Multiple sequence alignment - TraesCS1B01G207500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G207500 chr1B 100.000 4517 0 0 1 4517 374860794 374856278 0.000000e+00 8342.0
1 TraesCS1B01G207500 chr1B 83.139 771 104 16 1 757 223767522 223768280 0.000000e+00 680.0
2 TraesCS1B01G207500 chr1B 95.122 41 0 1 751 791 374860076 374860038 3.770000e-06 63.9
3 TraesCS1B01G207500 chr1A 93.539 2368 119 24 1001 3349 347920801 347918449 0.000000e+00 3494.0
4 TraesCS1B01G207500 chr1A 83.169 1016 139 21 2 1003 22645661 22644664 0.000000e+00 900.0
5 TraesCS1B01G207500 chr1A 82.417 1018 146 27 1 1003 509779412 509778413 0.000000e+00 857.0
6 TraesCS1B01G207500 chr1A 93.902 164 10 0 3347 3510 347918367 347918204 9.700000e-62 248.0
7 TraesCS1B01G207500 chr1D 90.904 1891 94 23 1001 2868 275605752 275603917 0.000000e+00 2468.0
8 TraesCS1B01G207500 chr1D 92.745 510 22 1 2855 3349 275598120 275597611 0.000000e+00 723.0
9 TraesCS1B01G207500 chr1D 92.691 301 17 2 2559 2859 275603520 275603225 3.230000e-116 429.0
10 TraesCS1B01G207500 chr1D 84.247 292 42 2 369 657 233092914 233092624 9.570000e-72 281.0
11 TraesCS1B01G207500 chr1D 91.925 161 13 0 3350 3510 275597521 275597361 4.550000e-55 226.0
12 TraesCS1B01G207500 chr1D 93.023 43 3 0 2559 2601 275603920 275603878 3.770000e-06 63.9
13 TraesCS1B01G207500 chr2B 83.235 1020 139 27 1 1003 718215372 718216376 0.000000e+00 907.0
14 TraesCS1B01G207500 chr7D 87.484 759 78 12 1 751 436475207 436475956 0.000000e+00 859.0
15 TraesCS1B01G207500 chr7D 89.525 611 62 1 3909 4517 623368714 623369324 0.000000e+00 773.0
16 TraesCS1B01G207500 chr7D 83.092 692 102 10 78 757 421148325 421147637 2.310000e-172 616.0
17 TraesCS1B01G207500 chr7D 89.855 69 6 1 684 751 66541122 66541054 2.240000e-13 87.9
18 TraesCS1B01G207500 chr2D 86.606 769 80 6 5 751 601266058 601265291 0.000000e+00 828.0
19 TraesCS1B01G207500 chr2D 86.688 616 77 4 3907 4517 477329236 477328621 0.000000e+00 678.0
20 TraesCS1B01G207500 chr3A 82.335 985 143 25 4 973 26849680 26848712 0.000000e+00 826.0
21 TraesCS1B01G207500 chr5B 81.827 1018 151 23 1 1003 407221312 407220314 0.000000e+00 824.0
22 TraesCS1B01G207500 chr5B 86.842 76 7 3 677 751 272432786 272432859 1.040000e-11 82.4
23 TraesCS1B01G207500 chr4B 88.855 664 62 11 1 656 576427080 576426421 0.000000e+00 806.0
24 TraesCS1B01G207500 chr4B 88.312 77 6 3 684 757 403056978 403056902 6.220000e-14 89.8
25 TraesCS1B01G207500 chr7B 81.023 1017 163 20 1 1003 26282329 26283329 0.000000e+00 782.0
26 TraesCS1B01G207500 chr7B 86.275 51 7 0 1553 1603 149935372 149935322 6.310000e-04 56.5
27 TraesCS1B01G207500 chr7A 81.848 617 103 9 3907 4517 50367956 50367343 1.120000e-140 510.0
28 TraesCS1B01G207500 chr6D 80.408 735 91 13 78 760 115650557 115649824 1.120000e-140 510.0
29 TraesCS1B01G207500 chrUn 79.126 618 108 18 3910 4517 15319160 15319766 1.510000e-109 407.0
30 TraesCS1B01G207500 chrUn 79.126 618 108 18 3910 4517 271509712 271510318 1.510000e-109 407.0
31 TraesCS1B01G207500 chr5D 85.882 170 24 0 481 650 72546006 72545837 9.980000e-42 182.0
32 TraesCS1B01G207500 chr6B 87.162 148 19 0 512 659 34310664 34310517 7.770000e-38 169.0
33 TraesCS1B01G207500 chr6B 93.902 82 2 3 3901 3981 33524251 33524330 2.210000e-23 121.0
34 TraesCS1B01G207500 chr6B 92.308 65 2 2 3908 3969 637125351 637125287 6.220000e-14 89.8
35 TraesCS1B01G207500 chr6B 86.275 51 7 0 1553 1603 157564903 157564853 6.310000e-04 56.5
36 TraesCS1B01G207500 chr6A 74.709 344 70 11 4174 4517 213146572 213146898 2.190000e-28 137.0
37 TraesCS1B01G207500 chr6A 86.813 91 10 2 3908 3996 213146462 213146552 2.880000e-17 100.0
38 TraesCS1B01G207500 chr3D 96.078 51 2 0 3908 3958 56688596 56688546 2.900000e-12 84.2
39 TraesCS1B01G207500 chr4D 94.444 54 2 1 3913 3966 53259054 53259002 1.040000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G207500 chr1B 374856278 374860794 4516 True 4202.950000 8342 97.5610 1 4517 2 chr1B.!!$R1 4516
1 TraesCS1B01G207500 chr1B 223767522 223768280 758 False 680.000000 680 83.1390 1 757 1 chr1B.!!$F1 756
2 TraesCS1B01G207500 chr1A 347918204 347920801 2597 True 1871.000000 3494 93.7205 1001 3510 2 chr1A.!!$R3 2509
3 TraesCS1B01G207500 chr1A 22644664 22645661 997 True 900.000000 900 83.1690 2 1003 1 chr1A.!!$R1 1001
4 TraesCS1B01G207500 chr1A 509778413 509779412 999 True 857.000000 857 82.4170 1 1003 1 chr1A.!!$R2 1002
5 TraesCS1B01G207500 chr1D 275603225 275605752 2527 True 986.966667 2468 92.2060 1001 2868 3 chr1D.!!$R3 1867
6 TraesCS1B01G207500 chr1D 275597361 275598120 759 True 474.500000 723 92.3350 2855 3510 2 chr1D.!!$R2 655
7 TraesCS1B01G207500 chr2B 718215372 718216376 1004 False 907.000000 907 83.2350 1 1003 1 chr2B.!!$F1 1002
8 TraesCS1B01G207500 chr7D 436475207 436475956 749 False 859.000000 859 87.4840 1 751 1 chr7D.!!$F1 750
9 TraesCS1B01G207500 chr7D 623368714 623369324 610 False 773.000000 773 89.5250 3909 4517 1 chr7D.!!$F2 608
10 TraesCS1B01G207500 chr7D 421147637 421148325 688 True 616.000000 616 83.0920 78 757 1 chr7D.!!$R2 679
11 TraesCS1B01G207500 chr2D 601265291 601266058 767 True 828.000000 828 86.6060 5 751 1 chr2D.!!$R2 746
12 TraesCS1B01G207500 chr2D 477328621 477329236 615 True 678.000000 678 86.6880 3907 4517 1 chr2D.!!$R1 610
13 TraesCS1B01G207500 chr3A 26848712 26849680 968 True 826.000000 826 82.3350 4 973 1 chr3A.!!$R1 969
14 TraesCS1B01G207500 chr5B 407220314 407221312 998 True 824.000000 824 81.8270 1 1003 1 chr5B.!!$R1 1002
15 TraesCS1B01G207500 chr4B 576426421 576427080 659 True 806.000000 806 88.8550 1 656 1 chr4B.!!$R2 655
16 TraesCS1B01G207500 chr7B 26282329 26283329 1000 False 782.000000 782 81.0230 1 1003 1 chr7B.!!$F1 1002
17 TraesCS1B01G207500 chr7A 50367343 50367956 613 True 510.000000 510 81.8480 3907 4517 1 chr7A.!!$R1 610
18 TraesCS1B01G207500 chr6D 115649824 115650557 733 True 510.000000 510 80.4080 78 760 1 chr6D.!!$R1 682
19 TraesCS1B01G207500 chrUn 15319160 15319766 606 False 407.000000 407 79.1260 3910 4517 1 chrUn.!!$F1 607
20 TraesCS1B01G207500 chrUn 271509712 271510318 606 False 407.000000 407 79.1260 3910 4517 1 chrUn.!!$F2 607

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
331 340 0.236711 GCATCGAAATCGGCCATGAG 59.763 55.0 2.24 0.0 40.29 2.90 F
590 621 0.464554 GCAGCTCGAAGCCCCTATTT 60.465 55.0 3.66 0.0 43.77 1.40 F
928 1026 0.523072 CGGCCTCTGTTTTGATGTGG 59.477 55.0 0.00 0.0 0.00 4.17 F
1719 1833 0.514691 CAGAAGCCGAGTTCAGTTGC 59.485 55.0 0.00 0.0 0.00 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1368 1479 0.101399 CGTGAACATCTCCTCTCCGG 59.899 60.000 0.0 0.0 0.0 5.14 R
1634 1747 1.963515 GCAGAAATTTGACCCTGGTGT 59.036 47.619 0.0 0.0 0.0 4.16 R
2887 3468 1.130373 CGTAATTCACCTGCACGCAAT 59.870 47.619 0.0 0.0 0.0 3.56 R
3604 4360 0.035152 TCATCTGTGCTGGGCGATTT 60.035 50.000 0.0 0.0 0.0 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
163 172 0.251386 ACTTCGACCTCTGCTCCTCA 60.251 55.000 0.00 0.00 0.00 3.86
174 183 4.147449 CTCCTCACGGATGCGCCA 62.147 66.667 6.51 0.00 39.01 5.69
243 252 0.323087 TGGAGGATGAGGTCGTCGAA 60.323 55.000 0.00 0.00 41.53 3.71
299 308 3.315142 AAGCTCCGCTCGGCAATGA 62.315 57.895 2.96 0.00 38.25 2.57
302 311 3.699955 CTCCGCTCGGCAATGACGA 62.700 63.158 11.91 11.91 42.47 4.20
331 340 0.236711 GCATCGAAATCGGCCATGAG 59.763 55.000 2.24 0.00 40.29 2.90
334 343 3.588955 CATCGAAATCGGCCATGAGATA 58.411 45.455 2.24 0.00 40.29 1.98
434 446 2.273179 CGACCACTCCTTCACGGGA 61.273 63.158 0.00 0.00 0.00 5.14
469 500 1.939769 GAAGAGGAAGAGCTCGCGGT 61.940 60.000 6.13 0.00 0.00 5.68
510 541 2.282251 ACGAGCCTGTGACCGAGA 60.282 61.111 0.00 0.00 0.00 4.04
567 598 4.856607 CGCGGACGAGGAAGCTCC 62.857 72.222 0.00 0.00 43.93 4.70
590 621 0.464554 GCAGCTCGAAGCCCCTATTT 60.465 55.000 3.66 0.00 43.77 1.40
650 681 4.609018 ACACGCCGCTTGTGCTCT 62.609 61.111 1.00 0.00 41.03 4.09
673 743 4.143333 GCTACTCCCGAAGCCGCA 62.143 66.667 0.00 0.00 32.40 5.69
734 819 2.795175 GGCGACGAGAAATATGAGGA 57.205 50.000 0.00 0.00 0.00 3.71
735 820 3.305398 GGCGACGAGAAATATGAGGAT 57.695 47.619 0.00 0.00 0.00 3.24
736 821 2.989840 GGCGACGAGAAATATGAGGATG 59.010 50.000 0.00 0.00 0.00 3.51
737 822 2.989840 GCGACGAGAAATATGAGGATGG 59.010 50.000 0.00 0.00 0.00 3.51
738 823 3.305403 GCGACGAGAAATATGAGGATGGA 60.305 47.826 0.00 0.00 0.00 3.41
739 824 4.796290 GCGACGAGAAATATGAGGATGGAA 60.796 45.833 0.00 0.00 0.00 3.53
740 825 5.473931 CGACGAGAAATATGAGGATGGAAT 58.526 41.667 0.00 0.00 0.00 3.01
741 826 5.928839 CGACGAGAAATATGAGGATGGAATT 59.071 40.000 0.00 0.00 0.00 2.17
742 827 6.128715 CGACGAGAAATATGAGGATGGAATTG 60.129 42.308 0.00 0.00 0.00 2.32
743 828 6.000219 ACGAGAAATATGAGGATGGAATTGG 59.000 40.000 0.00 0.00 0.00 3.16
744 829 5.413833 CGAGAAATATGAGGATGGAATTGGG 59.586 44.000 0.00 0.00 0.00 4.12
745 830 6.535161 AGAAATATGAGGATGGAATTGGGA 57.465 37.500 0.00 0.00 0.00 4.37
746 831 6.925934 AGAAATATGAGGATGGAATTGGGAA 58.074 36.000 0.00 0.00 0.00 3.97
747 832 7.364627 AGAAATATGAGGATGGAATTGGGAAA 58.635 34.615 0.00 0.00 0.00 3.13
748 833 8.014859 AGAAATATGAGGATGGAATTGGGAAAT 58.985 33.333 0.00 0.00 0.00 2.17
749 834 8.571460 AAATATGAGGATGGAATTGGGAAATT 57.429 30.769 0.00 0.00 0.00 1.82
750 835 5.881923 ATGAGGATGGAATTGGGAAATTG 57.118 39.130 0.00 0.00 0.00 2.32
751 836 4.945411 TGAGGATGGAATTGGGAAATTGA 58.055 39.130 0.00 0.00 0.00 2.57
752 837 4.711355 TGAGGATGGAATTGGGAAATTGAC 59.289 41.667 0.00 0.00 0.00 3.18
753 838 3.701040 AGGATGGAATTGGGAAATTGACG 59.299 43.478 0.00 0.00 0.00 4.35
754 839 3.699038 GGATGGAATTGGGAAATTGACGA 59.301 43.478 0.00 0.00 0.00 4.20
755 840 4.202050 GGATGGAATTGGGAAATTGACGAG 60.202 45.833 0.00 0.00 0.00 4.18
756 841 4.027674 TGGAATTGGGAAATTGACGAGA 57.972 40.909 0.00 0.00 0.00 4.04
757 842 4.402829 TGGAATTGGGAAATTGACGAGAA 58.597 39.130 0.00 0.00 0.00 2.87
758 843 4.830046 TGGAATTGGGAAATTGACGAGAAA 59.170 37.500 0.00 0.00 0.00 2.52
759 844 5.480073 TGGAATTGGGAAATTGACGAGAAAT 59.520 36.000 0.00 0.00 0.00 2.17
760 845 6.661377 TGGAATTGGGAAATTGACGAGAAATA 59.339 34.615 0.00 0.00 0.00 1.40
761 846 7.341769 TGGAATTGGGAAATTGACGAGAAATAT 59.658 33.333 0.00 0.00 0.00 1.28
762 847 7.649306 GGAATTGGGAAATTGACGAGAAATATG 59.351 37.037 0.00 0.00 0.00 1.78
763 848 7.880160 ATTGGGAAATTGACGAGAAATATGA 57.120 32.000 0.00 0.00 0.00 2.15
764 849 6.925610 TGGGAAATTGACGAGAAATATGAG 57.074 37.500 0.00 0.00 0.00 2.90
765 850 5.822519 TGGGAAATTGACGAGAAATATGAGG 59.177 40.000 0.00 0.00 0.00 3.86
767 852 6.712547 GGGAAATTGACGAGAAATATGAGGAT 59.287 38.462 0.00 0.00 0.00 3.24
772 857 6.425210 TGACGAGAAATATGAGGATGGAAT 57.575 37.500 0.00 0.00 0.00 3.01
815 902 0.916809 CAACGGGGGATAGGGTTTCT 59.083 55.000 0.00 0.00 0.00 2.52
820 907 2.691850 CGGGGGATAGGGTTTCTACTCA 60.692 54.545 0.00 0.00 0.00 3.41
821 908 3.599348 GGGGGATAGGGTTTCTACTCAT 58.401 50.000 0.00 0.00 0.00 2.90
829 916 8.709308 GGATAGGGTTTCTACTCATATATGCAT 58.291 37.037 3.79 3.79 0.00 3.96
832 919 6.211584 AGGGTTTCTACTCATATATGCATCGT 59.788 38.462 0.19 0.00 0.00 3.73
861 956 5.312178 CCATAGATATACTGGTTTGGGGGAA 59.688 44.000 0.00 0.00 0.00 3.97
869 964 1.535444 GTTTGGGGGAAGGGGGTTG 60.535 63.158 0.00 0.00 0.00 3.77
870 965 3.476356 TTTGGGGGAAGGGGGTTGC 62.476 63.158 0.00 0.00 0.00 4.17
872 967 3.922364 GGGGGAAGGGGGTTGCAA 61.922 66.667 0.00 0.00 0.00 4.08
874 969 2.526110 GGGAAGGGGGTTGCAAGT 59.474 61.111 0.00 0.00 0.00 3.16
875 970 1.152333 GGGAAGGGGGTTGCAAGTT 60.152 57.895 0.00 0.00 0.00 2.66
876 971 1.471829 GGGAAGGGGGTTGCAAGTTG 61.472 60.000 0.00 0.00 0.00 3.16
877 972 1.367471 GAAGGGGGTTGCAAGTTGC 59.633 57.895 21.17 21.17 45.29 4.17
920 1018 3.069729 GGATGAGTATACGGCCTCTGTTT 59.930 47.826 0.00 0.00 0.00 2.83
924 1022 4.161565 TGAGTATACGGCCTCTGTTTTGAT 59.838 41.667 0.00 0.00 0.00 2.57
925 1023 4.442706 AGTATACGGCCTCTGTTTTGATG 58.557 43.478 0.00 0.00 0.00 3.07
926 1024 2.851263 TACGGCCTCTGTTTTGATGT 57.149 45.000 0.00 0.00 0.00 3.06
928 1026 0.523072 CGGCCTCTGTTTTGATGTGG 59.477 55.000 0.00 0.00 0.00 4.17
937 1035 6.462768 CCTCTGTTTTGATGTGGAAATTGGAA 60.463 38.462 0.00 0.00 0.00 3.53
961 1059 2.300723 AGTGCGTATATTGGCCGGAATA 59.699 45.455 5.05 0.94 0.00 1.75
990 1088 1.005097 TCGCCACTCTTACAGGGTCTA 59.995 52.381 0.00 0.00 0.00 2.59
1003 1101 2.356382 CAGGGTCTACTAGAGTTGCTCG 59.644 54.545 0.00 0.00 35.36 5.03
1030 1132 4.456914 GAGAAATAGCTACGCTAGACGAC 58.543 47.826 12.46 0.00 44.66 4.34
1185 1288 2.284699 CTCCCGGTCCACCTCCTT 60.285 66.667 0.00 0.00 0.00 3.36
1191 1294 2.284405 GTCCACCTCCTTCCCCGA 60.284 66.667 0.00 0.00 0.00 5.14
1295 1398 2.860062 CGTGAGGAATCGTCTACGTTT 58.140 47.619 14.74 0.30 40.80 3.60
1368 1479 1.557371 CTGGAAGGAGGAAAGGGACTC 59.443 57.143 0.00 0.00 38.49 3.36
1530 1643 5.292589 CCGCGATTGTTATAACTGGTTAACT 59.707 40.000 16.33 0.00 31.16 2.24
1532 1645 6.681178 CGCGATTGTTATAACTGGTTAACTTG 59.319 38.462 16.33 1.43 31.16 3.16
1629 1742 5.995282 TGGCTGATTCGTTCTTCTTTCTTAA 59.005 36.000 0.00 0.00 0.00 1.85
1634 1747 8.827177 TGATTCGTTCTTCTTTCTTAAGCTTA 57.173 30.769 0.86 0.86 0.00 3.09
1674 1787 5.061808 TCTGCGTTTTTCTACTAGAATTCGC 59.938 40.000 22.01 22.01 42.29 4.70
1707 1821 2.034685 GGTGGAACTGAAAACAGAAGCC 59.965 50.000 0.00 0.00 36.74 4.35
1719 1833 0.514691 CAGAAGCCGAGTTCAGTTGC 59.485 55.000 0.00 0.00 0.00 4.17
1726 1840 3.758554 AGCCGAGTTCAGTTGCAATTATT 59.241 39.130 0.59 0.00 0.00 1.40
1802 1916 5.014755 TCAGTAAAGACCATTGTATTGGGGT 59.985 40.000 0.00 0.00 41.35 4.95
1869 1983 5.163513 CACCAAGGAAAAGATGCACAATAC 58.836 41.667 0.00 0.00 0.00 1.89
1964 2078 5.047092 CACAGCAAAGGTTTGGGAATTATCT 60.047 40.000 4.67 0.00 38.57 1.98
1972 2086 8.762481 AAGGTTTGGGAATTATCTTATGGTAC 57.238 34.615 0.00 0.00 0.00 3.34
1985 2099 5.382616 TCTTATGGTACGAAGATAGCTCCA 58.617 41.667 0.00 0.00 29.66 3.86
2085 2206 4.873746 TGTTTCAGAGTACAAGGAGAGG 57.126 45.455 0.00 0.00 0.00 3.69
2162 2283 3.554934 GCCAGGTTGATGATTCCACATA 58.445 45.455 0.00 0.00 0.00 2.29
2173 2294 7.961351 TGATGATTCCACATACCTTTTGTTTT 58.039 30.769 0.00 0.00 0.00 2.43
2319 2440 5.362430 ACCAAATGAAAGGCTTGTTGAGTTA 59.638 36.000 0.00 0.00 0.00 2.24
2322 2443 4.431416 TGAAAGGCTTGTTGAGTTAGGA 57.569 40.909 0.00 0.00 0.00 2.94
2366 2487 4.650734 TGTGTTGGTGAGCAATCTAATGA 58.349 39.130 0.00 0.00 0.00 2.57
2457 2578 4.335315 ACATGATATTTTGACGCGGTCATT 59.665 37.500 12.47 3.32 42.40 2.57
2470 2591 6.743627 TGACGCGGTCATTTTATTTTGTATTC 59.256 34.615 12.47 0.00 37.67 1.75
2477 2598 9.567848 GGTCATTTTATTTTGTATTCATCGTGT 57.432 29.630 0.00 0.00 0.00 4.49
2562 2683 6.874664 GCTTATCTAGCCCAGTTAAGAATACC 59.125 42.308 13.91 0.00 44.48 2.73
2594 2715 4.183865 TCTGAACCTATGAACTGCAATCG 58.816 43.478 0.00 0.00 0.00 3.34
2607 2728 4.369182 ACTGCAATCGTAACAGTATAGGC 58.631 43.478 0.00 0.00 42.65 3.93
2716 2838 9.895138 GGGTGATGTCTAAAATAAAGGTTACTA 57.105 33.333 0.00 0.00 0.00 1.82
2755 2877 3.199508 AGGAGAGGAGACATGTGAATTGG 59.800 47.826 1.15 0.00 0.00 3.16
2841 2963 7.607607 TGCAAACATATCAGTCTTTATGTCACT 59.392 33.333 5.92 0.00 37.91 3.41
2842 2964 9.098355 GCAAACATATCAGTCTTTATGTCACTA 57.902 33.333 5.92 0.00 37.91 2.74
2939 3520 4.196971 CCTTGTACTACTTATGCAACCCC 58.803 47.826 0.00 0.00 0.00 4.95
2951 3532 1.314730 GCAACCCCTCGACAAAGAAA 58.685 50.000 0.00 0.00 0.00 2.52
2954 3535 2.545537 ACCCCTCGACAAAGAAAGAC 57.454 50.000 0.00 0.00 0.00 3.01
3032 3613 1.906990 ACAGCAGCTTCAGCAATCTT 58.093 45.000 0.75 0.00 45.16 2.40
3080 3661 0.311165 ACTCGTGACGTCAGTTCAGG 59.689 55.000 20.73 8.70 0.00 3.86
3139 3720 2.108250 GAGGACAGAGAGGAGAGGCTAT 59.892 54.545 0.00 0.00 0.00 2.97
3157 3738 4.513318 GGCTATGCAGGAGTTACAATTCTC 59.487 45.833 0.00 0.00 0.00 2.87
3240 3821 8.370940 TCTCTGTGAGAAATCAGTAAGTTCATT 58.629 33.333 0.00 0.00 35.59 2.57
3244 3825 7.877612 TGTGAGAAATCAGTAAGTTCATTAGCA 59.122 33.333 0.00 0.00 0.00 3.49
3252 3833 7.168219 TCAGTAAGTTCATTAGCATTGAGGTT 58.832 34.615 0.00 0.00 0.00 3.50
3255 3836 8.860088 AGTAAGTTCATTAGCATTGAGGTTTTT 58.140 29.630 0.00 0.00 0.00 1.94
3303 3912 3.756963 GGTTAGGAGTTGGCAGTAAAAGG 59.243 47.826 0.00 0.00 0.00 3.11
3360 4064 7.792374 TGTTCTTGAATACAATATCTCTGCC 57.208 36.000 0.00 0.00 35.37 4.85
3390 4094 7.921214 AGTAGATATCCACATGAACGTTAACAG 59.079 37.037 0.00 1.29 0.00 3.16
3485 4241 3.272766 GTTTGCCAAACTGCTGGTC 57.727 52.632 12.98 0.00 38.86 4.02
3510 4266 3.118629 ACATGTAATCAGTCGCTCCATGT 60.119 43.478 0.00 0.00 37.27 3.21
3511 4267 4.099419 ACATGTAATCAGTCGCTCCATGTA 59.901 41.667 0.00 0.00 39.51 2.29
3513 4269 3.445805 TGTAATCAGTCGCTCCATGTACA 59.554 43.478 0.00 0.00 0.00 2.90
3514 4270 2.586258 ATCAGTCGCTCCATGTACAC 57.414 50.000 0.00 0.00 0.00 2.90
3515 4271 1.253100 TCAGTCGCTCCATGTACACA 58.747 50.000 0.00 0.00 0.00 3.72
3516 4272 1.616374 TCAGTCGCTCCATGTACACAA 59.384 47.619 0.00 0.00 0.00 3.33
3517 4273 1.726791 CAGTCGCTCCATGTACACAAC 59.273 52.381 0.00 0.00 0.00 3.32
3518 4274 1.343142 AGTCGCTCCATGTACACAACA 59.657 47.619 0.00 0.00 43.86 3.33
3519 4275 2.139917 GTCGCTCCATGTACACAACAA 58.860 47.619 0.00 0.00 42.70 2.83
3520 4276 2.096417 GTCGCTCCATGTACACAACAAC 60.096 50.000 0.00 0.00 42.70 3.32
3521 4277 2.143122 CGCTCCATGTACACAACAACT 58.857 47.619 0.00 0.00 42.70 3.16
3522 4278 3.006003 TCGCTCCATGTACACAACAACTA 59.994 43.478 0.00 0.00 42.70 2.24
3523 4279 3.367932 CGCTCCATGTACACAACAACTAG 59.632 47.826 0.00 0.00 42.70 2.57
3524 4280 4.566004 GCTCCATGTACACAACAACTAGA 58.434 43.478 0.00 0.00 42.70 2.43
3525 4281 5.178797 GCTCCATGTACACAACAACTAGAT 58.821 41.667 0.00 0.00 42.70 1.98
3526 4282 5.643777 GCTCCATGTACACAACAACTAGATT 59.356 40.000 0.00 0.00 42.70 2.40
3527 4283 6.816640 GCTCCATGTACACAACAACTAGATTA 59.183 38.462 0.00 0.00 42.70 1.75
3528 4284 7.201530 GCTCCATGTACACAACAACTAGATTAC 60.202 40.741 0.00 0.00 42.70 1.89
3529 4285 6.809689 TCCATGTACACAACAACTAGATTACG 59.190 38.462 0.00 0.00 42.70 3.18
3530 4286 6.035650 CCATGTACACAACAACTAGATTACGG 59.964 42.308 0.00 0.00 42.70 4.02
3531 4287 5.472148 TGTACACAACAACTAGATTACGGG 58.528 41.667 0.00 0.00 34.29 5.28
3532 4288 4.877378 ACACAACAACTAGATTACGGGA 57.123 40.909 0.00 0.00 0.00 5.14
3533 4289 4.817517 ACACAACAACTAGATTACGGGAG 58.182 43.478 0.00 0.00 0.00 4.30
3534 4290 4.525487 ACACAACAACTAGATTACGGGAGA 59.475 41.667 0.00 0.00 0.00 3.71
3535 4291 5.103000 CACAACAACTAGATTACGGGAGAG 58.897 45.833 0.00 0.00 0.00 3.20
3536 4292 4.159879 ACAACAACTAGATTACGGGAGAGG 59.840 45.833 0.00 0.00 0.00 3.69
3537 4293 4.246712 ACAACTAGATTACGGGAGAGGA 57.753 45.455 0.00 0.00 0.00 3.71
3538 4294 4.607239 ACAACTAGATTACGGGAGAGGAA 58.393 43.478 0.00 0.00 0.00 3.36
3539 4295 5.021458 ACAACTAGATTACGGGAGAGGAAA 58.979 41.667 0.00 0.00 0.00 3.13
3540 4296 5.661759 ACAACTAGATTACGGGAGAGGAAAT 59.338 40.000 0.00 0.00 0.00 2.17
3541 4297 6.837568 ACAACTAGATTACGGGAGAGGAAATA 59.162 38.462 0.00 0.00 0.00 1.40
3542 4298 7.343833 ACAACTAGATTACGGGAGAGGAAATAA 59.656 37.037 0.00 0.00 0.00 1.40
3543 4299 7.527568 ACTAGATTACGGGAGAGGAAATAAG 57.472 40.000 0.00 0.00 0.00 1.73
3544 4300 5.216614 AGATTACGGGAGAGGAAATAAGC 57.783 43.478 0.00 0.00 0.00 3.09
3545 4301 4.902448 AGATTACGGGAGAGGAAATAAGCT 59.098 41.667 0.00 0.00 0.00 3.74
3546 4302 2.990066 ACGGGAGAGGAAATAAGCTG 57.010 50.000 0.00 0.00 0.00 4.24
3547 4303 2.188817 ACGGGAGAGGAAATAAGCTGT 58.811 47.619 0.00 0.00 0.00 4.40
3548 4304 2.093447 ACGGGAGAGGAAATAAGCTGTG 60.093 50.000 0.00 0.00 0.00 3.66
3549 4305 2.093447 CGGGAGAGGAAATAAGCTGTGT 60.093 50.000 0.00 0.00 0.00 3.72
3550 4306 3.274288 GGGAGAGGAAATAAGCTGTGTG 58.726 50.000 0.00 0.00 0.00 3.82
3551 4307 2.680339 GGAGAGGAAATAAGCTGTGTGC 59.320 50.000 0.00 0.00 43.29 4.57
3552 4308 3.338249 GAGAGGAAATAAGCTGTGTGCA 58.662 45.455 0.00 0.00 45.94 4.57
3553 4309 3.753272 GAGAGGAAATAAGCTGTGTGCAA 59.247 43.478 0.00 0.00 45.94 4.08
3554 4310 4.144297 AGAGGAAATAAGCTGTGTGCAAA 58.856 39.130 0.00 0.00 45.94 3.68
3555 4311 4.768968 AGAGGAAATAAGCTGTGTGCAAAT 59.231 37.500 0.00 0.00 45.94 2.32
3556 4312 4.813027 AGGAAATAAGCTGTGTGCAAATG 58.187 39.130 0.00 0.00 45.94 2.32
3557 4313 4.523943 AGGAAATAAGCTGTGTGCAAATGA 59.476 37.500 0.00 0.00 45.94 2.57
3558 4314 5.186409 AGGAAATAAGCTGTGTGCAAATGAT 59.814 36.000 0.00 0.00 45.94 2.45
3559 4315 5.290158 GGAAATAAGCTGTGTGCAAATGATG 59.710 40.000 0.00 0.00 45.94 3.07
3560 4316 2.736144 AAGCTGTGTGCAAATGATGG 57.264 45.000 0.00 0.00 45.94 3.51
3561 4317 0.892755 AGCTGTGTGCAAATGATGGG 59.107 50.000 0.00 0.00 45.94 4.00
3562 4318 0.604578 GCTGTGTGCAAATGATGGGT 59.395 50.000 0.00 0.00 42.31 4.51
3563 4319 1.001181 GCTGTGTGCAAATGATGGGTT 59.999 47.619 0.00 0.00 42.31 4.11
3564 4320 2.230992 GCTGTGTGCAAATGATGGGTTA 59.769 45.455 0.00 0.00 42.31 2.85
3565 4321 3.305950 GCTGTGTGCAAATGATGGGTTAA 60.306 43.478 0.00 0.00 42.31 2.01
3566 4322 4.487948 CTGTGTGCAAATGATGGGTTAAG 58.512 43.478 0.00 0.00 0.00 1.85
3567 4323 3.257873 TGTGTGCAAATGATGGGTTAAGG 59.742 43.478 0.00 0.00 0.00 2.69
3568 4324 3.509575 GTGTGCAAATGATGGGTTAAGGA 59.490 43.478 0.00 0.00 0.00 3.36
3569 4325 4.021544 GTGTGCAAATGATGGGTTAAGGAA 60.022 41.667 0.00 0.00 0.00 3.36
3570 4326 4.776837 TGTGCAAATGATGGGTTAAGGAAT 59.223 37.500 0.00 0.00 0.00 3.01
3571 4327 5.954752 TGTGCAAATGATGGGTTAAGGAATA 59.045 36.000 0.00 0.00 0.00 1.75
3572 4328 6.610830 TGTGCAAATGATGGGTTAAGGAATAT 59.389 34.615 0.00 0.00 0.00 1.28
3573 4329 7.782168 TGTGCAAATGATGGGTTAAGGAATATA 59.218 33.333 0.00 0.00 0.00 0.86
3574 4330 8.637986 GTGCAAATGATGGGTTAAGGAATATAA 58.362 33.333 0.00 0.00 0.00 0.98
3575 4331 8.859090 TGCAAATGATGGGTTAAGGAATATAAG 58.141 33.333 0.00 0.00 0.00 1.73
3576 4332 8.860088 GCAAATGATGGGTTAAGGAATATAAGT 58.140 33.333 0.00 0.00 0.00 2.24
3597 4353 7.549488 ATAAGTATTAGACCACAAGAACTGTGC 59.451 37.037 0.00 0.00 43.71 4.57
3609 4365 6.373779 ACAAGAACTGTGCTTTGATAAATCG 58.626 36.000 0.00 0.00 36.69 3.34
3610 4366 4.974591 AGAACTGTGCTTTGATAAATCGC 58.025 39.130 0.00 0.00 0.00 4.58
3611 4367 3.764885 ACTGTGCTTTGATAAATCGCC 57.235 42.857 0.00 0.00 0.00 5.54
3612 4368 2.423538 ACTGTGCTTTGATAAATCGCCC 59.576 45.455 0.00 0.00 0.00 6.13
3613 4369 2.423185 CTGTGCTTTGATAAATCGCCCA 59.577 45.455 0.00 0.00 0.00 5.36
3614 4370 2.423185 TGTGCTTTGATAAATCGCCCAG 59.577 45.455 0.00 0.00 0.00 4.45
3615 4371 1.405105 TGCTTTGATAAATCGCCCAGC 59.595 47.619 0.00 0.00 0.00 4.85
3616 4372 1.405105 GCTTTGATAAATCGCCCAGCA 59.595 47.619 0.00 0.00 0.00 4.41
3617 4373 2.796032 GCTTTGATAAATCGCCCAGCAC 60.796 50.000 0.00 0.00 0.00 4.40
3618 4374 2.121291 TTGATAAATCGCCCAGCACA 57.879 45.000 0.00 0.00 0.00 4.57
3619 4375 1.667236 TGATAAATCGCCCAGCACAG 58.333 50.000 0.00 0.00 0.00 3.66
3620 4376 1.209261 TGATAAATCGCCCAGCACAGA 59.791 47.619 0.00 0.00 0.00 3.41
3621 4377 2.158769 TGATAAATCGCCCAGCACAGAT 60.159 45.455 0.00 0.00 0.00 2.90
3622 4378 1.667236 TAAATCGCCCAGCACAGATG 58.333 50.000 0.00 0.00 0.00 2.90
3623 4379 0.035152 AAATCGCCCAGCACAGATGA 60.035 50.000 0.00 0.00 0.00 2.92
3624 4380 0.182061 AATCGCCCAGCACAGATGAT 59.818 50.000 0.00 0.00 0.00 2.45
3625 4381 0.182061 ATCGCCCAGCACAGATGATT 59.818 50.000 0.00 0.00 0.00 2.57
3626 4382 0.829990 TCGCCCAGCACAGATGATTA 59.170 50.000 0.00 0.00 0.00 1.75
3627 4383 0.940126 CGCCCAGCACAGATGATTAC 59.060 55.000 0.00 0.00 0.00 1.89
3628 4384 1.473965 CGCCCAGCACAGATGATTACT 60.474 52.381 0.00 0.00 0.00 2.24
3629 4385 2.648059 GCCCAGCACAGATGATTACTT 58.352 47.619 0.00 0.00 0.00 2.24
3630 4386 3.019564 GCCCAGCACAGATGATTACTTT 58.980 45.455 0.00 0.00 0.00 2.66
3631 4387 3.445096 GCCCAGCACAGATGATTACTTTT 59.555 43.478 0.00 0.00 0.00 2.27
3632 4388 4.082026 GCCCAGCACAGATGATTACTTTTT 60.082 41.667 0.00 0.00 0.00 1.94
3650 4406 2.413310 TTTCGATAAGAAGGTGCCCC 57.587 50.000 0.00 0.00 40.40 5.80
3651 4407 1.281419 TTCGATAAGAAGGTGCCCCA 58.719 50.000 0.00 0.00 34.26 4.96
3652 4408 0.539986 TCGATAAGAAGGTGCCCCAC 59.460 55.000 0.00 0.00 0.00 4.61
3665 4421 4.159244 GTGCCCCACCTTGTATATTACA 57.841 45.455 0.00 0.00 36.79 2.41
3666 4422 4.528920 GTGCCCCACCTTGTATATTACAA 58.471 43.478 0.64 0.64 45.66 2.41
3667 4423 5.137551 GTGCCCCACCTTGTATATTACAAT 58.862 41.667 0.92 0.00 46.51 2.71
3668 4424 5.240844 GTGCCCCACCTTGTATATTACAATC 59.759 44.000 0.92 0.00 46.51 2.67
3669 4425 5.103898 TGCCCCACCTTGTATATTACAATCA 60.104 40.000 0.92 0.00 46.51 2.57
3670 4426 5.473504 GCCCCACCTTGTATATTACAATCAG 59.526 44.000 0.92 0.00 46.51 2.90
3671 4427 6.690460 GCCCCACCTTGTATATTACAATCAGA 60.690 42.308 0.92 0.00 46.51 3.27
3672 4428 7.287061 CCCCACCTTGTATATTACAATCAGAA 58.713 38.462 0.92 0.00 46.51 3.02
3673 4429 7.777910 CCCCACCTTGTATATTACAATCAGAAA 59.222 37.037 0.92 0.00 46.51 2.52
3674 4430 9.354673 CCCACCTTGTATATTACAATCAGAAAT 57.645 33.333 0.92 0.00 46.51 2.17
3689 4445 8.636213 ACAATCAGAAATGAGCATTTTATAGGG 58.364 33.333 9.57 3.10 40.77 3.53
3690 4446 6.639632 TCAGAAATGAGCATTTTATAGGGC 57.360 37.500 9.57 0.00 40.77 5.19
3691 4447 5.536161 TCAGAAATGAGCATTTTATAGGGCC 59.464 40.000 9.57 0.00 40.77 5.80
3692 4448 5.537674 CAGAAATGAGCATTTTATAGGGCCT 59.462 40.000 12.58 12.58 40.77 5.19
3693 4449 5.537674 AGAAATGAGCATTTTATAGGGCCTG 59.462 40.000 18.53 0.00 40.77 4.85
3694 4450 3.951563 TGAGCATTTTATAGGGCCTGT 57.048 42.857 18.53 13.20 0.00 4.00
3695 4451 4.249638 TGAGCATTTTATAGGGCCTGTT 57.750 40.909 18.53 6.14 0.00 3.16
3696 4452 4.207165 TGAGCATTTTATAGGGCCTGTTC 58.793 43.478 18.53 6.44 0.00 3.18
3697 4453 3.214328 AGCATTTTATAGGGCCTGTTCG 58.786 45.455 18.53 0.00 0.00 3.95
3698 4454 2.293399 GCATTTTATAGGGCCTGTTCGG 59.707 50.000 18.53 0.51 0.00 4.30
3699 4455 3.815809 CATTTTATAGGGCCTGTTCGGA 58.184 45.455 18.53 0.00 33.16 4.55
3700 4456 4.204012 CATTTTATAGGGCCTGTTCGGAA 58.796 43.478 18.53 3.85 33.16 4.30
3701 4457 3.553828 TTTATAGGGCCTGTTCGGAAG 57.446 47.619 18.53 0.00 33.16 3.46
3702 4458 0.756903 TATAGGGCCTGTTCGGAAGC 59.243 55.000 18.53 0.00 33.16 3.86
3703 4459 0.983378 ATAGGGCCTGTTCGGAAGCT 60.983 55.000 18.53 0.00 33.16 3.74
3704 4460 1.614241 TAGGGCCTGTTCGGAAGCTC 61.614 60.000 18.53 0.00 33.16 4.09
3705 4461 2.815647 GGCCTGTTCGGAAGCTCG 60.816 66.667 0.00 0.00 33.16 5.03
3706 4462 3.491652 GCCTGTTCGGAAGCTCGC 61.492 66.667 0.00 0.00 33.16 5.03
3707 4463 2.815647 CCTGTTCGGAAGCTCGCC 60.816 66.667 0.00 0.00 33.16 5.54
3708 4464 2.048222 CTGTTCGGAAGCTCGCCA 60.048 61.111 6.41 0.00 0.00 5.69
3709 4465 2.048222 TGTTCGGAAGCTCGCCAG 60.048 61.111 6.41 0.23 0.00 4.85
3726 4482 2.742372 GCTCCCAGCTTTCGCGAA 60.742 61.111 19.38 19.38 42.32 4.70
3727 4483 2.109126 GCTCCCAGCTTTCGCGAAT 61.109 57.895 24.05 4.74 42.32 3.34
3728 4484 2.009888 CTCCCAGCTTTCGCGAATC 58.990 57.895 24.05 17.07 42.32 2.52
3729 4485 1.432270 CTCCCAGCTTTCGCGAATCC 61.432 60.000 24.05 16.08 42.32 3.01
3730 4486 2.703409 CCAGCTTTCGCGAATCCG 59.297 61.111 24.05 14.86 42.32 4.18
3740 4496 2.956964 CGAATCCGCGAGTGGAGC 60.957 66.667 8.23 5.15 42.45 4.70
3741 4497 2.496817 GAATCCGCGAGTGGAGCT 59.503 61.111 8.23 0.00 42.45 4.09
3742 4498 1.880340 GAATCCGCGAGTGGAGCTG 60.880 63.158 8.23 0.00 42.45 4.24
3743 4499 3.376935 AATCCGCGAGTGGAGCTGG 62.377 63.158 8.23 0.00 42.45 4.85
3748 4504 3.385384 CGAGTGGAGCTGGCCTGA 61.385 66.667 14.77 0.00 0.00 3.86
3749 4505 2.947532 CGAGTGGAGCTGGCCTGAA 61.948 63.158 14.77 0.00 0.00 3.02
3750 4506 1.376553 GAGTGGAGCTGGCCTGAAC 60.377 63.158 14.77 5.91 0.00 3.18
3751 4507 2.743928 GTGGAGCTGGCCTGAACG 60.744 66.667 14.77 0.00 0.00 3.95
3752 4508 4.020617 TGGAGCTGGCCTGAACGG 62.021 66.667 14.77 0.00 0.00 4.44
3761 4517 2.747855 CCTGAACGGCCTGGCTTC 60.748 66.667 19.68 15.50 0.00 3.86
3762 4518 2.032528 CTGAACGGCCTGGCTTCA 59.967 61.111 19.68 19.13 0.00 3.02
3763 4519 2.032528 TGAACGGCCTGGCTTCAG 59.967 61.111 19.68 10.20 38.21 3.02
3782 4538 2.984871 GAAGCTGGCTTCCGAGATC 58.015 57.895 20.75 0.00 44.76 2.75
3783 4539 0.873743 GAAGCTGGCTTCCGAGATCG 60.874 60.000 20.75 0.00 44.76 3.69
3784 4540 1.323271 AAGCTGGCTTCCGAGATCGA 61.323 55.000 3.31 0.00 43.02 3.59
3785 4541 1.141881 GCTGGCTTCCGAGATCGAA 59.858 57.895 3.31 0.00 43.02 3.71
3786 4542 1.148759 GCTGGCTTCCGAGATCGAAC 61.149 60.000 3.31 0.00 43.02 3.95
3787 4543 0.528684 CTGGCTTCCGAGATCGAACC 60.529 60.000 3.31 0.36 43.02 3.62
3788 4544 1.254975 TGGCTTCCGAGATCGAACCA 61.255 55.000 3.31 2.95 43.02 3.67
3789 4545 0.108329 GGCTTCCGAGATCGAACCAA 60.108 55.000 3.31 0.00 43.02 3.67
3790 4546 1.674817 GGCTTCCGAGATCGAACCAAA 60.675 52.381 3.31 0.00 43.02 3.28
3791 4547 2.073816 GCTTCCGAGATCGAACCAAAA 58.926 47.619 3.31 0.00 43.02 2.44
3792 4548 2.482721 GCTTCCGAGATCGAACCAAAAA 59.517 45.455 3.31 0.00 43.02 1.94
3793 4549 3.667166 GCTTCCGAGATCGAACCAAAAAC 60.667 47.826 3.31 0.00 43.02 2.43
3794 4550 2.419667 TCCGAGATCGAACCAAAAACC 58.580 47.619 3.31 0.00 43.02 3.27
3795 4551 2.147958 CCGAGATCGAACCAAAAACCA 58.852 47.619 3.31 0.00 43.02 3.67
3796 4552 2.095919 CCGAGATCGAACCAAAAACCAC 60.096 50.000 3.31 0.00 43.02 4.16
3797 4553 2.411031 CGAGATCGAACCAAAAACCACG 60.411 50.000 0.00 0.00 43.02 4.94
3798 4554 2.546789 GAGATCGAACCAAAAACCACGT 59.453 45.455 0.00 0.00 0.00 4.49
3799 4555 3.731089 AGATCGAACCAAAAACCACGTA 58.269 40.909 0.00 0.00 0.00 3.57
3800 4556 3.495753 AGATCGAACCAAAAACCACGTAC 59.504 43.478 0.00 0.00 0.00 3.67
3801 4557 2.625737 TCGAACCAAAAACCACGTACA 58.374 42.857 0.00 0.00 0.00 2.90
3802 4558 3.005554 TCGAACCAAAAACCACGTACAA 58.994 40.909 0.00 0.00 0.00 2.41
3803 4559 3.063725 TCGAACCAAAAACCACGTACAAG 59.936 43.478 0.00 0.00 0.00 3.16
3804 4560 3.697982 GAACCAAAAACCACGTACAAGG 58.302 45.455 0.00 0.00 0.00 3.61
3805 4561 2.725637 ACCAAAAACCACGTACAAGGT 58.274 42.857 0.54 0.54 40.61 3.50
3806 4562 2.684374 ACCAAAAACCACGTACAAGGTC 59.316 45.455 6.68 0.00 37.07 3.85
3807 4563 2.286536 CCAAAAACCACGTACAAGGTCG 60.287 50.000 6.68 0.00 37.07 4.79
3808 4564 0.939419 AAAACCACGTACAAGGTCGC 59.061 50.000 6.68 0.00 37.07 5.19
3809 4565 1.216941 AAACCACGTACAAGGTCGCG 61.217 55.000 0.00 0.00 37.07 5.87
3810 4566 3.475774 CCACGTACAAGGTCGCGC 61.476 66.667 0.00 0.00 0.00 6.86
3811 4567 3.475774 CACGTACAAGGTCGCGCC 61.476 66.667 0.00 6.31 37.58 6.53
3820 4576 3.423154 GGTCGCGCCTTGTCCTTG 61.423 66.667 0.00 0.00 0.00 3.61
3821 4577 2.357034 GTCGCGCCTTGTCCTTGA 60.357 61.111 0.00 0.00 0.00 3.02
3822 4578 1.959226 GTCGCGCCTTGTCCTTGAA 60.959 57.895 0.00 0.00 0.00 2.69
3823 4579 1.003839 TCGCGCCTTGTCCTTGAAT 60.004 52.632 0.00 0.00 0.00 2.57
3824 4580 0.605319 TCGCGCCTTGTCCTTGAATT 60.605 50.000 0.00 0.00 0.00 2.17
3825 4581 0.240945 CGCGCCTTGTCCTTGAATTT 59.759 50.000 0.00 0.00 0.00 1.82
3826 4582 1.701704 GCGCCTTGTCCTTGAATTTG 58.298 50.000 0.00 0.00 0.00 2.32
3827 4583 1.000274 GCGCCTTGTCCTTGAATTTGT 60.000 47.619 0.00 0.00 0.00 2.83
3828 4584 2.545742 GCGCCTTGTCCTTGAATTTGTT 60.546 45.455 0.00 0.00 0.00 2.83
3829 4585 3.052036 CGCCTTGTCCTTGAATTTGTTG 58.948 45.455 0.00 0.00 0.00 3.33
3830 4586 3.392882 GCCTTGTCCTTGAATTTGTTGG 58.607 45.455 0.00 0.00 0.00 3.77
3831 4587 3.069443 GCCTTGTCCTTGAATTTGTTGGA 59.931 43.478 0.00 0.00 0.00 3.53
3832 4588 4.262592 GCCTTGTCCTTGAATTTGTTGGAT 60.263 41.667 0.00 0.00 0.00 3.41
3833 4589 5.742838 GCCTTGTCCTTGAATTTGTTGGATT 60.743 40.000 0.00 0.00 0.00 3.01
3834 4590 5.928264 CCTTGTCCTTGAATTTGTTGGATTC 59.072 40.000 0.00 0.00 34.78 2.52
3835 4591 6.462768 CCTTGTCCTTGAATTTGTTGGATTCA 60.463 38.462 0.00 0.00 40.65 2.57
3836 4592 6.088016 TGTCCTTGAATTTGTTGGATTCAG 57.912 37.500 0.00 0.00 42.54 3.02
3837 4593 5.832595 TGTCCTTGAATTTGTTGGATTCAGA 59.167 36.000 0.00 0.00 42.54 3.27
3838 4594 6.323482 TGTCCTTGAATTTGTTGGATTCAGAA 59.677 34.615 0.00 0.00 42.54 3.02
3839 4595 6.865205 GTCCTTGAATTTGTTGGATTCAGAAG 59.135 38.462 0.00 0.00 42.54 2.85
3840 4596 6.777091 TCCTTGAATTTGTTGGATTCAGAAGA 59.223 34.615 0.00 0.00 42.54 2.87
3841 4597 7.040201 TCCTTGAATTTGTTGGATTCAGAAGAG 60.040 37.037 0.00 0.00 42.54 2.85
3842 4598 6.579666 TGAATTTGTTGGATTCAGAAGAGG 57.420 37.500 0.00 0.00 38.29 3.69
3843 4599 5.477984 TGAATTTGTTGGATTCAGAAGAGGG 59.522 40.000 0.00 0.00 38.29 4.30
3844 4600 2.496899 TGTTGGATTCAGAAGAGGGC 57.503 50.000 0.00 0.00 0.00 5.19
3845 4601 1.339055 TGTTGGATTCAGAAGAGGGCG 60.339 52.381 0.00 0.00 0.00 6.13
3846 4602 1.066143 GTTGGATTCAGAAGAGGGCGA 60.066 52.381 0.00 0.00 0.00 5.54
3847 4603 1.275666 TGGATTCAGAAGAGGGCGAA 58.724 50.000 0.00 0.00 0.00 4.70
3848 4604 1.208052 TGGATTCAGAAGAGGGCGAAG 59.792 52.381 0.00 0.00 0.00 3.79
3893 4649 9.620259 ATGAAAATTTAGACTGGAATCTAGGAC 57.380 33.333 0.00 0.00 32.78 3.85
3894 4650 8.047310 TGAAAATTTAGACTGGAATCTAGGACC 58.953 37.037 0.00 0.00 32.78 4.46
3895 4651 6.502074 AATTTAGACTGGAATCTAGGACCC 57.498 41.667 0.00 0.00 32.78 4.46
3896 4652 4.620086 TTAGACTGGAATCTAGGACCCA 57.380 45.455 0.00 0.00 32.78 4.51
3897 4653 3.715648 AGACTGGAATCTAGGACCCAT 57.284 47.619 0.00 0.00 0.00 4.00
3898 4654 4.014273 AGACTGGAATCTAGGACCCATT 57.986 45.455 0.00 0.00 0.00 3.16
3899 4655 3.713764 AGACTGGAATCTAGGACCCATTG 59.286 47.826 0.00 0.00 0.00 2.82
3900 4656 2.780010 ACTGGAATCTAGGACCCATTGG 59.220 50.000 0.00 0.00 37.80 3.16
3901 4657 1.494721 TGGAATCTAGGACCCATTGGC 59.505 52.381 0.00 0.00 33.59 4.52
3902 4658 1.777272 GGAATCTAGGACCCATTGGCT 59.223 52.381 0.00 0.00 33.59 4.75
3903 4659 2.175715 GGAATCTAGGACCCATTGGCTT 59.824 50.000 0.00 0.00 33.59 4.35
3904 4660 3.394606 GGAATCTAGGACCCATTGGCTTA 59.605 47.826 0.00 0.00 33.59 3.09
3905 4661 4.390264 GAATCTAGGACCCATTGGCTTAC 58.610 47.826 0.00 0.00 33.59 2.34
3996 4757 4.825085 TCCACCAAGGTCAAAGTTTACATC 59.175 41.667 0.00 0.00 39.02 3.06
4012 4773 2.365582 ACATCCGGTTACAATTGAGCC 58.634 47.619 13.59 9.70 0.00 4.70
4031 4793 1.553704 CCCTCAACCTTAACGCTACCT 59.446 52.381 0.00 0.00 0.00 3.08
4059 4821 1.417890 CCCGATCAGCCTTGGTCTAAT 59.582 52.381 0.00 0.00 31.98 1.73
4087 4849 1.133668 GCCATCCCACCTAGAAAGCAT 60.134 52.381 0.00 0.00 0.00 3.79
4089 4851 2.173356 CCATCCCACCTAGAAAGCATCA 59.827 50.000 0.00 0.00 0.00 3.07
4098 4860 4.287067 ACCTAGAAAGCATCAACAGGAAGA 59.713 41.667 0.00 0.00 31.59 2.87
4125 4887 0.310543 GTCGTGCTTGAACATGCCAA 59.689 50.000 9.52 0.00 0.00 4.52
4148 4910 2.354343 GCCCAAGCTCTGCCTTCT 59.646 61.111 0.00 0.00 35.50 2.85
4289 5051 3.532155 GTCCTCGGAGGCGAGCAT 61.532 66.667 19.48 0.00 34.61 3.79
4312 5074 1.154093 TGAACCAGTCGACGATCGC 60.154 57.895 16.60 7.26 40.21 4.58
4344 5106 2.124151 GCATCCAATCCGGCCTGT 60.124 61.111 0.00 0.00 33.14 4.00
4345 5107 1.754234 GCATCCAATCCGGCCTGTT 60.754 57.895 0.00 0.00 33.14 3.16
4442 5204 1.660560 CCTGATCGCAAAAGGGGCAG 61.661 60.000 0.00 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 52 0.678366 ATATCGATCTCGGCCTCGCT 60.678 55.000 0.00 0.72 40.29 4.93
163 172 4.760047 GAGTGGTGGCGCATCCGT 62.760 66.667 10.83 1.96 37.80 4.69
174 183 1.242665 GGAGAAGGACGACGAGTGGT 61.243 60.000 0.00 0.00 0.00 4.16
243 252 2.742372 GGCGCCACAATGACGAGT 60.742 61.111 24.80 0.00 0.00 4.18
299 308 4.796231 GATGCGGTCACGGCTCGT 62.796 66.667 9.00 0.00 42.36 4.18
302 311 2.852495 ATTTCGATGCGGTCACGGCT 62.852 55.000 9.00 0.00 41.36 5.52
365 374 1.003355 CAAGCAGGAGCCGGAGAAA 60.003 57.895 5.05 0.00 43.56 2.52
367 376 2.283894 TCAAGCAGGAGCCGGAGA 60.284 61.111 5.05 0.00 43.56 3.71
469 500 2.892640 CCGCGAGATCTTCCCACA 59.107 61.111 8.23 0.00 0.00 4.17
500 531 1.604308 TACGCCCTTCTCGGTCACA 60.604 57.895 0.00 0.00 0.00 3.58
504 535 4.125695 GCGTACGCCCTTCTCGGT 62.126 66.667 29.51 0.00 34.56 4.69
573 604 0.912486 ACAAATAGGGGCTTCGAGCT 59.088 50.000 6.78 0.00 41.99 4.09
580 611 1.285078 GGAAGTGGACAAATAGGGGCT 59.715 52.381 0.00 0.00 0.00 5.19
590 621 3.319198 GGGGCGAGGAAGTGGACA 61.319 66.667 0.00 0.00 0.00 4.02
643 674 1.595993 GAGTAGCGACCCAGAGCACA 61.596 60.000 0.00 0.00 35.48 4.57
650 681 2.036098 TTCGGGAGTAGCGACCCA 59.964 61.111 0.00 0.00 45.83 4.51
719 803 6.000219 CCAATTCCATCCTCATATTTCTCGT 59.000 40.000 0.00 0.00 0.00 4.18
728 813 5.364735 GTCAATTTCCCAATTCCATCCTCAT 59.635 40.000 0.00 0.00 29.41 2.90
734 819 4.599041 TCTCGTCAATTTCCCAATTCCAT 58.401 39.130 0.00 0.00 29.41 3.41
735 820 4.027674 TCTCGTCAATTTCCCAATTCCA 57.972 40.909 0.00 0.00 29.41 3.53
736 821 5.385509 TTTCTCGTCAATTTCCCAATTCC 57.614 39.130 0.00 0.00 29.41 3.01
737 822 8.405531 TCATATTTCTCGTCAATTTCCCAATTC 58.594 33.333 0.00 0.00 29.41 2.17
738 823 8.292444 TCATATTTCTCGTCAATTTCCCAATT 57.708 30.769 0.00 0.00 32.36 2.32
739 824 7.013655 CCTCATATTTCTCGTCAATTTCCCAAT 59.986 37.037 0.00 0.00 0.00 3.16
740 825 6.318648 CCTCATATTTCTCGTCAATTTCCCAA 59.681 38.462 0.00 0.00 0.00 4.12
741 826 5.822519 CCTCATATTTCTCGTCAATTTCCCA 59.177 40.000 0.00 0.00 0.00 4.37
742 827 6.055588 TCCTCATATTTCTCGTCAATTTCCC 58.944 40.000 0.00 0.00 0.00 3.97
743 828 7.308229 CCATCCTCATATTTCTCGTCAATTTCC 60.308 40.741 0.00 0.00 0.00 3.13
744 829 7.442364 TCCATCCTCATATTTCTCGTCAATTTC 59.558 37.037 0.00 0.00 0.00 2.17
745 830 7.282585 TCCATCCTCATATTTCTCGTCAATTT 58.717 34.615 0.00 0.00 0.00 1.82
746 831 6.830912 TCCATCCTCATATTTCTCGTCAATT 58.169 36.000 0.00 0.00 0.00 2.32
747 832 6.425210 TCCATCCTCATATTTCTCGTCAAT 57.575 37.500 0.00 0.00 0.00 2.57
748 833 5.869649 TCCATCCTCATATTTCTCGTCAA 57.130 39.130 0.00 0.00 0.00 3.18
749 834 5.869649 TTCCATCCTCATATTTCTCGTCA 57.130 39.130 0.00 0.00 0.00 4.35
750 835 6.148480 CCAATTCCATCCTCATATTTCTCGTC 59.852 42.308 0.00 0.00 0.00 4.20
751 836 6.000219 CCAATTCCATCCTCATATTTCTCGT 59.000 40.000 0.00 0.00 0.00 4.18
752 837 5.413833 CCCAATTCCATCCTCATATTTCTCG 59.586 44.000 0.00 0.00 0.00 4.04
753 838 6.546484 TCCCAATTCCATCCTCATATTTCTC 58.454 40.000 0.00 0.00 0.00 2.87
754 839 6.535161 TCCCAATTCCATCCTCATATTTCT 57.465 37.500 0.00 0.00 0.00 2.52
755 840 7.601705 TTTCCCAATTCCATCCTCATATTTC 57.398 36.000 0.00 0.00 0.00 2.17
756 841 8.434392 CAATTTCCCAATTCCATCCTCATATTT 58.566 33.333 0.00 0.00 29.41 1.40
757 842 7.473795 GCAATTTCCCAATTCCATCCTCATATT 60.474 37.037 0.00 0.00 29.41 1.28
758 843 6.013984 GCAATTTCCCAATTCCATCCTCATAT 60.014 38.462 0.00 0.00 29.41 1.78
759 844 5.305128 GCAATTTCCCAATTCCATCCTCATA 59.695 40.000 0.00 0.00 29.41 2.15
760 845 4.102054 GCAATTTCCCAATTCCATCCTCAT 59.898 41.667 0.00 0.00 29.41 2.90
761 846 3.451902 GCAATTTCCCAATTCCATCCTCA 59.548 43.478 0.00 0.00 29.41 3.86
762 847 3.491447 CGCAATTTCCCAATTCCATCCTC 60.491 47.826 0.00 0.00 29.41 3.71
763 848 2.431782 CGCAATTTCCCAATTCCATCCT 59.568 45.455 0.00 0.00 29.41 3.24
764 849 2.430332 TCGCAATTTCCCAATTCCATCC 59.570 45.455 0.00 0.00 29.41 3.51
765 850 3.447742 GTCGCAATTTCCCAATTCCATC 58.552 45.455 0.00 0.00 29.41 3.51
767 852 1.201181 CGTCGCAATTTCCCAATTCCA 59.799 47.619 0.00 0.00 29.41 3.53
772 857 1.153353 GTCTCGTCGCAATTTCCCAA 58.847 50.000 0.00 0.00 0.00 4.12
798 883 1.293153 AGTAGAAACCCTATCCCCCGT 59.707 52.381 0.00 0.00 0.00 5.28
829 916 9.923143 CAAACCAGTATATCTATGGATTTACGA 57.077 33.333 11.94 0.00 39.59 3.43
832 919 8.611257 CCCCAAACCAGTATATCTATGGATTTA 58.389 37.037 0.00 0.00 37.54 1.40
836 923 4.849810 CCCCCAAACCAGTATATCTATGGA 59.150 45.833 7.56 0.00 37.54 3.41
861 956 2.912025 CGCAACTTGCAACCCCCT 60.912 61.111 14.10 0.00 45.36 4.79
901 999 3.512329 TCAAAACAGAGGCCGTATACTCA 59.488 43.478 0.00 0.00 36.20 3.41
912 1010 5.010922 TCCAATTTCCACATCAAAACAGAGG 59.989 40.000 0.00 0.00 0.00 3.69
920 1018 4.023279 CACTCGTTCCAATTTCCACATCAA 60.023 41.667 0.00 0.00 0.00 2.57
924 1022 1.606668 GCACTCGTTCCAATTTCCACA 59.393 47.619 0.00 0.00 0.00 4.17
925 1023 1.399727 CGCACTCGTTCCAATTTCCAC 60.400 52.381 0.00 0.00 0.00 4.02
926 1024 0.871722 CGCACTCGTTCCAATTTCCA 59.128 50.000 0.00 0.00 0.00 3.53
950 1048 1.826054 CCCGCAATATTCCGGCCAA 60.826 57.895 12.58 0.00 43.05 4.52
952 1050 1.792118 GAACCCGCAATATTCCGGCC 61.792 60.000 12.58 0.00 43.05 6.13
974 1072 5.747342 ACTCTAGTAGACCCTGTAAGAGTG 58.253 45.833 0.00 0.00 40.38 3.51
978 1076 4.951094 AGCAACTCTAGTAGACCCTGTAAG 59.049 45.833 0.00 0.00 0.00 2.34
990 1088 0.322277 TCCGTCCGAGCAACTCTAGT 60.322 55.000 0.00 0.00 0.00 2.57
1185 1288 3.663815 GACAGAGGAGGCTCGGGGA 62.664 68.421 8.69 0.00 0.00 4.81
1191 1294 2.366570 GGAGGGACAGAGGAGGCT 59.633 66.667 0.00 0.00 0.00 4.58
1368 1479 0.101399 CGTGAACATCTCCTCTCCGG 59.899 60.000 0.00 0.00 0.00 5.14
1499 1612 2.702592 ATAACAATCGCGGGAGGAAA 57.297 45.000 6.13 0.00 0.00 3.13
1629 1742 3.525800 AATTTGACCCTGGTGTAAGCT 57.474 42.857 0.00 0.00 33.76 3.74
1634 1747 1.963515 GCAGAAATTTGACCCTGGTGT 59.036 47.619 0.00 0.00 0.00 4.16
1674 1787 4.571919 TCAGTTCCACCTAAACCAATACG 58.428 43.478 0.00 0.00 0.00 3.06
1707 1821 7.060600 TCTACAATAATTGCAACTGAACTCG 57.939 36.000 0.00 0.00 0.00 4.18
1719 1833 7.962373 TGCTGACAACGATTTCTACAATAATTG 59.038 33.333 0.00 0.00 0.00 2.32
1726 1840 4.251543 TCTGCTGACAACGATTTCTACA 57.748 40.909 0.00 0.00 0.00 2.74
1756 1870 2.961522 GGCGACGAAATTCAGTTTCA 57.038 45.000 0.00 0.00 45.24 2.69
1802 1916 9.005777 AGTACTTCACTAAGTTGTTTGTTTTGA 57.994 29.630 0.00 0.00 43.60 2.69
1869 1983 6.590234 ACCCCTTTTGTTTAGCTTAGAATG 57.410 37.500 0.00 0.00 0.00 2.67
1964 2078 5.597182 AGTTGGAGCTATCTTCGTACCATAA 59.403 40.000 0.00 0.00 0.00 1.90
1972 2086 3.304559 CGACAAAGTTGGAGCTATCTTCG 59.695 47.826 0.00 0.00 0.00 3.79
1985 2099 2.430248 AGGGTTTCACCGACAAAGTT 57.570 45.000 0.00 0.00 39.83 2.66
2072 2193 3.327757 TGCAACAATCCTCTCCTTGTACT 59.672 43.478 0.00 0.00 34.61 2.73
2085 2206 6.624526 CGAAATTTGACAAGTTTGCAACAATC 59.375 34.615 12.80 0.00 0.00 2.67
2162 2283 4.635324 CAGCAATTGACCAAAACAAAAGGT 59.365 37.500 10.34 0.00 38.63 3.50
2201 2322 2.861147 AGGAAAGTACCAGAACTGCC 57.139 50.000 0.00 0.00 0.00 4.85
2202 2323 5.488341 TGAATAGGAAAGTACCAGAACTGC 58.512 41.667 0.00 0.00 0.00 4.40
2203 2324 7.824289 TCATTGAATAGGAAAGTACCAGAACTG 59.176 37.037 0.00 0.00 0.00 3.16
2204 2325 7.918076 TCATTGAATAGGAAAGTACCAGAACT 58.082 34.615 0.00 0.00 0.00 3.01
2319 2440 6.969043 TGAATTACATATTCCACCAACTCCT 58.031 36.000 0.00 0.00 0.00 3.69
2322 2443 7.615365 ACACATGAATTACATATTCCACCAACT 59.385 33.333 0.00 0.00 37.46 3.16
2387 2508 7.703621 GTGTCTTGCATGCTTCACAATAATAAT 59.296 33.333 20.33 0.00 0.00 1.28
2438 2559 7.908193 AATAAAATGACCGCGTCAAAATATC 57.092 32.000 13.81 0.00 45.96 1.63
2439 2560 8.591312 CAAAATAAAATGACCGCGTCAAAATAT 58.409 29.630 13.81 9.90 45.96 1.28
2441 2562 6.422400 ACAAAATAAAATGACCGCGTCAAAAT 59.578 30.769 13.81 6.95 45.96 1.82
2445 2566 4.491234 ACAAAATAAAATGACCGCGTCA 57.509 36.364 4.92 9.67 46.90 4.35
2470 2591 3.303593 GCATTTGCTGGATCTACACGATG 60.304 47.826 0.00 0.00 38.21 3.84
2562 2683 4.556233 TCATAGGTTCAGAAACACTCACG 58.444 43.478 0.00 0.00 37.10 4.35
2594 2715 7.683437 AAACAAAGAAGGCCTATACTGTTAC 57.317 36.000 18.37 0.18 0.00 2.50
2642 2764 7.068716 AGGAAATTTACATGCATAGGAAGGAAC 59.931 37.037 0.00 0.00 0.00 3.62
2716 2838 3.116174 CTCCTTTAGCCCTACTTCCCTT 58.884 50.000 0.00 0.00 0.00 3.95
2717 2839 2.318207 TCTCCTTTAGCCCTACTTCCCT 59.682 50.000 0.00 0.00 0.00 4.20
2755 2877 1.547901 GGTGCCCTGGCTAAATATCCC 60.548 57.143 9.97 0.00 42.51 3.85
2813 2935 8.791675 TGACATAAAGACTGATATGTTTGCAAA 58.208 29.630 8.05 8.05 41.53 3.68
2887 3468 1.130373 CGTAATTCACCTGCACGCAAT 59.870 47.619 0.00 0.00 0.00 3.56
2939 3520 7.746475 GGTTTCAATATGTCTTTCTTTGTCGAG 59.254 37.037 0.00 0.00 0.00 4.04
2951 3532 6.235231 AGTACATCCGGTTTCAATATGTCT 57.765 37.500 0.00 0.00 33.15 3.41
2954 3535 7.214381 TCCTAAGTACATCCGGTTTCAATATG 58.786 38.462 0.00 0.00 0.00 1.78
3080 3661 1.945394 CATGCCTTACCATCTGCAGTC 59.055 52.381 14.67 0.00 37.12 3.51
3139 3720 4.563580 GGACAGAGAATTGTAACTCCTGCA 60.564 45.833 0.00 0.00 34.13 4.41
3157 3738 5.587388 ATTGTGCTTGGATAAATGGACAG 57.413 39.130 0.00 0.00 32.80 3.51
3213 3794 7.726216 TGAACTTACTGATTTCTCACAGAGAA 58.274 34.615 5.41 5.41 45.45 2.87
3214 3795 7.290110 TGAACTTACTGATTTCTCACAGAGA 57.710 36.000 0.00 0.00 36.86 3.10
3352 4056 5.480073 GTGGATATCTACTTGAGGCAGAGAT 59.520 44.000 11.70 0.00 0.00 2.75
3357 4061 4.901250 TCATGTGGATATCTACTTGAGGCA 59.099 41.667 24.79 10.37 36.88 4.75
3360 4064 6.507900 ACGTTCATGTGGATATCTACTTGAG 58.492 40.000 26.10 20.89 40.57 3.02
3390 4094 2.941720 CCTCATTTAGCACTTCAGCTCC 59.058 50.000 0.00 0.00 45.26 4.70
3443 4199 6.553100 ACTTGGGAGGATGTGAAAATTAACAA 59.447 34.615 0.00 0.00 0.00 2.83
3485 4241 3.684305 TGGAGCGACTGATTACATGTTTG 59.316 43.478 2.30 0.00 0.00 2.93
3510 4266 5.711506 TCTCCCGTAATCTAGTTGTTGTGTA 59.288 40.000 0.00 0.00 0.00 2.90
3511 4267 4.525487 TCTCCCGTAATCTAGTTGTTGTGT 59.475 41.667 0.00 0.00 0.00 3.72
3513 4269 4.159879 CCTCTCCCGTAATCTAGTTGTTGT 59.840 45.833 0.00 0.00 0.00 3.32
3514 4270 4.401519 TCCTCTCCCGTAATCTAGTTGTTG 59.598 45.833 0.00 0.00 0.00 3.33
3515 4271 4.607239 TCCTCTCCCGTAATCTAGTTGTT 58.393 43.478 0.00 0.00 0.00 2.83
3516 4272 4.246712 TCCTCTCCCGTAATCTAGTTGT 57.753 45.455 0.00 0.00 0.00 3.32
3517 4273 5.593679 TTTCCTCTCCCGTAATCTAGTTG 57.406 43.478 0.00 0.00 0.00 3.16
3518 4274 7.471679 GCTTATTTCCTCTCCCGTAATCTAGTT 60.472 40.741 0.00 0.00 0.00 2.24
3519 4275 6.015265 GCTTATTTCCTCTCCCGTAATCTAGT 60.015 42.308 0.00 0.00 0.00 2.57
3520 4276 6.209788 AGCTTATTTCCTCTCCCGTAATCTAG 59.790 42.308 0.00 0.00 0.00 2.43
3521 4277 6.015350 CAGCTTATTTCCTCTCCCGTAATCTA 60.015 42.308 0.00 0.00 0.00 1.98
3522 4278 4.902448 AGCTTATTTCCTCTCCCGTAATCT 59.098 41.667 0.00 0.00 0.00 2.40
3523 4279 4.991687 CAGCTTATTTCCTCTCCCGTAATC 59.008 45.833 0.00 0.00 0.00 1.75
3524 4280 4.409247 ACAGCTTATTTCCTCTCCCGTAAT 59.591 41.667 0.00 0.00 0.00 1.89
3525 4281 3.773119 ACAGCTTATTTCCTCTCCCGTAA 59.227 43.478 0.00 0.00 0.00 3.18
3526 4282 3.132289 CACAGCTTATTTCCTCTCCCGTA 59.868 47.826 0.00 0.00 0.00 4.02
3527 4283 2.093447 CACAGCTTATTTCCTCTCCCGT 60.093 50.000 0.00 0.00 0.00 5.28
3528 4284 2.093447 ACACAGCTTATTTCCTCTCCCG 60.093 50.000 0.00 0.00 0.00 5.14
3529 4285 3.274288 CACACAGCTTATTTCCTCTCCC 58.726 50.000 0.00 0.00 0.00 4.30
3530 4286 2.680339 GCACACAGCTTATTTCCTCTCC 59.320 50.000 0.00 0.00 41.15 3.71
3531 4287 3.338249 TGCACACAGCTTATTTCCTCTC 58.662 45.455 0.00 0.00 45.94 3.20
3532 4288 3.423539 TGCACACAGCTTATTTCCTCT 57.576 42.857 0.00 0.00 45.94 3.69
3533 4289 4.503741 TTTGCACACAGCTTATTTCCTC 57.496 40.909 0.00 0.00 45.94 3.71
3534 4290 4.523943 TCATTTGCACACAGCTTATTTCCT 59.476 37.500 0.00 0.00 45.94 3.36
3535 4291 4.808558 TCATTTGCACACAGCTTATTTCC 58.191 39.130 0.00 0.00 45.94 3.13
3536 4292 5.290158 CCATCATTTGCACACAGCTTATTTC 59.710 40.000 0.00 0.00 45.94 2.17
3537 4293 5.172934 CCATCATTTGCACACAGCTTATTT 58.827 37.500 0.00 0.00 45.94 1.40
3538 4294 4.382254 CCCATCATTTGCACACAGCTTATT 60.382 41.667 0.00 0.00 45.94 1.40
3539 4295 3.131577 CCCATCATTTGCACACAGCTTAT 59.868 43.478 0.00 0.00 45.94 1.73
3540 4296 2.492881 CCCATCATTTGCACACAGCTTA 59.507 45.455 0.00 0.00 45.94 3.09
3541 4297 1.274167 CCCATCATTTGCACACAGCTT 59.726 47.619 0.00 0.00 45.94 3.74
3542 4298 0.892755 CCCATCATTTGCACACAGCT 59.107 50.000 0.00 0.00 45.94 4.24
3543 4299 0.604578 ACCCATCATTTGCACACAGC 59.395 50.000 0.00 0.00 45.96 4.40
3544 4300 4.487948 CTTAACCCATCATTTGCACACAG 58.512 43.478 0.00 0.00 0.00 3.66
3545 4301 3.257873 CCTTAACCCATCATTTGCACACA 59.742 43.478 0.00 0.00 0.00 3.72
3546 4302 3.509575 TCCTTAACCCATCATTTGCACAC 59.490 43.478 0.00 0.00 0.00 3.82
3547 4303 3.772387 TCCTTAACCCATCATTTGCACA 58.228 40.909 0.00 0.00 0.00 4.57
3548 4304 4.799564 TTCCTTAACCCATCATTTGCAC 57.200 40.909 0.00 0.00 0.00 4.57
3549 4305 8.774546 TTATATTCCTTAACCCATCATTTGCA 57.225 30.769 0.00 0.00 0.00 4.08
3550 4306 8.860088 ACTTATATTCCTTAACCCATCATTTGC 58.140 33.333 0.00 0.00 0.00 3.68
3585 4341 6.373779 CGATTTATCAAAGCACAGTTCTTGT 58.626 36.000 0.00 0.00 41.94 3.16
3586 4342 5.284660 GCGATTTATCAAAGCACAGTTCTTG 59.715 40.000 0.00 0.00 0.00 3.02
3587 4343 5.393962 GCGATTTATCAAAGCACAGTTCTT 58.606 37.500 0.00 0.00 0.00 2.52
3588 4344 4.142600 GGCGATTTATCAAAGCACAGTTCT 60.143 41.667 0.00 0.00 0.00 3.01
3589 4345 4.098416 GGCGATTTATCAAAGCACAGTTC 58.902 43.478 0.00 0.00 0.00 3.01
3590 4346 3.119495 GGGCGATTTATCAAAGCACAGTT 60.119 43.478 0.00 0.00 0.00 3.16
3591 4347 2.423538 GGGCGATTTATCAAAGCACAGT 59.576 45.455 0.00 0.00 0.00 3.55
3592 4348 2.423185 TGGGCGATTTATCAAAGCACAG 59.577 45.455 0.00 0.00 36.20 3.66
3593 4349 2.423185 CTGGGCGATTTATCAAAGCACA 59.577 45.455 0.00 0.00 39.08 4.57
3594 4350 2.796032 GCTGGGCGATTTATCAAAGCAC 60.796 50.000 0.00 0.00 0.00 4.40
3595 4351 1.405105 GCTGGGCGATTTATCAAAGCA 59.595 47.619 0.00 0.00 0.00 3.91
3596 4352 1.405105 TGCTGGGCGATTTATCAAAGC 59.595 47.619 0.00 0.00 0.00 3.51
3597 4353 2.423185 TGTGCTGGGCGATTTATCAAAG 59.577 45.455 0.00 0.00 0.00 2.77
3598 4354 2.423185 CTGTGCTGGGCGATTTATCAAA 59.577 45.455 0.00 0.00 0.00 2.69
3599 4355 2.016318 CTGTGCTGGGCGATTTATCAA 58.984 47.619 0.00 0.00 0.00 2.57
3600 4356 1.209261 TCTGTGCTGGGCGATTTATCA 59.791 47.619 0.00 0.00 0.00 2.15
3601 4357 1.953559 TCTGTGCTGGGCGATTTATC 58.046 50.000 0.00 0.00 0.00 1.75
3602 4358 2.158769 TCATCTGTGCTGGGCGATTTAT 60.159 45.455 0.00 0.00 0.00 1.40
3603 4359 1.209261 TCATCTGTGCTGGGCGATTTA 59.791 47.619 0.00 0.00 0.00 1.40
3604 4360 0.035152 TCATCTGTGCTGGGCGATTT 60.035 50.000 0.00 0.00 0.00 2.17
3605 4361 0.182061 ATCATCTGTGCTGGGCGATT 59.818 50.000 0.00 0.00 0.00 3.34
3606 4362 0.182061 AATCATCTGTGCTGGGCGAT 59.818 50.000 0.00 0.00 0.00 4.58
3607 4363 0.829990 TAATCATCTGTGCTGGGCGA 59.170 50.000 0.00 0.00 0.00 5.54
3608 4364 0.940126 GTAATCATCTGTGCTGGGCG 59.060 55.000 0.00 0.00 0.00 6.13
3609 4365 2.338577 AGTAATCATCTGTGCTGGGC 57.661 50.000 0.00 0.00 0.00 5.36
3610 4366 5.649782 AAAAAGTAATCATCTGTGCTGGG 57.350 39.130 0.00 0.00 0.00 4.45
3643 4399 3.117813 TGTAATATACAAGGTGGGGCACC 60.118 47.826 0.00 0.00 43.26 5.01
3644 4400 4.159244 TGTAATATACAAGGTGGGGCAC 57.841 45.455 0.00 0.00 35.38 5.01
3645 4401 4.864483 TTGTAATATACAAGGTGGGGCA 57.136 40.909 0.00 0.00 43.23 5.36
3663 4419 8.636213 CCCTATAAAATGCTCATTTCTGATTGT 58.364 33.333 8.14 0.00 39.88 2.71
3664 4420 7.597743 GCCCTATAAAATGCTCATTTCTGATTG 59.402 37.037 8.14 4.66 39.88 2.67
3665 4421 7.256083 GGCCCTATAAAATGCTCATTTCTGATT 60.256 37.037 8.14 0.00 39.88 2.57
3666 4422 6.210185 GGCCCTATAAAATGCTCATTTCTGAT 59.790 38.462 8.14 5.75 39.88 2.90
3667 4423 5.536161 GGCCCTATAAAATGCTCATTTCTGA 59.464 40.000 8.14 0.00 39.88 3.27
3668 4424 5.537674 AGGCCCTATAAAATGCTCATTTCTG 59.462 40.000 0.00 0.96 39.88 3.02
3669 4425 5.537674 CAGGCCCTATAAAATGCTCATTTCT 59.462 40.000 0.00 2.95 39.88 2.52
3670 4426 5.302823 ACAGGCCCTATAAAATGCTCATTTC 59.697 40.000 0.00 0.00 39.88 2.17
3671 4427 5.211201 ACAGGCCCTATAAAATGCTCATTT 58.789 37.500 0.00 2.24 42.35 2.32
3672 4428 4.808042 ACAGGCCCTATAAAATGCTCATT 58.192 39.130 0.00 0.00 0.00 2.57
3673 4429 4.459852 ACAGGCCCTATAAAATGCTCAT 57.540 40.909 0.00 0.00 0.00 2.90
3674 4430 3.951563 ACAGGCCCTATAAAATGCTCA 57.048 42.857 0.00 0.00 0.00 4.26
3675 4431 3.251004 CGAACAGGCCCTATAAAATGCTC 59.749 47.826 0.00 0.00 0.00 4.26
3676 4432 3.214328 CGAACAGGCCCTATAAAATGCT 58.786 45.455 0.00 0.00 0.00 3.79
3677 4433 2.293399 CCGAACAGGCCCTATAAAATGC 59.707 50.000 0.00 0.00 0.00 3.56
3678 4434 3.815809 TCCGAACAGGCCCTATAAAATG 58.184 45.455 0.00 0.00 40.77 2.32
3679 4435 4.461198 CTTCCGAACAGGCCCTATAAAAT 58.539 43.478 0.00 0.00 40.77 1.82
3680 4436 3.881220 CTTCCGAACAGGCCCTATAAAA 58.119 45.455 0.00 0.00 40.77 1.52
3681 4437 2.420967 GCTTCCGAACAGGCCCTATAAA 60.421 50.000 0.00 0.00 40.77 1.40
3682 4438 1.140252 GCTTCCGAACAGGCCCTATAA 59.860 52.381 0.00 0.00 40.77 0.98
3683 4439 0.756903 GCTTCCGAACAGGCCCTATA 59.243 55.000 0.00 0.00 40.77 1.31
3684 4440 0.983378 AGCTTCCGAACAGGCCCTAT 60.983 55.000 0.00 0.00 40.77 2.57
3685 4441 1.612442 AGCTTCCGAACAGGCCCTA 60.612 57.895 0.00 0.00 40.77 3.53
3686 4442 2.930562 AGCTTCCGAACAGGCCCT 60.931 61.111 0.00 0.00 40.77 5.19
3687 4443 2.436824 GAGCTTCCGAACAGGCCC 60.437 66.667 0.00 0.00 40.77 5.80
3688 4444 2.815647 CGAGCTTCCGAACAGGCC 60.816 66.667 0.00 0.00 40.77 5.19
3689 4445 3.491652 GCGAGCTTCCGAACAGGC 61.492 66.667 0.00 0.00 40.77 4.85
3690 4446 2.815647 GGCGAGCTTCCGAACAGG 60.816 66.667 0.00 0.00 42.97 4.00
3691 4447 2.048222 TGGCGAGCTTCCGAACAG 60.048 61.111 0.00 0.00 0.00 3.16
3692 4448 2.048222 CTGGCGAGCTTCCGAACA 60.048 61.111 0.00 0.00 0.00 3.18
3693 4449 3.491652 GCTGGCGAGCTTCCGAAC 61.492 66.667 14.13 0.00 42.52 3.95
3723 4479 2.956964 GCTCCACTCGCGGATTCG 60.957 66.667 6.13 0.00 33.56 3.34
3724 4480 1.880340 CAGCTCCACTCGCGGATTC 60.880 63.158 6.13 0.00 33.56 2.52
3725 4481 2.185350 CAGCTCCACTCGCGGATT 59.815 61.111 6.13 0.00 33.56 3.01
3726 4482 3.842923 CCAGCTCCACTCGCGGAT 61.843 66.667 6.13 0.00 33.56 4.18
3731 4487 2.947532 TTCAGGCCAGCTCCACTCG 61.948 63.158 5.01 0.00 0.00 4.18
3732 4488 1.376553 GTTCAGGCCAGCTCCACTC 60.377 63.158 5.01 0.00 0.00 3.51
3733 4489 2.753029 GTTCAGGCCAGCTCCACT 59.247 61.111 5.01 0.00 0.00 4.00
3734 4490 2.743928 CGTTCAGGCCAGCTCCAC 60.744 66.667 5.01 0.00 0.00 4.02
3735 4491 4.020617 CCGTTCAGGCCAGCTCCA 62.021 66.667 5.01 0.00 0.00 3.86
3744 4500 2.747855 GAAGCCAGGCCGTTCAGG 60.748 66.667 8.22 0.00 44.97 3.86
3745 4501 2.032528 TGAAGCCAGGCCGTTCAG 59.967 61.111 8.22 0.00 0.00 3.02
3746 4502 2.032528 CTGAAGCCAGGCCGTTCA 59.967 61.111 8.22 11.84 36.77 3.18
3765 4521 1.142748 CGATCTCGGAAGCCAGCTT 59.857 57.895 4.17 4.17 39.23 3.74
3766 4522 1.323271 TTCGATCTCGGAAGCCAGCT 61.323 55.000 0.00 0.00 40.29 4.24
3767 4523 1.141881 TTCGATCTCGGAAGCCAGC 59.858 57.895 0.00 0.00 40.29 4.85
3768 4524 0.528684 GGTTCGATCTCGGAAGCCAG 60.529 60.000 0.00 0.00 40.29 4.85
3769 4525 1.254975 TGGTTCGATCTCGGAAGCCA 61.255 55.000 8.07 0.00 40.29 4.75
3770 4526 0.108329 TTGGTTCGATCTCGGAAGCC 60.108 55.000 8.07 0.00 40.29 4.35
3771 4527 1.722011 TTTGGTTCGATCTCGGAAGC 58.278 50.000 0.00 4.62 40.29 3.86
3772 4528 3.120304 GGTTTTTGGTTCGATCTCGGAAG 60.120 47.826 0.00 0.00 40.29 3.46
3773 4529 2.809696 GGTTTTTGGTTCGATCTCGGAA 59.190 45.455 0.00 0.00 40.29 4.30
3774 4530 2.224329 TGGTTTTTGGTTCGATCTCGGA 60.224 45.455 0.00 0.00 40.29 4.55
3775 4531 2.095919 GTGGTTTTTGGTTCGATCTCGG 60.096 50.000 0.00 0.00 40.29 4.63
3776 4532 2.411031 CGTGGTTTTTGGTTCGATCTCG 60.411 50.000 0.00 0.00 41.45 4.04
3777 4533 2.546789 ACGTGGTTTTTGGTTCGATCTC 59.453 45.455 0.00 0.00 0.00 2.75
3778 4534 2.567985 ACGTGGTTTTTGGTTCGATCT 58.432 42.857 0.00 0.00 0.00 2.75
3779 4535 3.248125 TGTACGTGGTTTTTGGTTCGATC 59.752 43.478 0.00 0.00 0.00 3.69
3780 4536 3.204526 TGTACGTGGTTTTTGGTTCGAT 58.795 40.909 0.00 0.00 0.00 3.59
3781 4537 2.625737 TGTACGTGGTTTTTGGTTCGA 58.374 42.857 0.00 0.00 0.00 3.71
3782 4538 3.356145 CTTGTACGTGGTTTTTGGTTCG 58.644 45.455 0.00 0.00 0.00 3.95
3783 4539 3.129113 ACCTTGTACGTGGTTTTTGGTTC 59.871 43.478 0.00 0.00 31.62 3.62
3784 4540 3.090790 ACCTTGTACGTGGTTTTTGGTT 58.909 40.909 0.00 0.00 31.62 3.67
3785 4541 2.684374 GACCTTGTACGTGGTTTTTGGT 59.316 45.455 10.36 0.00 36.59 3.67
3786 4542 2.286536 CGACCTTGTACGTGGTTTTTGG 60.287 50.000 10.36 0.00 36.59 3.28
3787 4543 2.851764 GCGACCTTGTACGTGGTTTTTG 60.852 50.000 10.36 4.09 36.59 2.44
3788 4544 1.331447 GCGACCTTGTACGTGGTTTTT 59.669 47.619 10.36 0.00 36.59 1.94
3789 4545 0.939419 GCGACCTTGTACGTGGTTTT 59.061 50.000 10.36 0.00 36.59 2.43
3790 4546 1.216941 CGCGACCTTGTACGTGGTTT 61.217 55.000 0.00 0.00 36.59 3.27
3791 4547 1.662446 CGCGACCTTGTACGTGGTT 60.662 57.895 0.00 0.00 36.59 3.67
3792 4548 2.049802 CGCGACCTTGTACGTGGT 60.050 61.111 0.00 9.03 39.60 4.16
3793 4549 3.475774 GCGCGACCTTGTACGTGG 61.476 66.667 12.10 0.00 39.80 4.94
3794 4550 3.475774 GGCGCGACCTTGTACGTG 61.476 66.667 12.10 0.00 41.84 4.49
3803 4559 3.423154 CAAGGACAAGGCGCGACC 61.423 66.667 9.25 10.36 39.61 4.79
3804 4560 1.298859 ATTCAAGGACAAGGCGCGAC 61.299 55.000 12.10 7.34 0.00 5.19
3805 4561 0.605319 AATTCAAGGACAAGGCGCGA 60.605 50.000 12.10 0.00 0.00 5.87
3806 4562 0.240945 AAATTCAAGGACAAGGCGCG 59.759 50.000 0.00 0.00 0.00 6.86
3807 4563 1.000274 ACAAATTCAAGGACAAGGCGC 60.000 47.619 0.00 0.00 0.00 6.53
3808 4564 3.052036 CAACAAATTCAAGGACAAGGCG 58.948 45.455 0.00 0.00 0.00 5.52
3809 4565 3.069443 TCCAACAAATTCAAGGACAAGGC 59.931 43.478 0.00 0.00 0.00 4.35
3810 4566 4.935352 TCCAACAAATTCAAGGACAAGG 57.065 40.909 0.00 0.00 0.00 3.61
3811 4567 6.514947 TGAATCCAACAAATTCAAGGACAAG 58.485 36.000 0.00 0.00 39.52 3.16
3812 4568 6.323482 TCTGAATCCAACAAATTCAAGGACAA 59.677 34.615 0.80 0.00 41.31 3.18
3813 4569 5.832595 TCTGAATCCAACAAATTCAAGGACA 59.167 36.000 0.80 0.00 41.31 4.02
3814 4570 6.331369 TCTGAATCCAACAAATTCAAGGAC 57.669 37.500 0.80 0.00 41.31 3.85
3815 4571 6.777091 TCTTCTGAATCCAACAAATTCAAGGA 59.223 34.615 0.00 0.00 41.31 3.36
3816 4572 6.985117 TCTTCTGAATCCAACAAATTCAAGG 58.015 36.000 0.00 0.00 41.31 3.61
3817 4573 7.088905 CCTCTTCTGAATCCAACAAATTCAAG 58.911 38.462 0.00 0.00 41.31 3.02
3818 4574 6.015180 CCCTCTTCTGAATCCAACAAATTCAA 60.015 38.462 0.00 0.00 41.31 2.69
3819 4575 5.477984 CCCTCTTCTGAATCCAACAAATTCA 59.522 40.000 0.00 0.00 40.03 2.57
3820 4576 5.623141 GCCCTCTTCTGAATCCAACAAATTC 60.623 44.000 0.00 0.00 34.40 2.17
3821 4577 4.221482 GCCCTCTTCTGAATCCAACAAATT 59.779 41.667 0.00 0.00 0.00 1.82
3822 4578 3.766051 GCCCTCTTCTGAATCCAACAAAT 59.234 43.478 0.00 0.00 0.00 2.32
3823 4579 3.157087 GCCCTCTTCTGAATCCAACAAA 58.843 45.455 0.00 0.00 0.00 2.83
3824 4580 2.795329 GCCCTCTTCTGAATCCAACAA 58.205 47.619 0.00 0.00 0.00 2.83
3825 4581 1.339055 CGCCCTCTTCTGAATCCAACA 60.339 52.381 0.00 0.00 0.00 3.33
3826 4582 1.066143 TCGCCCTCTTCTGAATCCAAC 60.066 52.381 0.00 0.00 0.00 3.77
3827 4583 1.275666 TCGCCCTCTTCTGAATCCAA 58.724 50.000 0.00 0.00 0.00 3.53
3828 4584 1.208052 CTTCGCCCTCTTCTGAATCCA 59.792 52.381 0.00 0.00 0.00 3.41
3829 4585 1.946745 CTTCGCCCTCTTCTGAATCC 58.053 55.000 0.00 0.00 0.00 3.01
3830 4586 1.294857 GCTTCGCCCTCTTCTGAATC 58.705 55.000 0.00 0.00 0.00 2.52
3831 4587 0.615331 TGCTTCGCCCTCTTCTGAAT 59.385 50.000 0.00 0.00 0.00 2.57
3832 4588 0.396435 TTGCTTCGCCCTCTTCTGAA 59.604 50.000 0.00 0.00 0.00 3.02
3833 4589 0.615331 ATTGCTTCGCCCTCTTCTGA 59.385 50.000 0.00 0.00 0.00 3.27
3834 4590 1.457346 AATTGCTTCGCCCTCTTCTG 58.543 50.000 0.00 0.00 0.00 3.02
3835 4591 2.206576 AAATTGCTTCGCCCTCTTCT 57.793 45.000 0.00 0.00 0.00 2.85
3836 4592 3.303881 AAAAATTGCTTCGCCCTCTTC 57.696 42.857 0.00 0.00 0.00 2.87
3867 4623 9.620259 GTCCTAGATTCCAGTCTAAATTTTCAT 57.380 33.333 0.00 0.00 30.74 2.57
3868 4624 8.047310 GGTCCTAGATTCCAGTCTAAATTTTCA 58.953 37.037 0.00 0.00 30.74 2.69
3869 4625 7.499563 GGGTCCTAGATTCCAGTCTAAATTTTC 59.500 40.741 0.00 0.00 30.74 2.29
3870 4626 7.036863 TGGGTCCTAGATTCCAGTCTAAATTTT 60.037 37.037 0.00 0.00 30.74 1.82
3871 4627 6.447084 TGGGTCCTAGATTCCAGTCTAAATTT 59.553 38.462 0.00 0.00 30.74 1.82
3872 4628 5.970640 TGGGTCCTAGATTCCAGTCTAAATT 59.029 40.000 0.00 0.00 30.74 1.82
3873 4629 5.538877 TGGGTCCTAGATTCCAGTCTAAAT 58.461 41.667 0.00 0.00 30.74 1.40
3874 4630 4.955335 TGGGTCCTAGATTCCAGTCTAAA 58.045 43.478 0.00 0.00 30.74 1.85
3875 4631 4.620086 TGGGTCCTAGATTCCAGTCTAA 57.380 45.455 0.00 0.00 30.74 2.10
3876 4632 4.834406 ATGGGTCCTAGATTCCAGTCTA 57.166 45.455 0.00 0.00 32.30 2.59
3877 4633 3.713764 CAATGGGTCCTAGATTCCAGTCT 59.286 47.826 0.00 0.00 32.30 3.24
3878 4634 3.181450 CCAATGGGTCCTAGATTCCAGTC 60.181 52.174 0.00 0.00 32.30 3.51
3879 4635 2.780010 CCAATGGGTCCTAGATTCCAGT 59.220 50.000 0.00 0.00 32.30 4.00
3880 4636 2.487986 GCCAATGGGTCCTAGATTCCAG 60.488 54.545 0.00 0.00 36.17 3.86
3881 4637 1.494721 GCCAATGGGTCCTAGATTCCA 59.505 52.381 0.00 0.00 36.17 3.53
3882 4638 1.777272 AGCCAATGGGTCCTAGATTCC 59.223 52.381 0.00 0.00 36.17 3.01
3883 4639 3.584733 AAGCCAATGGGTCCTAGATTC 57.415 47.619 3.76 0.00 36.17 2.52
3884 4640 3.785887 TGTAAGCCAATGGGTCCTAGATT 59.214 43.478 3.76 0.00 36.17 2.40
3885 4641 3.393687 TGTAAGCCAATGGGTCCTAGAT 58.606 45.455 3.76 0.00 36.17 1.98
3886 4642 2.840511 TGTAAGCCAATGGGTCCTAGA 58.159 47.619 3.76 0.00 36.17 2.43
3887 4643 3.864789 ATGTAAGCCAATGGGTCCTAG 57.135 47.619 3.76 0.00 36.17 3.02
3888 4644 4.601406 AAATGTAAGCCAATGGGTCCTA 57.399 40.909 3.76 0.00 36.17 2.94
3889 4645 3.473113 AAATGTAAGCCAATGGGTCCT 57.527 42.857 3.76 0.00 36.17 3.85
3890 4646 4.551702 AAAAATGTAAGCCAATGGGTCC 57.448 40.909 3.76 0.00 36.17 4.46
3930 4686 5.220835 CCTTCTTTAATGCATGATACGCACA 60.221 40.000 0.00 0.00 43.35 4.57
3996 4757 1.339631 TGAGGGCTCAATTGTAACCGG 60.340 52.381 0.00 0.00 36.53 5.28
4012 4773 3.737355 GCTAGGTAGCGTTAAGGTTGAGG 60.737 52.174 0.00 0.00 39.82 3.86
4031 4793 3.161450 GCTGATCGGGTGGGGCTA 61.161 66.667 3.14 0.00 0.00 3.93
4050 4812 1.205179 TGGCGCGAGTAATTAGACCAA 59.795 47.619 12.10 0.00 0.00 3.67
4059 4821 2.185867 GTGGGATGGCGCGAGTAA 59.814 61.111 12.10 0.00 0.00 2.24
4087 4849 1.425066 ACATGGCCTTCTTCCTGTTGA 59.575 47.619 3.32 0.00 0.00 3.18
4089 4851 1.611673 CGACATGGCCTTCTTCCTGTT 60.612 52.381 3.32 0.00 0.00 3.16
4098 4860 0.537143 TTCAAGCACGACATGGCCTT 60.537 50.000 3.32 0.00 0.00 4.35
4125 4887 4.749310 CAGAGCTTGGGCGCGAGT 62.749 66.667 12.10 6.38 42.97 4.18
4148 4910 0.389687 TGATCGCGTGCATTGAGACA 60.390 50.000 5.77 0.00 0.00 3.41
4199 4961 3.804873 GGAAGCATAGGAACAAGATCGTC 59.195 47.826 0.00 0.00 0.00 4.20
4258 5020 1.133761 CGAGGACTCACCAGAGGGATA 60.134 57.143 0.00 0.00 46.44 2.59
4289 5051 2.028484 GTCGACTGGTTCACGGCA 59.972 61.111 8.70 0.00 0.00 5.69
4330 5092 1.299648 CTCAACAGGCCGGATTGGA 59.700 57.895 10.86 0.22 42.00 3.53
4390 5152 5.068198 ACAATCAATCACATCATGCTAACCC 59.932 40.000 0.00 0.00 0.00 4.11
4442 5204 2.112815 GTTACCACATCAGGCGGCC 61.113 63.158 12.11 12.11 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.