Multiple sequence alignment - TraesCS1B01G208400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G208400 chr1B 100.000 6724 0 0 1 6724 377970806 377964083 0.000000e+00 12417.0
1 TraesCS1B01G208400 chr1D 93.057 5214 211 50 1 5145 278111454 278106323 0.000000e+00 7483.0
2 TraesCS1B01G208400 chr1D 96.005 1577 40 13 5162 6724 278106246 278104679 0.000000e+00 2542.0
3 TraesCS1B01G208400 chr1A 92.962 5186 218 43 1 5145 350401876 350396797 0.000000e+00 7419.0
4 TraesCS1B01G208400 chr1A 94.894 1508 43 11 5227 6724 350396679 350395196 0.000000e+00 2327.0
5 TraesCS1B01G208400 chr1A 100.000 41 0 0 5162 5202 350396720 350396680 7.230000e-10 76.8
6 TraesCS1B01G208400 chr3D 81.092 513 53 17 2377 2882 178587878 178587403 2.960000e-98 370.0
7 TraesCS1B01G208400 chr3B 81.585 429 53 12 2454 2882 228502180 228502582 1.400000e-86 331.0
8 TraesCS1B01G208400 chr5D 82.418 364 46 9 2520 2882 404857949 404858295 1.100000e-77 302.0
9 TraesCS1B01G208400 chr6D 89.431 123 13 0 1652 1774 413272373 413272251 9.030000e-34 156.0
10 TraesCS1B01G208400 chr6D 85.366 123 14 4 1654 1774 335068116 335067996 2.550000e-24 124.0
11 TraesCS1B01G208400 chr6A 89.431 123 13 0 1652 1774 558788606 558788484 9.030000e-34 156.0
12 TraesCS1B01G208400 chr6A 85.246 122 16 2 1654 1774 474333558 474333438 2.550000e-24 124.0
13 TraesCS1B01G208400 chr6B 86.290 124 17 0 1651 1774 623084110 623083987 1.180000e-27 135.0
14 TraesCS1B01G208400 chr6B 84.615 130 14 6 1648 1774 485537656 485537782 2.550000e-24 124.0
15 TraesCS1B01G208400 chr5A 94.118 85 1 2 6644 6724 34869439 34869355 7.080000e-25 126.0
16 TraesCS1B01G208400 chr7D 83.871 124 18 2 1652 1774 119568768 119568646 4.260000e-22 117.0
17 TraesCS1B01G208400 chr7A 91.304 69 6 0 2365 2433 76286057 76285989 2.000000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G208400 chr1B 377964083 377970806 6723 True 12417.000000 12417 100.000 1 6724 1 chr1B.!!$R1 6723
1 TraesCS1B01G208400 chr1D 278104679 278111454 6775 True 5012.500000 7483 94.531 1 6724 2 chr1D.!!$R1 6723
2 TraesCS1B01G208400 chr1A 350395196 350401876 6680 True 3274.266667 7419 95.952 1 6724 3 chr1A.!!$R1 6723

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
773 799 0.329596 GCTTTCACCCACCCATCTCT 59.670 55.0 0.00 0.00 0.00 3.10 F
1289 1323 0.174617 CTCAGAAAGAGGAGGGCGTC 59.825 60.0 0.00 0.00 40.84 5.19 F
2231 2268 0.038618 TGGACCTCGACATGAACGTG 60.039 55.0 0.00 5.97 0.00 4.49 F
3111 3149 0.107752 GCTTCCAGGAGGAGCTTCTG 60.108 60.0 0.00 0.00 46.74 3.02 F
3112 3150 0.107752 CTTCCAGGAGGAGCTTCTGC 60.108 60.0 5.13 5.13 46.74 4.26 F
4556 4638 0.603065 GGCCACAAATTCGCTCCTTT 59.397 50.0 0.00 0.00 0.00 3.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2036 2070 0.586802 GCCCGTGTGAAGAACAACTC 59.413 55.000 0.00 0.00 41.57 3.01 R
2948 2986 0.043907 CATGCGTACGTTCATCAGCG 60.044 55.000 17.90 0.00 0.00 5.18 R
3232 3270 0.107410 ATGCATGCATTGGGCCTTTG 60.107 50.000 27.46 3.23 43.89 2.77 R
4920 5023 0.679002 GATGCATGTGACCAGCCTGT 60.679 55.000 2.46 0.00 0.00 4.00 R
4962 5065 6.622896 GCCAGCACATAAACGAATCTAAAAGT 60.623 38.462 0.00 0.00 0.00 2.66 R
6036 6211 0.413037 ATGACCAAAATGCCCTGGGA 59.587 50.000 19.27 1.59 37.00 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 1.163554 GAGTCAGTCCGTCCGTTACT 58.836 55.000 0.00 0.00 0.00 2.24
104 105 4.011517 GAGGCGGTGGGACGGAAA 62.012 66.667 0.00 0.00 0.00 3.13
105 106 3.952628 GAGGCGGTGGGACGGAAAG 62.953 68.421 0.00 0.00 0.00 2.62
106 107 4.011517 GGCGGTGGGACGGAAAGA 62.012 66.667 0.00 0.00 0.00 2.52
107 108 2.741211 GCGGTGGGACGGAAAGAC 60.741 66.667 0.00 0.00 0.00 3.01
108 109 2.431942 CGGTGGGACGGAAAGACG 60.432 66.667 0.00 0.00 40.31 4.18
109 110 2.047560 GGTGGGACGGAAAGACGG 60.048 66.667 0.00 0.00 38.39 4.79
110 111 2.047560 GTGGGACGGAAAGACGGG 60.048 66.667 0.00 0.00 38.39 5.28
111 112 4.011517 TGGGACGGAAAGACGGGC 62.012 66.667 0.00 0.00 38.39 6.13
277 299 2.781595 TTTTCACGCCTCCGCCTCTC 62.782 60.000 0.00 0.00 38.22 3.20
414 438 4.577677 TTCAACGCTGGGGCTGCA 62.578 61.111 0.50 0.00 36.09 4.41
482 508 5.767665 TGTTCTTTGCTATTAGGTCAAAGCA 59.232 36.000 14.26 5.86 43.64 3.91
610 636 1.018148 GAGAGATCGAGCCGAGTTCA 58.982 55.000 0.00 0.00 39.91 3.18
773 799 0.329596 GCTTTCACCCACCCATCTCT 59.670 55.000 0.00 0.00 0.00 3.10
861 887 2.682494 GTACCACCGCCCTCTCCA 60.682 66.667 0.00 0.00 0.00 3.86
967 993 1.215647 CTTCTCCTTGGTCGGTCGG 59.784 63.158 0.00 0.00 0.00 4.79
968 994 1.532316 TTCTCCTTGGTCGGTCGGT 60.532 57.895 0.00 0.00 0.00 4.69
969 995 1.530013 TTCTCCTTGGTCGGTCGGTC 61.530 60.000 0.00 0.00 0.00 4.79
970 996 3.338126 CTCCTTGGTCGGTCGGTCG 62.338 68.421 0.00 0.00 0.00 4.79
1211 1237 2.158449 CGTCTTCATCTTGTCTGTTGCC 59.842 50.000 0.00 0.00 0.00 4.52
1213 1239 3.188048 GTCTTCATCTTGTCTGTTGCCTG 59.812 47.826 0.00 0.00 0.00 4.85
1214 1240 1.527034 TCATCTTGTCTGTTGCCTGC 58.473 50.000 0.00 0.00 0.00 4.85
1215 1241 1.202794 TCATCTTGTCTGTTGCCTGCA 60.203 47.619 0.00 0.00 0.00 4.41
1216 1250 1.816835 CATCTTGTCTGTTGCCTGCAT 59.183 47.619 0.00 0.00 0.00 3.96
1263 1297 1.220529 GTTTCTTTTTGCTGCTGGGC 58.779 50.000 0.00 0.00 0.00 5.36
1267 1301 0.319297 CTTTTTGCTGCTGGGCTGTC 60.319 55.000 0.00 0.00 0.00 3.51
1270 1304 1.174712 TTTGCTGCTGGGCTGTCTTC 61.175 55.000 0.00 0.00 0.00 2.87
1289 1323 0.174617 CTCAGAAAGAGGAGGGCGTC 59.825 60.000 0.00 0.00 40.84 5.19
1295 1329 4.554036 GAGGAGGGCGTCATGGGC 62.554 72.222 9.66 0.00 0.00 5.36
1396 1430 2.259818 CGGTCTGCTCAGCTTCGT 59.740 61.111 0.00 0.00 0.00 3.85
1535 1569 2.184322 CGCTACCATCGCCACACT 59.816 61.111 0.00 0.00 0.00 3.55
1596 1630 6.653989 AGAACCAAACCTCGATCTTAATGAT 58.346 36.000 0.00 0.00 38.27 2.45
1817 1851 3.227276 ATCCTCCGCGCCGAGAAT 61.227 61.111 24.59 9.50 30.97 2.40
1823 1857 2.202610 CGCGCCGAGAATGAGTCA 60.203 61.111 0.00 0.00 0.00 3.41
1907 1941 2.824041 GCCGCCGTCATTGGTGAT 60.824 61.111 0.00 0.00 42.25 3.06
2036 2070 9.647679 CTAGTGTTACTGTAATGTACTACATCG 57.352 37.037 3.23 0.10 37.97 3.84
2069 2103 1.134753 CACGGGCTAATGGTGTACGTA 59.865 52.381 0.00 0.00 0.00 3.57
2070 2104 1.134946 ACGGGCTAATGGTGTACGTAC 59.865 52.381 18.90 18.90 0.00 3.67
2071 2105 1.843992 GGGCTAATGGTGTACGTACG 58.156 55.000 20.18 15.01 0.00 3.67
2072 2106 1.134946 GGGCTAATGGTGTACGTACGT 59.865 52.381 25.98 25.98 0.00 3.57
2073 2107 2.187707 GGCTAATGGTGTACGTACGTG 58.812 52.381 30.25 11.42 0.00 4.49
2231 2268 0.038618 TGGACCTCGACATGAACGTG 60.039 55.000 0.00 5.97 0.00 4.49
2311 2348 3.818787 GCCGCAACAGATGGCCAG 61.819 66.667 13.05 0.00 43.06 4.85
2444 2481 2.354103 CGACCACCTCATCAAGATGTGT 60.354 50.000 9.66 6.16 40.14 3.72
2732 2770 2.092291 CCATTGCGCACGTACGTCT 61.092 57.895 19.94 0.00 34.88 4.18
2901 2939 3.109151 ACCCCATTTACTACCACATCGA 58.891 45.455 0.00 0.00 0.00 3.59
2904 2942 4.755123 CCCCATTTACTACCACATCGATTC 59.245 45.833 0.00 0.00 0.00 2.52
2906 2944 5.466728 CCCATTTACTACCACATCGATTCAG 59.533 44.000 0.00 0.00 0.00 3.02
2908 2946 5.925506 TTTACTACCACATCGATTCAGGA 57.074 39.130 12.99 0.00 0.00 3.86
2909 2947 5.515797 TTACTACCACATCGATTCAGGAG 57.484 43.478 12.99 5.49 0.00 3.69
2933 2971 4.588805 GATGCATGCATCGATCGATTTA 57.411 40.909 37.33 18.87 42.55 1.40
2935 2973 3.652274 TGCATGCATCGATCGATTTAGA 58.348 40.909 27.45 12.00 31.62 2.10
2948 2986 7.010183 TCGATCGATTTAGAAGTTGATTGGTTC 59.990 37.037 15.15 0.00 0.00 3.62
3011 3049 0.681564 CTGTCTCCTCTAGTGCCGGT 60.682 60.000 1.90 0.00 0.00 5.28
3015 3053 3.449227 CCTCTAGTGCCGGTGCGA 61.449 66.667 1.90 0.00 41.78 5.10
3057 3095 4.059459 GTGCACAACGCCGACGAG 62.059 66.667 13.17 0.00 43.93 4.18
3087 3125 1.874019 CATCGTCGACTTCCCAGCG 60.874 63.158 14.70 0.00 0.00 5.18
3111 3149 0.107752 GCTTCCAGGAGGAGCTTCTG 60.108 60.000 0.00 0.00 46.74 3.02
3112 3150 0.107752 CTTCCAGGAGGAGCTTCTGC 60.108 60.000 5.13 5.13 46.74 4.26
3113 3151 0.837691 TTCCAGGAGGAGCTTCTGCA 60.838 55.000 16.84 0.00 46.74 4.41
3114 3152 1.221293 CCAGGAGGAGCTTCTGCAG 59.779 63.158 16.84 7.63 42.74 4.41
3274 3312 1.576451 GCATGTGTGACGTGGCATGA 61.576 55.000 14.82 0.00 40.61 3.07
3548 3620 0.887836 TGCCTTCACTCTGCTGCTTG 60.888 55.000 0.00 0.00 0.00 4.01
3587 3659 4.143543 TGTTCATCCTGCTTGTGAATTGA 58.856 39.130 0.00 0.00 34.71 2.57
3593 3665 2.159282 CCTGCTTGTGAATTGAGATGCC 60.159 50.000 0.00 0.00 0.00 4.40
3596 3668 2.223203 GCTTGTGAATTGAGATGCCGAG 60.223 50.000 0.00 0.00 0.00 4.63
3604 3676 5.770162 TGAATTGAGATGCCGAGTCTAGATA 59.230 40.000 0.00 0.00 0.00 1.98
3605 3677 6.435591 TGAATTGAGATGCCGAGTCTAGATAT 59.564 38.462 0.00 0.00 0.00 1.63
3606 3678 5.888691 TTGAGATGCCGAGTCTAGATATC 57.111 43.478 0.00 0.00 0.00 1.63
3616 3690 4.395542 CGAGTCTAGATATCCCTAAACCGG 59.604 50.000 0.00 0.00 0.00 5.28
3622 3696 4.158015 AGATATCCCTAAACCGGTCGATT 58.842 43.478 8.04 0.13 0.00 3.34
3634 3708 1.864711 CGGTCGATTTCGCCATGTATT 59.135 47.619 11.87 0.00 39.60 1.89
3645 3719 3.814842 TCGCCATGTATTTCTATGCTTGG 59.185 43.478 0.00 0.00 41.57 3.61
3647 3721 4.036734 CGCCATGTATTTCTATGCTTGGTT 59.963 41.667 0.00 0.00 41.08 3.67
3649 3723 6.340522 GCCATGTATTTCTATGCTTGGTTTT 58.659 36.000 0.00 0.00 41.08 2.43
3650 3724 6.256321 GCCATGTATTTCTATGCTTGGTTTTG 59.744 38.462 0.00 0.00 41.08 2.44
3651 3725 7.322664 CCATGTATTTCTATGCTTGGTTTTGT 58.677 34.615 0.00 0.00 37.10 2.83
3652 3726 7.276218 CCATGTATTTCTATGCTTGGTTTTGTG 59.724 37.037 0.00 0.00 37.10 3.33
3653 3727 6.686630 TGTATTTCTATGCTTGGTTTTGTGG 58.313 36.000 0.00 0.00 0.00 4.17
3654 3728 6.491745 TGTATTTCTATGCTTGGTTTTGTGGA 59.508 34.615 0.00 0.00 0.00 4.02
3662 3736 3.243068 GCTTGGTTTTGTGGAGTACTGTG 60.243 47.826 0.00 0.00 0.00 3.66
3663 3737 3.916359 TGGTTTTGTGGAGTACTGTGA 57.084 42.857 0.00 0.00 0.00 3.58
3678 3752 0.895100 TGTGATGGTTCTTGCCTGCC 60.895 55.000 0.00 0.00 0.00 4.85
3698 3772 1.853319 GCCTGTCAAGTGTTCGACG 59.147 57.895 0.00 0.00 34.78 5.12
3701 3775 1.931172 CCTGTCAAGTGTTCGACGTTT 59.069 47.619 0.00 0.00 34.78 3.60
3740 3814 7.196331 CAGTGCTTAGTTGCTTCTTTAAAACT 58.804 34.615 0.00 0.00 36.80 2.66
3790 3864 8.080417 TCGTATTATTTGGAAGGAAGATCGTAG 58.920 37.037 0.00 0.00 0.00 3.51
3845 3922 1.802960 ACTCGAGTGCTGCAATTTCAG 59.197 47.619 19.30 0.18 37.15 3.02
3896 3974 9.492973 GGTTGTACTTACCACTTTTATCAGTTA 57.507 33.333 11.44 0.00 35.67 2.24
4017 4095 6.317140 GGACAAATATGATGAAGCTGTCTCAA 59.683 38.462 0.00 0.00 33.77 3.02
4092 4170 2.226912 GACGGCGCTATCTGATTCTACT 59.773 50.000 6.90 0.00 0.00 2.57
4095 4173 3.304726 CGGCGCTATCTGATTCTACTGAA 60.305 47.826 7.64 0.00 36.54 3.02
4105 4183 5.184096 TCTGATTCTACTGAAGACACAGTCC 59.816 44.000 4.63 0.00 46.36 3.85
4134 4212 4.202461 ACAACAAGGAAGAATACTGAGCCA 60.202 41.667 0.00 0.00 0.00 4.75
4249 4327 4.427394 GCTGTCAGGTAGCGATGG 57.573 61.111 1.14 0.00 0.00 3.51
4259 4337 6.150641 TGTCAGGTAGCGATGGTCTATATTAC 59.849 42.308 0.00 0.00 0.00 1.89
4303 4385 8.895737 TCGTTGTTAGTTTTGGTTATCTTCTTT 58.104 29.630 0.00 0.00 0.00 2.52
4377 4459 3.968649 TGCAGCTTGAGATTTTGTCAAC 58.031 40.909 0.00 0.00 30.69 3.18
4378 4460 3.633525 TGCAGCTTGAGATTTTGTCAACT 59.366 39.130 0.00 0.00 30.69 3.16
4432 4514 2.514458 ATGGATCACACCCAAGGAAC 57.486 50.000 0.00 0.00 37.22 3.62
4482 4564 0.966920 ACTCTTTCCGGTCGTCACAT 59.033 50.000 0.00 0.00 0.00 3.21
4498 4580 3.693085 GTCACATGTTCTGAATGCTGGAT 59.307 43.478 0.00 0.00 0.00 3.41
4523 4605 8.880878 TTTCCTTTGTACTTGAATAAAAAGCC 57.119 30.769 0.00 0.00 30.72 4.35
4556 4638 0.603065 GGCCACAAATTCGCTCCTTT 59.397 50.000 0.00 0.00 0.00 3.11
4560 4642 1.067635 CACAAATTCGCTCCTTTGGGG 60.068 52.381 0.00 0.00 36.81 4.96
4573 4655 4.599041 TCCTTTGGGGACACTCAATAATG 58.401 43.478 0.00 0.00 42.67 1.90
4603 4685 9.326413 CTCTTTCTTTGGTAACTAGAACTTCAA 57.674 33.333 0.00 0.00 37.57 2.69
4624 4706 7.891498 TCAAGTGTACTTAGTATCTATGCCA 57.109 36.000 0.00 0.00 34.28 4.92
4645 4727 8.270080 TGCCAAACGAGTATAATCACAATTTA 57.730 30.769 0.58 0.00 0.00 1.40
4660 4742 9.699410 AATCACAATTTATCACCTCCTAAATCA 57.301 29.630 0.00 0.00 29.54 2.57
4681 4766 6.471233 TCATACTGACCATGTAGAGGAAAG 57.529 41.667 0.00 0.00 0.00 2.62
4687 4772 7.957002 ACTGACCATGTAGAGGAAAGTATATG 58.043 38.462 0.00 0.00 0.00 1.78
4920 5023 2.169561 TGATATTTGTGCGGTCTAGGCA 59.830 45.455 0.00 0.00 38.25 4.75
4952 5055 4.460034 TCACATGCATCACTGTAATTTGCT 59.540 37.500 0.00 0.00 34.47 3.91
4953 5056 5.647225 TCACATGCATCACTGTAATTTGCTA 59.353 36.000 0.00 0.00 34.47 3.49
4954 5057 5.969435 CACATGCATCACTGTAATTTGCTAG 59.031 40.000 0.00 0.00 34.47 3.42
4962 5065 9.891828 CATCACTGTAATTTGCTAGTACAAAAA 57.108 29.630 0.00 0.00 42.45 1.94
4994 5097 2.450160 GTTTATGTGCTGGCATTACGC 58.550 47.619 0.00 0.00 41.28 4.42
5000 5103 1.020861 TGCTGGCATTACGCTCACAG 61.021 55.000 0.00 0.00 41.91 3.66
5045 5148 9.236006 AGAGCTTTTAGATGCAAAGAAAATAGA 57.764 29.630 0.00 0.00 33.69 1.98
5135 5238 3.758023 TGATGTACTGCCTTTCCATGTTG 59.242 43.478 0.00 0.00 0.00 3.33
5136 5239 1.885887 TGTACTGCCTTTCCATGTTGC 59.114 47.619 0.00 0.00 0.00 4.17
5137 5240 1.885887 GTACTGCCTTTCCATGTTGCA 59.114 47.619 0.00 0.00 0.00 4.08
5139 5242 1.972795 ACTGCCTTTCCATGTTGCAAT 59.027 42.857 0.59 0.00 0.00 3.56
5141 5244 3.181452 ACTGCCTTTCCATGTTGCAATTT 60.181 39.130 0.59 0.00 0.00 1.82
5142 5245 3.139850 TGCCTTTCCATGTTGCAATTTG 58.860 40.909 0.59 3.37 0.00 2.32
5143 5246 3.181457 TGCCTTTCCATGTTGCAATTTGA 60.181 39.130 0.59 0.00 0.00 2.69
5144 5247 4.004982 GCCTTTCCATGTTGCAATTTGAT 58.995 39.130 0.59 0.00 0.00 2.57
5145 5248 4.142773 GCCTTTCCATGTTGCAATTTGATG 60.143 41.667 0.59 3.24 0.00 3.07
5147 5250 6.164876 CCTTTCCATGTTGCAATTTGATGTA 58.835 36.000 0.59 0.00 0.00 2.29
5148 5251 6.091169 CCTTTCCATGTTGCAATTTGATGTAC 59.909 38.462 0.59 0.00 0.00 2.90
5149 5252 5.981088 TCCATGTTGCAATTTGATGTACT 57.019 34.783 0.59 0.00 0.00 2.73
5150 5253 5.712004 TCCATGTTGCAATTTGATGTACTG 58.288 37.500 0.59 0.00 0.00 2.74
5151 5254 4.327898 CCATGTTGCAATTTGATGTACTGC 59.672 41.667 0.59 0.00 0.00 4.40
5152 5255 3.911868 TGTTGCAATTTGATGTACTGCC 58.088 40.909 0.59 0.00 31.92 4.85
5154 5257 4.039004 TGTTGCAATTTGATGTACTGCCTT 59.961 37.500 0.59 0.00 31.92 4.35
5156 5259 4.808558 TGCAATTTGATGTACTGCCTTTC 58.191 39.130 0.00 0.00 31.92 2.62
5157 5260 4.176271 GCAATTTGATGTACTGCCTTTCC 58.824 43.478 0.00 0.00 0.00 3.13
5158 5261 4.321899 GCAATTTGATGTACTGCCTTTCCA 60.322 41.667 0.00 0.00 0.00 3.53
5202 5366 9.141400 GTACTCCTTGTAAGATCAACTAAGTTG 57.859 37.037 0.00 0.00 37.59 3.16
5260 5431 6.645790 AAATGTTGAGAGCTGACATTTCTT 57.354 33.333 15.69 2.20 45.70 2.52
5262 5433 4.067896 TGTTGAGAGCTGACATTTCTTCC 58.932 43.478 0.00 0.00 0.00 3.46
5266 5437 4.528206 TGAGAGCTGACATTTCTTCCACTA 59.472 41.667 0.00 0.00 0.00 2.74
5357 5528 0.844661 ATGGTGGAAGCCTGGTGGTA 60.845 55.000 0.00 0.00 35.27 3.25
5480 5651 4.785453 CCTTCGCCTGGAGCCACC 62.785 72.222 0.00 0.00 38.78 4.61
5538 5709 4.923942 ATGCAGATGAGCCCGCCG 62.924 66.667 0.00 0.00 0.00 6.46
5730 5901 1.272769 GTTCCGACCAGTAGCAAGAGT 59.727 52.381 0.00 0.00 0.00 3.24
5731 5902 1.174783 TCCGACCAGTAGCAAGAGTC 58.825 55.000 0.00 0.00 0.00 3.36
5806 5977 1.160137 CACCTGCTAACACCTCAAGC 58.840 55.000 0.00 0.00 36.77 4.01
5820 5991 2.618816 CCTCAAGCATCCCTGTTAGCAA 60.619 50.000 0.00 0.00 0.00 3.91
5822 5993 2.161855 CAAGCATCCCTGTTAGCAACA 58.838 47.619 2.49 2.49 39.52 3.33
5826 5997 2.875672 GCATCCCTGTTAGCAACACAGA 60.876 50.000 10.62 5.52 43.90 3.41
5846 6017 2.205022 TGCAAGGGAGGATTTGACAG 57.795 50.000 0.00 0.00 0.00 3.51
5979 6152 1.678728 GGCAACGTGATCCATCTCCAA 60.679 52.381 0.00 0.00 0.00 3.53
6036 6211 2.233271 CCAACACCAACAGAATCAGCT 58.767 47.619 0.00 0.00 0.00 4.24
6037 6212 2.227388 CCAACACCAACAGAATCAGCTC 59.773 50.000 0.00 0.00 0.00 4.09
6171 6346 5.121768 ACTTAATTAGTTTGAGCGTGCGATT 59.878 36.000 0.00 0.00 31.29 3.34
6175 6350 0.516524 GTTTGAGCGTGCGATTCGTC 60.517 55.000 8.03 0.94 0.00 4.20
6218 6393 6.039270 ACTTGTTTAAAGCAGACTGTAATGCA 59.961 34.615 16.82 0.00 45.01 3.96
6223 6398 5.772825 AAAGCAGACTGTAATGCAAAAGA 57.227 34.783 16.82 0.00 45.01 2.52
6235 6410 6.942005 TGTAATGCAAAAGAGAAGATGAAGGA 59.058 34.615 0.00 0.00 0.00 3.36
6236 6411 6.906157 AATGCAAAAGAGAAGATGAAGGAA 57.094 33.333 0.00 0.00 0.00 3.36
6237 6412 5.954296 TGCAAAAGAGAAGATGAAGGAAG 57.046 39.130 0.00 0.00 0.00 3.46
6352 6527 3.740832 GCCTTGTCTGTAAAACATTTGGC 59.259 43.478 0.00 0.00 33.80 4.52
6354 6529 5.600696 CCTTGTCTGTAAAACATTTGGCTT 58.399 37.500 0.00 0.00 0.00 4.35
6386 6564 9.480053 TTGTTACTGTGTTATTGGTACTTCTAC 57.520 33.333 0.00 0.00 0.00 2.59
6484 6662 4.018609 CGTGAGCCTAATCTGCGG 57.981 61.111 0.00 0.00 0.00 5.69
6505 6684 1.078918 GGCTTTGAATGCCTTGCCC 60.079 57.895 14.17 0.00 46.38 5.36
6506 6685 1.672898 GCTTTGAATGCCTTGCCCA 59.327 52.632 0.00 0.00 0.00 5.36
6507 6686 0.251073 GCTTTGAATGCCTTGCCCAT 59.749 50.000 0.00 0.00 0.00 4.00
6508 6687 1.741394 GCTTTGAATGCCTTGCCCATC 60.741 52.381 0.00 0.00 0.00 3.51
6509 6688 1.829222 CTTTGAATGCCTTGCCCATCT 59.171 47.619 0.00 0.00 0.00 2.90
6510 6689 2.824689 TTGAATGCCTTGCCCATCTA 57.175 45.000 0.00 0.00 0.00 1.98
6534 6713 3.697542 TGCATTGGATCCATTGTCTTCAG 59.302 43.478 28.62 9.94 32.01 3.02
6545 6724 1.374758 GTCTTCAGTGGTGGCCTCG 60.375 63.158 3.32 0.00 0.00 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 0.879765 CAGTAACGGACGGACTGACT 59.120 55.000 18.37 2.89 42.65 3.41
62 63 1.177256 AGCACAGTAACGGACGGACT 61.177 55.000 0.00 0.00 0.00 3.85
64 65 1.174078 TGAGCACAGTAACGGACGGA 61.174 55.000 0.00 0.00 0.00 4.69
99 100 4.692475 AACCCGCCCGTCTTTCCG 62.692 66.667 0.00 0.00 0.00 4.30
100 101 2.745100 GAACCCGCCCGTCTTTCC 60.745 66.667 0.00 0.00 0.00 3.13
101 102 2.031465 TGAACCCGCCCGTCTTTC 59.969 61.111 0.00 0.00 0.00 2.62
102 103 2.281276 GTGAACCCGCCCGTCTTT 60.281 61.111 0.00 0.00 0.00 2.52
103 104 4.675029 CGTGAACCCGCCCGTCTT 62.675 66.667 0.00 0.00 0.00 3.01
142 160 4.029186 ACAGTAACGGACGCGCGA 62.029 61.111 39.36 10.31 0.00 5.87
146 164 4.130281 GCGCACAGTAACGGACGC 62.130 66.667 0.30 0.00 39.49 5.19
404 428 2.359602 CTGACAGTGCAGCCCCAG 60.360 66.667 0.00 0.00 0.00 4.45
482 508 3.003763 GACTCCACGCCCCCTCTT 61.004 66.667 0.00 0.00 0.00 2.85
594 620 1.686355 AGATGAACTCGGCTCGATCT 58.314 50.000 0.00 0.00 34.61 2.75
719 745 2.039879 ACAAGGAGAAGTAAATGGCGGT 59.960 45.455 0.00 0.00 0.00 5.68
773 799 1.093408 TGGAGGAGGAAGAGGAGGAA 58.907 55.000 0.00 0.00 0.00 3.36
861 887 2.625790 GAGGACGAAGCATGGTAGAGAT 59.374 50.000 0.00 0.00 0.00 2.75
967 993 1.021390 TAACTCCTCGACCGACCGAC 61.021 60.000 0.00 0.00 34.56 4.79
968 994 0.321564 TTAACTCCTCGACCGACCGA 60.322 55.000 0.00 0.00 37.03 4.69
969 995 0.098376 CTTAACTCCTCGACCGACCG 59.902 60.000 0.00 0.00 0.00 4.79
970 996 0.455005 CCTTAACTCCTCGACCGACC 59.545 60.000 0.00 0.00 0.00 4.79
1263 1297 3.195396 CCCTCCTCTTTCTGAGAAGACAG 59.805 52.174 0.00 0.00 45.39 3.51
1267 1301 1.134848 CGCCCTCCTCTTTCTGAGAAG 60.135 57.143 0.00 0.00 45.39 2.85
1270 1304 0.174617 GACGCCCTCCTCTTTCTGAG 59.825 60.000 0.00 0.00 42.30 3.35
1289 1323 2.440796 ATGTGAAGCCCGCCCATG 60.441 61.111 0.00 0.00 0.00 3.66
1295 1329 1.213537 CTTTGCCATGTGAAGCCCG 59.786 57.895 0.00 0.00 0.00 6.13
1310 1344 0.685660 GGTCCAACTCCTCGTCCTTT 59.314 55.000 0.00 0.00 0.00 3.11
1459 1493 4.640690 ACGAGGAGGGGTGGTGCT 62.641 66.667 0.00 0.00 0.00 4.40
1460 1494 4.083862 GACGAGGAGGGGTGGTGC 62.084 72.222 0.00 0.00 0.00 5.01
1496 1530 0.601841 TCTTCTTCCCGTTGCCGTTC 60.602 55.000 0.00 0.00 0.00 3.95
1508 1542 1.855360 CGATGGTAGCGCTTCTTCTTC 59.145 52.381 18.68 9.59 0.00 2.87
1535 1569 3.963687 CTGCTGGATCTGGTGCGCA 62.964 63.158 5.66 5.66 0.00 6.09
1620 1654 1.300156 ATACGCGCGCATCAGTCAT 60.300 52.632 32.58 9.66 0.00 3.06
1817 1851 3.701542 AGTTGTCTGTCTTGAGTGACTCA 59.298 43.478 11.93 11.93 38.87 3.41
1823 1857 2.288273 GCGGTAGTTGTCTGTCTTGAGT 60.288 50.000 0.00 0.00 0.00 3.41
1907 1941 2.950309 GTTCTGCTCCTCGTAGGACATA 59.050 50.000 0.11 0.00 40.06 2.29
2036 2070 0.586802 GCCCGTGTGAAGAACAACTC 59.413 55.000 0.00 0.00 41.57 3.01
2069 2103 4.287967 CCGACGCGCAAAACACGT 62.288 61.111 5.73 0.00 43.83 4.49
2070 2104 3.289816 ATCCGACGCGCAAAACACG 62.290 57.895 5.73 3.07 0.00 4.49
2071 2105 1.792057 CATCCGACGCGCAAAACAC 60.792 57.895 5.73 0.00 0.00 3.32
2072 2106 2.553770 CATCCGACGCGCAAAACA 59.446 55.556 5.73 0.00 0.00 2.83
2073 2107 2.202298 CCATCCGACGCGCAAAAC 60.202 61.111 5.73 0.00 0.00 2.43
2231 2268 2.508663 GCGAAGTGCCGGGAGTAC 60.509 66.667 2.72 0.00 37.76 2.73
2369 2406 2.117423 TCCTGCTCCTGGACGACA 59.883 61.111 0.00 0.00 0.00 4.35
2588 2625 2.125912 CGCGTCCCTTCAGTCCTG 60.126 66.667 0.00 0.00 0.00 3.86
2732 2770 3.531538 GCGGGTGATCTCAAGTTAATCA 58.468 45.455 0.00 0.00 0.00 2.57
2901 2939 3.851458 TGCATGCATCTACTCCTGAAT 57.149 42.857 18.46 0.00 0.00 2.57
2933 2971 3.126001 TCAGCGAACCAATCAACTTCT 57.874 42.857 0.00 0.00 0.00 2.85
2935 2973 3.411446 TCATCAGCGAACCAATCAACTT 58.589 40.909 0.00 0.00 0.00 2.66
2948 2986 0.043907 CATGCGTACGTTCATCAGCG 60.044 55.000 17.90 0.00 0.00 5.18
3011 3049 0.603569 GAAGAAGACCACCTCTCGCA 59.396 55.000 0.00 0.00 0.00 5.10
3015 3053 0.178929 ACCGGAAGAAGACCACCTCT 60.179 55.000 9.46 0.00 0.00 3.69
3057 3095 3.682292 GACGATGGACCAGGTGCCC 62.682 68.421 8.93 0.00 0.00 5.36
3226 3264 1.387737 CATTGGGCCTTTGGAGGGA 59.612 57.895 4.53 0.00 43.75 4.20
3230 3268 1.901654 GCATGCATTGGGCCTTTGGA 61.902 55.000 14.21 3.79 43.89 3.53
3232 3270 0.107410 ATGCATGCATTGGGCCTTTG 60.107 50.000 27.46 3.23 43.89 2.77
3274 3312 0.910338 AGAGCTCAGTCCATGCATGT 59.090 50.000 24.58 4.09 0.00 3.21
3558 3630 3.376234 ACAAGCAGGATGAACATCAATCG 59.624 43.478 15.22 3.36 39.69 3.34
3567 3639 4.654915 TCTCAATTCACAAGCAGGATGAA 58.345 39.130 0.00 0.00 39.69 2.57
3587 3659 3.268334 AGGGATATCTAGACTCGGCATCT 59.732 47.826 2.05 0.00 0.00 2.90
3593 3665 4.395542 CCGGTTTAGGGATATCTAGACTCG 59.604 50.000 2.05 0.21 0.00 4.18
3596 3668 4.155644 CGACCGGTTTAGGGATATCTAGAC 59.844 50.000 9.42 0.00 35.02 2.59
3604 3676 2.482490 CGAAATCGACCGGTTTAGGGAT 60.482 50.000 9.42 4.37 43.02 3.85
3605 3677 1.135024 CGAAATCGACCGGTTTAGGGA 60.135 52.381 9.42 1.83 43.02 4.20
3606 3678 1.283736 CGAAATCGACCGGTTTAGGG 58.716 55.000 9.42 0.00 43.02 3.53
3622 3696 4.275689 CCAAGCATAGAAATACATGGCGAA 59.724 41.667 0.00 0.00 0.00 4.70
3634 3708 4.469657 ACTCCACAAAACCAAGCATAGAA 58.530 39.130 0.00 0.00 0.00 2.10
3645 3719 4.134563 ACCATCACAGTACTCCACAAAAC 58.865 43.478 0.00 0.00 0.00 2.43
3647 3721 4.102524 AGAACCATCACAGTACTCCACAAA 59.897 41.667 0.00 0.00 0.00 2.83
3649 3723 3.239449 AGAACCATCACAGTACTCCACA 58.761 45.455 0.00 0.00 0.00 4.17
3650 3724 3.963428 AGAACCATCACAGTACTCCAC 57.037 47.619 0.00 0.00 0.00 4.02
3651 3725 3.557054 GCAAGAACCATCACAGTACTCCA 60.557 47.826 0.00 0.00 0.00 3.86
3652 3726 3.003480 GCAAGAACCATCACAGTACTCC 58.997 50.000 0.00 0.00 0.00 3.85
3653 3727 3.003480 GGCAAGAACCATCACAGTACTC 58.997 50.000 0.00 0.00 0.00 2.59
3654 3728 2.639839 AGGCAAGAACCATCACAGTACT 59.360 45.455 0.00 0.00 0.00 2.73
3662 3736 2.409870 CGGGCAGGCAAGAACCATC 61.410 63.158 0.00 0.00 0.00 3.51
3663 3737 2.361610 CGGGCAGGCAAGAACCAT 60.362 61.111 0.00 0.00 0.00 3.55
3678 3752 1.300620 TCGAACACTTGACAGGCGG 60.301 57.895 0.00 0.00 0.00 6.13
3717 3791 8.126700 TGTAGTTTTAAAGAAGCAACTAAGCAC 58.873 33.333 0.00 0.00 34.34 4.40
3740 3814 7.224557 CGATGATGACACATAAAAGGACATGTA 59.775 37.037 0.00 0.00 33.66 2.29
3753 3827 8.675705 TTCCAAATAATACGATGATGACACAT 57.324 30.769 0.00 0.00 0.00 3.21
3755 3829 7.441157 TCCTTCCAAATAATACGATGATGACAC 59.559 37.037 0.00 0.00 0.00 3.67
3774 3848 5.808366 ATATTGCTACGATCTTCCTTCCA 57.192 39.130 0.00 0.00 0.00 3.53
3790 3864 6.539649 AACGACCATGTACACATATATTGC 57.460 37.500 0.00 0.00 34.26 3.56
3845 3922 4.336713 GTGTAAAGATCCCAAGAGAATGGC 59.663 45.833 0.00 0.00 39.26 4.40
3846 3923 5.587844 CAGTGTAAAGATCCCAAGAGAATGG 59.412 44.000 0.00 0.00 40.35 3.16
3896 3974 6.959639 AAATATCGATAAAACCCAGCACAT 57.040 33.333 9.61 0.00 0.00 3.21
4017 4095 1.134280 CAGAAGGCGGTGATCATCCTT 60.134 52.381 20.10 20.10 41.27 3.36
4092 4170 2.894765 TGTAATCCGGACTGTGTCTTCA 59.105 45.455 6.12 0.00 32.47 3.02
4095 4173 2.631062 TGTTGTAATCCGGACTGTGTCT 59.369 45.455 6.12 0.00 32.47 3.41
4105 4183 6.816640 TCAGTATTCTTCCTTGTTGTAATCCG 59.183 38.462 0.00 0.00 0.00 4.18
4259 4337 6.668323 ACAACGATTACAACATTTGAGAAGG 58.332 36.000 0.00 0.00 0.00 3.46
4275 4353 9.063615 AGAAGATAACCAAAACTAACAACGATT 57.936 29.630 0.00 0.00 0.00 3.34
4317 4399 7.968405 GCATCACGGAACTGATAAAAACTAAAT 59.032 33.333 0.00 0.00 29.28 1.40
4319 4401 6.401688 CGCATCACGGAACTGATAAAAACTAA 60.402 38.462 0.00 0.00 38.44 2.24
4321 4403 4.142902 CGCATCACGGAACTGATAAAAACT 60.143 41.667 0.00 0.00 38.44 2.66
4322 4404 4.088648 CGCATCACGGAACTGATAAAAAC 58.911 43.478 0.00 0.00 38.44 2.43
4323 4405 4.335082 CGCATCACGGAACTGATAAAAA 57.665 40.909 0.00 0.00 38.44 1.94
4377 4459 1.993653 TCATGAAGTGAGCCCCCAG 59.006 57.895 0.00 0.00 31.80 4.45
4378 4460 4.248908 TCATGAAGTGAGCCCCCA 57.751 55.556 0.00 0.00 31.80 4.96
4432 4514 5.475273 TTATGCGAAGAAGAGAAATGCAG 57.525 39.130 0.00 0.00 33.99 4.41
4482 4564 4.038271 AGGAAATCCAGCATTCAGAACA 57.962 40.909 1.67 0.00 38.89 3.18
4498 4580 7.650104 CGGCTTTTTATTCAAGTACAAAGGAAA 59.350 33.333 0.00 0.00 0.00 3.13
4523 4605 0.949105 GTGGCCTCTTGGTGTACACG 60.949 60.000 19.41 6.48 35.27 4.49
4556 4638 5.487488 AGAGTTACATTATTGAGTGTCCCCA 59.513 40.000 0.00 0.00 0.00 4.96
4573 4655 9.761504 AGTTCTAGTTACCAAAGAAAGAGTTAC 57.238 33.333 0.00 0.00 31.41 2.50
4603 4685 7.067859 TCGTTTGGCATAGATACTAAGTACACT 59.932 37.037 0.00 0.00 0.00 3.55
4660 4742 9.830186 ATATACTTTCCTCTACATGGTCAGTAT 57.170 33.333 0.00 0.00 36.21 2.12
4724 4809 7.031975 GCAGCTATTGAAAAACTCTTGCTAAT 58.968 34.615 0.00 0.00 0.00 1.73
4837 4940 3.583966 TCCTTGGTATTGGTAGGAAACGT 59.416 43.478 0.00 0.00 33.98 3.99
4838 4941 3.937079 GTCCTTGGTATTGGTAGGAAACG 59.063 47.826 0.00 0.00 38.46 3.60
4920 5023 0.679002 GATGCATGTGACCAGCCTGT 60.679 55.000 2.46 0.00 0.00 4.00
4962 5065 6.622896 GCCAGCACATAAACGAATCTAAAAGT 60.623 38.462 0.00 0.00 0.00 2.66
5045 5148 8.296713 AGACGCAACATGTATTTCTAAAATTGT 58.703 29.630 0.00 0.00 0.00 2.71
5135 5238 4.176271 GGAAAGGCAGTACATCAAATTGC 58.824 43.478 0.00 0.00 0.00 3.56
5136 5239 5.389859 TGGAAAGGCAGTACATCAAATTG 57.610 39.130 0.00 0.00 0.00 2.32
5137 5240 5.716228 TCATGGAAAGGCAGTACATCAAATT 59.284 36.000 0.00 0.00 0.00 1.82
5139 5242 4.661222 TCATGGAAAGGCAGTACATCAAA 58.339 39.130 0.00 0.00 0.00 2.69
5141 5244 3.998913 TCATGGAAAGGCAGTACATCA 57.001 42.857 0.00 0.00 0.00 3.07
5142 5245 6.058183 AGTAATCATGGAAAGGCAGTACATC 58.942 40.000 0.00 0.00 0.00 3.06
5143 5246 6.006275 AGTAATCATGGAAAGGCAGTACAT 57.994 37.500 0.00 0.00 0.00 2.29
5144 5247 5.435686 AGTAATCATGGAAAGGCAGTACA 57.564 39.130 0.00 0.00 0.00 2.90
5145 5248 5.297029 GGAAGTAATCATGGAAAGGCAGTAC 59.703 44.000 0.00 0.00 0.00 2.73
5147 5250 4.018050 AGGAAGTAATCATGGAAAGGCAGT 60.018 41.667 0.00 0.00 0.00 4.40
5148 5251 4.530875 AGGAAGTAATCATGGAAAGGCAG 58.469 43.478 0.00 0.00 0.00 4.85
5149 5252 4.591321 AGGAAGTAATCATGGAAAGGCA 57.409 40.909 0.00 0.00 0.00 4.75
5150 5253 5.196695 AGAAGGAAGTAATCATGGAAAGGC 58.803 41.667 0.00 0.00 0.00 4.35
5151 5254 7.177392 ACAAAGAAGGAAGTAATCATGGAAAGG 59.823 37.037 0.00 0.00 0.00 3.11
5152 5255 8.115490 ACAAAGAAGGAAGTAATCATGGAAAG 57.885 34.615 0.00 0.00 0.00 2.62
5154 5257 8.383175 AGTACAAAGAAGGAAGTAATCATGGAA 58.617 33.333 0.00 0.00 0.00 3.53
5156 5259 7.281100 GGAGTACAAAGAAGGAAGTAATCATGG 59.719 40.741 0.00 0.00 34.35 3.66
5157 5260 8.043710 AGGAGTACAAAGAAGGAAGTAATCATG 58.956 37.037 0.00 0.00 34.35 3.07
5158 5261 8.152023 AGGAGTACAAAGAAGGAAGTAATCAT 57.848 34.615 0.00 0.00 34.35 2.45
5202 5366 6.747280 CAGCATGTTATTAACTGTAAACTGGC 59.253 38.462 7.99 0.00 0.00 4.85
5260 5431 4.536765 TGCAGACTGTGATAGATAGTGGA 58.463 43.478 3.99 0.00 0.00 4.02
5262 5433 4.744137 GCTTGCAGACTGTGATAGATAGTG 59.256 45.833 3.99 0.00 0.00 2.74
5266 5437 3.900966 TGCTTGCAGACTGTGATAGAT 57.099 42.857 3.99 0.00 0.00 1.98
5357 5528 0.602562 CCACATCCACGGTTGCAAAT 59.397 50.000 0.00 0.00 0.00 2.32
5480 5651 1.670406 GCTGGTGGTGTCTGAGCTG 60.670 63.158 0.00 0.00 0.00 4.24
5730 5901 4.631740 TCCACTCCCACCCAGCGA 62.632 66.667 0.00 0.00 0.00 4.93
5731 5902 4.087892 CTCCACTCCCACCCAGCG 62.088 72.222 0.00 0.00 0.00 5.18
5806 5977 3.057969 TCTGTGTTGCTAACAGGGATG 57.942 47.619 12.15 0.00 44.26 3.51
5820 5991 1.293062 ATCCTCCCTTGCATCTGTGT 58.707 50.000 0.00 0.00 0.00 3.72
5822 5993 2.309755 TCAAATCCTCCCTTGCATCTGT 59.690 45.455 0.00 0.00 0.00 3.41
5826 5997 2.622452 CCTGTCAAATCCTCCCTTGCAT 60.622 50.000 0.00 0.00 0.00 3.96
5846 6017 2.152016 GTTGTTAGTCTTGTGGGCTCC 58.848 52.381 0.00 0.00 0.00 4.70
5979 6152 2.749800 GCTTGACAAGACCCTTTCTGGT 60.750 50.000 19.51 0.00 41.79 4.00
6036 6211 0.413037 ATGACCAAAATGCCCTGGGA 59.587 50.000 19.27 1.59 37.00 4.37
6037 6212 0.538118 CATGACCAAAATGCCCTGGG 59.462 55.000 8.86 8.86 37.00 4.45
6218 6393 6.296374 CCTCTCCTTCCTTCATCTTCTCTTTT 60.296 42.308 0.00 0.00 0.00 2.27
6223 6398 4.289245 CTCCTCTCCTTCCTTCATCTTCT 58.711 47.826 0.00 0.00 0.00 2.85
6235 6410 2.888069 GCTCTTGACTCCTCCTCTCCTT 60.888 54.545 0.00 0.00 0.00 3.36
6236 6411 1.341976 GCTCTTGACTCCTCCTCTCCT 60.342 57.143 0.00 0.00 0.00 3.69
6237 6412 1.111277 GCTCTTGACTCCTCCTCTCC 58.889 60.000 0.00 0.00 0.00 3.71
6352 6527 9.959749 ACCAATAACACAGTAACAAAACATAAG 57.040 29.630 0.00 0.00 0.00 1.73
6385 6563 4.194640 AGATTCGCAGATTGCAATGTAGT 58.805 39.130 18.59 0.00 45.36 2.73
6386 6564 4.510711 AGAGATTCGCAGATTGCAATGTAG 59.489 41.667 18.59 10.53 45.36 2.74
6501 6680 0.918258 TCCAATGCAGTAGATGGGCA 59.082 50.000 0.00 0.00 42.43 5.36
6502 6681 2.157738 GATCCAATGCAGTAGATGGGC 58.842 52.381 0.00 0.00 33.66 5.36
6505 6684 4.825634 ACAATGGATCCAATGCAGTAGATG 59.174 41.667 26.65 11.62 32.88 2.90
6506 6685 5.057843 ACAATGGATCCAATGCAGTAGAT 57.942 39.130 26.65 5.45 32.88 1.98
6507 6686 4.164796 AGACAATGGATCCAATGCAGTAGA 59.835 41.667 26.65 0.00 32.88 2.59
6508 6687 4.458397 AGACAATGGATCCAATGCAGTAG 58.542 43.478 26.65 5.45 32.88 2.57
6509 6688 4.508551 AGACAATGGATCCAATGCAGTA 57.491 40.909 26.65 0.00 32.88 2.74
6510 6689 3.377253 AGACAATGGATCCAATGCAGT 57.623 42.857 26.65 16.45 32.88 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.