Multiple sequence alignment - TraesCS1B01G207200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G207200 chr1B 100.000 4577 0 0 1 4577 374330886 374335462 0.000000e+00 8453.0
1 TraesCS1B01G207200 chr1B 95.853 2508 98 5 1257 3762 53735521 53738024 0.000000e+00 4050.0
2 TraesCS1B01G207200 chr6A 97.195 3494 90 7 273 3761 457607607 457604117 0.000000e+00 5903.0
3 TraesCS1B01G207200 chr6A 96.855 3498 100 9 272 3763 457590204 457586711 0.000000e+00 5842.0
4 TraesCS1B01G207200 chr5A 96.955 3514 81 9 268 3760 704588939 704585431 0.000000e+00 5873.0
5 TraesCS1B01G207200 chr5A 97.297 37 0 1 3975 4010 663788577 663788541 1.370000e-05 62.1
6 TraesCS1B01G207200 chr3B 97.477 3448 71 5 329 3760 725369179 725372626 0.000000e+00 5871.0
7 TraesCS1B01G207200 chr2D 95.745 3337 127 5 439 3761 532131023 532134358 0.000000e+00 5361.0
8 TraesCS1B01G207200 chr2D 90.388 2476 211 12 1290 3761 203441432 203443884 0.000000e+00 3229.0
9 TraesCS1B01G207200 chr2D 84.468 2292 339 13 1309 3588 628168801 628171087 0.000000e+00 2244.0
10 TraesCS1B01G207200 chr3D 95.354 2841 101 7 921 3760 194684650 194687460 0.000000e+00 4486.0
11 TraesCS1B01G207200 chr3D 94.128 562 30 2 271 829 194684094 194684655 0.000000e+00 852.0
12 TraesCS1B01G207200 chrUn 96.925 1951 55 4 319 2266 62697818 62695870 0.000000e+00 3265.0
13 TraesCS1B01G207200 chrUn 94.114 1665 74 13 346 1993 235724950 235726607 0.000000e+00 2510.0
14 TraesCS1B01G207200 chrUn 94.114 1665 74 13 346 1993 289922402 289924059 0.000000e+00 2510.0
15 TraesCS1B01G207200 chrUn 94.114 1665 74 13 346 1993 322256154 322257811 0.000000e+00 2510.0
16 TraesCS1B01G207200 chr5D 93.697 1666 71 11 271 1910 520750866 520752523 0.000000e+00 2464.0
17 TraesCS1B01G207200 chr7A 91.850 454 21 11 270 710 40879654 40879204 1.810000e-173 619.0
18 TraesCS1B01G207200 chr7A 94.576 295 14 2 3468 3762 40877625 40877333 5.400000e-124 455.0
19 TraesCS1B01G207200 chr1D 84.351 524 53 10 3925 4444 275140549 275141047 1.910000e-133 486.0
20 TraesCS1B01G207200 chr1D 80.505 277 21 19 1 271 275140187 275140436 1.010000e-41 182.0
21 TraesCS1B01G207200 chr1A 91.765 85 6 1 3 86 347637498 347637582 2.890000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G207200 chr1B 374330886 374335462 4576 False 8453 8453 100.000 1 4577 1 chr1B.!!$F2 4576
1 TraesCS1B01G207200 chr1B 53735521 53738024 2503 False 4050 4050 95.853 1257 3762 1 chr1B.!!$F1 2505
2 TraesCS1B01G207200 chr6A 457604117 457607607 3490 True 5903 5903 97.195 273 3761 1 chr6A.!!$R2 3488
3 TraesCS1B01G207200 chr6A 457586711 457590204 3493 True 5842 5842 96.855 272 3763 1 chr6A.!!$R1 3491
4 TraesCS1B01G207200 chr5A 704585431 704588939 3508 True 5873 5873 96.955 268 3760 1 chr5A.!!$R2 3492
5 TraesCS1B01G207200 chr3B 725369179 725372626 3447 False 5871 5871 97.477 329 3760 1 chr3B.!!$F1 3431
6 TraesCS1B01G207200 chr2D 532131023 532134358 3335 False 5361 5361 95.745 439 3761 1 chr2D.!!$F2 3322
7 TraesCS1B01G207200 chr2D 203441432 203443884 2452 False 3229 3229 90.388 1290 3761 1 chr2D.!!$F1 2471
8 TraesCS1B01G207200 chr2D 628168801 628171087 2286 False 2244 2244 84.468 1309 3588 1 chr2D.!!$F3 2279
9 TraesCS1B01G207200 chr3D 194684094 194687460 3366 False 2669 4486 94.741 271 3760 2 chr3D.!!$F1 3489
10 TraesCS1B01G207200 chrUn 62695870 62697818 1948 True 3265 3265 96.925 319 2266 1 chrUn.!!$R1 1947
11 TraesCS1B01G207200 chrUn 235724950 235726607 1657 False 2510 2510 94.114 346 1993 1 chrUn.!!$F1 1647
12 TraesCS1B01G207200 chrUn 289922402 289924059 1657 False 2510 2510 94.114 346 1993 1 chrUn.!!$F2 1647
13 TraesCS1B01G207200 chrUn 322256154 322257811 1657 False 2510 2510 94.114 346 1993 1 chrUn.!!$F3 1647
14 TraesCS1B01G207200 chr5D 520750866 520752523 1657 False 2464 2464 93.697 271 1910 1 chr5D.!!$F1 1639
15 TraesCS1B01G207200 chr7A 40877333 40879654 2321 True 537 619 93.213 270 3762 2 chr7A.!!$R1 3492
16 TraesCS1B01G207200 chr1D 275140187 275141047 860 False 334 486 82.428 1 4444 2 chr1D.!!$F1 4443

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
265 266 0.036765 TGGAAGCAATTCCTACGCGT 60.037 50.000 19.17 19.17 41.65 6.01 F
473 493 0.400213 AGATGAAACGACAGCCCCAA 59.600 50.000 0.00 0.00 0.00 4.12 F
494 514 2.053627 CGCAGTACGTTCCGTAACTTT 58.946 47.619 0.00 0.00 43.95 2.66 F
818 1780 2.170397 TGTGCAGTCCTTCAAGTTCAGA 59.830 45.455 0.00 0.00 0.00 3.27 F
1128 2286 2.568062 TGCTGTGATAGTACCCCGAAAA 59.432 45.455 0.00 0.00 0.00 2.29 F
1896 3060 3.304057 GCAAGTTGTACCAAGAGAGCAAC 60.304 47.826 4.48 0.00 39.52 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2021 3186 3.546815 GGCAGTAGCGAGCATGTTTATTG 60.547 47.826 0.00 0.00 43.41 1.90 R
2170 3335 4.999950 AGATTCTTCGATGCAAACAGAAGT 59.000 37.500 17.33 5.65 40.49 3.01 R
2361 3527 5.760484 AAAATGCCCTTGGATATTTGTGT 57.240 34.783 0.00 0.00 0.00 3.72 R
2642 3809 3.942829 TCCTTATCAGTTTCAGCCACTG 58.057 45.455 0.00 0.00 42.74 3.66 R
2867 4034 3.465871 TCCAATGCTTTTGAAAAGCCAC 58.534 40.909 32.31 12.29 42.36 5.01 R
3791 4967 1.327303 GGCAACACCCTGACAAATCA 58.673 50.000 0.00 0.00 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
148 149 8.859517 AAAATGCAAAATTGGAAAACATGAAG 57.140 26.923 0.00 0.00 30.51 3.02
149 150 7.804843 AATGCAAAATTGGAAAACATGAAGA 57.195 28.000 0.00 0.00 30.51 2.87
150 151 7.804843 ATGCAAAATTGGAAAACATGAAGAA 57.195 28.000 0.00 0.00 30.51 2.52
151 152 7.621428 TGCAAAATTGGAAAACATGAAGAAA 57.379 28.000 0.00 0.00 0.00 2.52
152 153 8.223177 TGCAAAATTGGAAAACATGAAGAAAT 57.777 26.923 0.00 0.00 0.00 2.17
153 154 8.129840 TGCAAAATTGGAAAACATGAAGAAATG 58.870 29.630 0.00 0.00 0.00 2.32
154 155 8.130469 GCAAAATTGGAAAACATGAAGAAATGT 58.870 29.630 0.00 0.00 42.62 2.71
167 168 9.796120 ACATGAAGAAATGTTAAAAGAAAACGA 57.204 25.926 0.00 0.00 37.50 3.85
178 179 9.228636 TGTTAAAAGAAAACGAAAGAACATAGC 57.771 29.630 0.00 0.00 0.00 2.97
179 180 9.447040 GTTAAAAGAAAACGAAAGAACATAGCT 57.553 29.630 0.00 0.00 0.00 3.32
182 183 7.964604 AAGAAAACGAAAGAACATAGCTAGT 57.035 32.000 0.00 0.00 0.00 2.57
183 184 7.583860 AGAAAACGAAAGAACATAGCTAGTC 57.416 36.000 0.00 0.00 0.00 2.59
184 185 6.590677 AGAAAACGAAAGAACATAGCTAGTCC 59.409 38.462 0.00 0.00 0.00 3.85
185 186 5.401531 AACGAAAGAACATAGCTAGTCCA 57.598 39.130 0.00 0.00 0.00 4.02
186 187 5.401531 ACGAAAGAACATAGCTAGTCCAA 57.598 39.130 0.00 0.00 0.00 3.53
187 188 5.790593 ACGAAAGAACATAGCTAGTCCAAA 58.209 37.500 0.00 0.00 0.00 3.28
188 189 6.228258 ACGAAAGAACATAGCTAGTCCAAAA 58.772 36.000 0.00 0.00 0.00 2.44
189 190 6.147328 ACGAAAGAACATAGCTAGTCCAAAAC 59.853 38.462 0.00 0.00 0.00 2.43
190 191 6.402226 CGAAAGAACATAGCTAGTCCAAAACC 60.402 42.308 0.00 0.00 0.00 3.27
191 192 4.504858 AGAACATAGCTAGTCCAAAACCG 58.495 43.478 0.00 0.00 0.00 4.44
192 193 3.261981 ACATAGCTAGTCCAAAACCGG 57.738 47.619 0.00 0.00 0.00 5.28
193 194 2.835764 ACATAGCTAGTCCAAAACCGGA 59.164 45.455 9.46 0.00 0.00 5.14
194 195 3.262405 ACATAGCTAGTCCAAAACCGGAA 59.738 43.478 9.46 0.00 36.62 4.30
195 196 2.474410 AGCTAGTCCAAAACCGGAAG 57.526 50.000 9.46 0.00 36.62 3.46
196 197 1.975680 AGCTAGTCCAAAACCGGAAGA 59.024 47.619 9.46 0.00 36.62 2.87
197 198 2.370849 AGCTAGTCCAAAACCGGAAGAA 59.629 45.455 9.46 0.00 36.62 2.52
198 199 3.143728 GCTAGTCCAAAACCGGAAGAAA 58.856 45.455 9.46 0.00 36.62 2.52
199 200 3.058432 GCTAGTCCAAAACCGGAAGAAAC 60.058 47.826 9.46 0.00 36.62 2.78
200 201 2.304092 AGTCCAAAACCGGAAGAAACC 58.696 47.619 9.46 0.00 36.62 3.27
201 202 2.025898 GTCCAAAACCGGAAGAAACCA 58.974 47.619 9.46 0.00 36.62 3.67
202 203 2.427812 GTCCAAAACCGGAAGAAACCAA 59.572 45.455 9.46 0.00 36.62 3.67
203 204 3.069016 GTCCAAAACCGGAAGAAACCAAT 59.931 43.478 9.46 0.00 36.62 3.16
204 205 4.278919 GTCCAAAACCGGAAGAAACCAATA 59.721 41.667 9.46 0.00 36.62 1.90
205 206 4.894114 TCCAAAACCGGAAGAAACCAATAA 59.106 37.500 9.46 0.00 29.93 1.40
206 207 5.540719 TCCAAAACCGGAAGAAACCAATAAT 59.459 36.000 9.46 0.00 29.93 1.28
207 208 6.720288 TCCAAAACCGGAAGAAACCAATAATA 59.280 34.615 9.46 0.00 29.93 0.98
208 209 7.232941 TCCAAAACCGGAAGAAACCAATAATAA 59.767 33.333 9.46 0.00 29.93 1.40
209 210 7.873505 CCAAAACCGGAAGAAACCAATAATAAA 59.126 33.333 9.46 0.00 0.00 1.40
210 211 9.262358 CAAAACCGGAAGAAACCAATAATAAAA 57.738 29.630 9.46 0.00 0.00 1.52
211 212 9.833917 AAAACCGGAAGAAACCAATAATAAAAA 57.166 25.926 9.46 0.00 0.00 1.94
234 235 8.816640 AAAAATGGCAGTAAACTCAAGTAATG 57.183 30.769 0.00 0.00 0.00 1.90
235 236 6.515272 AATGGCAGTAAACTCAAGTAATGG 57.485 37.500 0.00 0.00 0.00 3.16
236 237 4.331968 TGGCAGTAAACTCAAGTAATGGG 58.668 43.478 0.00 0.00 34.78 4.00
237 238 3.128764 GGCAGTAAACTCAAGTAATGGGC 59.871 47.826 0.00 0.00 30.00 5.36
238 239 3.128764 GCAGTAAACTCAAGTAATGGGCC 59.871 47.826 0.00 0.00 30.00 5.80
239 240 3.694566 CAGTAAACTCAAGTAATGGGCCC 59.305 47.826 17.59 17.59 30.00 5.80
240 241 2.990740 AAACTCAAGTAATGGGCCCA 57.009 45.000 30.92 30.92 30.00 5.36
241 242 2.514458 AACTCAAGTAATGGGCCCAG 57.486 50.000 31.97 15.77 30.00 4.45
242 243 1.372501 ACTCAAGTAATGGGCCCAGT 58.627 50.000 31.97 31.12 30.00 4.00
243 244 1.282157 ACTCAAGTAATGGGCCCAGTC 59.718 52.381 31.50 20.86 30.00 3.51
244 245 0.623723 TCAAGTAATGGGCCCAGTCC 59.376 55.000 31.50 19.21 0.00 3.85
245 246 0.748005 CAAGTAATGGGCCCAGTCCG 60.748 60.000 31.50 11.91 0.00 4.79
246 247 1.205460 AAGTAATGGGCCCAGTCCGT 61.205 55.000 31.50 13.80 0.00 4.69
247 248 1.451387 GTAATGGGCCCAGTCCGTG 60.451 63.158 31.50 0.00 0.00 4.94
258 259 0.804989 CAGTCCGTGGAAGCAATTCC 59.195 55.000 0.00 0.00 41.48 3.01
259 260 0.693049 AGTCCGTGGAAGCAATTCCT 59.307 50.000 8.40 0.00 41.65 3.36
260 261 1.906574 AGTCCGTGGAAGCAATTCCTA 59.093 47.619 8.40 0.00 41.65 2.94
261 262 2.007608 GTCCGTGGAAGCAATTCCTAC 58.992 52.381 8.40 4.62 41.65 3.18
262 263 1.006832 CCGTGGAAGCAATTCCTACG 58.993 55.000 17.42 17.42 41.65 3.51
263 264 0.373716 CGTGGAAGCAATTCCTACGC 59.626 55.000 14.41 0.00 41.65 4.42
264 265 0.373716 GTGGAAGCAATTCCTACGCG 59.626 55.000 3.53 3.53 41.65 6.01
265 266 0.036765 TGGAAGCAATTCCTACGCGT 60.037 50.000 19.17 19.17 41.65 6.01
266 267 0.651031 GGAAGCAATTCCTACGCGTC 59.349 55.000 18.63 0.00 38.09 5.19
267 268 1.355971 GAAGCAATTCCTACGCGTCA 58.644 50.000 18.63 0.96 34.78 4.35
268 269 1.933853 GAAGCAATTCCTACGCGTCAT 59.066 47.619 18.63 0.36 34.78 3.06
366 367 9.647918 AGGGTCCATATACATATATGTAGTCTG 57.352 37.037 25.52 20.83 45.46 3.51
473 493 0.400213 AGATGAAACGACAGCCCCAA 59.600 50.000 0.00 0.00 0.00 4.12
494 514 2.053627 CGCAGTACGTTCCGTAACTTT 58.946 47.619 0.00 0.00 43.95 2.66
818 1780 2.170397 TGTGCAGTCCTTCAAGTTCAGA 59.830 45.455 0.00 0.00 0.00 3.27
819 1781 3.206150 GTGCAGTCCTTCAAGTTCAGAA 58.794 45.455 0.00 0.00 0.00 3.02
820 1782 3.249559 GTGCAGTCCTTCAAGTTCAGAAG 59.750 47.826 0.00 0.00 41.61 2.85
1058 2214 3.664537 GCCTTCAAGCGTAAGAAGAAACG 60.665 47.826 12.37 0.00 42.95 3.60
1124 2282 4.537135 AATATGCTGTGATAGTACCCCG 57.463 45.455 0.00 0.00 0.00 5.73
1128 2286 2.568062 TGCTGTGATAGTACCCCGAAAA 59.432 45.455 0.00 0.00 0.00 2.29
1896 3060 3.304057 GCAAGTTGTACCAAGAGAGCAAC 60.304 47.826 4.48 0.00 39.52 4.17
2001 3166 4.819105 AATTCGTGATCACTACCTTGGA 57.181 40.909 22.95 8.59 0.00 3.53
2021 3186 6.716934 TGGACCTTCTATACAGAATGAGTC 57.283 41.667 0.00 0.00 40.03 3.36
2256 3422 9.665264 CAAGGTTTGTTTAATGTTCTAGAAGAC 57.335 33.333 5.12 0.00 0.00 3.01
2642 3809 6.056236 CAGAAATAAGGGAGGCTTTACTACC 58.944 44.000 0.00 0.00 42.18 3.18
2702 3869 3.587797 AGCACAATCATTGGCAGAAAG 57.412 42.857 11.87 0.00 34.12 2.62
2717 3884 3.489229 GCAGAAAGTGAACTTGGTGGTTC 60.489 47.826 0.00 0.00 43.97 3.62
2954 4123 3.406682 GCACCAAGCGGAAAATCAG 57.593 52.632 0.00 0.00 35.59 2.90
3501 4674 7.428020 CACTTGAAAATGATGTCTTGGAGAAA 58.572 34.615 0.00 0.00 0.00 2.52
3693 4866 7.744715 GGTGATTATGCTTGCGTAATTGTATAC 59.255 37.037 17.72 12.59 0.00 1.47
3791 4967 1.837538 CGCAACGGACGTCCAAACAT 61.838 55.000 32.80 11.65 35.14 2.71
3801 4977 4.466828 GACGTCCAAACATGATTTGTCAG 58.533 43.478 3.51 3.18 37.68 3.51
3804 4980 3.573967 GTCCAAACATGATTTGTCAGGGT 59.426 43.478 0.00 0.00 37.68 4.34
3805 4981 3.573538 TCCAAACATGATTTGTCAGGGTG 59.426 43.478 0.00 0.00 37.68 4.61
3828 5004 0.104855 CCATGTCGCCTAGCAGCTAA 59.895 55.000 3.09 0.00 0.00 3.09
3851 5027 2.097202 GCTCGACACATGACATATTCGC 60.097 50.000 0.00 0.00 0.00 4.70
3853 5029 1.852280 CGACACATGACATATTCGCGT 59.148 47.619 5.77 0.00 0.00 6.01
3859 5035 3.242413 ACATGACATATTCGCGTTCTTGC 60.242 43.478 5.77 0.00 0.00 4.01
3860 5036 2.342179 TGACATATTCGCGTTCTTGCA 58.658 42.857 5.77 0.00 34.15 4.08
3876 5052 3.615536 GCAGCATGTGCGGTTCACC 62.616 63.158 6.97 0.00 43.99 4.02
3889 5065 2.017049 GGTTCACCGAATTCATGGAGG 58.983 52.381 6.22 0.41 0.00 4.30
3890 5066 1.401905 GTTCACCGAATTCATGGAGGC 59.598 52.381 6.22 0.00 0.00 4.70
3891 5067 0.617935 TCACCGAATTCATGGAGGCA 59.382 50.000 6.22 0.00 0.00 4.75
3892 5068 0.734889 CACCGAATTCATGGAGGCAC 59.265 55.000 6.22 0.00 0.00 5.01
3913 5089 5.571784 ACTCATTAGTGGAATGCACAATG 57.428 39.130 17.05 17.05 44.11 2.82
3914 5090 5.012239 ACTCATTAGTGGAATGCACAATGT 58.988 37.500 19.95 7.86 44.11 2.71
3915 5091 5.124457 ACTCATTAGTGGAATGCACAATGTC 59.876 40.000 19.95 0.00 44.11 3.06
3916 5092 5.008980 TCATTAGTGGAATGCACAATGTCA 58.991 37.500 19.95 7.86 44.11 3.58
3917 5093 5.476254 TCATTAGTGGAATGCACAATGTCAA 59.524 36.000 19.95 7.39 44.11 3.18
3918 5094 3.928727 AGTGGAATGCACAATGTCAAG 57.071 42.857 7.79 0.00 0.00 3.02
3919 5095 3.489355 AGTGGAATGCACAATGTCAAGA 58.511 40.909 7.79 0.00 0.00 3.02
3920 5096 4.084287 AGTGGAATGCACAATGTCAAGAT 58.916 39.130 7.79 0.00 0.00 2.40
3921 5097 4.082408 AGTGGAATGCACAATGTCAAGATG 60.082 41.667 7.79 0.00 0.00 2.90
3922 5098 3.827876 TGGAATGCACAATGTCAAGATGT 59.172 39.130 0.00 0.00 0.00 3.06
3923 5099 5.008980 TGGAATGCACAATGTCAAGATGTA 58.991 37.500 0.00 0.00 0.00 2.29
3931 5107 2.022764 TGTCAAGATGTACATGGGCG 57.977 50.000 14.43 0.00 0.00 6.13
3943 5119 0.964860 CATGGGCGTTGGTGGATGAA 60.965 55.000 0.00 0.00 0.00 2.57
3957 5133 4.488879 GTGGATGAAGAATTGGCTCAAAC 58.511 43.478 0.00 0.00 0.00 2.93
3974 5151 5.277828 GCTCAAACCCTAGTAACAACAACTG 60.278 44.000 0.00 0.00 0.00 3.16
3975 5152 5.991861 TCAAACCCTAGTAACAACAACTGA 58.008 37.500 0.00 0.00 0.00 3.41
3976 5153 6.416415 TCAAACCCTAGTAACAACAACTGAA 58.584 36.000 0.00 0.00 0.00 3.02
3978 5155 4.711399 ACCCTAGTAACAACAACTGAACC 58.289 43.478 0.00 0.00 0.00 3.62
3981 5158 5.768164 CCCTAGTAACAACAACTGAACCAAT 59.232 40.000 0.00 0.00 0.00 3.16
3982 5159 6.293955 CCCTAGTAACAACAACTGAACCAATG 60.294 42.308 0.00 0.00 0.00 2.82
3983 5160 4.932146 AGTAACAACAACTGAACCAATGC 58.068 39.130 0.00 0.00 0.00 3.56
3984 5161 3.883830 AACAACAACTGAACCAATGCA 57.116 38.095 0.00 0.00 0.00 3.96
3985 5162 3.883830 ACAACAACTGAACCAATGCAA 57.116 38.095 0.00 0.00 0.00 4.08
3986 5163 4.199432 ACAACAACTGAACCAATGCAAA 57.801 36.364 0.00 0.00 0.00 3.68
4032 5209 4.677584 ACTCGTTATCACATGCTCTCTTC 58.322 43.478 0.00 0.00 0.00 2.87
4040 5217 1.001293 ACATGCTCTCTTCGTGAAGCA 59.999 47.619 4.72 0.77 38.28 3.91
4046 5223 3.506810 CTCTCTTCGTGAAGCACTTAGG 58.493 50.000 4.72 0.00 38.28 2.69
4051 5228 1.070134 TCGTGAAGCACTTAGGCACTT 59.930 47.619 0.00 0.00 33.75 3.16
4053 5230 2.096218 CGTGAAGCACTTAGGCACTTTC 60.096 50.000 0.00 0.00 33.75 2.62
4066 5243 1.410153 GCACTTTCTGGGCAATATGGG 59.590 52.381 0.00 0.00 46.29 4.00
4072 5249 1.741327 CTGGGCAATATGGGCAGCAC 61.741 60.000 5.93 0.00 34.52 4.40
4075 5252 2.328989 CAATATGGGCAGCACGCG 59.671 61.111 3.53 3.53 43.84 6.01
4076 5253 2.179547 CAATATGGGCAGCACGCGA 61.180 57.895 15.93 0.00 43.84 5.87
4094 5271 2.819115 CGACAAGGACATCCATGAGAG 58.181 52.381 10.04 0.00 38.06 3.20
4127 5304 5.373812 AGTCCCCAATCTATTCATCGTTT 57.626 39.130 0.00 0.00 0.00 3.60
4128 5305 5.368989 AGTCCCCAATCTATTCATCGTTTC 58.631 41.667 0.00 0.00 0.00 2.78
4129 5306 5.104527 AGTCCCCAATCTATTCATCGTTTCA 60.105 40.000 0.00 0.00 0.00 2.69
4130 5307 5.765182 GTCCCCAATCTATTCATCGTTTCAT 59.235 40.000 0.00 0.00 0.00 2.57
4147 5324 5.327091 GTTTCATCAACAGGTTCATCGATG 58.673 41.667 19.61 19.61 35.18 3.84
4148 5325 4.470334 TCATCAACAGGTTCATCGATGA 57.530 40.909 23.99 23.99 37.51 2.92
4154 5331 2.567169 ACAGGTTCATCGATGAGTTGGA 59.433 45.455 25.95 10.24 38.19 3.53
4161 5338 4.625028 TCATCGATGAGTTGGACATGATC 58.375 43.478 23.99 0.00 32.11 2.92
4172 5349 7.449395 TGAGTTGGACATGATCAAAGAAATTCT 59.551 33.333 0.00 0.00 0.00 2.40
4174 5351 8.302438 AGTTGGACATGATCAAAGAAATTCTTC 58.698 33.333 8.86 0.00 35.27 2.87
4176 5353 6.720748 TGGACATGATCAAAGAAATTCTTCCA 59.279 34.615 8.86 5.99 35.27 3.53
4206 5383 1.212688 CAAGGCCAGTCATCCATACCA 59.787 52.381 5.01 0.00 0.00 3.25
4231 5408 3.042887 GTCAACAACCAGCGCTAAAAAG 58.957 45.455 10.99 1.56 0.00 2.27
4232 5409 2.685897 TCAACAACCAGCGCTAAAAAGT 59.314 40.909 10.99 2.30 0.00 2.66
4234 5411 2.572290 ACAACCAGCGCTAAAAAGTCT 58.428 42.857 10.99 0.00 0.00 3.24
4243 5420 2.476185 CGCTAAAAAGTCTCGCCAATGG 60.476 50.000 0.00 0.00 0.00 3.16
4244 5421 2.747446 GCTAAAAAGTCTCGCCAATGGA 59.253 45.455 2.05 0.00 0.00 3.41
4262 5439 6.201425 CCAATGGACTATGCAAAAATACATGC 59.799 38.462 0.00 0.00 42.86 4.06
4267 5444 5.101628 ACTATGCAAAAATACATGCCAACG 58.898 37.500 0.00 0.00 41.87 4.10
4268 5445 2.681706 TGCAAAAATACATGCCAACGG 58.318 42.857 0.00 0.00 41.87 4.44
4283 5462 2.550606 CCAACGGAATGTCGAAAGGAAA 59.449 45.455 0.00 0.00 0.00 3.13
4310 5489 2.524611 GGGGGTCTACTATTGCGGT 58.475 57.895 0.00 0.00 0.00 5.68
4311 5490 0.835276 GGGGGTCTACTATTGCGGTT 59.165 55.000 0.00 0.00 0.00 4.44
4312 5491 1.211212 GGGGGTCTACTATTGCGGTTT 59.789 52.381 0.00 0.00 0.00 3.27
4313 5492 2.285977 GGGGTCTACTATTGCGGTTTG 58.714 52.381 0.00 0.00 0.00 2.93
4314 5493 1.669265 GGGTCTACTATTGCGGTTTGC 59.331 52.381 0.00 0.00 46.70 3.68
4328 5507 3.681897 GCGGTTTGCAGAGATATAGATGG 59.318 47.826 0.00 0.00 45.45 3.51
4349 5528 3.729966 GTACCTATTTGGGTAGCTCAGC 58.270 50.000 0.00 0.00 41.83 4.26
4364 5543 3.640967 AGCTCAGCTCTTGTTATAGGAGG 59.359 47.826 0.00 0.00 30.62 4.30
4373 5552 5.691896 TCTTGTTATAGGAGGAGTCGATGA 58.308 41.667 0.00 0.00 0.00 2.92
4379 5558 3.039252 AGGAGGAGTCGATGATCCTTT 57.961 47.619 15.46 7.13 46.12 3.11
4381 5560 2.224161 GGAGGAGTCGATGATCCTTTGG 60.224 54.545 15.46 0.00 46.12 3.28
4396 5575 4.424842 TCCTTTGGTTTTGGAGGCAATAT 58.575 39.130 0.00 0.00 0.00 1.28
4398 5577 4.222588 CCTTTGGTTTTGGAGGCAATATCA 59.777 41.667 0.00 0.00 0.00 2.15
4414 5593 1.350071 ATCATGCAGAGAGGCCCTAG 58.650 55.000 0.00 0.00 0.00 3.02
4426 5605 0.105778 GGCCCTAGCTCTAGCACAAG 59.894 60.000 4.54 0.00 45.16 3.16
4432 5611 3.058293 CCTAGCTCTAGCACAAGATCTCG 60.058 52.174 4.54 0.00 45.16 4.04
4440 5619 1.737363 GCACAAGATCTCGACCTCCAC 60.737 57.143 0.00 0.00 0.00 4.02
4444 5623 3.193263 CAAGATCTCGACCTCCACAATG 58.807 50.000 0.00 0.00 0.00 2.82
4445 5624 1.759445 AGATCTCGACCTCCACAATGG 59.241 52.381 0.00 0.00 39.43 3.16
4446 5625 1.482593 GATCTCGACCTCCACAATGGT 59.517 52.381 0.00 0.00 39.03 3.55
4447 5626 1.348064 TCTCGACCTCCACAATGGTT 58.652 50.000 0.00 0.00 39.03 3.67
4448 5627 2.531771 TCTCGACCTCCACAATGGTTA 58.468 47.619 0.00 0.00 39.03 2.85
4449 5628 2.232941 TCTCGACCTCCACAATGGTTAC 59.767 50.000 0.00 0.00 39.03 2.50
4450 5629 1.276989 TCGACCTCCACAATGGTTACC 59.723 52.381 0.00 0.00 39.03 2.85
4451 5630 1.734163 GACCTCCACAATGGTTACCG 58.266 55.000 0.00 0.00 39.03 4.02
4452 5631 1.276989 GACCTCCACAATGGTTACCGA 59.723 52.381 0.00 0.00 39.03 4.69
4453 5632 1.278127 ACCTCCACAATGGTTACCGAG 59.722 52.381 0.00 0.00 39.03 4.63
4454 5633 1.406887 CCTCCACAATGGTTACCGAGG 60.407 57.143 6.41 6.41 39.03 4.63
4455 5634 0.035820 TCCACAATGGTTACCGAGGC 60.036 55.000 0.00 0.00 39.03 4.70
4456 5635 0.322098 CCACAATGGTTACCGAGGCA 60.322 55.000 0.00 0.00 31.35 4.75
4457 5636 1.529226 CACAATGGTTACCGAGGCAA 58.471 50.000 0.00 0.00 0.00 4.52
4458 5637 1.468520 CACAATGGTTACCGAGGCAAG 59.531 52.381 0.00 0.00 0.00 4.01
4459 5638 1.349688 ACAATGGTTACCGAGGCAAGA 59.650 47.619 0.00 0.00 0.00 3.02
4460 5639 2.224670 ACAATGGTTACCGAGGCAAGAA 60.225 45.455 0.00 0.00 0.00 2.52
4461 5640 3.016736 CAATGGTTACCGAGGCAAGAAT 58.983 45.455 0.00 0.00 0.00 2.40
4462 5641 2.107950 TGGTTACCGAGGCAAGAATG 57.892 50.000 0.00 0.00 0.00 2.67
4463 5642 1.339631 TGGTTACCGAGGCAAGAATGG 60.340 52.381 0.00 0.00 0.00 3.16
4464 5643 1.065709 GGTTACCGAGGCAAGAATGGA 60.066 52.381 0.00 0.00 0.00 3.41
4465 5644 2.280628 GTTACCGAGGCAAGAATGGAG 58.719 52.381 0.00 0.00 0.00 3.86
4466 5645 0.178068 TACCGAGGCAAGAATGGAGC 59.822 55.000 0.00 0.00 0.00 4.70
4473 5652 3.930634 GGCAAGAATGGAGCCATTATC 57.069 47.619 14.35 4.12 45.50 1.75
4474 5653 3.225104 GGCAAGAATGGAGCCATTATCA 58.775 45.455 14.35 0.00 45.50 2.15
4475 5654 3.255149 GGCAAGAATGGAGCCATTATCAG 59.745 47.826 14.35 9.17 45.50 2.90
4476 5655 3.887716 GCAAGAATGGAGCCATTATCAGT 59.112 43.478 14.35 0.00 45.50 3.41
4477 5656 4.261489 GCAAGAATGGAGCCATTATCAGTG 60.261 45.833 14.35 8.33 45.50 3.66
4478 5657 5.128205 CAAGAATGGAGCCATTATCAGTGA 58.872 41.667 14.35 0.00 45.50 3.41
4479 5658 4.970711 AGAATGGAGCCATTATCAGTGAG 58.029 43.478 14.35 0.00 45.50 3.51
4480 5659 4.657504 AGAATGGAGCCATTATCAGTGAGA 59.342 41.667 14.35 0.00 45.50 3.27
4481 5660 5.310068 AGAATGGAGCCATTATCAGTGAGAT 59.690 40.000 14.35 0.00 45.50 2.75
4482 5661 6.499699 AGAATGGAGCCATTATCAGTGAGATA 59.500 38.462 14.35 0.00 45.50 1.98
4495 5674 9.842775 TTATCAGTGAGATAAATCTTCAAGCAT 57.157 29.630 0.00 0.00 44.20 3.79
4496 5675 7.783090 TCAGTGAGATAAATCTTCAAGCATC 57.217 36.000 0.00 0.00 37.25 3.91
4497 5676 7.563020 TCAGTGAGATAAATCTTCAAGCATCT 58.437 34.615 0.00 0.00 37.25 2.90
4498 5677 8.699130 TCAGTGAGATAAATCTTCAAGCATCTA 58.301 33.333 0.00 0.00 37.25 1.98
4499 5678 8.763356 CAGTGAGATAAATCTTCAAGCATCTAC 58.237 37.037 0.00 0.00 37.25 2.59
4500 5679 8.703743 AGTGAGATAAATCTTCAAGCATCTACT 58.296 33.333 0.00 0.00 37.25 2.57
4501 5680 9.323985 GTGAGATAAATCTTCAAGCATCTACTT 57.676 33.333 0.00 0.00 37.25 2.24
4502 5681 9.896645 TGAGATAAATCTTCAAGCATCTACTTT 57.103 29.630 0.00 0.00 37.25 2.66
4504 5683 9.039870 AGATAAATCTTCAAGCATCTACTTTCG 57.960 33.333 0.00 0.00 31.97 3.46
4505 5684 6.428385 AAATCTTCAAGCATCTACTTTCGG 57.572 37.500 0.00 0.00 0.00 4.30
4506 5685 4.801330 TCTTCAAGCATCTACTTTCGGA 57.199 40.909 0.00 0.00 0.00 4.55
4507 5686 4.748892 TCTTCAAGCATCTACTTTCGGAG 58.251 43.478 0.00 0.00 0.00 4.63
4508 5687 3.526931 TCAAGCATCTACTTTCGGAGG 57.473 47.619 0.00 0.00 0.00 4.30
4509 5688 1.936547 CAAGCATCTACTTTCGGAGGC 59.063 52.381 0.00 0.00 39.18 4.70
4510 5689 0.466124 AGCATCTACTTTCGGAGGCC 59.534 55.000 0.00 0.00 39.63 5.19
4520 5699 2.280524 CGGAGGCCGTGTTGTCAA 60.281 61.111 0.00 0.00 42.73 3.18
4521 5700 1.671054 CGGAGGCCGTGTTGTCAAT 60.671 57.895 0.00 0.00 42.73 2.57
4522 5701 1.875963 GGAGGCCGTGTTGTCAATG 59.124 57.895 0.00 0.00 0.00 2.82
4523 5702 0.889186 GGAGGCCGTGTTGTCAATGT 60.889 55.000 0.00 0.00 0.00 2.71
4524 5703 0.951558 GAGGCCGTGTTGTCAATGTT 59.048 50.000 0.00 0.00 0.00 2.71
4525 5704 0.667993 AGGCCGTGTTGTCAATGTTG 59.332 50.000 0.00 0.00 0.00 3.33
4526 5705 0.939106 GGCCGTGTTGTCAATGTTGC 60.939 55.000 0.00 0.00 0.00 4.17
4527 5706 0.248825 GCCGTGTTGTCAATGTTGCA 60.249 50.000 0.00 0.00 0.00 4.08
4528 5707 1.757574 CCGTGTTGTCAATGTTGCAG 58.242 50.000 0.00 0.00 0.00 4.41
4529 5708 1.122849 CGTGTTGTCAATGTTGCAGC 58.877 50.000 0.00 0.00 0.00 5.25
4530 5709 1.533547 CGTGTTGTCAATGTTGCAGCA 60.534 47.619 5.46 5.46 0.00 4.41
4531 5710 2.746269 GTGTTGTCAATGTTGCAGCAT 58.254 42.857 10.61 10.61 32.15 3.79
4532 5711 3.608941 CGTGTTGTCAATGTTGCAGCATA 60.609 43.478 16.93 0.00 32.15 3.14
4533 5712 3.670055 GTGTTGTCAATGTTGCAGCATAC 59.330 43.478 16.93 12.42 32.15 2.39
4534 5713 3.317430 TGTTGTCAATGTTGCAGCATACA 59.683 39.130 16.93 14.86 0.00 2.29
4535 5714 4.202090 TGTTGTCAATGTTGCAGCATACAA 60.202 37.500 21.14 21.14 29.82 2.41
4536 5715 4.787260 TGTCAATGTTGCAGCATACAAT 57.213 36.364 16.93 0.00 0.00 2.71
4537 5716 4.487019 TGTCAATGTTGCAGCATACAATG 58.513 39.130 16.93 11.13 0.00 2.82
4538 5717 4.022155 TGTCAATGTTGCAGCATACAATGT 60.022 37.500 16.93 0.00 0.00 2.71
4539 5718 5.182760 TGTCAATGTTGCAGCATACAATGTA 59.817 36.000 16.93 0.00 0.00 2.29
4540 5719 5.740569 GTCAATGTTGCAGCATACAATGTAG 59.259 40.000 16.93 0.68 0.00 2.74
4541 5720 5.415389 TCAATGTTGCAGCATACAATGTAGT 59.585 36.000 16.93 0.00 0.00 2.73
4542 5721 4.944962 TGTTGCAGCATACAATGTAGTC 57.055 40.909 0.00 0.00 0.00 2.59
4543 5722 4.322567 TGTTGCAGCATACAATGTAGTCA 58.677 39.130 0.00 0.00 0.00 3.41
4544 5723 4.759183 TGTTGCAGCATACAATGTAGTCAA 59.241 37.500 0.00 0.00 0.00 3.18
4545 5724 5.106594 TGTTGCAGCATACAATGTAGTCAAG 60.107 40.000 0.00 0.00 0.00 3.02
4546 5725 4.578871 TGCAGCATACAATGTAGTCAAGT 58.421 39.130 0.00 0.00 0.00 3.16
4547 5726 5.003160 TGCAGCATACAATGTAGTCAAGTT 58.997 37.500 0.00 0.00 0.00 2.66
4548 5727 5.473162 TGCAGCATACAATGTAGTCAAGTTT 59.527 36.000 0.00 0.00 0.00 2.66
4549 5728 5.796935 GCAGCATACAATGTAGTCAAGTTTG 59.203 40.000 0.00 0.00 0.00 2.93
4550 5729 5.796935 CAGCATACAATGTAGTCAAGTTTGC 59.203 40.000 0.00 1.50 38.92 3.68
4551 5730 5.707298 AGCATACAATGTAGTCAAGTTTGCT 59.293 36.000 7.74 7.74 41.16 3.91
4552 5731 6.024049 GCATACAATGTAGTCAAGTTTGCTC 58.976 40.000 0.00 0.00 37.48 4.26
4553 5732 6.128172 GCATACAATGTAGTCAAGTTTGCTCT 60.128 38.462 0.00 0.00 37.48 4.09
4554 5733 7.573843 GCATACAATGTAGTCAAGTTTGCTCTT 60.574 37.037 0.00 0.00 37.48 2.85
4555 5734 6.699575 ACAATGTAGTCAAGTTTGCTCTTT 57.300 33.333 0.00 0.00 0.00 2.52
4556 5735 6.729187 ACAATGTAGTCAAGTTTGCTCTTTC 58.271 36.000 0.00 0.00 0.00 2.62
4557 5736 5.597813 ATGTAGTCAAGTTTGCTCTTTCG 57.402 39.130 0.00 0.00 0.00 3.46
4558 5737 4.439057 TGTAGTCAAGTTTGCTCTTTCGT 58.561 39.130 0.00 0.00 0.00 3.85
4559 5738 4.873827 TGTAGTCAAGTTTGCTCTTTCGTT 59.126 37.500 0.00 0.00 0.00 3.85
4560 5739 6.044046 TGTAGTCAAGTTTGCTCTTTCGTTA 58.956 36.000 0.00 0.00 0.00 3.18
4561 5740 5.659048 AGTCAAGTTTGCTCTTTCGTTAG 57.341 39.130 0.00 0.00 0.00 2.34
4562 5741 4.511826 AGTCAAGTTTGCTCTTTCGTTAGG 59.488 41.667 0.00 0.00 0.00 2.69
4563 5742 4.272748 GTCAAGTTTGCTCTTTCGTTAGGT 59.727 41.667 0.00 0.00 0.00 3.08
4564 5743 4.510340 TCAAGTTTGCTCTTTCGTTAGGTC 59.490 41.667 0.00 0.00 0.00 3.85
4565 5744 3.400255 AGTTTGCTCTTTCGTTAGGTCC 58.600 45.455 0.00 0.00 0.00 4.46
4566 5745 2.074547 TTGCTCTTTCGTTAGGTCCG 57.925 50.000 0.00 0.00 0.00 4.79
4567 5746 0.245539 TGCTCTTTCGTTAGGTCCGG 59.754 55.000 0.00 0.00 0.00 5.14
4568 5747 0.459759 GCTCTTTCGTTAGGTCCGGG 60.460 60.000 0.00 0.00 0.00 5.73
4569 5748 1.180029 CTCTTTCGTTAGGTCCGGGA 58.820 55.000 0.00 0.00 0.00 5.14
4570 5749 0.890683 TCTTTCGTTAGGTCCGGGAC 59.109 55.000 19.06 19.06 0.00 4.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
122 123 9.947669 CTTCATGTTTTCCAATTTTGCATTTTA 57.052 25.926 0.00 0.00 0.00 1.52
123 124 8.684520 TCTTCATGTTTTCCAATTTTGCATTTT 58.315 25.926 0.00 0.00 0.00 1.82
124 125 8.223177 TCTTCATGTTTTCCAATTTTGCATTT 57.777 26.923 0.00 0.00 0.00 2.32
125 126 7.804843 TCTTCATGTTTTCCAATTTTGCATT 57.195 28.000 0.00 0.00 0.00 3.56
126 127 7.804843 TTCTTCATGTTTTCCAATTTTGCAT 57.195 28.000 0.00 0.00 0.00 3.96
127 128 7.621428 TTTCTTCATGTTTTCCAATTTTGCA 57.379 28.000 0.00 0.00 0.00 4.08
128 129 8.130469 ACATTTCTTCATGTTTTCCAATTTTGC 58.870 29.630 0.00 0.00 33.29 3.68
141 142 9.796120 TCGTTTTCTTTTAACATTTCTTCATGT 57.204 25.926 0.00 0.00 39.17 3.21
152 153 9.228636 GCTATGTTCTTTCGTTTTCTTTTAACA 57.771 29.630 0.00 0.00 0.00 2.41
153 154 9.447040 AGCTATGTTCTTTCGTTTTCTTTTAAC 57.553 29.630 0.00 0.00 0.00 2.01
156 157 8.837389 ACTAGCTATGTTCTTTCGTTTTCTTTT 58.163 29.630 0.00 0.00 0.00 2.27
157 158 8.379457 ACTAGCTATGTTCTTTCGTTTTCTTT 57.621 30.769 0.00 0.00 0.00 2.52
158 159 7.117956 GGACTAGCTATGTTCTTTCGTTTTCTT 59.882 37.037 0.00 0.00 0.00 2.52
159 160 6.590677 GGACTAGCTATGTTCTTTCGTTTTCT 59.409 38.462 0.00 0.00 0.00 2.52
160 161 6.367969 TGGACTAGCTATGTTCTTTCGTTTTC 59.632 38.462 0.00 0.00 0.00 2.29
161 162 6.228258 TGGACTAGCTATGTTCTTTCGTTTT 58.772 36.000 0.00 0.00 0.00 2.43
162 163 5.790593 TGGACTAGCTATGTTCTTTCGTTT 58.209 37.500 0.00 0.00 0.00 3.60
163 164 5.401531 TGGACTAGCTATGTTCTTTCGTT 57.598 39.130 0.00 0.00 0.00 3.85
164 165 5.401531 TTGGACTAGCTATGTTCTTTCGT 57.598 39.130 0.00 0.00 0.00 3.85
165 166 6.402226 GGTTTTGGACTAGCTATGTTCTTTCG 60.402 42.308 0.00 0.00 0.00 3.46
166 167 6.402226 CGGTTTTGGACTAGCTATGTTCTTTC 60.402 42.308 0.00 0.00 0.00 2.62
167 168 5.411669 CGGTTTTGGACTAGCTATGTTCTTT 59.588 40.000 0.00 0.00 0.00 2.52
168 169 4.935808 CGGTTTTGGACTAGCTATGTTCTT 59.064 41.667 0.00 0.00 0.00 2.52
169 170 4.504858 CGGTTTTGGACTAGCTATGTTCT 58.495 43.478 0.00 0.00 0.00 3.01
170 171 3.621715 CCGGTTTTGGACTAGCTATGTTC 59.378 47.826 0.00 0.00 0.00 3.18
171 172 3.262405 TCCGGTTTTGGACTAGCTATGTT 59.738 43.478 0.00 0.00 31.53 2.71
172 173 2.835764 TCCGGTTTTGGACTAGCTATGT 59.164 45.455 0.00 0.00 31.53 2.29
173 174 3.536956 TCCGGTTTTGGACTAGCTATG 57.463 47.619 0.00 0.00 31.53 2.23
174 175 3.773119 TCTTCCGGTTTTGGACTAGCTAT 59.227 43.478 0.00 0.00 37.89 2.97
175 176 3.167485 TCTTCCGGTTTTGGACTAGCTA 58.833 45.455 0.00 0.00 37.89 3.32
176 177 1.975680 TCTTCCGGTTTTGGACTAGCT 59.024 47.619 0.00 0.00 37.89 3.32
177 178 2.467566 TCTTCCGGTTTTGGACTAGC 57.532 50.000 0.00 0.00 37.89 3.42
178 179 3.501062 GGTTTCTTCCGGTTTTGGACTAG 59.499 47.826 0.00 0.00 37.89 2.57
179 180 3.117963 TGGTTTCTTCCGGTTTTGGACTA 60.118 43.478 0.00 0.00 37.89 2.59
180 181 2.304092 GGTTTCTTCCGGTTTTGGACT 58.696 47.619 0.00 0.00 37.89 3.85
181 182 2.025898 TGGTTTCTTCCGGTTTTGGAC 58.974 47.619 0.00 0.00 37.89 4.02
182 183 2.438800 TGGTTTCTTCCGGTTTTGGA 57.561 45.000 0.00 0.00 35.83 3.53
183 184 3.744238 ATTGGTTTCTTCCGGTTTTGG 57.256 42.857 0.00 0.00 0.00 3.28
184 185 8.819643 TTTATTATTGGTTTCTTCCGGTTTTG 57.180 30.769 0.00 0.00 0.00 2.44
185 186 9.833917 TTTTTATTATTGGTTTCTTCCGGTTTT 57.166 25.926 0.00 0.00 0.00 2.43
209 210 7.872483 CCATTACTTGAGTTTACTGCCATTTTT 59.128 33.333 0.00 0.00 0.00 1.94
210 211 7.378181 CCATTACTTGAGTTTACTGCCATTTT 58.622 34.615 0.00 0.00 0.00 1.82
211 212 6.071391 CCCATTACTTGAGTTTACTGCCATTT 60.071 38.462 0.00 0.00 0.00 2.32
212 213 5.418840 CCCATTACTTGAGTTTACTGCCATT 59.581 40.000 0.00 0.00 0.00 3.16
213 214 4.949856 CCCATTACTTGAGTTTACTGCCAT 59.050 41.667 0.00 0.00 0.00 4.40
214 215 4.331968 CCCATTACTTGAGTTTACTGCCA 58.668 43.478 0.00 0.00 0.00 4.92
215 216 3.128764 GCCCATTACTTGAGTTTACTGCC 59.871 47.826 0.00 0.00 0.00 4.85
216 217 3.128764 GGCCCATTACTTGAGTTTACTGC 59.871 47.826 0.00 0.00 0.00 4.40
217 218 3.694566 GGGCCCATTACTTGAGTTTACTG 59.305 47.826 19.95 0.00 0.00 2.74
218 219 3.332485 TGGGCCCATTACTTGAGTTTACT 59.668 43.478 24.45 0.00 0.00 2.24
219 220 3.692690 TGGGCCCATTACTTGAGTTTAC 58.307 45.455 24.45 0.00 0.00 2.01
220 221 3.332485 ACTGGGCCCATTACTTGAGTTTA 59.668 43.478 28.82 0.00 0.00 2.01
221 222 2.110011 ACTGGGCCCATTACTTGAGTTT 59.890 45.455 28.82 0.00 0.00 2.66
222 223 1.710809 ACTGGGCCCATTACTTGAGTT 59.289 47.619 28.82 0.00 0.00 3.01
223 224 1.282157 GACTGGGCCCATTACTTGAGT 59.718 52.381 28.82 17.61 0.00 3.41
224 225 1.408822 GGACTGGGCCCATTACTTGAG 60.409 57.143 28.82 13.93 0.00 3.02
225 226 0.623723 GGACTGGGCCCATTACTTGA 59.376 55.000 28.82 0.00 0.00 3.02
226 227 0.748005 CGGACTGGGCCCATTACTTG 60.748 60.000 28.82 15.63 0.00 3.16
227 228 1.205460 ACGGACTGGGCCCATTACTT 61.205 55.000 28.82 12.11 0.00 2.24
228 229 1.615424 ACGGACTGGGCCCATTACT 60.615 57.895 28.82 8.17 0.00 2.24
229 230 1.451387 CACGGACTGGGCCCATTAC 60.451 63.158 28.82 21.17 0.00 1.89
230 231 2.675242 CCACGGACTGGGCCCATTA 61.675 63.158 28.82 1.31 36.18 1.90
231 232 4.047125 CCACGGACTGGGCCCATT 62.047 66.667 28.82 22.24 36.18 3.16
234 235 4.410400 CTTCCACGGACTGGGCCC 62.410 72.222 17.59 17.59 41.06 5.80
236 237 3.842925 TTGCTTCCACGGACTGGGC 62.843 63.158 0.00 0.00 41.06 5.36
237 238 0.609131 AATTGCTTCCACGGACTGGG 60.609 55.000 0.00 0.00 41.06 4.45
238 239 0.804989 GAATTGCTTCCACGGACTGG 59.195 55.000 0.00 0.00 42.29 4.00
248 249 1.355971 TGACGCGTAGGAATTGCTTC 58.644 50.000 13.97 0.00 0.00 3.86
249 250 1.665679 CATGACGCGTAGGAATTGCTT 59.334 47.619 13.97 0.00 0.00 3.91
250 251 1.290203 CATGACGCGTAGGAATTGCT 58.710 50.000 13.97 4.41 0.00 3.91
251 252 0.316196 GCATGACGCGTAGGAATTGC 60.316 55.000 13.97 11.55 0.00 3.56
252 253 1.004610 CTGCATGACGCGTAGGAATTG 60.005 52.381 13.97 4.96 46.97 2.32
253 254 1.290203 CTGCATGACGCGTAGGAATT 58.710 50.000 13.97 0.00 46.97 2.17
254 255 0.530650 CCTGCATGACGCGTAGGAAT 60.531 55.000 18.18 4.90 46.97 3.01
255 256 1.153647 CCTGCATGACGCGTAGGAA 60.154 57.895 18.18 2.08 46.97 3.36
256 257 2.494445 CCTGCATGACGCGTAGGA 59.506 61.111 18.18 9.23 46.97 2.94
257 258 2.586079 CCCTGCATGACGCGTAGG 60.586 66.667 13.97 15.53 46.97 3.18
258 259 3.264897 GCCCTGCATGACGCGTAG 61.265 66.667 13.97 5.13 46.97 3.51
259 260 4.830765 GGCCCTGCATGACGCGTA 62.831 66.667 13.97 0.41 46.97 4.42
263 264 3.499737 GAACGGCCCTGCATGACG 61.500 66.667 9.85 9.85 0.00 4.35
264 265 1.926511 CTTGAACGGCCCTGCATGAC 61.927 60.000 0.00 0.00 0.00 3.06
265 266 1.675310 CTTGAACGGCCCTGCATGA 60.675 57.895 0.00 0.00 0.00 3.07
266 267 2.703798 CCTTGAACGGCCCTGCATG 61.704 63.158 0.00 0.00 0.00 4.06
267 268 2.361610 CCTTGAACGGCCCTGCAT 60.362 61.111 0.00 0.00 0.00 3.96
268 269 4.659172 CCCTTGAACGGCCCTGCA 62.659 66.667 0.00 0.00 0.00 4.41
279 280 2.747460 GCTCGCACATGCCCTTGA 60.747 61.111 0.00 0.00 37.91 3.02
494 514 0.691078 AGGCAGGGAATAGGAAGCGA 60.691 55.000 0.00 0.00 0.00 4.93
762 1724 6.072175 TCCCAAACATATTAACACAACTCTGC 60.072 38.462 0.00 0.00 0.00 4.26
818 1780 7.378966 TGAAATTCTCGAATCTGTGACTACTT 58.621 34.615 0.00 0.00 0.00 2.24
819 1781 6.925211 TGAAATTCTCGAATCTGTGACTACT 58.075 36.000 0.00 0.00 0.00 2.57
820 1782 6.809196 ACTGAAATTCTCGAATCTGTGACTAC 59.191 38.462 0.00 0.00 0.00 2.73
1128 2286 8.910944 CCATCTGGAGTATGATTTTCAGAATTT 58.089 33.333 0.00 0.00 35.33 1.82
1369 2528 6.068853 TCAAGTCCATCCCAATTTCTAGGATT 60.069 38.462 0.00 0.00 38.36 3.01
1896 3060 4.130118 CAATCAGTCCTAGGAAATTCCCG 58.870 47.826 14.65 0.01 37.19 5.14
2021 3186 3.546815 GGCAGTAGCGAGCATGTTTATTG 60.547 47.826 0.00 0.00 43.41 1.90
2170 3335 4.999950 AGATTCTTCGATGCAAACAGAAGT 59.000 37.500 17.33 5.65 40.49 3.01
2256 3422 7.225538 ACATCAAGGCTAAGATTATTCAACTCG 59.774 37.037 0.00 0.00 0.00 4.18
2361 3527 5.760484 AAAATGCCCTTGGATATTTGTGT 57.240 34.783 0.00 0.00 0.00 3.72
2362 3528 7.986320 TGAATAAAATGCCCTTGGATATTTGTG 59.014 33.333 0.00 0.00 0.00 3.33
2561 3728 4.498894 TGACTCTCCCAACGAGTAGATA 57.501 45.455 0.00 0.00 41.53 1.98
2642 3809 3.942829 TCCTTATCAGTTTCAGCCACTG 58.057 45.455 0.00 0.00 42.74 3.66
2867 4034 3.465871 TCCAATGCTTTTGAAAAGCCAC 58.534 40.909 32.31 12.29 42.36 5.01
2954 4123 5.293079 CCCTCATCGAATTGTCTTCTTCTTC 59.707 44.000 0.00 0.00 0.00 2.87
3693 4866 8.415950 AAAATGGGGCCCTAAATTTTAAAAAG 57.584 30.769 27.57 0.00 32.05 2.27
3771 4947 2.202905 TTTGGACGTCCGTTGCGT 60.203 55.556 28.70 0.00 45.86 5.24
3772 4948 1.837538 ATGTTTGGACGTCCGTTGCG 61.838 55.000 28.70 0.00 39.43 4.85
3791 4967 1.327303 GGCAACACCCTGACAAATCA 58.673 50.000 0.00 0.00 0.00 2.57
3828 5004 3.737774 CGAATATGTCATGTGTCGAGCAT 59.262 43.478 8.23 0.00 0.00 3.79
3851 5027 4.141883 GCACATGCTGCAAGAACG 57.858 55.556 12.28 1.05 46.29 3.95
3876 5052 2.028420 TGAGTGCCTCCATGAATTCG 57.972 50.000 0.04 0.00 0.00 3.34
3878 5054 4.885907 CACTAATGAGTGCCTCCATGAATT 59.114 41.667 0.00 0.00 46.41 2.17
3891 5067 5.012239 ACATTGTGCATTCCACTAATGAGT 58.988 37.500 17.25 0.00 46.81 3.41
3892 5068 5.124297 TGACATTGTGCATTCCACTAATGAG 59.876 40.000 17.25 0.00 46.81 2.90
3893 5069 5.008980 TGACATTGTGCATTCCACTAATGA 58.991 37.500 17.25 3.13 46.81 2.57
3894 5070 5.313520 TGACATTGTGCATTCCACTAATG 57.686 39.130 0.00 12.57 46.62 1.90
3895 5071 5.711506 TCTTGACATTGTGCATTCCACTAAT 59.288 36.000 0.00 0.00 44.92 1.73
3896 5072 5.069318 TCTTGACATTGTGCATTCCACTAA 58.931 37.500 0.00 0.00 44.92 2.24
3897 5073 4.650734 TCTTGACATTGTGCATTCCACTA 58.349 39.130 0.00 0.00 44.92 2.74
3898 5074 3.489355 TCTTGACATTGTGCATTCCACT 58.511 40.909 0.00 0.00 44.92 4.00
3899 5075 3.921119 TCTTGACATTGTGCATTCCAC 57.079 42.857 0.00 0.00 44.90 4.02
3900 5076 3.827876 ACATCTTGACATTGTGCATTCCA 59.172 39.130 0.00 0.00 0.00 3.53
3901 5077 4.445452 ACATCTTGACATTGTGCATTCC 57.555 40.909 0.00 0.00 0.00 3.01
3902 5078 5.941733 TGTACATCTTGACATTGTGCATTC 58.058 37.500 0.00 0.00 32.24 2.67
3903 5079 5.963176 TGTACATCTTGACATTGTGCATT 57.037 34.783 0.00 0.00 32.24 3.56
3904 5080 5.163591 CCATGTACATCTTGACATTGTGCAT 60.164 40.000 5.07 9.78 44.15 3.96
3905 5081 4.156373 CCATGTACATCTTGACATTGTGCA 59.844 41.667 5.07 6.84 39.66 4.57
3906 5082 4.439153 CCCATGTACATCTTGACATTGTGC 60.439 45.833 5.07 0.00 34.01 4.57
3907 5083 4.439153 GCCCATGTACATCTTGACATTGTG 60.439 45.833 5.07 0.00 34.01 3.33
3908 5084 3.696051 GCCCATGTACATCTTGACATTGT 59.304 43.478 5.07 0.00 34.01 2.71
3909 5085 3.242837 CGCCCATGTACATCTTGACATTG 60.243 47.826 5.07 0.00 34.01 2.82
3910 5086 2.945008 CGCCCATGTACATCTTGACATT 59.055 45.455 5.07 0.00 34.01 2.71
3911 5087 2.092968 ACGCCCATGTACATCTTGACAT 60.093 45.455 5.07 0.00 36.73 3.06
3912 5088 1.277842 ACGCCCATGTACATCTTGACA 59.722 47.619 5.07 0.00 0.00 3.58
3913 5089 2.024176 ACGCCCATGTACATCTTGAC 57.976 50.000 5.07 0.00 0.00 3.18
3914 5090 2.355197 CAACGCCCATGTACATCTTGA 58.645 47.619 5.07 0.00 0.00 3.02
3915 5091 1.401552 CCAACGCCCATGTACATCTTG 59.598 52.381 5.07 0.00 0.00 3.02
3916 5092 1.004277 ACCAACGCCCATGTACATCTT 59.996 47.619 5.07 0.00 0.00 2.40
3917 5093 0.618458 ACCAACGCCCATGTACATCT 59.382 50.000 5.07 0.00 0.00 2.90
3918 5094 0.732571 CACCAACGCCCATGTACATC 59.267 55.000 5.07 0.00 0.00 3.06
3919 5095 0.679640 CCACCAACGCCCATGTACAT 60.680 55.000 1.41 1.41 0.00 2.29
3920 5096 1.302913 CCACCAACGCCCATGTACA 60.303 57.895 0.00 0.00 0.00 2.90
3921 5097 0.393808 ATCCACCAACGCCCATGTAC 60.394 55.000 0.00 0.00 0.00 2.90
3922 5098 0.393673 CATCCACCAACGCCCATGTA 60.394 55.000 0.00 0.00 0.00 2.29
3923 5099 1.678635 CATCCACCAACGCCCATGT 60.679 57.895 0.00 0.00 0.00 3.21
3931 5107 2.827921 AGCCAATTCTTCATCCACCAAC 59.172 45.455 0.00 0.00 0.00 3.77
3943 5119 5.222048 TGTTACTAGGGTTTGAGCCAATTCT 60.222 40.000 0.00 0.00 38.48 2.40
3957 5133 4.710324 TGGTTCAGTTGTTGTTACTAGGG 58.290 43.478 0.00 0.00 0.00 3.53
3974 5151 1.866601 GCCACTGTTTTGCATTGGTTC 59.133 47.619 5.69 0.00 46.19 3.62
3975 5152 1.485895 AGCCACTGTTTTGCATTGGTT 59.514 42.857 5.69 0.00 46.19 3.67
3976 5153 1.069049 GAGCCACTGTTTTGCATTGGT 59.931 47.619 5.69 0.00 46.19 3.67
3978 5155 2.806608 AGAGCCACTGTTTTGCATTG 57.193 45.000 0.00 0.00 0.00 2.82
3981 5158 3.287222 AGTAAAGAGCCACTGTTTTGCA 58.713 40.909 0.00 0.00 29.87 4.08
3982 5159 3.565902 AGAGTAAAGAGCCACTGTTTTGC 59.434 43.478 0.00 0.00 29.87 3.68
3983 5160 4.816385 TGAGAGTAAAGAGCCACTGTTTTG 59.184 41.667 0.00 0.00 29.87 2.44
3984 5161 5.036117 TGAGAGTAAAGAGCCACTGTTTT 57.964 39.130 0.00 0.00 29.87 2.43
3985 5162 4.689612 TGAGAGTAAAGAGCCACTGTTT 57.310 40.909 0.00 0.00 31.94 2.83
3986 5163 4.564406 CCATGAGAGTAAAGAGCCACTGTT 60.564 45.833 0.00 0.00 0.00 3.16
4032 5209 1.512926 AAGTGCCTAAGTGCTTCACG 58.487 50.000 0.00 0.00 39.64 4.35
4040 5217 0.771127 TGCCCAGAAAGTGCCTAAGT 59.229 50.000 0.00 0.00 0.00 2.24
4046 5223 1.410153 CCCATATTGCCCAGAAAGTGC 59.590 52.381 0.00 0.00 0.00 4.40
4051 5228 0.756442 GCTGCCCATATTGCCCAGAA 60.756 55.000 0.00 0.00 0.00 3.02
4053 5230 1.456145 TGCTGCCCATATTGCCCAG 60.456 57.895 0.00 0.00 0.00 4.45
4066 5243 4.077188 GTCCTTGTCGCGTGCTGC 62.077 66.667 5.77 0.00 41.47 5.25
4072 5249 0.460109 TCATGGATGTCCTTGTCGCG 60.460 55.000 0.00 0.00 40.77 5.87
4075 5252 2.093288 TGCTCTCATGGATGTCCTTGTC 60.093 50.000 12.89 4.56 40.77 3.18
4076 5253 1.911357 TGCTCTCATGGATGTCCTTGT 59.089 47.619 12.89 0.00 40.77 3.16
4102 5279 6.494666 ACGATGAATAGATTGGGGACTTTA 57.505 37.500 0.00 0.00 0.00 1.85
4123 5300 3.431912 TCGATGAACCTGTTGATGAAACG 59.568 43.478 0.00 0.00 42.10 3.60
4127 5304 4.081476 ACTCATCGATGAACCTGTTGATGA 60.081 41.667 27.09 3.06 40.96 2.92
4128 5305 4.186926 ACTCATCGATGAACCTGTTGATG 58.813 43.478 27.09 14.46 37.51 3.07
4129 5306 4.478206 ACTCATCGATGAACCTGTTGAT 57.522 40.909 27.09 4.25 36.18 2.57
4130 5307 3.961480 ACTCATCGATGAACCTGTTGA 57.039 42.857 27.09 4.53 36.18 3.18
4147 5324 7.824672 AGAATTTCTTTGATCATGTCCAACTC 58.175 34.615 0.00 0.00 0.00 3.01
4148 5325 7.771927 AGAATTTCTTTGATCATGTCCAACT 57.228 32.000 0.00 0.00 0.00 3.16
4154 5331 7.771927 ACTGGAAGAATTTCTTTGATCATGT 57.228 32.000 12.73 3.93 36.73 3.21
4161 5338 7.013655 TGAGAAGGAACTGGAAGAATTTCTTTG 59.986 37.037 12.73 8.96 40.86 2.77
4195 5372 2.909662 TGTTGACCACTGGTATGGATGA 59.090 45.455 0.00 0.00 43.02 2.92
4225 5402 4.015872 AGTCCATTGGCGAGACTTTTTA 57.984 40.909 0.00 0.00 37.60 1.52
4226 5403 2.863809 AGTCCATTGGCGAGACTTTTT 58.136 42.857 0.00 0.00 37.60 1.94
4231 5408 1.221414 GCATAGTCCATTGGCGAGAC 58.779 55.000 0.00 0.00 0.00 3.36
4232 5409 0.829990 TGCATAGTCCATTGGCGAGA 59.170 50.000 0.00 0.00 0.00 4.04
4234 5411 2.121291 TTTGCATAGTCCATTGGCGA 57.879 45.000 0.00 0.00 0.00 5.54
4243 5420 5.229887 CGTTGGCATGTATTTTTGCATAGTC 59.770 40.000 0.00 0.00 40.66 2.59
4244 5421 5.101628 CGTTGGCATGTATTTTTGCATAGT 58.898 37.500 0.00 0.00 40.66 2.12
4262 5439 1.803334 TCCTTTCGACATTCCGTTGG 58.197 50.000 0.00 0.00 0.00 3.77
4267 5444 3.883489 CCCCTATTTCCTTTCGACATTCC 59.117 47.826 0.00 0.00 0.00 3.01
4268 5445 3.883489 CCCCCTATTTCCTTTCGACATTC 59.117 47.826 0.00 0.00 0.00 2.67
4293 5472 2.285977 CAAACCGCAATAGTAGACCCC 58.714 52.381 0.00 0.00 0.00 4.95
4294 5473 1.669265 GCAAACCGCAATAGTAGACCC 59.331 52.381 0.00 0.00 41.79 4.46
4306 5485 3.681897 CCATCTATATCTCTGCAAACCGC 59.318 47.826 0.00 0.00 42.89 5.68
4307 5486 4.887748 ACCATCTATATCTCTGCAAACCG 58.112 43.478 0.00 0.00 0.00 4.44
4308 5487 6.014156 AGGTACCATCTATATCTCTGCAAACC 60.014 42.308 15.94 0.00 0.00 3.27
4309 5488 6.998802 AGGTACCATCTATATCTCTGCAAAC 58.001 40.000 15.94 0.00 0.00 2.93
4310 5489 8.901472 ATAGGTACCATCTATATCTCTGCAAA 57.099 34.615 15.94 0.00 0.00 3.68
4311 5490 8.901472 AATAGGTACCATCTATATCTCTGCAA 57.099 34.615 15.94 0.00 0.00 4.08
4312 5491 8.753133 CAAATAGGTACCATCTATATCTCTGCA 58.247 37.037 15.94 0.00 0.00 4.41
4313 5492 8.200792 CCAAATAGGTACCATCTATATCTCTGC 58.799 40.741 15.94 0.00 0.00 4.26
4314 5493 8.700051 CCCAAATAGGTACCATCTATATCTCTG 58.300 40.741 15.94 2.19 34.66 3.35
4315 5494 8.410623 ACCCAAATAGGTACCATCTATATCTCT 58.589 37.037 15.94 0.00 38.79 3.10
4322 5501 5.723355 AGCTACCCAAATAGGTACCATCTA 58.277 41.667 15.94 0.00 41.58 1.98
4328 5507 3.388350 AGCTGAGCTACCCAAATAGGTAC 59.612 47.826 4.49 0.00 41.58 3.34
4347 5526 3.886505 CGACTCCTCCTATAACAAGAGCT 59.113 47.826 0.00 0.00 0.00 4.09
4349 5528 5.765677 TCATCGACTCCTCCTATAACAAGAG 59.234 44.000 0.00 0.00 0.00 2.85
4364 5543 4.142600 CCAAAACCAAAGGATCATCGACTC 60.143 45.833 0.00 0.00 0.00 3.36
4373 5552 2.397044 TGCCTCCAAAACCAAAGGAT 57.603 45.000 0.00 0.00 0.00 3.24
4379 5558 3.132646 GCATGATATTGCCTCCAAAACCA 59.867 43.478 0.00 0.00 36.60 3.67
4381 5560 4.098349 TCTGCATGATATTGCCTCCAAAAC 59.902 41.667 0.00 0.00 42.06 2.43
4396 5575 1.406065 GCTAGGGCCTCTCTGCATGA 61.406 60.000 10.74 0.00 0.00 3.07
4398 5577 1.074623 AGCTAGGGCCTCTCTGCAT 60.075 57.895 10.74 0.00 39.73 3.96
4404 5583 0.469144 GTGCTAGAGCTAGGGCCTCT 60.469 60.000 10.74 0.29 42.66 3.69
4409 5588 3.230134 AGATCTTGTGCTAGAGCTAGGG 58.770 50.000 2.72 0.00 39.01 3.53
4414 5593 2.542824 GGTCGAGATCTTGTGCTAGAGC 60.543 54.545 9.87 0.00 42.50 4.09
4426 5605 1.482593 ACCATTGTGGAGGTCGAGATC 59.517 52.381 2.45 0.00 40.96 2.75
4432 5611 1.276989 TCGGTAACCATTGTGGAGGTC 59.723 52.381 2.45 0.00 40.96 3.85
4440 5619 2.107950 TCTTGCCTCGGTAACCATTG 57.892 50.000 0.00 0.00 0.00 2.82
4444 5623 1.065709 TCCATTCTTGCCTCGGTAACC 60.066 52.381 0.00 0.00 0.00 2.85
4445 5624 2.280628 CTCCATTCTTGCCTCGGTAAC 58.719 52.381 0.00 0.00 0.00 2.50
4446 5625 1.406887 GCTCCATTCTTGCCTCGGTAA 60.407 52.381 0.00 0.00 0.00 2.85
4447 5626 0.178068 GCTCCATTCTTGCCTCGGTA 59.822 55.000 0.00 0.00 0.00 4.02
4448 5627 1.078143 GCTCCATTCTTGCCTCGGT 60.078 57.895 0.00 0.00 0.00 4.69
4449 5628 1.821332 GGCTCCATTCTTGCCTCGG 60.821 63.158 0.00 0.00 43.05 4.63
4450 5629 0.465097 ATGGCTCCATTCTTGCCTCG 60.465 55.000 0.00 0.00 46.23 4.63
4451 5630 1.772836 AATGGCTCCATTCTTGCCTC 58.227 50.000 8.27 0.00 46.23 4.70
4452 5631 3.117398 TGATAATGGCTCCATTCTTGCCT 60.117 43.478 16.68 0.00 44.50 4.75
4453 5632 3.225104 TGATAATGGCTCCATTCTTGCC 58.775 45.455 16.68 0.00 44.50 4.52
4454 5633 3.887716 ACTGATAATGGCTCCATTCTTGC 59.112 43.478 16.68 6.69 44.50 4.01
4455 5634 5.128205 TCACTGATAATGGCTCCATTCTTG 58.872 41.667 16.68 9.07 44.50 3.02
4456 5635 5.131642 TCTCACTGATAATGGCTCCATTCTT 59.868 40.000 16.68 7.00 44.50 2.52
4457 5636 4.657504 TCTCACTGATAATGGCTCCATTCT 59.342 41.667 16.68 8.19 44.50 2.40
4458 5637 4.965814 TCTCACTGATAATGGCTCCATTC 58.034 43.478 16.68 5.65 44.50 2.67
4459 5638 5.579753 ATCTCACTGATAATGGCTCCATT 57.420 39.130 17.25 17.25 46.85 3.16
4460 5639 6.692849 TTATCTCACTGATAATGGCTCCAT 57.307 37.500 0.00 0.00 41.28 3.41
4461 5640 6.499106 TTTATCTCACTGATAATGGCTCCA 57.501 37.500 0.00 0.00 44.36 3.86
4462 5641 7.393216 AGATTTATCTCACTGATAATGGCTCC 58.607 38.462 0.00 0.00 44.36 4.70
4463 5642 8.845413 AAGATTTATCTCACTGATAATGGCTC 57.155 34.615 0.00 0.00 44.36 4.70
4464 5643 8.435187 TGAAGATTTATCTCACTGATAATGGCT 58.565 33.333 0.00 0.00 44.36 4.75
4465 5644 8.613060 TGAAGATTTATCTCACTGATAATGGC 57.387 34.615 0.00 0.00 44.36 4.40
4468 5647 9.842775 TGCTTGAAGATTTATCTCACTGATAAT 57.157 29.630 0.00 0.00 44.36 1.28
4469 5648 9.842775 ATGCTTGAAGATTTATCTCACTGATAA 57.157 29.630 0.00 0.00 43.59 1.75
4470 5649 9.486497 GATGCTTGAAGATTTATCTCACTGATA 57.514 33.333 0.00 0.00 35.76 2.15
4471 5650 8.212312 AGATGCTTGAAGATTTATCTCACTGAT 58.788 33.333 0.00 0.00 35.76 2.90
4472 5651 7.563020 AGATGCTTGAAGATTTATCTCACTGA 58.437 34.615 0.00 0.00 35.76 3.41
4473 5652 7.789273 AGATGCTTGAAGATTTATCTCACTG 57.211 36.000 0.00 0.00 35.76 3.66
4474 5653 8.703743 AGTAGATGCTTGAAGATTTATCTCACT 58.296 33.333 0.00 2.40 35.76 3.41
4475 5654 8.885494 AGTAGATGCTTGAAGATTTATCTCAC 57.115 34.615 0.00 0.53 35.76 3.51
4476 5655 9.896645 AAAGTAGATGCTTGAAGATTTATCTCA 57.103 29.630 0.00 0.00 35.76 3.27
4478 5657 9.039870 CGAAAGTAGATGCTTGAAGATTTATCT 57.960 33.333 0.00 2.09 39.22 1.98
4479 5658 8.279103 CCGAAAGTAGATGCTTGAAGATTTATC 58.721 37.037 0.00 0.00 0.00 1.75
4480 5659 7.987458 TCCGAAAGTAGATGCTTGAAGATTTAT 59.013 33.333 0.00 0.00 0.00 1.40
4481 5660 7.327975 TCCGAAAGTAGATGCTTGAAGATTTA 58.672 34.615 0.00 0.00 0.00 1.40
4482 5661 6.173339 TCCGAAAGTAGATGCTTGAAGATTT 58.827 36.000 0.00 0.00 0.00 2.17
4483 5662 5.734720 TCCGAAAGTAGATGCTTGAAGATT 58.265 37.500 0.00 0.00 0.00 2.40
4484 5663 5.344743 TCCGAAAGTAGATGCTTGAAGAT 57.655 39.130 0.00 0.00 0.00 2.40
4485 5664 4.382040 CCTCCGAAAGTAGATGCTTGAAGA 60.382 45.833 0.00 0.00 0.00 2.87
4486 5665 3.868077 CCTCCGAAAGTAGATGCTTGAAG 59.132 47.826 0.00 0.00 0.00 3.02
4487 5666 3.861840 CCTCCGAAAGTAGATGCTTGAA 58.138 45.455 0.00 0.00 0.00 2.69
4488 5667 2.418746 GCCTCCGAAAGTAGATGCTTGA 60.419 50.000 0.00 0.00 0.00 3.02
4489 5668 1.936547 GCCTCCGAAAGTAGATGCTTG 59.063 52.381 0.00 0.00 0.00 4.01
4490 5669 1.134371 GGCCTCCGAAAGTAGATGCTT 60.134 52.381 0.00 0.00 0.00 3.91
4491 5670 0.466124 GGCCTCCGAAAGTAGATGCT 59.534 55.000 0.00 0.00 0.00 3.79
4492 5671 2.993539 GGCCTCCGAAAGTAGATGC 58.006 57.895 0.00 0.00 0.00 3.91
4504 5683 0.889186 ACATTGACAACACGGCCTCC 60.889 55.000 0.00 0.00 0.00 4.30
4505 5684 0.951558 AACATTGACAACACGGCCTC 59.048 50.000 0.00 0.00 0.00 4.70
4506 5685 0.667993 CAACATTGACAACACGGCCT 59.332 50.000 0.00 0.00 0.00 5.19
4507 5686 0.939106 GCAACATTGACAACACGGCC 60.939 55.000 0.00 0.00 0.00 6.13
4508 5687 0.248825 TGCAACATTGACAACACGGC 60.249 50.000 0.00 0.00 0.00 5.68
4509 5688 1.757574 CTGCAACATTGACAACACGG 58.242 50.000 0.00 0.00 0.00 4.94
4510 5689 1.122849 GCTGCAACATTGACAACACG 58.877 50.000 0.00 0.00 0.00 4.49
4511 5690 2.206815 TGCTGCAACATTGACAACAC 57.793 45.000 0.00 0.00 0.00 3.32
4512 5691 3.317430 TGTATGCTGCAACATTGACAACA 59.683 39.130 8.09 3.31 0.00 3.33
4513 5692 3.899734 TGTATGCTGCAACATTGACAAC 58.100 40.909 8.09 0.54 0.00 3.32
4514 5693 4.581077 TTGTATGCTGCAACATTGACAA 57.419 36.364 8.09 10.65 30.03 3.18
4515 5694 4.022155 ACATTGTATGCTGCAACATTGACA 60.022 37.500 26.88 4.79 33.41 3.58
4516 5695 4.487948 ACATTGTATGCTGCAACATTGAC 58.512 39.130 26.88 2.02 33.41 3.18
4517 5696 4.787260 ACATTGTATGCTGCAACATTGA 57.213 36.364 26.88 13.67 33.41 2.57
4518 5697 5.643664 ACTACATTGTATGCTGCAACATTG 58.356 37.500 22.84 22.84 34.65 2.82
4519 5698 5.415389 TGACTACATTGTATGCTGCAACATT 59.585 36.000 8.09 6.49 0.00 2.71
4520 5699 4.943093 TGACTACATTGTATGCTGCAACAT 59.057 37.500 6.36 7.87 0.00 2.71
4521 5700 4.322567 TGACTACATTGTATGCTGCAACA 58.677 39.130 6.36 9.83 0.00 3.33
4522 5701 4.944962 TGACTACATTGTATGCTGCAAC 57.055 40.909 6.36 7.20 0.00 4.17
4523 5702 5.003160 ACTTGACTACATTGTATGCTGCAA 58.997 37.500 6.36 0.00 0.00 4.08
4524 5703 4.578871 ACTTGACTACATTGTATGCTGCA 58.421 39.130 4.13 4.13 0.00 4.41
4525 5704 5.551760 AACTTGACTACATTGTATGCTGC 57.448 39.130 0.00 0.00 0.00 5.25
4526 5705 5.796935 GCAAACTTGACTACATTGTATGCTG 59.203 40.000 0.00 0.00 0.00 4.41
4527 5706 5.707298 AGCAAACTTGACTACATTGTATGCT 59.293 36.000 10.12 10.12 34.68 3.79
4528 5707 5.942872 AGCAAACTTGACTACATTGTATGC 58.057 37.500 0.00 2.23 0.00 3.14
4529 5708 7.369803 AGAGCAAACTTGACTACATTGTATG 57.630 36.000 0.00 0.00 0.00 2.39
4530 5709 7.986085 AAGAGCAAACTTGACTACATTGTAT 57.014 32.000 0.00 0.00 0.00 2.29
4531 5710 7.307160 CGAAAGAGCAAACTTGACTACATTGTA 60.307 37.037 0.00 0.00 0.00 2.41
4532 5711 6.511767 CGAAAGAGCAAACTTGACTACATTGT 60.512 38.462 0.00 0.00 0.00 2.71
4533 5712 5.848036 CGAAAGAGCAAACTTGACTACATTG 59.152 40.000 0.00 0.00 0.00 2.82
4534 5713 5.527582 ACGAAAGAGCAAACTTGACTACATT 59.472 36.000 0.00 0.00 0.00 2.71
4535 5714 5.057149 ACGAAAGAGCAAACTTGACTACAT 58.943 37.500 0.00 0.00 0.00 2.29
4536 5715 4.439057 ACGAAAGAGCAAACTTGACTACA 58.561 39.130 0.00 0.00 0.00 2.74
4537 5716 5.405331 AACGAAAGAGCAAACTTGACTAC 57.595 39.130 0.00 0.00 0.00 2.73
4538 5717 5.694910 CCTAACGAAAGAGCAAACTTGACTA 59.305 40.000 0.00 0.00 0.00 2.59
4539 5718 4.511826 CCTAACGAAAGAGCAAACTTGACT 59.488 41.667 0.00 0.00 0.00 3.41
4540 5719 4.272748 ACCTAACGAAAGAGCAAACTTGAC 59.727 41.667 0.00 0.00 0.00 3.18
4541 5720 4.448210 ACCTAACGAAAGAGCAAACTTGA 58.552 39.130 0.00 0.00 0.00 3.02
4542 5721 4.319549 GGACCTAACGAAAGAGCAAACTTG 60.320 45.833 0.00 0.00 0.00 3.16
4543 5722 3.813724 GGACCTAACGAAAGAGCAAACTT 59.186 43.478 0.00 0.00 0.00 2.66
4544 5723 3.400255 GGACCTAACGAAAGAGCAAACT 58.600 45.455 0.00 0.00 0.00 2.66
4545 5724 2.157085 CGGACCTAACGAAAGAGCAAAC 59.843 50.000 0.00 0.00 0.00 2.93
4546 5725 2.409975 CGGACCTAACGAAAGAGCAAA 58.590 47.619 0.00 0.00 0.00 3.68
4547 5726 1.337447 CCGGACCTAACGAAAGAGCAA 60.337 52.381 0.00 0.00 0.00 3.91
4548 5727 0.245539 CCGGACCTAACGAAAGAGCA 59.754 55.000 0.00 0.00 0.00 4.26
4549 5728 0.459759 CCCGGACCTAACGAAAGAGC 60.460 60.000 0.73 0.00 0.00 4.09
4550 5729 1.135170 GTCCCGGACCTAACGAAAGAG 60.135 57.143 0.73 0.00 0.00 2.85
4551 5730 0.890683 GTCCCGGACCTAACGAAAGA 59.109 55.000 0.73 0.00 0.00 2.52
4552 5731 0.457337 CGTCCCGGACCTAACGAAAG 60.457 60.000 12.16 0.00 37.31 2.62
4553 5732 0.893270 TCGTCCCGGACCTAACGAAA 60.893 55.000 12.16 0.00 40.79 3.46
4554 5733 0.680921 ATCGTCCCGGACCTAACGAA 60.681 55.000 12.16 0.00 45.93 3.85
4555 5734 1.077501 ATCGTCCCGGACCTAACGA 60.078 57.895 12.16 10.65 46.73 3.85
4556 5735 1.358046 GATCGTCCCGGACCTAACG 59.642 63.158 12.16 4.94 36.50 3.18
4557 5736 1.038280 ATGATCGTCCCGGACCTAAC 58.962 55.000 12.16 0.44 0.00 2.34
4558 5737 3.526211 ATGATCGTCCCGGACCTAA 57.474 52.632 12.16 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.