAACATCTGAATAAAATTATGCCT 57.227 30.769 0.00 0.00 0.00 4.75
26 27 9.205513 AGGAACATCTGAATAAAATTATGCCTT 57.794 29.630 0.00 0.00 0.00 4.35
27 28 9.822185 GGAACATCTGAATAAAATTATGCCTTT 57.178 29.630 0.00 0.00 0.00 3.11
29 30 9.822185 AACATCTGAATAAAATTATGCCTTTCC 57.178 29.630 0.00 0.00 0.00 3.13
30 31 9.205513 ACATCTGAATAAAATTATGCCTTTCCT 57.794 29.630 0.00 0.00 0.00 3.36
31 32 9.688592 CATCTGAATAAAATTATGCCTTTCCTC 57.311 33.333 0.00 0.00 0.00 3.71
32 33 8.821686 TCTGAATAAAATTATGCCTTTCCTCA 57.178 30.769 0.00 0.00 0.00 3.86
33 34 9.425248 TCTGAATAAAATTATGCCTTTCCTCAT 57.575 29.630 0.00 0.00 0.00 2.90
38 39 9.965824 ATAAAATTATGCCTTTCCTCATAAACG 57.034 29.630 0.00 0.00 38.28 3.60
39 40 7.639113 AAATTATGCCTTTCCTCATAAACGA 57.361 32.000 0.00 0.00 38.28 3.85
40 41 7.823745 AATTATGCCTTTCCTCATAAACGAT 57.176 32.000 0.00 0.00 38.28 3.73
41 42 6.618287 TTATGCCTTTCCTCATAAACGATG 57.382 37.500 0.00 0.00 33.65 3.84
42 43 3.950397 TGCCTTTCCTCATAAACGATGT 58.050 40.909 0.00 0.00 36.84 3.06
43 44 5.092554 TGCCTTTCCTCATAAACGATGTA 57.907 39.130 0.00 0.00 36.84 2.29
44 45 5.492895 TGCCTTTCCTCATAAACGATGTAA 58.507 37.500 0.00 0.00 36.84 2.41
45 46 5.353123 TGCCTTTCCTCATAAACGATGTAAC 59.647 40.000 0.00 0.00 36.84 2.50
46 47 5.585047 GCCTTTCCTCATAAACGATGTAACT 59.415 40.000 0.00 0.00 36.84 2.24
47 48 6.456988 GCCTTTCCTCATAAACGATGTAACTG 60.457 42.308 0.00 0.00 36.84 3.16
48 49 6.417191 TTTCCTCATAAACGATGTAACTGC 57.583 37.500 0.00 0.00 36.84 4.40
49 50 5.339008 TCCTCATAAACGATGTAACTGCT 57.661 39.130 0.00 0.00 36.84 4.24
50 51 6.459670 TCCTCATAAACGATGTAACTGCTA 57.540 37.500 0.00 0.00 36.84 3.49
51 52 7.050970 TCCTCATAAACGATGTAACTGCTAT 57.949 36.000 0.00 0.00 36.84 2.97
52 53 7.497595 TCCTCATAAACGATGTAACTGCTATT 58.502 34.615 0.00 0.00 36.84 1.73
53 54 7.985184 TCCTCATAAACGATGTAACTGCTATTT 59.015 33.333 0.00 0.00 36.84 1.40
54 55 8.276325 CCTCATAAACGATGTAACTGCTATTTC 58.724 37.037 0.00 0.00 36.84 2.17
55 56 8.942338 TCATAAACGATGTAACTGCTATTTCT 57.058 30.769 0.00 0.00 36.84 2.52
119 120 2.888212 GAGGATCTCTCCCACATAGCT 58.112 52.381 0.00 0.00 43.21 3.32
120 121 4.040936 GAGGATCTCTCCCACATAGCTA 57.959 50.000 0.00 0.00 43.21 3.32
121 122 3.761752 GAGGATCTCTCCCACATAGCTAC 59.238 52.174 0.00 0.00 43.21 3.58
122 123 2.490115 GGATCTCTCCCACATAGCTACG 59.510 54.545 0.00 0.00 35.28 3.51
123 124 1.319541 TCTCTCCCACATAGCTACGC 58.680 55.000 0.00 0.00 0.00 4.42
124 125 1.133761 TCTCTCCCACATAGCTACGCT 60.134 52.381 0.00 0.00 43.41 5.07
125 126 1.268352 CTCTCCCACATAGCTACGCTC 59.732 57.143 0.00 0.00 40.44 5.03
126 127 1.133761 TCTCCCACATAGCTACGCTCT 60.134 52.381 0.00 0.00 40.44 4.09
127 128 2.105993 TCTCCCACATAGCTACGCTCTA 59.894 50.000 0.00 0.00 40.44 2.43
128 129 2.885266 CTCCCACATAGCTACGCTCTAA 59.115 50.000 0.00 0.00 40.44 2.10
129 130 3.497332 TCCCACATAGCTACGCTCTAAT 58.503 45.455 0.00 0.00 40.44 1.73
130 131 3.506455 TCCCACATAGCTACGCTCTAATC 59.494 47.826 0.00 0.00 40.44 1.75
131 132 3.367498 CCCACATAGCTACGCTCTAATCC 60.367 52.174 0.00 0.00 40.44 3.01
132 133 3.367498 CCACATAGCTACGCTCTAATCCC 60.367 52.174 0.00 0.00 40.44 3.85
133 134 2.488545 ACATAGCTACGCTCTAATCCCG 59.511 50.000 0.00 0.00 40.44 5.14
134 135 2.556144 TAGCTACGCTCTAATCCCGA 57.444 50.000 0.00 0.00 40.44 5.14
135 136 1.912417 AGCTACGCTCTAATCCCGAT 58.088 50.000 0.00 0.00 30.62 4.18
136 137 1.813786 AGCTACGCTCTAATCCCGATC 59.186 52.381 0.00 0.00 30.62 3.69
137 138 1.813786 GCTACGCTCTAATCCCGATCT 59.186 52.381 0.00 0.00 0.00 2.75
138 139 3.008330 GCTACGCTCTAATCCCGATCTA 58.992 50.000 0.00 0.00 0.00 1.98
139 140 3.439476 GCTACGCTCTAATCCCGATCTAA 59.561 47.826 0.00 0.00 0.00 2.10
140 141 4.096682 GCTACGCTCTAATCCCGATCTAAT 59.903 45.833 0.00 0.00 0.00 1.73
141 142 5.393243 GCTACGCTCTAATCCCGATCTAATT 60.393 44.000 0.00 0.00 0.00 1.40
142 143 4.810790 ACGCTCTAATCCCGATCTAATTG 58.189 43.478 0.00 0.00 0.00 2.32
143 144 4.177026 CGCTCTAATCCCGATCTAATTGG 58.823 47.826 0.00 0.00 0.00 3.16
144 145 3.935828 GCTCTAATCCCGATCTAATTGGC 59.064 47.826 0.00 0.00 32.03 4.52
145 146 4.508662 CTCTAATCCCGATCTAATTGGCC 58.491 47.826 0.00 0.00 32.03 5.36
146 147 4.168101 TCTAATCCCGATCTAATTGGCCT 58.832 43.478 3.32 0.00 32.03 5.19
147 148 5.338632 TCTAATCCCGATCTAATTGGCCTA 58.661 41.667 3.32 0.00 32.03 3.93
148 149 3.983044 ATCCCGATCTAATTGGCCTAC 57.017 47.619 3.32 0.00 32.03 3.18
149 150 2.684943 TCCCGATCTAATTGGCCTACA 58.315 47.619 3.32 0.00 32.03 2.74
150 151 2.632996 TCCCGATCTAATTGGCCTACAG 59.367 50.000 3.32 0.00 32.03 2.74
151 152 2.632996 CCCGATCTAATTGGCCTACAGA 59.367 50.000 3.32 3.35 32.03 3.41
152 153 3.261897 CCCGATCTAATTGGCCTACAGAT 59.738 47.826 3.32 8.56 32.03 2.90
153 154 4.263068 CCCGATCTAATTGGCCTACAGATT 60.263 45.833 3.32 0.00 32.03 2.40
154 155 5.046591 CCCGATCTAATTGGCCTACAGATTA 60.047 44.000 3.32 0.57 32.03 1.75
155 156 6.102663 CCGATCTAATTGGCCTACAGATTAG 58.897 44.000 3.32 10.03 34.74 1.73
156 157 6.071334 CCGATCTAATTGGCCTACAGATTAGA 60.071 42.308 18.91 18.91 39.96 2.10
157 158 6.809196 CGATCTAATTGGCCTACAGATTAGAC 59.191 42.308 18.96 14.47 39.33 2.59
158 159 7.309499 CGATCTAATTGGCCTACAGATTAGACT 60.309 40.741 18.96 12.72 39.33 3.24
159 160 7.291411 TCTAATTGGCCTACAGATTAGACTC 57.709 40.000 3.32 0.00 36.02 3.36
160 161 4.965200 ATTGGCCTACAGATTAGACTCC 57.035 45.455 3.32 0.00 0.00 3.85
161 162 3.689872 TGGCCTACAGATTAGACTCCT 57.310 47.619 3.32 0.00 0.00 3.69
162 163 4.808767 TGGCCTACAGATTAGACTCCTA 57.191 45.455 3.32 0.00 0.00 2.94
163 164 5.138758 TGGCCTACAGATTAGACTCCTAA 57.861 43.478 3.32 0.00 39.04 2.69
164 165 5.716979 TGGCCTACAGATTAGACTCCTAAT 58.283 41.667 3.32 0.00 45.57 1.73
165 166 6.143915 TGGCCTACAGATTAGACTCCTAATT 58.856 40.000 3.32 0.00 43.59 1.40
166 167 7.302948 TGGCCTACAGATTAGACTCCTAATTA 58.697 38.462 3.32 0.00 43.59 1.40
167 168 7.451877 TGGCCTACAGATTAGACTCCTAATTAG 59.548 40.741 3.32 5.43 43.59 1.73
168 169 7.670559 GGCCTACAGATTAGACTCCTAATTAGA 59.329 40.741 14.28 0.00 43.59 2.10
169 170 8.517056 GCCTACAGATTAGACTCCTAATTAGAC 58.483 40.741 14.28 3.03 43.59 2.59
170 171 9.575868 CCTACAGATTAGACTCCTAATTAGACA 57.424 37.037 14.28 0.00 43.59 3.41
172 173 8.472007 ACAGATTAGACTCCTAATTAGACAGG 57.528 38.462 14.28 0.00 43.59 4.00
173 174 8.282982 ACAGATTAGACTCCTAATTAGACAGGA 58.717 37.037 14.28 4.30 43.59 3.86
174 175 9.137459 CAGATTAGACTCCTAATTAGACAGGAA 57.863 37.037 14.28 6.22 43.59 3.36
175 176 9.138596 AGATTAGACTCCTAATTAGACAGGAAC 57.861 37.037 14.28 3.05 43.59 3.62
176 177 7.657023 TTAGACTCCTAATTAGACAGGAACC 57.343 40.000 14.28 0.52 40.43 3.62
177 178 4.645588 AGACTCCTAATTAGACAGGAACCG 59.354 45.833 14.28 0.00 40.43 4.44
178 179 3.132467 ACTCCTAATTAGACAGGAACCGC 59.868 47.826 14.28 0.00 40.43 5.68
179 180 2.433239 TCCTAATTAGACAGGAACCGCC 59.567 50.000 14.28 0.00 38.02 6.13
180 181 2.169769 CCTAATTAGACAGGAACCGCCA 59.830 50.000 14.28 0.00 40.02 5.69
181 182 2.403252 AATTAGACAGGAACCGCCAG 57.597 50.000 0.00 0.00 40.02 4.85
182 183 0.541863 ATTAGACAGGAACCGCCAGG 59.458 55.000 0.00 0.00 45.13 4.45
183 184 2.180159 TTAGACAGGAACCGCCAGGC 62.180 60.000 0.00 0.00 42.76 4.85
184 185 4.021925 GACAGGAACCGCCAGGCT 62.022 66.667 10.54 0.00 42.76 4.58
185 186 3.553095 GACAGGAACCGCCAGGCTT 62.553 63.158 10.54 0.00 42.76 4.35
186 187 2.282462 CAGGAACCGCCAGGCTTT 60.282 61.111 10.54 1.86 42.76 3.51
187 188 1.903404 CAGGAACCGCCAGGCTTTT 60.903 57.895 10.54 1.44 42.76 2.27
188 189 1.152546 AGGAACCGCCAGGCTTTTT 60.153 52.632 10.54 0.00 42.76 1.94
189 190 1.179174 AGGAACCGCCAGGCTTTTTC 61.179 55.000 10.54 8.78 42.76 2.29
190 191 1.179174 GGAACCGCCAGGCTTTTTCT 61.179 55.000 10.54 0.00 42.76 2.52
191 192 1.530323 GAACCGCCAGGCTTTTTCTA 58.470 50.000 10.54 0.00 42.76 2.10
192 193 2.092323 GAACCGCCAGGCTTTTTCTAT 58.908 47.619 10.54 0.00 42.76 1.98
193 194 1.751437 ACCGCCAGGCTTTTTCTATC 58.249 50.000 10.54 0.00 42.76 2.08
194 195 1.282157 ACCGCCAGGCTTTTTCTATCT 59.718 47.619 10.54 0.00 42.76 1.98
195 196 1.943340 CCGCCAGGCTTTTTCTATCTC 59.057 52.381 10.54 0.00 0.00 2.75
196 197 2.632377 CGCCAGGCTTTTTCTATCTCA 58.368 47.619 10.54 0.00 0.00 3.27
197 198 3.009723 CGCCAGGCTTTTTCTATCTCAA 58.990 45.455 10.54 0.00 0.00 3.02
198 199 3.440173 CGCCAGGCTTTTTCTATCTCAAA 59.560 43.478 10.54 0.00 0.00 2.69
199 200 4.437930 CGCCAGGCTTTTTCTATCTCAAAG 60.438 45.833 10.54 0.00 0.00 2.77
200 201 4.460731 GCCAGGCTTTTTCTATCTCAAAGT 59.539 41.667 3.29 0.00 31.29 2.66
201 202 5.047731 GCCAGGCTTTTTCTATCTCAAAGTT 60.048 40.000 3.29 0.00 31.29 2.66
202 203 6.517362 GCCAGGCTTTTTCTATCTCAAAGTTT 60.517 38.462 3.29 0.00 31.29 2.66
203 204 7.436933 CCAGGCTTTTTCTATCTCAAAGTTTT 58.563 34.615 0.00 0.00 31.29 2.43
204 205 7.928167 CCAGGCTTTTTCTATCTCAAAGTTTTT 59.072 33.333 0.00 0.00 31.29 1.94
222 223 4.552166 TTTTTCGGAGCTCTTCTTTGTG 57.448 40.909 14.64 0.00 0.00 3.33
223 224 2.910688 TTCGGAGCTCTTCTTTGTGT 57.089 45.000 14.64 0.00 0.00 3.72
224 225 4.330944 TTTCGGAGCTCTTCTTTGTGTA 57.669 40.909 14.64 0.00 0.00 2.90
225 226 3.299340 TCGGAGCTCTTCTTTGTGTAC 57.701 47.619 14.64 0.00 0.00 2.90
226 227 1.986378 CGGAGCTCTTCTTTGTGTACG 59.014 52.381 14.64 0.00 0.00 3.67
227 228 2.607282 CGGAGCTCTTCTTTGTGTACGT 60.607 50.000 14.64 0.00 0.00 3.57
228 229 2.987821 GGAGCTCTTCTTTGTGTACGTC 59.012 50.000 14.64 0.00 0.00 4.34
229 230 2.657372 GAGCTCTTCTTTGTGTACGTCG 59.343 50.000 6.43 0.00 0.00 5.12
230 231 2.292569 AGCTCTTCTTTGTGTACGTCGA 59.707 45.455 0.00 0.00 0.00 4.20
231 232 2.657372 GCTCTTCTTTGTGTACGTCGAG 59.343 50.000 0.00 0.00 0.00 4.04
232 233 3.852572 GCTCTTCTTTGTGTACGTCGAGT 60.853 47.826 0.00 0.00 0.00 4.18
233 234 3.624900 TCTTCTTTGTGTACGTCGAGTG 58.375 45.455 0.00 0.00 0.00 3.51
234 235 3.065786 TCTTCTTTGTGTACGTCGAGTGT 59.934 43.478 0.00 0.00 0.00 3.55
235 236 3.425577 TCTTTGTGTACGTCGAGTGTT 57.574 42.857 0.00 0.00 0.00 3.32
236 237 3.110358 TCTTTGTGTACGTCGAGTGTTG 58.890 45.455 0.00 0.00 0.00 3.33
237 238 2.565210 TTGTGTACGTCGAGTGTTGT 57.435 45.000 0.00 0.00 0.00 3.32
238 239 2.109609 TGTGTACGTCGAGTGTTGTC 57.890 50.000 0.00 0.00 0.00 3.18
239 240 1.401199 TGTGTACGTCGAGTGTTGTCA 59.599 47.619 0.00 0.00 0.00 3.58
240 241 2.041966 GTGTACGTCGAGTGTTGTCAG 58.958 52.381 0.00 0.00 0.00 3.51
241 242 1.941975 TGTACGTCGAGTGTTGTCAGA 59.058 47.619 0.00 0.00 0.00 3.27
242 243 2.551032 TGTACGTCGAGTGTTGTCAGAT 59.449 45.455 0.00 0.00 0.00 2.90
243 244 2.795175 ACGTCGAGTGTTGTCAGATT 57.205 45.000 0.00 0.00 0.00 2.40
244 245 3.909776 ACGTCGAGTGTTGTCAGATTA 57.090 42.857 0.00 0.00 0.00 1.75
245 246 3.562505 ACGTCGAGTGTTGTCAGATTAC 58.437 45.455 0.00 0.00 0.00 1.89
246 247 3.252701 ACGTCGAGTGTTGTCAGATTACT 59.747 43.478 0.00 0.00 0.00 2.24
247 248 4.453478 ACGTCGAGTGTTGTCAGATTACTA 59.547 41.667 0.00 0.00 0.00 1.82
248 249 4.787083 CGTCGAGTGTTGTCAGATTACTAC 59.213 45.833 0.00 0.00 0.00 2.73
249 250 5.390673 CGTCGAGTGTTGTCAGATTACTACT 60.391 44.000 0.00 0.00 0.00 2.57
250 251 6.380190 GTCGAGTGTTGTCAGATTACTACTT 58.620 40.000 0.00 0.00 0.00 2.24
251 252 6.523893 GTCGAGTGTTGTCAGATTACTACTTC 59.476 42.308 0.00 0.00 0.00 3.01
252 253 6.206048 TCGAGTGTTGTCAGATTACTACTTCA 59.794 38.462 0.00 0.00 0.00 3.02
253 254 6.524933 CGAGTGTTGTCAGATTACTACTTCAG 59.475 42.308 0.00 0.00 0.00 3.02
254 255 7.526142 AGTGTTGTCAGATTACTACTTCAGA 57.474 36.000 0.00 0.00 0.00 3.27
255 256 7.952671 AGTGTTGTCAGATTACTACTTCAGAA 58.047 34.615 0.00 0.00 0.00 3.02
256 257 7.868415 AGTGTTGTCAGATTACTACTTCAGAAC 59.132 37.037 0.00 0.00 0.00 3.01
257 258 7.652105 GTGTTGTCAGATTACTACTTCAGAACA 59.348 37.037 0.00 0.00 0.00 3.18
258 259 7.652105 TGTTGTCAGATTACTACTTCAGAACAC 59.348 37.037 0.00 0.00 0.00 3.32
259 260 7.284919 TGTCAGATTACTACTTCAGAACACA 57.715 36.000 0.00 0.00 0.00 3.72
260 261 7.896811 TGTCAGATTACTACTTCAGAACACAT 58.103 34.615 0.00 0.00 0.00 3.21
261 262 7.814587 TGTCAGATTACTACTTCAGAACACATG 59.185 37.037 0.00 0.00 0.00 3.21
262 263 7.276658 GTCAGATTACTACTTCAGAACACATGG 59.723 40.741 0.00 0.00 0.00 3.66
263 264 7.178451 TCAGATTACTACTTCAGAACACATGGA 59.822 37.037 0.00 0.00 0.00 3.41
264 265 7.984050 CAGATTACTACTTCAGAACACATGGAT 59.016 37.037 0.00 0.00 0.00 3.41
265 266 9.201989 AGATTACTACTTCAGAACACATGGATA 57.798 33.333 0.00 0.00 0.00 2.59
266 267 9.250624 GATTACTACTTCAGAACACATGGATAC 57.749 37.037 0.00 0.00 0.00 2.24
267 268 5.978814 ACTACTTCAGAACACATGGATACC 58.021 41.667 0.00 0.00 0.00 2.73
268 269 5.721960 ACTACTTCAGAACACATGGATACCT 59.278 40.000 0.00 0.00 0.00 3.08
269 270 5.505181 ACTTCAGAACACATGGATACCTT 57.495 39.130 0.00 0.00 0.00 3.50
270 271 5.248640 ACTTCAGAACACATGGATACCTTG 58.751 41.667 0.00 0.00 35.21 3.61
271 272 4.908601 TCAGAACACATGGATACCTTGT 57.091 40.909 0.00 0.00 41.60 3.16
272 273 4.832248 TCAGAACACATGGATACCTTGTC 58.168 43.478 0.00 0.00 39.41 3.18
273 274 4.532126 TCAGAACACATGGATACCTTGTCT 59.468 41.667 0.00 0.31 39.41 3.41
274 275 5.719563 TCAGAACACATGGATACCTTGTCTA 59.280 40.000 0.00 0.00 39.41 2.59
275 276 5.812642 CAGAACACATGGATACCTTGTCTAC 59.187 44.000 0.00 2.60 39.41 2.59
276 277 5.721960 AGAACACATGGATACCTTGTCTACT 59.278 40.000 0.00 4.33 39.41 2.57
277 278 6.213600 AGAACACATGGATACCTTGTCTACTT 59.786 38.462 0.00 0.00 39.41 2.24
278 279 5.978814 ACACATGGATACCTTGTCTACTTC 58.021 41.667 0.00 0.00 39.41 3.01
279 280 5.043903 CACATGGATACCTTGTCTACTTCG 58.956 45.833 0.00 0.00 39.41 3.79
280 281 4.954202 ACATGGATACCTTGTCTACTTCGA 59.046 41.667 0.00 0.00 37.33 3.71
281 282 5.598830 ACATGGATACCTTGTCTACTTCGAT 59.401 40.000 0.00 0.00 37.33 3.59
282 283 6.098409 ACATGGATACCTTGTCTACTTCGATT 59.902 38.462 0.00 0.00 37.33 3.34
283 284 6.145338 TGGATACCTTGTCTACTTCGATTC 57.855 41.667 0.00 0.00 0.00 2.52
284 285 5.892119 TGGATACCTTGTCTACTTCGATTCT 59.108 40.000 0.00 0.00 0.00 2.40
285 286 6.380274 TGGATACCTTGTCTACTTCGATTCTT 59.620 38.462 0.00 0.00 0.00 2.52
286 287 6.697892 GGATACCTTGTCTACTTCGATTCTTG 59.302 42.308 0.00 0.00 0.00 3.02
287 288 5.723672 ACCTTGTCTACTTCGATTCTTGA 57.276 39.130 0.00 0.00 0.00 3.02
288 289 6.287589 ACCTTGTCTACTTCGATTCTTGAT 57.712 37.500 0.00 0.00 0.00 2.57
289 290 6.334202 ACCTTGTCTACTTCGATTCTTGATC 58.666 40.000 0.00 0.00 0.00 2.92
299 300 2.483876 GATTCTTGATCGGCGGATTCA 58.516 47.619 7.21 5.49 31.51 2.57
300 301 2.620251 TTCTTGATCGGCGGATTCAT 57.380 45.000 7.21 0.00 31.51 2.57
301 302 2.620251 TCTTGATCGGCGGATTCATT 57.380 45.000 7.21 0.00 31.51 2.57
302 303 2.212652 TCTTGATCGGCGGATTCATTG 58.787 47.619 7.21 5.11 31.51 2.82
303 304 1.942657 CTTGATCGGCGGATTCATTGT 59.057 47.619 7.21 0.00 31.51 2.71
304 305 2.900716 TGATCGGCGGATTCATTGTA 57.099 45.000 7.21 0.00 31.51 2.41
305 306 2.754472 TGATCGGCGGATTCATTGTAG 58.246 47.619 7.21 0.00 31.51 2.74
306 307 2.364002 TGATCGGCGGATTCATTGTAGA 59.636 45.455 7.21 0.00 31.51 2.59
307 308 3.006859 TGATCGGCGGATTCATTGTAGAT 59.993 43.478 7.21 0.00 31.51 1.98
319 320 8.341173 GGATTCATTGTAGATGCTTCTTACTTG 58.659 37.037 7.51 2.45 33.17 3.16
321 322 6.115446 TCATTGTAGATGCTTCTTACTTGGG 58.885 40.000 7.51 0.00 33.17 4.12
412 413 1.838073 CGGTGGGTGGACCTTAAGCT 61.838 60.000 0.00 0.00 41.11 3.74
433 434 1.026584 CAAGCAATCGCCCATCATCA 58.973 50.000 0.00 0.00 39.83 3.07
434 435 1.001706 CAAGCAATCGCCCATCATCAG 60.002 52.381 0.00 0.00 39.83 2.90
467 468 7.138054 AGGAGTGAAAAGGAAGAAGAGTAAA 57.862 36.000 0.00 0.00 0.00 2.01
468 469 7.574607 AGGAGTGAAAAGGAAGAAGAGTAAAA 58.425 34.615 0.00 0.00 0.00 1.52
469 470 7.499563 AGGAGTGAAAAGGAAGAAGAGTAAAAC 59.500 37.037 0.00 0.00 0.00 2.43
470 471 7.282450 GGAGTGAAAAGGAAGAAGAGTAAAACA 59.718 37.037 0.00 0.00 0.00 2.83
472 473 9.190317 AGTGAAAAGGAAGAAGAGTAAAACATT 57.810 29.630 0.00 0.00 0.00 2.71
473 474 9.452065 GTGAAAAGGAAGAAGAGTAAAACATTC 57.548 33.333 0.00 0.00 0.00 2.67
474 475 8.342634 TGAAAAGGAAGAAGAGTAAAACATTCG 58.657 33.333 0.00 0.00 0.00 3.34
475 476 5.864628 AGGAAGAAGAGTAAAACATTCGC 57.135 39.130 0.00 0.00 0.00 4.70
476 477 4.695928 AGGAAGAAGAGTAAAACATTCGCC 59.304 41.667 0.00 0.00 0.00 5.54
477 478 4.695928 GGAAGAAGAGTAAAACATTCGCCT 59.304 41.667 0.00 0.00 0.00 5.52
481 482 4.015872 AGAGTAAAACATTCGCCTGGAA 57.984 40.909 0.00 0.00 39.42 3.53
504 505 5.065914 AGTTTCTGCAGCACTTTAATCTCA 58.934 37.500 9.47 0.00 0.00 3.27
510 511 4.577693 TGCAGCACTTTAATCTCATCCATC 59.422 41.667 0.00 0.00 0.00 3.51
513 514 4.130118 GCACTTTAATCTCATCCATCCGT 58.870 43.478 0.00 0.00 0.00 4.69
586 589 5.321927 TCAAAACTAGATTGGGACCCTTTC 58.678 41.667 13.00 8.58 0.00 2.62
589 592 2.500504 ACTAGATTGGGACCCTTTCGAC 59.499 50.000 13.00 0.00 0.00 4.20
594 597 0.547075 TGGGACCCTTTCGACAAACA 59.453 50.000 13.00 0.00 0.00 2.83
602 605 3.181491 CCCTTTCGACAAACAAAAGCTGA 60.181 43.478 0.00 0.00 0.00 4.26
641 644 8.034215 TGTAAGATTTAATTGGGCTTGATGTTG 58.966 33.333 0.00 0.00 0.00 3.33
671 693 9.733556 AAAAAGGTTTTAATTGGGCTTTATAGG 57.266 29.630 0.00 0.00 0.00 2.57
672 694 8.444010 AAAGGTTTTAATTGGGCTTTATAGGT 57.556 30.769 0.00 0.00 0.00 3.08
673 695 9.549984 AAAGGTTTTAATTGGGCTTTATAGGTA 57.450 29.630 0.00 0.00 0.00 3.08
674 696 8.529424 AGGTTTTAATTGGGCTTTATAGGTAC 57.471 34.615 0.00 0.00 0.00 3.34
675 697 7.562454 AGGTTTTAATTGGGCTTTATAGGTACC 59.438 37.037 2.73 2.73 0.00 3.34
676 698 7.201938 GGTTTTAATTGGGCTTTATAGGTACCC 60.202 40.741 8.74 0.00 41.24 3.69
677 699 4.464652 AATTGGGCTTTATAGGTACCCC 57.535 45.455 8.74 0.00 40.04 4.95
678 700 2.901991 TGGGCTTTATAGGTACCCCT 57.098 50.000 8.74 0.00 45.51 4.79
680 702 4.298951 TGGGCTTTATAGGTACCCCTAA 57.701 45.455 8.74 3.92 46.41 2.69
681 703 4.644010 TGGGCTTTATAGGTACCCCTAAA 58.356 43.478 8.74 11.65 46.41 1.85
682 704 5.045140 TGGGCTTTATAGGTACCCCTAAAA 58.955 41.667 8.74 3.86 46.41 1.52
683 705 5.495436 TGGGCTTTATAGGTACCCCTAAAAA 59.505 40.000 8.74 2.09 46.41 1.94
684 706 6.066690 GGGCTTTATAGGTACCCCTAAAAAG 58.933 44.000 8.74 12.30 46.41 2.27
685 707 6.126390 GGGCTTTATAGGTACCCCTAAAAAGA 60.126 42.308 19.20 2.02 46.41 2.52
686 708 7.422207 GGGCTTTATAGGTACCCCTAAAAAGAT 60.422 40.741 19.20 0.00 46.41 2.40
687 709 7.447545 GGCTTTATAGGTACCCCTAAAAAGATG 59.552 40.741 19.20 9.55 46.41 2.90
688 710 7.447545 GCTTTATAGGTACCCCTAAAAAGATGG 59.552 40.741 19.20 9.08 46.41 3.51
689 711 5.924769 ATAGGTACCCCTAAAAAGATGGG 57.075 43.478 8.74 0.00 46.41 4.00
690 712 2.243994 AGGTACCCCTAAAAAGATGGGC 59.756 50.000 8.74 0.00 42.07 5.36
691 713 2.243994 GGTACCCCTAAAAAGATGGGCT 59.756 50.000 0.00 0.00 42.07 5.19
692 714 3.309629 GGTACCCCTAAAAAGATGGGCTT 60.310 47.826 0.00 0.00 42.07 4.35
693 715 7.015900 AGGTACCCCTAAAAAGATGGGCTTT 62.016 44.000 8.74 0.00 43.54 3.51
694 716 4.685513 ACCCCTAAAAAGATGGGCTTTA 57.314 40.909 0.00 0.00 45.85 1.85
695 717 5.220872 ACCCCTAAAAAGATGGGCTTTAT 57.779 39.130 0.00 0.00 45.85 1.40
696 718 6.349897 ACCCCTAAAAAGATGGGCTTTATA 57.650 37.500 0.00 0.00 45.85 0.98
739 761 3.304829 TGGTTCCCCTCCAAAAGAAAAG 58.695 45.455 0.00 0.00 31.50 2.27
881 903 0.109086 CTGTCGTCTTCACCATCGCT 60.109 55.000 0.00 0.00 0.00 4.93
887 912 2.003301 GTCTTCACCATCGCTTCCTTC 58.997 52.381 0.00 0.00 0.00 3.46
891 916 1.902508 TCACCATCGCTTCCTTCTTCT 59.097 47.619 0.00 0.00 0.00 2.85
892 917 2.303022 TCACCATCGCTTCCTTCTTCTT 59.697 45.455 0.00 0.00 0.00 2.52
893 918 2.417933 CACCATCGCTTCCTTCTTCTTG 59.582 50.000 0.00 0.00 0.00 3.02
894 919 2.039084 ACCATCGCTTCCTTCTTCTTGT 59.961 45.455 0.00 0.00 0.00 3.16
898 923 3.804036 TCGCTTCCTTCTTCTTGTTCAA 58.196 40.909 0.00 0.00 0.00 2.69
899 924 4.389374 TCGCTTCCTTCTTCTTGTTCAAT 58.611 39.130 0.00 0.00 0.00 2.57
900 925 4.452455 TCGCTTCCTTCTTCTTGTTCAATC 59.548 41.667 0.00 0.00 0.00 2.67
901 926 4.453819 CGCTTCCTTCTTCTTGTTCAATCT 59.546 41.667 0.00 0.00 0.00 2.40
902 927 5.390356 CGCTTCCTTCTTCTTGTTCAATCTC 60.390 44.000 0.00 0.00 0.00 2.75
903 928 5.471456 GCTTCCTTCTTCTTGTTCAATCTCA 59.529 40.000 0.00 0.00 0.00 3.27
904 929 6.348376 GCTTCCTTCTTCTTGTTCAATCTCAG 60.348 42.308 0.00 0.00 0.00 3.35
925 950 0.250209 CCCATCCTCTCCTTCATGCG 60.250 60.000 0.00 0.00 0.00 4.73
926 951 0.883814 CCATCCTCTCCTTCATGCGC 60.884 60.000 0.00 0.00 0.00 6.09
950 975 4.697756 CGGCTTCGGTTGGCTCCA 62.698 66.667 0.00 0.00 0.00 3.86
988 1013 2.349438 GCGAGATTGCGAACTTGAACAA 60.349 45.455 2.62 0.00 0.00 2.83
992 1017 1.757682 TTGCGAACTTGAACAAGGGT 58.242 45.000 17.05 6.20 42.53 4.34
1154 1186 9.064706 CCATTTTCTCTTATGTTCTCAGCATAT 57.935 33.333 0.00 0.00 0.00 1.78
1188 1220 4.965119 ACAAATTCATCCGTTTAGCTCC 57.035 40.909 0.00 0.00 0.00 4.70
1217 1249 3.256136 CCGTACAAATTGCCAAAACCCTA 59.744 43.478 0.00 0.00 0.00 3.53
1242 1274 4.808558 TGAAATTTTCATGCTCCTTTCCG 58.191 39.130 7.74 0.00 34.08 4.30
1259 1291 5.127356 CCTTTCCGTAGATAGTCCTTCAGTT 59.873 44.000 0.00 0.00 0.00 3.16
1325 1358 7.287005 ACAGTTAATATGGATCGGAGTGACTAA 59.713 37.037 0.00 0.00 0.00 2.24
1433 1466 1.729586 ACCAGCTAGTTCCAGTTCCA 58.270 50.000 0.00 0.00 0.00 3.53
1434 1467 1.625818 ACCAGCTAGTTCCAGTTCCAG 59.374 52.381 0.00 0.00 0.00 3.86
1435 1468 1.625818 CCAGCTAGTTCCAGTTCCAGT 59.374 52.381 0.00 0.00 0.00 4.00
1436 1469 2.039084 CCAGCTAGTTCCAGTTCCAGTT 59.961 50.000 0.00 0.00 0.00 3.16
1437 1470 3.330267 CAGCTAGTTCCAGTTCCAGTTC 58.670 50.000 0.00 0.00 0.00 3.01
1438 1471 2.303311 AGCTAGTTCCAGTTCCAGTTCC 59.697 50.000 0.00 0.00 0.00 3.62
1439 1472 2.038557 GCTAGTTCCAGTTCCAGTTCCA 59.961 50.000 0.00 0.00 0.00 3.53
1480 1513 4.809070 GCTTCAGCACCCAGAGTT 57.191 55.556 0.00 0.00 41.59 3.01
2571 2608 1.533033 TCCAACGAGGAGGCACTGA 60.533 57.895 0.00 0.00 43.07 3.41
2690 2727 1.743958 GGATTCCTCGAGACGAACAGA 59.256 52.381 15.71 0.00 34.74 3.41
2706 2743 0.521450 CAGACGTCTCGACATCGTGG 60.521 60.000 16.96 0.00 40.80 4.94
2789 2826 2.512515 GAGGCACATCGGCAGGTC 60.513 66.667 0.00 0.00 44.47 3.85
3150 3187 9.193133 CAAAAGAGAAGTACGAGTTGATTCTTA 57.807 33.333 0.00 0.00 30.62 2.10
3414 3451 0.108396 CCGTACCATGATGGATGCCA 59.892 55.000 20.11 0.00 40.96 4.92
3470 3507 0.467804 GCTCCCACCTCAAGGATCTC 59.532 60.000 2.30 0.00 38.94 2.75
3512 3549 3.192844 AGGTGCTTGCTTTGAATCATCAG 59.807 43.478 0.00 0.00 36.78 2.90
3593 3630 1.820906 GATGGATGCCGCAAGCTCA 60.821 57.895 0.00 0.00 44.23 4.26
3784 3821 2.730090 CGAGTGCAGAACAATCAATGGC 60.730 50.000 0.00 0.00 43.60 4.40
3849 3886 1.662044 GAGGTGCTTGCTTTGGGTG 59.338 57.895 0.00 0.00 0.00 4.61
3850 3887 1.076044 AGGTGCTTGCTTTGGGTGT 60.076 52.632 0.00 0.00 0.00 4.16
4034 4071 2.675519 GCTCCAATCACAGAGAGCG 58.324 57.895 0.00 0.00 42.02 5.03
4172 4209 0.687354 GCCTGAGGTTGAAGGAGACA 59.313 55.000 0.00 0.00 35.40 3.41
4282 4319 4.849329 GCTGGCTGCAATGCTCGC 62.849 66.667 11.80 9.12 42.31 5.03
4570 4610 1.404391 GTGCAAAGGGATGATGAGCAG 59.596 52.381 0.00 0.00 0.00 4.24
4604 4644 2.701606 TCGAGCGACGACGATGAG 59.298 61.111 12.29 1.21 46.45 2.90
4987 5028 5.697633 AGAAAAGCCACTTGCATTGTATTTG 59.302 36.000 0.00 0.00 44.83 2.32
5038 5080 1.675310 CTTGGCGGCACATTCAGGA 60.675 57.895 12.92 0.00 0.00 3.86
5050 5092 3.001634 CACATTCAGGATTCATCGGTTCG 59.998 47.826 0.00 0.00 0.00 3.95
5140 5183 0.461516 ATCATGCACGCTCTGGACTG 60.462 55.000 0.00 0.00 0.00 3.51
5141 5184 2.435586 ATGCACGCTCTGGACTGC 60.436 61.111 0.00 0.00 0.00 4.40
5312 5355 4.463879 CTGGGAGGCTCAGCACCG 62.464 72.222 17.69 1.49 0.00 4.94
5320 5363 3.790437 CTCAGCACCGCCCAGGAT 61.790 66.667 0.00 0.00 45.00 3.24
5423 5499 5.304686 TGGGTCAATAACTAGCTTATGGG 57.695 43.478 0.00 0.00 0.00 4.00
5424 5500 4.072839 GGGTCAATAACTAGCTTATGGGC 58.927 47.826 0.00 0.00 0.00 5.36
5426 5502 4.757149 GGTCAATAACTAGCTTATGGGCTG 59.243 45.833 0.00 0.00 43.01 4.85
5427 5503 5.368989 GTCAATAACTAGCTTATGGGCTGT 58.631 41.667 0.00 0.00 43.01 4.40
5428 5504 5.237344 GTCAATAACTAGCTTATGGGCTGTG 59.763 44.000 0.00 1.44 43.01 3.66
5429 5505 5.104527 TCAATAACTAGCTTATGGGCTGTGT 60.105 40.000 0.00 1.94 43.01 3.72
5442 5519 1.270252 GGCTGTGTCCATGGTTTTTGG 60.270 52.381 12.58 0.59 35.45 3.28
5537 5614 2.706339 AACAATTGTTGGCTGCCAAA 57.294 40.000 33.75 20.98 45.73 3.28
5641 5718 4.140536 CTCTGAGCCTTTTCCCATATTCC 58.859 47.826 0.00 0.00 0.00 3.01
5695 5772 9.613428 TTTCTTCACAAGAACTGAGAGATAAAA 57.387 29.630 0.00 0.00 46.53 1.52
5824 5901 4.153835 AGTTTAGTCTACTGTCCGAGTTCG 59.846 45.833 0.00 0.00 35.96 3.95
6070 6148 2.367567 TCAGCAAAGGTAGTTCGGACTT 59.632 45.455 0.00 0.00 37.33 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.773033 AGGCATAATTTTATTCAGATGTTCCT 57.227 30.769 0.00 0.00 0.00 3.36
1 2 9.822185 AAAGGCATAATTTTATTCAGATGTTCC 57.178 29.630 0.00 0.00 0.00 3.62
3 4 9.822185 GGAAAGGCATAATTTTATTCAGATGTT 57.178 29.630 0.00 0.00 0.00 2.71
4 5 9.205513 AGGAAAGGCATAATTTTATTCAGATGT 57.794 29.630 0.00 0.00 0.00 3.06
5 6 9.688592 GAGGAAAGGCATAATTTTATTCAGATG 57.311 33.333 0.00 0.00 0.00 2.90
6 7 9.425248 TGAGGAAAGGCATAATTTTATTCAGAT 57.575 29.630 0.00 0.00 0.00 2.90
7 8 8.821686 TGAGGAAAGGCATAATTTTATTCAGA 57.178 30.769 0.00 0.00 0.00 3.27
12 13 9.965824 CGTTTATGAGGAAAGGCATAATTTTAT 57.034 29.630 0.00 0.00 36.98 1.40
13 14 9.179909 TCGTTTATGAGGAAAGGCATAATTTTA 57.820 29.630 0.00 0.00 36.98 1.52
14 15 8.062065 TCGTTTATGAGGAAAGGCATAATTTT 57.938 30.769 0.00 0.00 36.98 1.82
15 16 7.639113 TCGTTTATGAGGAAAGGCATAATTT 57.361 32.000 0.00 0.00 36.98 1.82
16 17 7.285401 ACATCGTTTATGAGGAAAGGCATAATT 59.715 33.333 0.00 0.00 39.07 1.40
17 18 6.772716 ACATCGTTTATGAGGAAAGGCATAAT 59.227 34.615 0.00 0.00 39.07 1.28
18 19 6.119536 ACATCGTTTATGAGGAAAGGCATAA 58.880 36.000 0.00 0.00 39.07 1.90
19 20 5.680619 ACATCGTTTATGAGGAAAGGCATA 58.319 37.500 0.00 0.00 39.07 3.14
20 21 4.526970 ACATCGTTTATGAGGAAAGGCAT 58.473 39.130 0.00 0.00 39.07 4.40
21 22 3.950397 ACATCGTTTATGAGGAAAGGCA 58.050 40.909 0.00 0.00 39.07 4.75
22 23 5.585047 AGTTACATCGTTTATGAGGAAAGGC 59.415 40.000 0.00 0.00 39.07 4.35
23 24 6.456988 GCAGTTACATCGTTTATGAGGAAAGG 60.457 42.308 0.00 0.00 39.07 3.11
24 25 6.313905 AGCAGTTACATCGTTTATGAGGAAAG 59.686 38.462 0.00 0.00 39.07 2.62
25 26 6.170506 AGCAGTTACATCGTTTATGAGGAAA 58.829 36.000 0.00 0.00 39.07 3.13
26 27 5.730550 AGCAGTTACATCGTTTATGAGGAA 58.269 37.500 0.00 0.00 39.07 3.36
27 28 5.339008 AGCAGTTACATCGTTTATGAGGA 57.661 39.130 0.00 0.00 39.07 3.71
28 29 7.715265 AATAGCAGTTACATCGTTTATGAGG 57.285 36.000 0.00 0.00 39.07 3.86
29 30 9.035607 AGAAATAGCAGTTACATCGTTTATGAG 57.964 33.333 0.00 0.00 39.07 2.90
30 31 8.942338 AGAAATAGCAGTTACATCGTTTATGA 57.058 30.769 0.00 0.00 39.07 2.15
99 100 2.888212 AGCTATGTGGGAGAGATCCTC 58.112 52.381 0.00 3.35 41.22 3.71
100 101 3.773560 GTAGCTATGTGGGAGAGATCCT 58.226 50.000 0.00 0.00 0.00 3.24
101 102 2.490115 CGTAGCTATGTGGGAGAGATCC 59.510 54.545 4.68 0.00 0.00 3.36
102 103 3.840890 CGTAGCTATGTGGGAGAGATC 57.159 52.381 4.68 0.00 0.00 2.75
118 119 5.821516 ATTAGATCGGGATTAGAGCGTAG 57.178 43.478 0.00 0.00 0.00 3.51
119 120 5.105877 CCAATTAGATCGGGATTAGAGCGTA 60.106 44.000 0.00 0.00 0.00 4.42
120 121 4.322049 CCAATTAGATCGGGATTAGAGCGT 60.322 45.833 0.00 0.00 0.00 5.07
121 122 4.177026 CCAATTAGATCGGGATTAGAGCG 58.823 47.826 0.00 0.00 0.00 5.03
122 123 3.935828 GCCAATTAGATCGGGATTAGAGC 59.064 47.826 0.00 0.00 0.00 4.09
123 124 4.223923 AGGCCAATTAGATCGGGATTAGAG 59.776 45.833 5.01 0.00 0.00 2.43
124 125 4.168101 AGGCCAATTAGATCGGGATTAGA 58.832 43.478 5.01 0.00 0.00 2.10
125 126 4.559862 AGGCCAATTAGATCGGGATTAG 57.440 45.455 5.01 0.00 0.00 1.73
126 127 4.841813 TGTAGGCCAATTAGATCGGGATTA 59.158 41.667 5.01 0.00 0.00 1.75
127 128 3.650942 TGTAGGCCAATTAGATCGGGATT 59.349 43.478 5.01 0.00 0.00 3.01
128 129 3.248024 TGTAGGCCAATTAGATCGGGAT 58.752 45.455 5.01 0.00 0.00 3.85
129 130 2.632996 CTGTAGGCCAATTAGATCGGGA 59.367 50.000 5.01 0.00 0.00 5.14
130 131 2.632996 TCTGTAGGCCAATTAGATCGGG 59.367 50.000 5.01 0.00 0.00 5.14
131 132 4.543590 ATCTGTAGGCCAATTAGATCGG 57.456 45.455 5.01 0.00 0.00 4.18
132 133 6.809196 GTCTAATCTGTAGGCCAATTAGATCG 59.191 42.308 18.92 11.56 40.75 3.69
133 134 7.902087 AGTCTAATCTGTAGGCCAATTAGATC 58.098 38.462 18.92 14.72 40.75 2.75
134 135 7.038658 GGAGTCTAATCTGTAGGCCAATTAGAT 60.039 40.741 18.92 13.48 40.75 1.98
135 136 6.267928 GGAGTCTAATCTGTAGGCCAATTAGA 59.732 42.308 5.01 12.09 38.02 2.10
136 137 6.268847 AGGAGTCTAATCTGTAGGCCAATTAG 59.731 42.308 5.01 10.03 34.47 1.73
137 138 6.143915 AGGAGTCTAATCTGTAGGCCAATTA 58.856 40.000 5.01 0.13 0.00 1.40
138 139 4.971924 AGGAGTCTAATCTGTAGGCCAATT 59.028 41.667 5.01 0.00 0.00 2.32
139 140 4.561752 AGGAGTCTAATCTGTAGGCCAAT 58.438 43.478 5.01 0.00 0.00 3.16
140 141 3.995636 AGGAGTCTAATCTGTAGGCCAA 58.004 45.455 5.01 0.00 0.00 4.52
141 142 3.689872 AGGAGTCTAATCTGTAGGCCA 57.310 47.619 5.01 0.00 0.00 5.36
142 143 6.673839 AATTAGGAGTCTAATCTGTAGGCC 57.326 41.667 0.00 0.00 43.31 5.19
143 144 8.517056 GTCTAATTAGGAGTCTAATCTGTAGGC 58.483 40.741 12.54 0.00 43.31 3.93
144 145 9.575868 TGTCTAATTAGGAGTCTAATCTGTAGG 57.424 37.037 12.54 0.00 43.31 3.18
146 147 9.575868 CCTGTCTAATTAGGAGTCTAATCTGTA 57.424 37.037 12.54 0.00 43.31 2.74
147 148 8.282982 TCCTGTCTAATTAGGAGTCTAATCTGT 58.717 37.037 12.54 0.00 43.31 3.41
148 149 8.698973 TCCTGTCTAATTAGGAGTCTAATCTG 57.301 38.462 12.54 0.00 43.31 2.90
149 150 9.138596 GTTCCTGTCTAATTAGGAGTCTAATCT 57.861 37.037 12.54 0.00 43.31 2.40
150 151 8.361889 GGTTCCTGTCTAATTAGGAGTCTAATC 58.638 40.741 12.54 0.00 43.31 1.75
151 152 7.014422 CGGTTCCTGTCTAATTAGGAGTCTAAT 59.986 40.741 12.54 0.00 45.32 1.73
152 153 6.320672 CGGTTCCTGTCTAATTAGGAGTCTAA 59.679 42.308 12.54 0.00 43.54 2.10
153 154 5.826737 CGGTTCCTGTCTAATTAGGAGTCTA 59.173 44.000 12.54 0.00 43.54 2.59
154 155 4.645588 CGGTTCCTGTCTAATTAGGAGTCT 59.354 45.833 12.54 0.00 43.54 3.24
155 156 4.737055 GCGGTTCCTGTCTAATTAGGAGTC 60.737 50.000 12.54 2.59 43.54 3.36
156 157 3.132467 GCGGTTCCTGTCTAATTAGGAGT 59.868 47.826 12.54 0.00 43.54 3.85
157 158 3.492829 GGCGGTTCCTGTCTAATTAGGAG 60.493 52.174 12.54 8.64 43.54 3.69
158 159 2.433239 GGCGGTTCCTGTCTAATTAGGA 59.567 50.000 12.54 1.48 41.20 2.94
159 160 2.169769 TGGCGGTTCCTGTCTAATTAGG 59.830 50.000 12.54 0.00 35.26 2.69
160 161 3.458189 CTGGCGGTTCCTGTCTAATTAG 58.542 50.000 6.11 6.11 35.26 1.73
161 162 2.169769 CCTGGCGGTTCCTGTCTAATTA 59.830 50.000 0.00 0.00 35.26 1.40
162 163 1.065418 CCTGGCGGTTCCTGTCTAATT 60.065 52.381 0.00 0.00 35.26 1.40
163 164 0.541863 CCTGGCGGTTCCTGTCTAAT 59.458 55.000 0.00 0.00 35.26 1.73
164 165 1.980052 CCTGGCGGTTCCTGTCTAA 59.020 57.895 0.00 0.00 35.26 2.10
165 166 2.656069 GCCTGGCGGTTCCTGTCTA 61.656 63.158 1.35 0.00 35.26 2.59
166 167 4.021925 GCCTGGCGGTTCCTGTCT 62.022 66.667 1.35 0.00 35.26 3.41
167 168 3.553095 AAGCCTGGCGGTTCCTGTC 62.553 63.158 13.96 0.00 35.26 3.51
168 169 2.640581 AAAAGCCTGGCGGTTCCTGT 62.641 55.000 13.96 0.00 35.26 4.00
169 170 1.463553 AAAAAGCCTGGCGGTTCCTG 61.464 55.000 13.96 0.00 35.26 3.86
170 171 1.152546 AAAAAGCCTGGCGGTTCCT 60.153 52.632 13.96 0.49 35.26 3.36
171 172 1.179174 AGAAAAAGCCTGGCGGTTCC 61.179 55.000 20.89 10.50 0.00 3.62
172 173 1.530323 TAGAAAAAGCCTGGCGGTTC 58.470 50.000 13.96 16.76 0.00 3.62
173 174 2.092323 GATAGAAAAAGCCTGGCGGTT 58.908 47.619 13.96 8.96 0.00 4.44
174 175 1.282157 AGATAGAAAAAGCCTGGCGGT 59.718 47.619 13.96 2.08 0.00 5.68
175 176 1.943340 GAGATAGAAAAAGCCTGGCGG 59.057 52.381 13.96 0.00 0.00 6.13
176 177 2.632377 TGAGATAGAAAAAGCCTGGCG 58.368 47.619 13.96 0.00 0.00 5.69
177 178 4.460731 ACTTTGAGATAGAAAAAGCCTGGC 59.539 41.667 11.65 11.65 34.88 4.85
178 179 6.581171 AACTTTGAGATAGAAAAAGCCTGG 57.419 37.500 0.00 0.00 34.88 4.45
179 180 8.877808 AAAAACTTTGAGATAGAAAAAGCCTG 57.122 30.769 0.00 0.00 34.88 4.85
201 202 3.945285 ACACAAAGAAGAGCTCCGAAAAA 59.055 39.130 10.93 0.00 0.00 1.94
202 203 3.541632 ACACAAAGAAGAGCTCCGAAAA 58.458 40.909 10.93 0.00 0.00 2.29
203 204 3.194005 ACACAAAGAAGAGCTCCGAAA 57.806 42.857 10.93 0.00 0.00 3.46
204 205 2.910688 ACACAAAGAAGAGCTCCGAA 57.089 45.000 10.93 0.00 0.00 4.30
205 206 2.351447 CGTACACAAAGAAGAGCTCCGA 60.351 50.000 10.93 0.00 0.00 4.55
206 207 1.986378 CGTACACAAAGAAGAGCTCCG 59.014 52.381 10.93 0.00 0.00 4.63
207 208 2.987821 GACGTACACAAAGAAGAGCTCC 59.012 50.000 10.93 0.00 0.00 4.70
208 209 2.657372 CGACGTACACAAAGAAGAGCTC 59.343 50.000 5.27 5.27 0.00 4.09
209 210 2.292569 TCGACGTACACAAAGAAGAGCT 59.707 45.455 0.00 0.00 0.00 4.09
210 211 2.657372 CTCGACGTACACAAAGAAGAGC 59.343 50.000 0.00 0.00 0.00 4.09
211 212 3.664486 CACTCGACGTACACAAAGAAGAG 59.336 47.826 0.00 0.00 0.00 2.85
212 213 3.065786 ACACTCGACGTACACAAAGAAGA 59.934 43.478 0.00 0.00 0.00 2.87
213 214 3.369385 ACACTCGACGTACACAAAGAAG 58.631 45.455 0.00 0.00 0.00 2.85
214 215 3.425577 ACACTCGACGTACACAAAGAA 57.574 42.857 0.00 0.00 0.00 2.52
215 216 3.110358 CAACACTCGACGTACACAAAGA 58.890 45.455 0.00 0.00 0.00 2.52
216 217 2.855963 ACAACACTCGACGTACACAAAG 59.144 45.455 0.00 0.00 0.00 2.77
217 218 2.853594 GACAACACTCGACGTACACAAA 59.146 45.455 0.00 0.00 0.00 2.83
218 219 2.159407 TGACAACACTCGACGTACACAA 60.159 45.455 0.00 0.00 0.00 3.33
219 220 1.401199 TGACAACACTCGACGTACACA 59.599 47.619 0.00 0.00 0.00 3.72
220 221 2.041966 CTGACAACACTCGACGTACAC 58.958 52.381 0.00 0.00 0.00 2.90
221 222 1.941975 TCTGACAACACTCGACGTACA 59.058 47.619 0.00 0.00 0.00 2.90
222 223 2.675767 TCTGACAACACTCGACGTAC 57.324 50.000 0.00 0.00 0.00 3.67
223 224 3.909776 AATCTGACAACACTCGACGTA 57.090 42.857 0.00 0.00 0.00 3.57
224 225 2.795175 AATCTGACAACACTCGACGT 57.205 45.000 0.00 0.00 0.00 4.34
225 226 3.822996 AGTAATCTGACAACACTCGACG 58.177 45.455 0.00 0.00 0.00 5.12
226 227 5.940595 AGTAGTAATCTGACAACACTCGAC 58.059 41.667 0.00 0.00 0.00 4.20
227 228 6.206048 TGAAGTAGTAATCTGACAACACTCGA 59.794 38.462 0.00 0.00 0.00 4.04
228 229 6.379386 TGAAGTAGTAATCTGACAACACTCG 58.621 40.000 0.00 0.00 0.00 4.18
229 230 7.594714 TCTGAAGTAGTAATCTGACAACACTC 58.405 38.462 0.00 0.00 0.00 3.51
230 231 7.526142 TCTGAAGTAGTAATCTGACAACACT 57.474 36.000 0.00 0.00 0.00 3.55
231 232 7.652105 TGTTCTGAAGTAGTAATCTGACAACAC 59.348 37.037 0.00 0.00 0.00 3.32
232 233 7.652105 GTGTTCTGAAGTAGTAATCTGACAACA 59.348 37.037 0.00 0.00 0.00 3.33
233 234 7.652105 TGTGTTCTGAAGTAGTAATCTGACAAC 59.348 37.037 0.00 0.00 0.00 3.32
234 235 7.722363 TGTGTTCTGAAGTAGTAATCTGACAA 58.278 34.615 0.00 0.00 0.00 3.18
235 236 7.284919 TGTGTTCTGAAGTAGTAATCTGACA 57.715 36.000 0.00 0.00 0.00 3.58
236 237 7.276658 CCATGTGTTCTGAAGTAGTAATCTGAC 59.723 40.741 0.00 0.00 0.00 3.51
237 238 7.178451 TCCATGTGTTCTGAAGTAGTAATCTGA 59.822 37.037 0.00 0.00 0.00 3.27
238 239 7.323420 TCCATGTGTTCTGAAGTAGTAATCTG 58.677 38.462 0.00 0.00 0.00 2.90
239 240 7.482169 TCCATGTGTTCTGAAGTAGTAATCT 57.518 36.000 0.00 0.00 0.00 2.40
240 241 9.250624 GTATCCATGTGTTCTGAAGTAGTAATC 57.749 37.037 0.00 0.00 0.00 1.75
241 242 8.204836 GGTATCCATGTGTTCTGAAGTAGTAAT 58.795 37.037 0.00 0.00 0.00 1.89
242 243 7.399191 AGGTATCCATGTGTTCTGAAGTAGTAA 59.601 37.037 0.00 0.00 0.00 2.24
243 244 6.895756 AGGTATCCATGTGTTCTGAAGTAGTA 59.104 38.462 0.00 0.00 0.00 1.82
244 245 5.721960 AGGTATCCATGTGTTCTGAAGTAGT 59.278 40.000 0.00 0.00 0.00 2.73
245 246 6.227298 AGGTATCCATGTGTTCTGAAGTAG 57.773 41.667 0.00 0.00 0.00 2.57
246 247 6.013725 ACAAGGTATCCATGTGTTCTGAAGTA 60.014 38.462 0.00 0.00 33.98 2.24
247 248 5.221925 ACAAGGTATCCATGTGTTCTGAAGT 60.222 40.000 0.00 0.00 33.98 3.01
248 249 5.248640 ACAAGGTATCCATGTGTTCTGAAG 58.751 41.667 0.00 0.00 33.98 3.02
249 250 5.013079 AGACAAGGTATCCATGTGTTCTGAA 59.987 40.000 1.39 0.00 35.48 3.02
250 251 4.532126 AGACAAGGTATCCATGTGTTCTGA 59.468 41.667 1.39 0.00 35.48 3.27
251 252 4.836825 AGACAAGGTATCCATGTGTTCTG 58.163 43.478 1.39 0.00 35.48 3.02
252 253 5.721960 AGTAGACAAGGTATCCATGTGTTCT 59.278 40.000 1.39 0.00 35.48 3.01
253 254 5.978814 AGTAGACAAGGTATCCATGTGTTC 58.021 41.667 1.39 0.00 35.48 3.18
254 255 6.374417 AAGTAGACAAGGTATCCATGTGTT 57.626 37.500 1.39 0.00 35.48 3.32
255 256 5.394224 CGAAGTAGACAAGGTATCCATGTGT 60.394 44.000 1.39 0.74 35.48 3.72
256 257 5.043903 CGAAGTAGACAAGGTATCCATGTG 58.956 45.833 1.39 0.00 35.48 3.21
257 258 4.954202 TCGAAGTAGACAAGGTATCCATGT 59.046 41.667 0.00 0.00 38.20 3.21
258 259 5.515797 TCGAAGTAGACAAGGTATCCATG 57.484 43.478 0.00 0.00 0.00 3.66
259 260 6.551601 AGAATCGAAGTAGACAAGGTATCCAT 59.448 38.462 0.00 0.00 0.00 3.41
260 261 5.892119 AGAATCGAAGTAGACAAGGTATCCA 59.108 40.000 0.00 0.00 0.00 3.41
261 262 6.394025 AGAATCGAAGTAGACAAGGTATCC 57.606 41.667 0.00 0.00 0.00 2.59
262 263 7.481642 TCAAGAATCGAAGTAGACAAGGTATC 58.518 38.462 0.00 0.00 0.00 2.24
263 264 7.406031 TCAAGAATCGAAGTAGACAAGGTAT 57.594 36.000 0.00 0.00 0.00 2.73
264 265 6.829229 TCAAGAATCGAAGTAGACAAGGTA 57.171 37.500 0.00 0.00 0.00 3.08
265 266 5.723672 TCAAGAATCGAAGTAGACAAGGT 57.276 39.130 0.00 0.00 0.00 3.50
266 267 6.820470 GATCAAGAATCGAAGTAGACAAGG 57.180 41.667 0.00 0.00 0.00 3.61
279 280 2.483876 TGAATCCGCCGATCAAGAATC 58.516 47.619 0.00 0.00 0.00 2.52
280 281 2.620251 TGAATCCGCCGATCAAGAAT 57.380 45.000 0.00 0.00 0.00 2.40
281 282 2.613595 CAATGAATCCGCCGATCAAGAA 59.386 45.455 0.00 0.00 0.00 2.52
282 283 2.212652 CAATGAATCCGCCGATCAAGA 58.787 47.619 0.00 0.00 0.00 3.02
283 284 1.942657 ACAATGAATCCGCCGATCAAG 59.057 47.619 0.00 0.00 0.00 3.02
284 285 2.036958 ACAATGAATCCGCCGATCAA 57.963 45.000 0.00 0.00 0.00 2.57
285 286 2.364002 TCTACAATGAATCCGCCGATCA 59.636 45.455 0.00 0.00 0.00 2.92
286 287 3.026630 TCTACAATGAATCCGCCGATC 57.973 47.619 0.00 0.00 0.00 3.69
287 288 3.329386 CATCTACAATGAATCCGCCGAT 58.671 45.455 0.00 0.00 0.00 4.18
288 289 2.754472 CATCTACAATGAATCCGCCGA 58.246 47.619 0.00 0.00 0.00 5.54
289 290 1.195448 GCATCTACAATGAATCCGCCG 59.805 52.381 0.00 0.00 0.00 6.46
290 291 2.498167 AGCATCTACAATGAATCCGCC 58.502 47.619 0.00 0.00 0.00 6.13
291 292 3.812053 AGAAGCATCTACAATGAATCCGC 59.188 43.478 0.00 0.00 32.88 5.54
292 293 5.998454 AAGAAGCATCTACAATGAATCCG 57.002 39.130 0.00 0.00 33.77 4.18
293 294 8.341173 CAAGTAAGAAGCATCTACAATGAATCC 58.659 37.037 0.00 0.00 33.77 3.01
294 295 8.341173 CCAAGTAAGAAGCATCTACAATGAATC 58.659 37.037 0.00 0.00 33.77 2.52
295 296 7.284034 CCCAAGTAAGAAGCATCTACAATGAAT 59.716 37.037 0.00 0.00 33.77 2.57
296 297 6.599244 CCCAAGTAAGAAGCATCTACAATGAA 59.401 38.462 0.00 0.00 33.77 2.57
297 298 6.115446 CCCAAGTAAGAAGCATCTACAATGA 58.885 40.000 0.00 0.00 33.77 2.57
298 299 5.297776 CCCCAAGTAAGAAGCATCTACAATG 59.702 44.000 0.00 0.00 33.77 2.82
299 300 5.044846 ACCCCAAGTAAGAAGCATCTACAAT 60.045 40.000 0.00 0.00 33.77 2.71
300 301 4.288626 ACCCCAAGTAAGAAGCATCTACAA 59.711 41.667 0.00 0.00 33.77 2.41
301 302 3.844211 ACCCCAAGTAAGAAGCATCTACA 59.156 43.478 0.00 0.00 33.77 2.74
302 303 4.081087 TGACCCCAAGTAAGAAGCATCTAC 60.081 45.833 0.00 0.00 33.77 2.59
303 304 4.101114 TGACCCCAAGTAAGAAGCATCTA 58.899 43.478 0.00 0.00 33.77 1.98
304 305 2.912956 TGACCCCAAGTAAGAAGCATCT 59.087 45.455 0.00 0.00 37.57 2.90
305 306 3.274288 CTGACCCCAAGTAAGAAGCATC 58.726 50.000 0.00 0.00 0.00 3.91
306 307 2.644798 ACTGACCCCAAGTAAGAAGCAT 59.355 45.455 0.00 0.00 30.37 3.79
307 308 2.054799 ACTGACCCCAAGTAAGAAGCA 58.945 47.619 0.00 0.00 30.37 3.91
319 320 5.187381 ACTTAGCTCTAACTTAACTGACCCC 59.813 44.000 0.00 0.00 0.00 4.95
321 322 7.435784 GCATACTTAGCTCTAACTTAACTGACC 59.564 40.741 0.00 0.00 0.00 4.02
412 413 0.106569 ATGATGGGCGATTGCTTGGA 60.107 50.000 4.59 0.00 42.25 3.53
433 434 0.179009 TTTCACTCCTTGCTGCTGCT 60.179 50.000 17.00 0.00 40.48 4.24
434 435 0.670162 TTTTCACTCCTTGCTGCTGC 59.330 50.000 8.89 8.89 40.20 5.25
467 468 2.554032 CAGAAACTTCCAGGCGAATGTT 59.446 45.455 0.00 0.00 0.00 2.71
468 469 2.154462 CAGAAACTTCCAGGCGAATGT 58.846 47.619 0.00 0.00 0.00 2.71
469 470 1.135575 GCAGAAACTTCCAGGCGAATG 60.136 52.381 0.00 0.00 0.00 2.67
470 471 1.168714 GCAGAAACTTCCAGGCGAAT 58.831 50.000 0.00 0.00 0.00 3.34
472 473 0.603707 CTGCAGAAACTTCCAGGCGA 60.604 55.000 8.42 0.00 0.00 5.54
473 474 1.871772 CTGCAGAAACTTCCAGGCG 59.128 57.895 8.42 0.00 0.00 5.52
474 475 1.174712 TGCTGCAGAAACTTCCAGGC 61.175 55.000 20.43 0.00 0.00 4.85
475 476 0.595095 GTGCTGCAGAAACTTCCAGG 59.405 55.000 20.43 0.00 0.00 4.45
476 477 1.602311 AGTGCTGCAGAAACTTCCAG 58.398 50.000 20.43 0.00 0.00 3.86
477 478 2.057137 AAGTGCTGCAGAAACTTCCA 57.943 45.000 22.62 6.62 27.92 3.53
481 482 5.065914 TGAGATTAAAGTGCTGCAGAAACT 58.934 37.500 20.43 17.04 0.00 2.66
510 511 3.522553 GTCCAAAGATACTTCCAGACGG 58.477 50.000 0.00 0.00 0.00 4.79
513 514 3.447586 CCTCGTCCAAAGATACTTCCAGA 59.552 47.826 0.00 0.00 0.00 3.86
586 589 2.574322 CCGATCAGCTTTTGTTTGTCG 58.426 47.619 0.00 0.00 0.00 4.35
589 592 1.270550 AGGCCGATCAGCTTTTGTTTG 59.729 47.619 0.00 0.00 0.00 2.93
594 597 0.036732 TCACAGGCCGATCAGCTTTT 59.963 50.000 0.00 0.00 0.00 2.27
602 605 1.557099 TCTTACACTCACAGGCCGAT 58.443 50.000 0.00 0.00 0.00 4.18
650 672 7.719483 GGTACCTATAAAGCCCAATTAAAACC 58.281 38.462 4.06 0.00 0.00 3.27
674 696 6.901081 CTATAAAGCCCATCTTTTTAGGGG 57.099 41.667 0.00 0.00 42.06 4.79
677 699 6.772716 TCAGCCTATAAAGCCCATCTTTTTAG 59.227 38.462 7.46 7.46 42.06 1.85
678 700 6.546034 GTCAGCCTATAAAGCCCATCTTTTTA 59.454 38.462 0.00 0.00 42.06 1.52
679 701 5.360999 GTCAGCCTATAAAGCCCATCTTTTT 59.639 40.000 0.00 0.00 42.06 1.94
680 702 4.889995 GTCAGCCTATAAAGCCCATCTTTT 59.110 41.667 0.00 0.00 42.06 2.27
681 703 4.166919 AGTCAGCCTATAAAGCCCATCTTT 59.833 41.667 0.00 0.00 46.17 2.52
682 704 3.718956 AGTCAGCCTATAAAGCCCATCTT 59.281 43.478 0.00 0.00 36.34 2.40
683 705 3.321950 AGTCAGCCTATAAAGCCCATCT 58.678 45.455 0.00 0.00 0.00 2.90
684 706 3.778954 AGTCAGCCTATAAAGCCCATC 57.221 47.619 0.00 0.00 0.00 3.51
685 707 3.203040 ACAAGTCAGCCTATAAAGCCCAT 59.797 43.478 0.00 0.00 0.00 4.00
686 708 2.576191 ACAAGTCAGCCTATAAAGCCCA 59.424 45.455 0.00 0.00 0.00 5.36
687 709 3.283259 ACAAGTCAGCCTATAAAGCCC 57.717 47.619 0.00 0.00 0.00 5.19
688 710 5.698545 CAGATACAAGTCAGCCTATAAAGCC 59.301 44.000 0.00 0.00 0.00 4.35
689 711 5.698545 CCAGATACAAGTCAGCCTATAAAGC 59.301 44.000 0.00 0.00 0.00 3.51
690 712 7.055667 TCCAGATACAAGTCAGCCTATAAAG 57.944 40.000 0.00 0.00 0.00 1.85
691 713 6.463049 GCTCCAGATACAAGTCAGCCTATAAA 60.463 42.308 0.00 0.00 0.00 1.40
692 714 5.011125 GCTCCAGATACAAGTCAGCCTATAA 59.989 44.000 0.00 0.00 0.00 0.98
693 715 4.524714 GCTCCAGATACAAGTCAGCCTATA 59.475 45.833 0.00 0.00 0.00 1.31
694 716 3.323403 GCTCCAGATACAAGTCAGCCTAT 59.677 47.826 0.00 0.00 0.00 2.57
695 717 2.695666 GCTCCAGATACAAGTCAGCCTA 59.304 50.000 0.00 0.00 0.00 3.93
696 718 1.484240 GCTCCAGATACAAGTCAGCCT 59.516 52.381 0.00 0.00 0.00 4.58
739 761 2.687935 TGTCACCAAGCTCCAGTTTTTC 59.312 45.455 0.00 0.00 0.00 2.29
881 903 6.000219 CCTGAGATTGAACAAGAAGAAGGAA 59.000 40.000 0.00 0.00 0.00 3.36
887 912 2.751806 GGGCCTGAGATTGAACAAGAAG 59.248 50.000 0.84 0.00 0.00 2.85
891 916 2.621407 GGATGGGCCTGAGATTGAACAA 60.621 50.000 4.53 0.00 0.00 2.83
892 917 1.064463 GGATGGGCCTGAGATTGAACA 60.064 52.381 4.53 0.00 0.00 3.18
893 918 1.685148 GGATGGGCCTGAGATTGAAC 58.315 55.000 4.53 0.00 0.00 3.18
904 929 0.110104 CATGAAGGAGAGGATGGGCC 59.890 60.000 0.00 0.00 0.00 5.80
983 1008 0.615850 AGCCAGCTAGACCCTTGTTC 59.384 55.000 0.00 0.00 0.00 3.18
1011 1036 0.183492 ACCTTGAGCTTGGACTGCAA 59.817 50.000 8.11 0.00 0.00 4.08
1154 1186 7.028962 CGGATGAATTTGTTGAAAGCAGATAA 58.971 34.615 0.00 0.00 0.00 1.75
1176 1208 1.213537 CGTTCGGGAGCTAAACGGA 59.786 57.895 12.68 0.00 41.41 4.69
1188 1220 0.791610 GCAATTTGTACGGCGTTCGG 60.792 55.000 21.24 2.43 44.45 4.30
1259 1291 6.881067 TCTGTTGAGGGAGTACTACTACTA 57.119 41.667 4.77 0.00 32.96 1.82
1433 1466 2.438021 TGCTGTAGTTGGAACTGGAACT 59.562 45.455 2.14 0.00 40.07 3.01
1434 1467 2.808543 CTGCTGTAGTTGGAACTGGAAC 59.191 50.000 2.14 0.00 40.07 3.62
1435 1468 2.224523 CCTGCTGTAGTTGGAACTGGAA 60.225 50.000 2.14 0.00 40.07 3.53
1436 1469 1.347707 CCTGCTGTAGTTGGAACTGGA 59.652 52.381 2.14 0.00 40.07 3.86
1437 1470 1.611673 CCCTGCTGTAGTTGGAACTGG 60.612 57.143 2.14 0.00 40.07 4.00
1438 1471 1.813513 CCCTGCTGTAGTTGGAACTG 58.186 55.000 2.14 0.00 40.07 3.16
1439 1472 0.036875 GCCCTGCTGTAGTTGGAACT 59.963 55.000 0.00 0.00 42.91 3.01
1474 1507 0.826715 TGGCTAGCCTGCTAACTCTG 59.173 55.000 33.07 0.00 36.94 3.35
1480 1513 0.253044 CAGGTTTGGCTAGCCTGCTA 59.747 55.000 33.07 11.61 42.54 3.49
1583 1616 2.687805 CGGACTTGTCGAGCGGAGA 61.688 63.158 0.00 0.00 0.00 3.71
1641 1674 1.302511 GGCGAGGCCTTGAAGTTCA 60.303 57.895 25.25 0.08 46.69 3.18
1991 2025 0.103937 CGATCTCCAGTGCCTCTTCC 59.896 60.000 0.00 0.00 0.00 3.46
2000 2034 2.516227 TGAACCTCTCGATCTCCAGT 57.484 50.000 0.00 0.00 0.00 4.00
2546 2583 1.886542 GCCTCCTCGTTGGATTTGTTT 59.113 47.619 0.85 0.00 45.16 2.83
2571 2608 1.859080 GAAACTCTTTGTCAGCGACGT 59.141 47.619 0.00 0.00 34.95 4.34
2690 2727 2.697761 CCCCACGATGTCGAGACGT 61.698 63.158 9.67 5.80 43.02 4.34
2706 2743 0.915364 AGTTCAGATGCCTCCTTCCC 59.085 55.000 0.00 0.00 0.00 3.97
2789 2826 0.725686 CTGCCTTCTCATTGCTGACG 59.274 55.000 0.00 0.00 0.00 4.35
2826 2863 3.764466 CTTGTCTCCGCCGAGCCT 61.764 66.667 0.00 0.00 35.94 4.58
2827 2864 4.821589 CCTTGTCTCCGCCGAGCC 62.822 72.222 0.00 0.00 35.94 4.70
2859 2896 2.739996 CCCTGGCCTCATCGAGCTT 61.740 63.158 3.32 0.00 0.00 3.74
3092 3129 3.118334 CCTCTGATTCCAGCATCTCAACT 60.118 47.826 0.00 0.00 40.20 3.16
3150 3187 7.505585 TGTTTTCTTGAGGTAGTTGGATTCATT 59.494 33.333 0.00 0.00 0.00 2.57
3335 3372 2.749441 GCCTTGAGCTCCTGCACC 60.749 66.667 12.15 0.00 42.74 5.01
3414 3451 0.104855 TGTTCTGCACTCGAGCTTGT 59.895 50.000 13.61 0.00 34.99 3.16
3470 3507 1.699634 TCCTTCTCCTTGGTTGACAGG 59.300 52.381 0.00 0.00 0.00 4.00
3593 3630 2.564062 CACCATTGATTGTTCTGCCCTT 59.436 45.455 0.00 0.00 0.00 3.95
3731 3768 4.690122 CATCCATCAATTTTGAGGCTTCC 58.310 43.478 0.00 0.00 41.08 3.46
3798 3835 0.251354 GACAGCAGATCCTTGAGGCA 59.749 55.000 0.00 0.00 34.44 4.75
3849 3886 0.510359 CGCAGCTCAGTGACTTGAAC 59.490 55.000 3.82 0.00 0.00 3.18
3850 3887 0.601046 CCGCAGCTCAGTGACTTGAA 60.601 55.000 3.82 0.00 0.00 2.69
4172 4209 1.684049 CTCCTCCTTCTCGGCCAGT 60.684 63.158 2.24 0.00 0.00 4.00
4252 4289 4.069232 CCAGCTCGTCGGCCTTCA 62.069 66.667 0.00 0.00 0.00 3.02
4421 4458 1.734137 GAGCGCTTGGACGATCCTA 59.266 57.895 13.26 0.00 42.37 2.94
4570 4610 1.154073 GACTCGGTGTCTACGCCAC 60.154 63.158 12.87 0.00 46.55 5.01
4604 4644 1.338337 TCTTCTCCCTGCGAATCGATC 59.662 52.381 6.91 0.00 0.00 3.69
5038 5080 2.477880 GGTTGCCGAACCGATGAAT 58.522 52.632 0.00 0.00 42.47 2.57
5140 5183 5.968848 GCTACGTAGATATTCTCATAGCTGC 59.031 44.000 26.53 1.21 33.51 5.25
5141 5184 7.078011 TGCTACGTAGATATTCTCATAGCTG 57.922 40.000 26.53 0.00 34.77 4.24
5314 5357 0.538977 GACATGCCATCCCATCCTGG 60.539 60.000 0.00 0.00 37.25 4.45
5316 5359 1.849116 GGACATGCCATCCCATCCT 59.151 57.895 0.00 0.00 36.34 3.24
5317 5360 4.507969 GGACATGCCATCCCATCC 57.492 61.111 0.00 0.00 36.34 3.51
5423 5499 1.873486 GCCAAAAACCATGGACACAGC 60.873 52.381 21.47 10.10 40.56 4.40
5424 5500 1.270252 GGCCAAAAACCATGGACACAG 60.270 52.381 21.47 5.00 45.90 3.66
5426 5502 3.605013 GGCCAAAAACCATGGACAC 57.395 52.632 21.47 0.00 45.90 3.67
5429 5505 0.965439 CGAAGGCCAAAAACCATGGA 59.035 50.000 21.47 0.00 40.56 3.41
5521 5598 2.682352 GTTTGTTTGGCAGCCAACAATT 59.318 40.909 27.40 0.00 43.82 2.32
5537 5614 3.731652 TGCTTGCTTGCTATTGTTTGT 57.268 38.095 3.47 0.00 0.00 2.83
5641 5718 1.801178 GCACCTCCAAAAGAGAACGAG 59.199 52.381 0.00 0.00 46.50 4.18
5695 5772 7.715657 TCATGTGTGTTTTTCTTATGCTTTCT 58.284 30.769 0.00 0.00 0.00 2.52
5890 5968 8.082852 CCAGTAAGCATTAGTTAGATCGTGTAT 58.917 37.037 0.00 0.00 30.21 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.