Multiple sequence alignment - TraesCS1B01G206800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G206800 chr1B 100.000 2519 0 0 1 2519 374018099 374015581 0.000000e+00 4652
1 TraesCS1B01G206800 chr1B 100.000 141 0 0 2802 2942 374015298 374015158 8.090000e-66 261
2 TraesCS1B01G206800 chr1A 93.111 1771 62 28 384 2127 347321753 347320016 0.000000e+00 2540
3 TraesCS1B01G206800 chr1A 95.965 347 8 3 20 362 347322193 347321849 2.560000e-155 558
4 TraesCS1B01G206800 chr1A 91.150 113 5 4 2802 2914 548496695 548496588 6.570000e-32 148
5 TraesCS1B01G206800 chr1D 93.178 1759 63 23 365 2090 274467762 274466028 0.000000e+00 2531
6 TraesCS1B01G206800 chr1D 95.777 521 17 3 1043 1558 442449993 442450513 0.000000e+00 835
7 TraesCS1B01G206800 chr1D 97.297 407 11 0 1043 1449 430066948 430066542 0.000000e+00 691
8 TraesCS1B01G206800 chr1D 94.851 369 16 3 9 376 274468164 274467798 9.150000e-160 573
9 TraesCS1B01G206800 chr1D 88.776 98 6 3 1466 1558 430066222 430066125 6.660000e-22 115
10 TraesCS1B01G206800 chr7B 92.289 402 21 8 2120 2519 706744496 706744889 1.980000e-156 562
11 TraesCS1B01G206800 chr7B 89.197 361 27 8 2158 2517 7134045 7133696 9.680000e-120 440
12 TraesCS1B01G206800 chr7B 97.163 141 4 0 2802 2942 706744927 706745067 3.790000e-59 239
13 TraesCS1B01G206800 chr5B 88.636 396 37 5 2126 2519 7139030 7139419 2.650000e-130 475
14 TraesCS1B01G206800 chr6A 89.521 334 30 4 2166 2499 187762095 187761767 4.530000e-113 418
15 TraesCS1B01G206800 chr7A 88.630 343 28 8 2177 2519 686320893 686320562 9.820000e-110 407
16 TraesCS1B01G206800 chr3D 91.549 284 19 5 2236 2519 400265016 400265294 1.280000e-103 387
17 TraesCS1B01G206800 chr6B 95.397 239 11 0 2126 2364 72325361 72325123 5.950000e-102 381
18 TraesCS1B01G206800 chr6B 94.979 239 12 0 2126 2364 72316974 72316736 2.770000e-100 375
19 TraesCS1B01G206800 chrUn 94.979 239 12 0 2126 2364 357719596 357719834 2.770000e-100 375
20 TraesCS1B01G206800 chrUn 94.979 239 12 0 2126 2364 358531350 358531588 2.770000e-100 375


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G206800 chr1B 374015158 374018099 2941 True 2456.5 4652 100.0000 1 2942 2 chr1B.!!$R1 2941
1 TraesCS1B01G206800 chr1A 347320016 347322193 2177 True 1549.0 2540 94.5380 20 2127 2 chr1A.!!$R2 2107
2 TraesCS1B01G206800 chr1D 274466028 274468164 2136 True 1552.0 2531 94.0145 9 2090 2 chr1D.!!$R1 2081
3 TraesCS1B01G206800 chr1D 442449993 442450513 520 False 835.0 835 95.7770 1043 1558 1 chr1D.!!$F1 515
4 TraesCS1B01G206800 chr1D 430066125 430066948 823 True 403.0 691 93.0365 1043 1558 2 chr1D.!!$R2 515
5 TraesCS1B01G206800 chr7B 706744496 706745067 571 False 400.5 562 94.7260 2120 2942 2 chr7B.!!$F1 822

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
951 1051 0.041576 GCAAAGCAAAGCAAAGCAGC 60.042 50.0 0.0 0.0 0.0 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2262 2698 0.109412 ATCGAACGGTTGGAGACGAC 60.109 55.0 11.2 0.0 44.59 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
212 216 1.004044 CTTGGCATCTGAACCACCTCT 59.996 52.381 2.54 0.00 35.10 3.69
345 350 6.887002 AGTCAAGGTAATTCTCTTCCATTTCC 59.113 38.462 0.00 0.00 0.00 3.13
362 367 3.197790 CTCCTGTGAATGCCCGCG 61.198 66.667 0.00 0.00 0.00 6.46
387 474 1.730612 CAGATTCATCGGATGCGATGG 59.269 52.381 38.13 23.59 44.04 3.51
394 481 1.651987 TCGGATGCGATGGTCTTTTC 58.348 50.000 4.75 0.00 0.00 2.29
419 506 1.881973 TCTTGCTGAATGTGCCTTGTC 59.118 47.619 0.00 0.00 0.00 3.18
420 507 0.961019 TTGCTGAATGTGCCTTGTCC 59.039 50.000 0.00 0.00 0.00 4.02
452 540 4.094739 GCACAAACAAATCCAAAGCTTTGT 59.905 37.500 31.67 16.08 45.03 2.83
468 556 6.107901 AGCTTTGTTGATCTAGTTGAGACT 57.892 37.500 0.00 0.00 36.87 3.24
469 557 6.529220 AGCTTTGTTGATCTAGTTGAGACTT 58.471 36.000 0.00 0.00 36.87 3.01
470 558 6.426328 AGCTTTGTTGATCTAGTTGAGACTTG 59.574 38.462 0.00 0.00 36.87 3.16
471 559 6.425114 GCTTTGTTGATCTAGTTGAGACTTGA 59.575 38.462 0.00 0.00 40.88 3.02
472 560 7.359933 GCTTTGTTGATCTAGTTGAGACTTGAG 60.360 40.741 0.00 0.00 40.17 3.02
473 561 6.901081 TGTTGATCTAGTTGAGACTTGAGA 57.099 37.500 0.00 0.00 40.17 3.27
474 562 6.918626 TGTTGATCTAGTTGAGACTTGAGAG 58.081 40.000 0.00 0.00 40.17 3.20
530 618 2.028112 ACTGCGTATGTGTCAGGATTGT 60.028 45.455 0.00 0.00 32.42 2.71
538 626 6.364435 CGTATGTGTCAGGATTGTGATGATAG 59.636 42.308 0.00 0.00 0.00 2.08
552 640 6.068010 TGTGATGATAGGGTTGAAACTTGTT 58.932 36.000 0.00 0.00 0.00 2.83
579 668 6.147581 GCGTCTGTGTTTATATATTCTCGGA 58.852 40.000 0.00 0.00 0.00 4.55
580 669 6.807230 GCGTCTGTGTTTATATATTCTCGGAT 59.193 38.462 0.00 0.00 0.00 4.18
610 702 3.910989 TGAATGATCGTTAGGGGAGAGA 58.089 45.455 0.00 0.00 0.00 3.10
611 703 4.483950 TGAATGATCGTTAGGGGAGAGAT 58.516 43.478 0.00 0.00 0.00 2.75
612 704 4.901849 TGAATGATCGTTAGGGGAGAGATT 59.098 41.667 0.00 0.00 0.00 2.40
613 705 4.881019 ATGATCGTTAGGGGAGAGATTG 57.119 45.455 0.00 0.00 0.00 2.67
615 707 1.120530 TCGTTAGGGGAGAGATTGCC 58.879 55.000 0.00 0.00 36.35 4.52
620 712 2.597903 GGGAGAGATTGCCCACCC 59.402 66.667 0.00 0.00 44.07 4.61
627 719 1.134946 GAGATTGCCCACCCGAATTTG 59.865 52.381 0.00 0.00 0.00 2.32
648 740 4.376146 TGATTTAAAAGTGCCAAAGCCAC 58.624 39.130 0.00 0.00 38.69 5.01
662 754 1.008079 GCCACAGTTTGACAGCAGC 60.008 57.895 0.00 0.00 0.00 5.25
832 928 3.058914 GTCTTTGTGGTTTGACAGGATCG 60.059 47.826 0.00 0.00 0.00 3.69
834 930 3.755112 TTGTGGTTTGACAGGATCGTA 57.245 42.857 0.00 0.00 0.00 3.43
903 999 4.673580 GCTGTTGATGCTCGATTTTCATGT 60.674 41.667 0.00 0.00 0.00 3.21
945 1045 3.533547 ACAAATCAGCAAAGCAAAGCAA 58.466 36.364 0.00 0.00 0.00 3.91
946 1046 3.940221 ACAAATCAGCAAAGCAAAGCAAA 59.060 34.783 0.00 0.00 0.00 3.68
947 1047 4.034742 ACAAATCAGCAAAGCAAAGCAAAG 59.965 37.500 0.00 0.00 0.00 2.77
948 1048 1.574134 TCAGCAAAGCAAAGCAAAGC 58.426 45.000 0.00 0.00 0.00 3.51
949 1049 1.134759 TCAGCAAAGCAAAGCAAAGCA 60.135 42.857 0.00 0.00 0.00 3.91
950 1050 1.260561 CAGCAAAGCAAAGCAAAGCAG 59.739 47.619 0.00 0.00 0.00 4.24
951 1051 0.041576 GCAAAGCAAAGCAAAGCAGC 60.042 50.000 0.00 0.00 0.00 5.25
954 1054 0.595825 AAGCAAAGCAAAGCAGCGAC 60.596 50.000 0.00 0.00 40.15 5.19
985 1089 2.477104 GGATCCATCCCAACCCAAAT 57.523 50.000 6.95 0.00 41.20 2.32
986 1090 2.319844 GGATCCATCCCAACCCAAATC 58.680 52.381 6.95 0.00 41.20 2.17
988 1092 0.682855 TCCATCCCAACCCAAATCGC 60.683 55.000 0.00 0.00 0.00 4.58
1258 1362 2.338620 CCGTGCTCTTCACCGTCA 59.661 61.111 0.00 0.00 42.69 4.35
1500 1916 2.511600 GCTGCCGCGGTGAAGTAT 60.512 61.111 28.70 0.00 0.00 2.12
1866 2282 0.901580 GTCTGTACAGGGGGTTCGGA 60.902 60.000 22.48 0.00 30.64 4.55
2084 2520 4.915085 TCGAACGAAATTTGCATTCCTTTC 59.085 37.500 0.00 0.00 0.00 2.62
2105 2541 8.177663 CCTTTCCTTTTCTTTCTTTCTTTTTGC 58.822 33.333 0.00 0.00 0.00 3.68
2113 2549 3.626028 TCTTTCTTTTTGCGAGAAGGC 57.374 42.857 4.48 0.00 34.84 4.35
2123 2559 0.178068 GCGAGAAGGCCAAGGTCATA 59.822 55.000 5.01 0.00 0.00 2.15
2136 2572 7.018550 AGGCCAAGGTCATATATCCAGAAATAA 59.981 37.037 5.01 0.00 0.00 1.40
2143 2579 9.261035 GGTCATATATCCAGAAATAAGAGAGGA 57.739 37.037 0.00 0.00 0.00 3.71
2173 2609 4.419586 AGGAGGCTCCTCAGCGATTAGA 62.420 54.545 30.46 0.00 45.66 2.10
2175 2611 3.193471 GCTCCTCAGCGATTAGAGC 57.807 57.895 1.15 1.15 42.74 4.09
2176 2612 0.673437 GCTCCTCAGCGATTAGAGCT 59.327 55.000 8.63 0.00 45.11 4.09
2198 2634 3.087176 GGCCGTCCGATCGTTTTC 58.913 61.111 15.09 0.49 0.00 2.29
2204 2640 2.671396 CCGTCCGATCGTTTTCTTGATT 59.329 45.455 15.09 0.00 0.00 2.57
2205 2641 3.483574 CCGTCCGATCGTTTTCTTGATTG 60.484 47.826 15.09 0.00 0.00 2.67
2206 2642 3.417185 GTCCGATCGTTTTCTTGATTGC 58.583 45.455 15.09 0.00 0.00 3.56
2207 2643 2.093625 TCCGATCGTTTTCTTGATTGCG 59.906 45.455 15.09 0.00 0.00 4.85
2237 2673 3.210528 GATCTCGGGCTCGGTCGT 61.211 66.667 5.94 0.00 36.95 4.34
2262 2698 0.668401 GCCGTCGGATATTTACCCGG 60.668 60.000 17.49 0.00 45.36 5.73
2265 2701 1.664016 CGTCGGATATTTACCCGGTCG 60.664 57.143 0.00 0.00 45.36 4.79
2287 2723 4.259690 CGTCTCCAACCGTTCGATATTTTC 60.260 45.833 0.00 0.00 0.00 2.29
2297 2733 5.230942 CGTTCGATATTTTCCCTATGAGCT 58.769 41.667 0.00 0.00 0.00 4.09
2300 2736 6.174720 TCGATATTTTCCCTATGAGCTGTT 57.825 37.500 0.00 0.00 0.00 3.16
2331 2767 1.767127 CGTGCCACCGCGCATAATTA 61.767 55.000 8.75 0.00 46.24 1.40
2333 2769 0.744771 TGCCACCGCGCATAATTACA 60.745 50.000 8.75 0.00 38.08 2.41
2334 2770 0.316689 GCCACCGCGCATAATTACAC 60.317 55.000 8.75 0.00 0.00 2.90
2360 2796 3.483954 CCGAGGGCATTCTTGTCAT 57.516 52.632 0.00 0.00 0.00 3.06
2361 2797 1.755179 CCGAGGGCATTCTTGTCATT 58.245 50.000 0.00 0.00 0.00 2.57
2362 2798 2.094675 CCGAGGGCATTCTTGTCATTT 58.905 47.619 0.00 0.00 0.00 2.32
2423 2859 1.226239 GCCGTAGAGACCGTCGTTC 60.226 63.158 0.00 0.00 0.00 3.95
2462 2898 2.770475 GCCTCCTTCTCCCCCTCC 60.770 72.222 0.00 0.00 0.00 4.30
2483 2919 2.123897 GCCCGCCTCTCTCTCTCT 60.124 66.667 0.00 0.00 0.00 3.10
2484 2920 2.193536 GCCCGCCTCTCTCTCTCTC 61.194 68.421 0.00 0.00 0.00 3.20
2930 3366 2.818714 TCGCGTCGTCTCCTCCTC 60.819 66.667 5.77 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.261619 CTTGCTCACTCCAAACGTGAC 59.738 52.381 0.00 0.00 36.54 3.67
1 2 1.134521 ACTTGCTCACTCCAAACGTGA 60.135 47.619 0.00 0.00 38.94 4.35
2 3 1.003545 CACTTGCTCACTCCAAACGTG 60.004 52.381 0.00 0.00 0.00 4.49
4 5 1.299541 ACACTTGCTCACTCCAAACG 58.700 50.000 0.00 0.00 0.00 3.60
5 6 3.467803 ACTACACTTGCTCACTCCAAAC 58.532 45.455 0.00 0.00 0.00 2.93
6 7 3.838244 ACTACACTTGCTCACTCCAAA 57.162 42.857 0.00 0.00 0.00 3.28
7 8 3.895656 ACTACTACACTTGCTCACTCCAA 59.104 43.478 0.00 0.00 0.00 3.53
18 19 4.760204 GCCAAATCACCAACTACTACACTT 59.240 41.667 0.00 0.00 0.00 3.16
212 216 0.118346 TACAGGCCAGGAAGAAGGGA 59.882 55.000 5.01 0.00 0.00 4.20
345 350 3.197790 CGCGGGCATTCACAGGAG 61.198 66.667 0.00 0.00 0.00 3.69
362 367 1.534595 GCATCCGATGAATCTGAAGGC 59.465 52.381 12.79 0.00 0.00 4.35
394 481 2.295349 AGGCACATTCAGCAAGAACTTG 59.705 45.455 9.82 9.82 39.49 3.16
420 507 4.202141 TGGATTTGTTTGTGCCTCAAGAAG 60.202 41.667 0.00 0.00 37.35 2.85
452 540 7.231519 TCAACTCTCAAGTCTCAACTAGATCAA 59.768 37.037 0.00 0.00 36.36 2.57
468 556 2.036475 GACAGCCTGTCTCAACTCTCAA 59.964 50.000 17.57 0.00 43.73 3.02
469 557 1.615883 GACAGCCTGTCTCAACTCTCA 59.384 52.381 17.57 0.00 43.73 3.27
470 558 2.362169 GACAGCCTGTCTCAACTCTC 57.638 55.000 17.57 0.00 43.73 3.20
530 618 5.476599 CCAACAAGTTTCAACCCTATCATCA 59.523 40.000 0.00 0.00 0.00 3.07
538 626 0.249280 CGCCCAACAAGTTTCAACCC 60.249 55.000 0.00 0.00 0.00 4.11
552 640 6.169557 AGAATATATAAACACAGACGCCCA 57.830 37.500 0.00 0.00 0.00 5.36
610 702 1.864669 ATCAAATTCGGGTGGGCAAT 58.135 45.000 0.00 0.00 0.00 3.56
611 703 1.638529 AATCAAATTCGGGTGGGCAA 58.361 45.000 0.00 0.00 0.00 4.52
612 704 1.638529 AAATCAAATTCGGGTGGGCA 58.361 45.000 0.00 0.00 0.00 5.36
613 705 3.878160 TTAAATCAAATTCGGGTGGGC 57.122 42.857 0.00 0.00 0.00 5.36
615 707 5.120053 GCACTTTTAAATCAAATTCGGGTGG 59.880 40.000 0.00 0.00 0.00 4.61
617 709 5.221541 TGGCACTTTTAAATCAAATTCGGGT 60.222 36.000 0.00 0.00 0.00 5.28
618 710 5.233988 TGGCACTTTTAAATCAAATTCGGG 58.766 37.500 0.00 0.00 0.00 5.14
619 711 6.777526 TTGGCACTTTTAAATCAAATTCGG 57.222 33.333 0.00 0.00 0.00 4.30
620 712 6.791775 GCTTTGGCACTTTTAAATCAAATTCG 59.208 34.615 0.00 0.00 38.54 3.34
648 740 2.466846 CCAAAAGCTGCTGTCAAACTG 58.533 47.619 1.35 0.00 0.00 3.16
662 754 1.063942 GTATCCCCTGTCCCCCAAAAG 60.064 57.143 0.00 0.00 0.00 2.27
700 792 6.809869 ACAGTAAACTACTCCGTGTAAGTTT 58.190 36.000 4.87 4.87 36.76 2.66
701 793 6.396829 ACAGTAAACTACTCCGTGTAAGTT 57.603 37.500 0.00 0.00 36.76 2.66
721 817 1.261619 GAAACCACAGAAGCACGACAG 59.738 52.381 0.00 0.00 0.00 3.51
806 902 3.016736 CTGTCAAACCACAAAGACCAGT 58.983 45.455 0.00 0.00 0.00 4.00
855 951 3.428870 GTCAATGTTCGCATCCTATACGG 59.571 47.826 0.00 0.00 36.70 4.02
945 1045 1.145803 GGTTAGTTTCGTCGCTGCTT 58.854 50.000 0.00 0.00 0.00 3.91
946 1046 1.007336 CGGTTAGTTTCGTCGCTGCT 61.007 55.000 0.00 0.00 0.00 4.24
947 1047 1.414897 CGGTTAGTTTCGTCGCTGC 59.585 57.895 0.00 0.00 0.00 5.25
948 1048 1.349259 CCCGGTTAGTTTCGTCGCTG 61.349 60.000 0.00 0.00 0.00 5.18
949 1049 1.080298 CCCGGTTAGTTTCGTCGCT 60.080 57.895 0.00 0.00 0.00 4.93
950 1050 0.459063 ATCCCGGTTAGTTTCGTCGC 60.459 55.000 0.00 0.00 0.00 5.19
951 1051 1.553308 GATCCCGGTTAGTTTCGTCG 58.447 55.000 0.00 0.00 0.00 5.12
954 1054 2.480845 GATGGATCCCGGTTAGTTTCG 58.519 52.381 9.90 0.00 0.00 3.46
988 1092 2.593978 CCCCATCTGCTCCCACAG 59.406 66.667 0.00 0.00 39.12 3.66
1194 1298 3.518068 GCGCCCATGCCCTTGTAC 61.518 66.667 0.00 0.00 0.00 2.90
1728 2144 2.045045 TCGGTCGGGTACACGGAT 60.045 61.111 19.08 0.00 0.00 4.18
1926 2342 2.060980 CGCCTAGAGCAGGGACCTT 61.061 63.158 0.00 0.00 45.66 3.50
2084 2520 6.751888 TCTCGCAAAAAGAAAGAAAGAAAAGG 59.248 34.615 0.00 0.00 0.00 3.11
2102 2538 1.302511 GACCTTGGCCTTCTCGCAA 60.303 57.895 3.32 0.00 0.00 4.85
2105 2541 2.918712 ATATGACCTTGGCCTTCTCG 57.081 50.000 3.32 0.00 0.00 4.04
2113 2549 9.664332 CTCTTATTTCTGGATATATGACCTTGG 57.336 37.037 0.00 0.00 0.00 3.61
2123 2559 7.309091 TCCACTCCTCTCTTATTTCTGGATAT 58.691 38.462 0.00 0.00 0.00 1.63
2136 2572 0.337773 TCCTGCATCCACTCCTCTCT 59.662 55.000 0.00 0.00 0.00 3.10
2143 2579 2.373707 GGAGCCTCCTGCATCCACT 61.374 63.158 2.64 0.00 44.83 4.00
2144 2580 2.191641 GGAGCCTCCTGCATCCAC 59.808 66.667 2.64 0.00 44.83 4.02
2197 2633 1.298157 CGGCCAGAACGCAATCAAGA 61.298 55.000 2.24 0.00 0.00 3.02
2198 2634 1.135315 CGGCCAGAACGCAATCAAG 59.865 57.895 2.24 0.00 0.00 3.02
2204 2640 3.545124 ATCCAACGGCCAGAACGCA 62.545 57.895 2.24 0.00 34.00 5.24
2205 2641 2.746277 ATCCAACGGCCAGAACGC 60.746 61.111 2.24 0.00 34.00 4.84
2206 2642 1.079127 AGATCCAACGGCCAGAACG 60.079 57.895 2.24 0.00 37.36 3.95
2207 2643 1.084370 CGAGATCCAACGGCCAGAAC 61.084 60.000 2.24 0.00 0.00 3.01
2237 2673 0.253610 AAATATCCGACGGCCCACAA 59.746 50.000 9.66 0.00 0.00 3.33
2262 2698 0.109412 ATCGAACGGTTGGAGACGAC 60.109 55.000 11.20 0.00 44.59 4.34
2265 2701 4.033702 GGAAAATATCGAACGGTTGGAGAC 59.966 45.833 11.20 0.00 0.00 3.36
2277 2713 5.808366 ACAGCTCATAGGGAAAATATCGA 57.192 39.130 0.00 0.00 0.00 3.59
2287 2723 3.386543 CGGGAAACAGCTCATAGGG 57.613 57.895 0.00 0.00 0.00 3.53
2324 2760 0.951558 GGCGGGGCAGTGTAATTATG 59.048 55.000 0.00 0.00 0.00 1.90
2325 2761 0.534203 CGGCGGGGCAGTGTAATTAT 60.534 55.000 0.00 0.00 0.00 1.28
2358 2794 3.321682 TCTTTTCCCAGCCAAGTGAAATG 59.678 43.478 0.00 0.00 0.00 2.32
2359 2795 3.575805 TCTTTTCCCAGCCAAGTGAAAT 58.424 40.909 0.00 0.00 0.00 2.17
2360 2796 3.025322 TCTTTTCCCAGCCAAGTGAAA 57.975 42.857 0.00 0.00 0.00 2.69
2361 2797 2.746279 TCTTTTCCCAGCCAAGTGAA 57.254 45.000 0.00 0.00 0.00 3.18
2362 2798 2.555227 GGATCTTTTCCCAGCCAAGTGA 60.555 50.000 0.00 0.00 38.75 3.41
2813 3249 2.371259 GGAAGAGGAGAGGGGTGGC 61.371 68.421 0.00 0.00 0.00 5.01
2911 3347 4.517703 GGAGGAGACGACGCGACG 62.518 72.222 27.89 27.89 39.31 5.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.