Multiple sequence alignment - TraesCS1B01G206100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G206100 chr1B 100.000 4864 0 0 1 4864 372223857 372218994 0.000000e+00 8983.0
1 TraesCS1B01G206100 chr1B 97.835 231 2 2 4213 4441 372219536 372219307 3.530000e-106 396.0
2 TraesCS1B01G206100 chr1B 97.835 231 2 2 4322 4551 372219645 372219417 3.530000e-106 396.0
3 TraesCS1B01G206100 chr1B 97.500 120 0 2 4213 4330 372219425 372219307 8.260000e-48 202.0
4 TraesCS1B01G206100 chr1B 97.500 120 0 2 4433 4551 372219645 372219528 8.260000e-48 202.0
5 TraesCS1B01G206100 chr1D 94.605 4059 105 36 325 4324 272758262 272754259 0.000000e+00 6178.0
6 TraesCS1B01G206100 chr1D 95.238 210 6 2 1 209 272758776 272758570 3.630000e-86 329.0
7 TraesCS1B01G206100 chr1D 97.884 189 4 0 4676 4864 272754179 272753991 1.310000e-85 327.0
8 TraesCS1B01G206100 chr1D 89.071 183 10 4 4433 4614 272754364 272754191 8.200000e-53 219.0
9 TraesCS1B01G206100 chr1D 97.872 47 1 0 4648 4694 272754180 272754226 1.120000e-11 82.4
10 TraesCS1B01G206100 chr1A 93.088 3313 102 42 1 3226 345172215 345168943 0.000000e+00 4732.0
11 TraesCS1B01G206100 chr1A 95.660 1106 33 10 3224 4324 345168820 345167725 0.000000e+00 1762.0
12 TraesCS1B01G206100 chr1A 96.237 186 7 0 4679 4864 345167642 345167457 6.120000e-79 305.0
13 TraesCS1B01G206100 chr1A 89.071 183 13 3 4433 4614 345167833 345167657 2.280000e-53 220.0
14 TraesCS1B01G206100 chr1A 97.872 47 1 0 4648 4694 345167646 345167692 1.120000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G206100 chr1B 372218994 372223857 4863 True 8983.00 8983 100.0000 1 4864 1 chr1B.!!$R1 4863
1 TraesCS1B01G206100 chr1D 272753991 272758776 4785 True 1763.25 6178 94.1995 1 4864 4 chr1D.!!$R1 4863
2 TraesCS1B01G206100 chr1A 345167457 345172215 4758 True 1754.75 4732 93.5140 1 4864 4 chr1A.!!$R1 4863

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
569 782 0.892063 GTTCGAGCAAGAGAGGAGGT 59.108 55.000 0.0 0.0 0.0 3.85 F
1193 1455 0.322726 CATCAGCACCACCACCATCA 60.323 55.000 0.0 0.0 0.0 3.07 F
1194 1456 0.322816 ATCAGCACCACCACCATCAC 60.323 55.000 0.0 0.0 0.0 3.06 F
1723 1994 1.003545 CATAATCACCGCCGCTTCTTG 60.004 52.381 0.0 0.0 0.0 3.02 F
3000 3296 0.038526 CTGGTGGACTGGTGACGTAC 60.039 60.000 0.0 0.0 0.0 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2563 2859 0.178301 TGCACGTAAACCACACCAGA 59.822 50.000 0.0 0.0 0.0 3.86 R
2564 2860 1.234821 ATGCACGTAAACCACACCAG 58.765 50.000 0.0 0.0 0.0 4.00 R
2565 2861 2.037381 TCTATGCACGTAAACCACACCA 59.963 45.455 0.0 0.0 0.0 4.17 R
3530 3953 2.159226 ACTAGCTACGACAACCTGATGC 60.159 50.000 0.0 0.0 0.0 3.91 R
4529 4954 0.035056 GCCACACAGCTCTACCCAAT 60.035 55.000 0.0 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 70 5.663556 TGGCCCCCTTTTCGAATATTAATTT 59.336 36.000 0.00 0.00 0.00 1.82
108 110 2.678836 CGAGTACTAGAGTGGACCAGTG 59.321 54.545 6.54 0.00 0.00 3.66
130 134 3.545703 CCACTTCTCCTCTCTCTCTCTC 58.454 54.545 0.00 0.00 0.00 3.20
187 191 4.438797 TCGAACGAGAAAGAAAACGTACTG 59.561 41.667 0.00 0.00 38.00 2.74
213 217 7.272244 CAACCCAAGGTGAGAAAAATAAAGTT 58.728 34.615 0.00 0.00 35.34 2.66
240 244 2.171840 TCGTTTGAAGAGAGAGAGGGG 58.828 52.381 0.00 0.00 0.00 4.79
543 756 2.203832 TGAGCTGAGGGAGTGGCA 60.204 61.111 0.00 0.00 0.00 4.92
569 782 0.892063 GTTCGAGCAAGAGAGGAGGT 59.108 55.000 0.00 0.00 0.00 3.85
571 784 0.967887 TCGAGCAAGAGAGGAGGTGG 60.968 60.000 0.00 0.00 0.00 4.61
572 785 0.967887 CGAGCAAGAGAGGAGGTGGA 60.968 60.000 0.00 0.00 0.00 4.02
573 786 1.494960 GAGCAAGAGAGGAGGTGGAT 58.505 55.000 0.00 0.00 0.00 3.41
610 831 1.738365 CGGCGATCTCATCCATCCATC 60.738 57.143 0.00 0.00 0.00 3.51
611 832 1.406614 GGCGATCTCATCCATCCATCC 60.407 57.143 0.00 0.00 0.00 3.51
612 833 1.277273 GCGATCTCATCCATCCATCCA 59.723 52.381 0.00 0.00 0.00 3.41
613 834 2.093075 GCGATCTCATCCATCCATCCAT 60.093 50.000 0.00 0.00 0.00 3.41
746 974 2.091278 TCGATCCCTCCCATGTTACTCT 60.091 50.000 0.00 0.00 0.00 3.24
802 1036 1.129437 GAGTTCGTTTGAGATGCAGCC 59.871 52.381 0.00 0.00 0.00 4.85
828 1062 3.265489 AGTGGAGTGGGGGAGAAATAAA 58.735 45.455 0.00 0.00 0.00 1.40
829 1063 3.267031 AGTGGAGTGGGGGAGAAATAAAG 59.733 47.826 0.00 0.00 0.00 1.85
830 1064 2.025321 TGGAGTGGGGGAGAAATAAAGC 60.025 50.000 0.00 0.00 0.00 3.51
1192 1454 1.033746 CCATCAGCACCACCACCATC 61.034 60.000 0.00 0.00 0.00 3.51
1193 1455 0.322726 CATCAGCACCACCACCATCA 60.323 55.000 0.00 0.00 0.00 3.07
1194 1456 0.322816 ATCAGCACCACCACCATCAC 60.323 55.000 0.00 0.00 0.00 3.06
1195 1457 1.973281 CAGCACCACCACCATCACC 60.973 63.158 0.00 0.00 0.00 4.02
1196 1458 2.115052 GCACCACCACCATCACCA 59.885 61.111 0.00 0.00 0.00 4.17
1197 1459 1.973281 GCACCACCACCATCACCAG 60.973 63.158 0.00 0.00 0.00 4.00
1206 1468 2.044555 CCATCACCAGCACCAGCAG 61.045 63.158 0.00 0.00 45.49 4.24
1723 1994 1.003545 CATAATCACCGCCGCTTCTTG 60.004 52.381 0.00 0.00 0.00 3.02
1828 2104 1.222115 GCCGGCGAGGTAGCAATAAG 61.222 60.000 12.58 0.00 43.70 1.73
1877 2154 2.941720 AGATCTCGCATTCTTTTCCTGC 59.058 45.455 0.00 0.00 0.00 4.85
1980 2257 2.158449 CGACTTGCAAGCCTTTGACTAG 59.842 50.000 26.27 0.84 36.36 2.57
1981 2258 1.882623 ACTTGCAAGCCTTTGACTAGC 59.117 47.619 26.27 0.00 36.36 3.42
1982 2259 2.157738 CTTGCAAGCCTTTGACTAGCT 58.842 47.619 14.65 0.00 38.88 3.32
2010 2287 1.304962 TAGTTGGAGCTCCTCGCCA 60.305 57.895 32.28 10.87 43.18 5.69
2283 2560 7.396907 TGATGGTATTGTTGGATCAAATTCACT 59.603 33.333 0.00 0.00 0.00 3.41
2352 2645 5.047306 AGTTTCTTTATGCAGTAAAAGGGGC 60.047 40.000 15.17 8.28 34.22 5.80
2369 2662 3.138468 AGGGGCTGTAACTTTTCTTGACT 59.862 43.478 0.00 0.00 0.00 3.41
2390 2683 3.407698 TGAGTTAATTGCGCCTGAAGAA 58.592 40.909 4.18 0.00 0.00 2.52
2400 2693 4.009675 TGCGCCTGAAGAAATAATGTCTT 58.990 39.130 4.18 0.00 38.05 3.01
2404 2697 6.195165 CGCCTGAAGAAATAATGTCTTAAGC 58.805 40.000 0.00 0.00 35.46 3.09
2562 2858 7.648039 GAGATCCTCGTCCTAATTATGGTAT 57.352 40.000 0.00 0.00 0.00 2.73
2563 2859 8.068892 GAGATCCTCGTCCTAATTATGGTATT 57.931 38.462 0.00 0.00 0.00 1.89
2564 2860 8.068892 AGATCCTCGTCCTAATTATGGTATTC 57.931 38.462 0.00 0.00 0.00 1.75
2565 2861 7.896496 AGATCCTCGTCCTAATTATGGTATTCT 59.104 37.037 0.00 0.00 0.00 2.40
2566 2862 7.228314 TCCTCGTCCTAATTATGGTATTCTG 57.772 40.000 0.00 0.00 0.00 3.02
2567 2863 6.210784 TCCTCGTCCTAATTATGGTATTCTGG 59.789 42.308 0.00 0.00 0.00 3.86
2568 2864 6.014499 CCTCGTCCTAATTATGGTATTCTGGT 60.014 42.308 0.00 0.00 0.00 4.00
2658 2954 7.117523 TGTGAGTTGTTTGTGATTTTTCTTTGG 59.882 33.333 0.00 0.00 0.00 3.28
2678 2974 8.486210 TCTTTGGTAGCAACTCAATGATATAGT 58.514 33.333 6.90 0.00 0.00 2.12
2703 2999 9.463443 GTGAGCTTTAGATGTTTGTATTTGTTT 57.537 29.630 0.00 0.00 0.00 2.83
2736 3032 3.821033 GGAGTCACCTGCATACTTGTTTT 59.179 43.478 0.00 0.00 35.41 2.43
2763 3059 1.904144 CCATGCAATTTCTGTCTGCG 58.096 50.000 0.00 0.00 38.97 5.18
2807 3103 0.896923 CTTAAATTGCCTGCAGCCCA 59.103 50.000 8.66 4.55 42.71 5.36
2812 3108 3.736996 TTGCCTGCAGCCCACTTGT 62.737 57.895 8.66 0.00 42.71 3.16
2821 3117 3.133721 TGCAGCCCACTTGTTTATGTTTT 59.866 39.130 0.00 0.00 0.00 2.43
2997 3293 0.390340 CATCTGGTGGACTGGTGACG 60.390 60.000 0.00 0.00 31.33 4.35
3000 3296 0.038526 CTGGTGGACTGGTGACGTAC 60.039 60.000 0.00 0.00 0.00 3.67
3007 3303 2.012673 GACTGGTGACGTACGAGGTAT 58.987 52.381 24.41 0.00 39.22 2.73
3060 3356 9.208022 GATACTAATGCTTGCACATTCTACATA 57.792 33.333 5.86 0.00 40.64 2.29
3064 3360 9.212641 CTAATGCTTGCACATTCTACATATACT 57.787 33.333 5.86 0.00 40.64 2.12
3107 3403 8.500837 TTGTGTTCTTTGCTGTAATTTATTCG 57.499 30.769 0.00 0.00 0.00 3.34
3139 3435 8.763049 TCAGAAGTATACACATCAAACAGAAG 57.237 34.615 5.50 0.00 0.00 2.85
3153 3449 5.066375 TCAAACAGAAGTCCATGTGTTTCAG 59.934 40.000 6.83 0.73 42.73 3.02
3168 3464 8.873830 CATGTGTTTCAGTAGGAGTACTATTTG 58.126 37.037 0.00 0.00 37.40 2.32
3177 3473 9.562408 CAGTAGGAGTACTATTTGAGTCTGATA 57.438 37.037 0.00 0.00 37.40 2.15
3213 3509 4.487948 GCTTTCTGCTTATGATTGCACAA 58.512 39.130 0.00 0.00 38.95 3.33
3217 3513 5.300969 TCTGCTTATGATTGCACAACTTC 57.699 39.130 0.00 0.00 35.20 3.01
3256 3678 1.283029 AGAGCTTTCTGCCTATGCCAA 59.717 47.619 0.00 0.00 44.23 4.52
3374 3796 0.326264 GCAGGACTGGTGGATTGAGT 59.674 55.000 1.01 0.00 0.00 3.41
3460 3882 2.035449 CGACACCTGTTCAGGTTCTGTA 59.965 50.000 20.24 0.00 40.85 2.74
3482 3904 2.978156 TTTGGGAATTGTCTCTGCCT 57.022 45.000 0.00 0.00 0.00 4.75
3484 3906 2.978156 TGGGAATTGTCTCTGCCTTT 57.022 45.000 0.00 0.00 0.00 3.11
3490 3912 0.603707 TTGTCTCTGCCTTTGCTCCG 60.604 55.000 0.00 0.00 38.71 4.63
3498 3920 1.202359 TGCCTTTGCTCCGTTTTGTTC 60.202 47.619 0.00 0.00 38.71 3.18
3522 3945 6.433716 TCAATATGTCAAAATGCTGACTTGGA 59.566 34.615 5.54 0.00 45.03 3.53
3530 3953 4.796038 AATGCTGACTTGGAATCTTTGG 57.204 40.909 0.00 0.00 0.00 3.28
3545 3968 2.037902 TCTTTGGCATCAGGTTGTCGTA 59.962 45.455 0.00 0.00 0.00 3.43
3689 4112 1.164662 GCACATCCAGCGCATCATCT 61.165 55.000 11.47 0.00 0.00 2.90
3782 4205 2.192979 CACATGCCCCCTGCGTAT 59.807 61.111 0.00 0.00 45.60 3.06
3978 4401 0.824182 CCGACCTGGTAGCTAGGAGG 60.824 65.000 14.16 14.16 38.71 4.30
4009 4432 0.450983 GCTCTCTGGCATGCTGTTTC 59.549 55.000 18.92 0.10 0.00 2.78
4169 4592 6.598503 TGTGGATCATGAATTCTAGAATGCT 58.401 36.000 21.74 7.14 0.00 3.79
4210 4633 2.637872 ACTCTAGCTTGTTTACCTGCCA 59.362 45.455 0.00 0.00 0.00 4.92
4217 4640 0.595588 TGTTTACCTGCCATTGTGCG 59.404 50.000 0.00 0.00 0.00 5.34
4226 4649 2.202440 CATTGTGCGCTGCTGCTC 60.202 61.111 9.73 6.30 36.97 4.26
4236 4659 2.280797 TGCTGCTCGGGTGTGTTC 60.281 61.111 0.00 0.00 0.00 3.18
4237 4660 3.414700 GCTGCTCGGGTGTGTTCG 61.415 66.667 0.00 0.00 0.00 3.95
4258 4683 3.066064 CGGTCTTCTACTGAGATGTCTGG 59.934 52.174 1.84 0.00 36.47 3.86
4259 4684 4.020543 GGTCTTCTACTGAGATGTCTGGT 58.979 47.826 1.84 0.00 0.00 4.00
4260 4685 4.142271 GGTCTTCTACTGAGATGTCTGGTG 60.142 50.000 1.84 0.00 0.00 4.17
4261 4686 4.702612 GTCTTCTACTGAGATGTCTGGTGA 59.297 45.833 1.84 0.00 0.00 4.02
4262 4687 5.184096 GTCTTCTACTGAGATGTCTGGTGAA 59.816 44.000 1.84 4.68 0.00 3.18
4263 4688 5.954752 TCTTCTACTGAGATGTCTGGTGAAT 59.045 40.000 1.84 0.00 0.00 2.57
4264 4689 5.588958 TCTACTGAGATGTCTGGTGAATG 57.411 43.478 1.84 0.00 0.00 2.67
4288 4713 3.181464 TGTGTTTTCAGACGTGGTATGGA 60.181 43.478 0.00 0.00 0.00 3.41
4289 4714 3.810941 GTGTTTTCAGACGTGGTATGGAA 59.189 43.478 0.00 0.00 0.00 3.53
4290 4715 4.454504 GTGTTTTCAGACGTGGTATGGAAT 59.545 41.667 0.00 0.00 0.00 3.01
4291 4716 4.454161 TGTTTTCAGACGTGGTATGGAATG 59.546 41.667 0.00 0.00 0.00 2.67
4292 4717 2.979814 TCAGACGTGGTATGGAATGG 57.020 50.000 0.00 0.00 0.00 3.16
4293 4718 1.484653 TCAGACGTGGTATGGAATGGG 59.515 52.381 0.00 0.00 0.00 4.00
4294 4719 1.484653 CAGACGTGGTATGGAATGGGA 59.515 52.381 0.00 0.00 0.00 4.37
4295 4720 2.104792 CAGACGTGGTATGGAATGGGAT 59.895 50.000 0.00 0.00 0.00 3.85
4296 4721 2.104792 AGACGTGGTATGGAATGGGATG 59.895 50.000 0.00 0.00 0.00 3.51
4297 4722 1.142870 ACGTGGTATGGAATGGGATGG 59.857 52.381 0.00 0.00 0.00 3.51
4298 4723 1.419762 CGTGGTATGGAATGGGATGGA 59.580 52.381 0.00 0.00 0.00 3.41
4299 4724 2.550855 CGTGGTATGGAATGGGATGGAG 60.551 54.545 0.00 0.00 0.00 3.86
4300 4725 1.425066 TGGTATGGAATGGGATGGAGC 59.575 52.381 0.00 0.00 0.00 4.70
4301 4726 1.425066 GGTATGGAATGGGATGGAGCA 59.575 52.381 0.00 0.00 0.00 4.26
4302 4727 2.553904 GGTATGGAATGGGATGGAGCAG 60.554 54.545 0.00 0.00 0.00 4.24
4303 4728 1.229131 ATGGAATGGGATGGAGCAGT 58.771 50.000 0.00 0.00 0.00 4.40
4304 4729 1.891933 TGGAATGGGATGGAGCAGTA 58.108 50.000 0.00 0.00 0.00 2.74
4305 4730 1.490490 TGGAATGGGATGGAGCAGTAC 59.510 52.381 0.00 0.00 0.00 2.73
4306 4731 1.771255 GGAATGGGATGGAGCAGTACT 59.229 52.381 0.00 0.00 0.00 2.73
4307 4732 2.972713 GGAATGGGATGGAGCAGTACTA 59.027 50.000 0.00 0.00 0.00 1.82
4308 4733 3.584848 GGAATGGGATGGAGCAGTACTAT 59.415 47.826 0.00 0.00 0.00 2.12
4309 4734 4.042187 GGAATGGGATGGAGCAGTACTATT 59.958 45.833 0.00 0.00 0.00 1.73
4310 4735 4.630644 ATGGGATGGAGCAGTACTATTG 57.369 45.455 0.00 0.00 0.00 1.90
4311 4736 2.705658 TGGGATGGAGCAGTACTATTGG 59.294 50.000 0.00 0.00 0.00 3.16
4312 4737 2.039084 GGGATGGAGCAGTACTATTGGG 59.961 54.545 0.00 0.00 0.00 4.12
4313 4738 2.706190 GGATGGAGCAGTACTATTGGGT 59.294 50.000 0.00 0.00 0.00 4.51
4314 4739 3.901844 GGATGGAGCAGTACTATTGGGTA 59.098 47.826 0.00 0.00 0.00 3.69
4315 4740 4.021016 GGATGGAGCAGTACTATTGGGTAG 60.021 50.000 0.00 0.00 36.44 3.18
4316 4741 4.259933 TGGAGCAGTACTATTGGGTAGA 57.740 45.455 0.00 0.00 34.38 2.59
4317 4742 4.215908 TGGAGCAGTACTATTGGGTAGAG 58.784 47.826 0.00 0.00 34.38 2.43
4318 4743 3.006003 GGAGCAGTACTATTGGGTAGAGC 59.994 52.174 0.00 0.00 34.38 4.09
4319 4744 3.892588 GAGCAGTACTATTGGGTAGAGCT 59.107 47.826 0.00 0.00 36.43 4.09
4320 4745 3.639094 AGCAGTACTATTGGGTAGAGCTG 59.361 47.826 0.00 0.00 38.01 4.24
4321 4746 3.385111 GCAGTACTATTGGGTAGAGCTGT 59.615 47.826 0.00 0.00 37.66 4.40
4322 4747 4.737946 GCAGTACTATTGGGTAGAGCTGTG 60.738 50.000 0.00 0.00 37.66 3.66
4323 4748 4.402793 CAGTACTATTGGGTAGAGCTGTGT 59.597 45.833 0.00 0.00 34.38 3.72
4324 4749 3.895232 ACTATTGGGTAGAGCTGTGTG 57.105 47.619 0.00 0.00 34.38 3.82
4325 4750 2.093447 ACTATTGGGTAGAGCTGTGTGC 60.093 50.000 0.00 0.00 36.52 4.57
4326 4751 5.539816 ACTATTGGGTAGAGCTGTGTGCG 62.540 52.174 0.00 0.00 39.14 5.34
4335 4760 4.086178 CTGTGTGCGCTGCTGCTC 62.086 66.667 9.73 6.30 36.97 4.26
4343 4768 4.996434 GCTGCTGCTCGGGTGTGT 62.996 66.667 8.53 0.00 36.03 3.72
4344 4769 2.281070 CTGCTGCTCGGGTGTGTT 60.281 61.111 0.00 0.00 0.00 3.32
4345 4770 2.591429 TGCTGCTCGGGTGTGTTG 60.591 61.111 0.00 0.00 0.00 3.33
4346 4771 2.591715 GCTGCTCGGGTGTGTTGT 60.592 61.111 0.00 0.00 0.00 3.32
4347 4772 2.607892 GCTGCTCGGGTGTGTTGTC 61.608 63.158 0.00 0.00 0.00 3.18
4348 4773 2.279851 TGCTCGGGTGTGTTGTCG 60.280 61.111 0.00 0.00 0.00 4.35
4349 4774 3.041940 GCTCGGGTGTGTTGTCGG 61.042 66.667 0.00 0.00 0.00 4.79
4350 4775 2.420043 CTCGGGTGTGTTGTCGGT 59.580 61.111 0.00 0.00 0.00 4.69
4351 4776 1.663702 CTCGGGTGTGTTGTCGGTC 60.664 63.158 0.00 0.00 0.00 4.79
4352 4777 2.083835 CTCGGGTGTGTTGTCGGTCT 62.084 60.000 0.00 0.00 0.00 3.85
4353 4778 1.227438 CGGGTGTGTTGTCGGTCTT 60.227 57.895 0.00 0.00 0.00 3.01
4354 4779 1.219522 CGGGTGTGTTGTCGGTCTTC 61.220 60.000 0.00 0.00 0.00 2.87
4355 4780 0.106149 GGGTGTGTTGTCGGTCTTCT 59.894 55.000 0.00 0.00 0.00 2.85
4356 4781 1.342174 GGGTGTGTTGTCGGTCTTCTA 59.658 52.381 0.00 0.00 0.00 2.10
4357 4782 2.401351 GGTGTGTTGTCGGTCTTCTAC 58.599 52.381 0.00 0.00 0.00 2.59
4358 4783 2.035576 GGTGTGTTGTCGGTCTTCTACT 59.964 50.000 0.00 0.00 0.00 2.57
4359 4784 3.254166 GGTGTGTTGTCGGTCTTCTACTA 59.746 47.826 0.00 0.00 0.00 1.82
4360 4785 4.261741 GGTGTGTTGTCGGTCTTCTACTAA 60.262 45.833 0.00 0.00 0.00 2.24
4361 4786 4.916249 GTGTGTTGTCGGTCTTCTACTAAG 59.084 45.833 0.00 0.00 0.00 2.18
4362 4787 4.823442 TGTGTTGTCGGTCTTCTACTAAGA 59.177 41.667 0.00 0.00 0.00 2.10
4363 4788 5.475909 TGTGTTGTCGGTCTTCTACTAAGAT 59.524 40.000 0.00 0.00 0.00 2.40
4364 4789 5.800941 GTGTTGTCGGTCTTCTACTAAGATG 59.199 44.000 0.00 0.00 0.00 2.90
4365 4790 5.475909 TGTTGTCGGTCTTCTACTAAGATGT 59.524 40.000 0.00 0.00 0.00 3.06
4366 4791 5.814764 TGTCGGTCTTCTACTAAGATGTC 57.185 43.478 0.00 0.00 0.00 3.06
4367 4792 5.498393 TGTCGGTCTTCTACTAAGATGTCT 58.502 41.667 0.00 0.00 0.00 3.41
4368 4793 5.354513 TGTCGGTCTTCTACTAAGATGTCTG 59.645 44.000 0.00 0.00 0.00 3.51
4369 4794 4.882427 TCGGTCTTCTACTAAGATGTCTGG 59.118 45.833 0.00 0.00 0.00 3.86
4370 4795 4.641094 CGGTCTTCTACTAAGATGTCTGGT 59.359 45.833 0.00 0.00 0.00 4.00
4371 4796 5.449314 CGGTCTTCTACTAAGATGTCTGGTG 60.449 48.000 0.00 0.00 0.00 4.17
4372 4797 5.652891 GGTCTTCTACTAAGATGTCTGGTGA 59.347 44.000 0.00 0.00 0.00 4.02
4373 4798 6.153000 GGTCTTCTACTAAGATGTCTGGTGAA 59.847 42.308 0.00 0.00 0.00 3.18
4374 4799 7.147811 GGTCTTCTACTAAGATGTCTGGTGAAT 60.148 40.741 0.00 0.00 0.00 2.57
4375 4800 7.704472 GTCTTCTACTAAGATGTCTGGTGAATG 59.296 40.741 0.00 0.00 0.00 2.67
4376 4801 7.397476 TCTTCTACTAAGATGTCTGGTGAATGT 59.603 37.037 0.00 0.00 0.00 2.71
4377 4802 7.482169 TCTACTAAGATGTCTGGTGAATGTT 57.518 36.000 0.00 0.00 0.00 2.71
4378 4803 7.323420 TCTACTAAGATGTCTGGTGAATGTTG 58.677 38.462 0.00 0.00 0.00 3.33
4379 4804 5.869579 ACTAAGATGTCTGGTGAATGTTGT 58.130 37.500 0.00 0.00 0.00 3.32
4380 4805 5.702670 ACTAAGATGTCTGGTGAATGTTGTG 59.297 40.000 0.00 0.00 0.00 3.33
4381 4806 4.090761 AGATGTCTGGTGAATGTTGTGT 57.909 40.909 0.00 0.00 0.00 3.72
4382 4807 4.464008 AGATGTCTGGTGAATGTTGTGTT 58.536 39.130 0.00 0.00 0.00 3.32
4383 4808 4.889409 AGATGTCTGGTGAATGTTGTGTTT 59.111 37.500 0.00 0.00 0.00 2.83
4384 4809 5.360714 AGATGTCTGGTGAATGTTGTGTTTT 59.639 36.000 0.00 0.00 0.00 2.43
4385 4810 4.992688 TGTCTGGTGAATGTTGTGTTTTC 58.007 39.130 0.00 0.00 0.00 2.29
4386 4811 4.460731 TGTCTGGTGAATGTTGTGTTTTCA 59.539 37.500 0.00 0.00 0.00 2.69
4387 4812 5.036737 GTCTGGTGAATGTTGTGTTTTCAG 58.963 41.667 0.00 0.00 30.50 3.02
4388 4813 4.946772 TCTGGTGAATGTTGTGTTTTCAGA 59.053 37.500 0.00 0.00 30.50 3.27
4389 4814 4.992688 TGGTGAATGTTGTGTTTTCAGAC 58.007 39.130 0.00 0.00 30.50 3.51
4390 4815 4.035017 GGTGAATGTTGTGTTTTCAGACG 58.965 43.478 0.00 0.00 30.50 4.18
4391 4816 4.438200 GGTGAATGTTGTGTTTTCAGACGT 60.438 41.667 0.00 0.00 30.50 4.34
4392 4817 4.495472 GTGAATGTTGTGTTTTCAGACGTG 59.505 41.667 0.00 0.00 30.50 4.49
4393 4818 3.691049 ATGTTGTGTTTTCAGACGTGG 57.309 42.857 0.00 0.00 0.00 4.94
4394 4819 2.428491 TGTTGTGTTTTCAGACGTGGT 58.572 42.857 0.00 0.00 0.00 4.16
4395 4820 3.597255 TGTTGTGTTTTCAGACGTGGTA 58.403 40.909 0.00 0.00 0.00 3.25
4396 4821 4.193090 TGTTGTGTTTTCAGACGTGGTAT 58.807 39.130 0.00 0.00 0.00 2.73
4397 4822 4.034626 TGTTGTGTTTTCAGACGTGGTATG 59.965 41.667 0.00 0.00 0.00 2.39
4416 4841 1.490490 TGGAATGGGATGGAGCAGTAC 59.510 52.381 0.00 0.00 0.00 2.73
4425 4850 3.901844 GGATGGAGCAGTACTATTGGGTA 59.098 47.826 0.00 0.00 0.00 3.69
4432 4857 3.385111 GCAGTACTATTGGGTAGAGCTGT 59.615 47.826 0.00 0.00 37.66 4.40
4435 4860 3.895232 ACTATTGGGTAGAGCTGTGTG 57.105 47.619 0.00 0.00 34.38 3.82
4436 4861 2.093447 ACTATTGGGTAGAGCTGTGTGC 60.093 50.000 0.00 0.00 36.52 4.57
4437 4862 5.539816 ACTATTGGGTAGAGCTGTGTGCG 62.540 52.174 0.00 0.00 39.14 5.34
4446 4871 4.086178 CTGTGTGCGCTGCTGCTC 62.086 66.667 9.73 6.30 36.97 4.26
4454 4879 4.996434 GCTGCTGCTCGGGTGTGT 62.996 66.667 8.53 0.00 36.03 3.72
4455 4880 2.281070 CTGCTGCTCGGGTGTGTT 60.281 61.111 0.00 0.00 0.00 3.32
4456 4881 2.591429 TGCTGCTCGGGTGTGTTG 60.591 61.111 0.00 0.00 0.00 3.33
4457 4882 2.591715 GCTGCTCGGGTGTGTTGT 60.592 61.111 0.00 0.00 0.00 3.32
4458 4883 2.607892 GCTGCTCGGGTGTGTTGTC 61.608 63.158 0.00 0.00 0.00 3.18
4459 4884 2.279851 TGCTCGGGTGTGTTGTCG 60.280 61.111 0.00 0.00 0.00 4.35
4460 4885 3.041940 GCTCGGGTGTGTTGTCGG 61.042 66.667 0.00 0.00 0.00 4.79
4461 4886 2.420043 CTCGGGTGTGTTGTCGGT 59.580 61.111 0.00 0.00 0.00 4.69
4462 4887 1.663702 CTCGGGTGTGTTGTCGGTC 60.664 63.158 0.00 0.00 0.00 4.79
4463 4888 2.083835 CTCGGGTGTGTTGTCGGTCT 62.084 60.000 0.00 0.00 0.00 3.85
4464 4889 1.227438 CGGGTGTGTTGTCGGTCTT 60.227 57.895 0.00 0.00 0.00 3.01
4465 4890 1.219522 CGGGTGTGTTGTCGGTCTTC 61.220 60.000 0.00 0.00 0.00 2.87
4466 4891 0.106149 GGGTGTGTTGTCGGTCTTCT 59.894 55.000 0.00 0.00 0.00 2.85
4467 4892 1.342174 GGGTGTGTTGTCGGTCTTCTA 59.658 52.381 0.00 0.00 0.00 2.10
4468 4893 2.401351 GGTGTGTTGTCGGTCTTCTAC 58.599 52.381 0.00 0.00 0.00 2.59
4469 4894 2.035576 GGTGTGTTGTCGGTCTTCTACT 59.964 50.000 0.00 0.00 0.00 2.57
4470 4895 3.050619 GTGTGTTGTCGGTCTTCTACTG 58.949 50.000 0.00 0.00 35.61 2.74
4471 4896 2.953648 TGTGTTGTCGGTCTTCTACTGA 59.046 45.455 0.00 0.00 41.37 3.41
4472 4897 3.004419 TGTGTTGTCGGTCTTCTACTGAG 59.996 47.826 0.00 0.00 44.30 3.35
4473 4898 3.252701 GTGTTGTCGGTCTTCTACTGAGA 59.747 47.826 0.00 0.00 44.30 3.27
4474 4899 4.079970 TGTTGTCGGTCTTCTACTGAGAT 58.920 43.478 0.00 0.00 44.30 2.75
4475 4900 4.082733 TGTTGTCGGTCTTCTACTGAGATG 60.083 45.833 0.00 0.00 44.30 2.90
4476 4901 3.687125 TGTCGGTCTTCTACTGAGATGT 58.313 45.455 0.00 0.00 44.30 3.06
4477 4902 3.690139 TGTCGGTCTTCTACTGAGATGTC 59.310 47.826 0.00 0.00 44.30 3.06
4478 4903 3.942748 GTCGGTCTTCTACTGAGATGTCT 59.057 47.826 0.00 0.00 44.30 3.41
4479 4904 3.942115 TCGGTCTTCTACTGAGATGTCTG 59.058 47.826 0.00 0.00 38.63 3.51
4480 4905 3.066064 CGGTCTTCTACTGAGATGTCTGG 59.934 52.174 1.84 0.00 36.47 3.86
4481 4906 4.020543 GGTCTTCTACTGAGATGTCTGGT 58.979 47.826 1.84 0.00 0.00 4.00
4482 4907 4.142271 GGTCTTCTACTGAGATGTCTGGTG 60.142 50.000 1.84 0.00 0.00 4.17
4483 4908 4.702612 GTCTTCTACTGAGATGTCTGGTGA 59.297 45.833 1.84 0.00 0.00 4.02
4484 4909 5.184096 GTCTTCTACTGAGATGTCTGGTGAA 59.816 44.000 1.84 4.68 0.00 3.18
4485 4910 5.954752 TCTTCTACTGAGATGTCTGGTGAAT 59.045 40.000 1.84 0.00 0.00 2.57
4486 4911 5.588958 TCTACTGAGATGTCTGGTGAATG 57.411 43.478 1.84 0.00 0.00 2.67
4487 4912 5.019470 TCTACTGAGATGTCTGGTGAATGT 58.981 41.667 1.84 0.00 0.00 2.71
4488 4913 4.630644 ACTGAGATGTCTGGTGAATGTT 57.369 40.909 1.84 0.00 0.00 2.71
4489 4914 4.321718 ACTGAGATGTCTGGTGAATGTTG 58.678 43.478 1.84 0.00 0.00 3.33
4490 4915 4.202398 ACTGAGATGTCTGGTGAATGTTGT 60.202 41.667 1.84 0.00 0.00 3.32
4491 4916 4.067192 TGAGATGTCTGGTGAATGTTGTG 58.933 43.478 0.00 0.00 0.00 3.33
4492 4917 4.067896 GAGATGTCTGGTGAATGTTGTGT 58.932 43.478 0.00 0.00 0.00 3.72
4493 4918 4.464008 AGATGTCTGGTGAATGTTGTGTT 58.536 39.130 0.00 0.00 0.00 3.32
4494 4919 4.889409 AGATGTCTGGTGAATGTTGTGTTT 59.111 37.500 0.00 0.00 0.00 2.83
4495 4920 5.360714 AGATGTCTGGTGAATGTTGTGTTTT 59.639 36.000 0.00 0.00 0.00 2.43
4496 4921 4.992688 TGTCTGGTGAATGTTGTGTTTTC 58.007 39.130 0.00 0.00 0.00 2.29
4497 4922 4.460731 TGTCTGGTGAATGTTGTGTTTTCA 59.539 37.500 0.00 0.00 0.00 2.69
4498 4923 5.036737 GTCTGGTGAATGTTGTGTTTTCAG 58.963 41.667 0.00 0.00 30.50 3.02
4499 4924 4.946772 TCTGGTGAATGTTGTGTTTTCAGA 59.053 37.500 0.00 0.00 30.50 3.27
4500 4925 4.992688 TGGTGAATGTTGTGTTTTCAGAC 58.007 39.130 0.00 0.00 30.50 3.51
4501 4926 4.035017 GGTGAATGTTGTGTTTTCAGACG 58.965 43.478 0.00 0.00 30.50 4.18
4502 4927 4.438200 GGTGAATGTTGTGTTTTCAGACGT 60.438 41.667 0.00 0.00 30.50 4.34
4503 4928 4.495472 GTGAATGTTGTGTTTTCAGACGTG 59.505 41.667 0.00 0.00 30.50 4.49
4504 4929 3.691049 ATGTTGTGTTTTCAGACGTGG 57.309 42.857 0.00 0.00 0.00 4.94
4505 4930 2.428491 TGTTGTGTTTTCAGACGTGGT 58.572 42.857 0.00 0.00 0.00 4.16
4506 4931 3.597255 TGTTGTGTTTTCAGACGTGGTA 58.403 40.909 0.00 0.00 0.00 3.25
4507 4932 4.193090 TGTTGTGTTTTCAGACGTGGTAT 58.807 39.130 0.00 0.00 0.00 2.73
4508 4933 4.034626 TGTTGTGTTTTCAGACGTGGTATG 59.965 41.667 0.00 0.00 0.00 2.39
4509 4934 3.135225 TGTGTTTTCAGACGTGGTATGG 58.865 45.455 0.00 0.00 0.00 2.74
4510 4935 3.181464 TGTGTTTTCAGACGTGGTATGGA 60.181 43.478 0.00 0.00 0.00 3.41
4511 4936 3.810941 GTGTTTTCAGACGTGGTATGGAA 59.189 43.478 0.00 0.00 0.00 3.53
4512 4937 4.454504 GTGTTTTCAGACGTGGTATGGAAT 59.545 41.667 0.00 0.00 0.00 3.01
4513 4938 4.454161 TGTTTTCAGACGTGGTATGGAATG 59.546 41.667 0.00 0.00 0.00 2.67
4514 4939 2.979814 TCAGACGTGGTATGGAATGG 57.020 50.000 0.00 0.00 0.00 3.16
4515 4940 1.484653 TCAGACGTGGTATGGAATGGG 59.515 52.381 0.00 0.00 0.00 4.00
4516 4941 1.484653 CAGACGTGGTATGGAATGGGA 59.515 52.381 0.00 0.00 0.00 4.37
4517 4942 2.104792 CAGACGTGGTATGGAATGGGAT 59.895 50.000 0.00 0.00 0.00 3.85
4518 4943 2.104792 AGACGTGGTATGGAATGGGATG 59.895 50.000 0.00 0.00 0.00 3.51
4519 4944 1.142870 ACGTGGTATGGAATGGGATGG 59.857 52.381 0.00 0.00 0.00 3.51
4520 4945 1.419762 CGTGGTATGGAATGGGATGGA 59.580 52.381 0.00 0.00 0.00 3.41
4521 4946 2.550855 CGTGGTATGGAATGGGATGGAG 60.551 54.545 0.00 0.00 0.00 3.86
4522 4947 1.425066 TGGTATGGAATGGGATGGAGC 59.575 52.381 0.00 0.00 0.00 4.70
4523 4948 1.425066 GGTATGGAATGGGATGGAGCA 59.575 52.381 0.00 0.00 0.00 4.26
4524 4949 2.553904 GGTATGGAATGGGATGGAGCAG 60.554 54.545 0.00 0.00 0.00 4.24
4525 4950 1.229131 ATGGAATGGGATGGAGCAGT 58.771 50.000 0.00 0.00 0.00 4.40
4526 4951 1.891933 TGGAATGGGATGGAGCAGTA 58.108 50.000 0.00 0.00 0.00 2.74
4527 4952 1.490490 TGGAATGGGATGGAGCAGTAC 59.510 52.381 0.00 0.00 0.00 2.73
4528 4953 1.771255 GGAATGGGATGGAGCAGTACT 59.229 52.381 0.00 0.00 0.00 2.73
4529 4954 2.972713 GGAATGGGATGGAGCAGTACTA 59.027 50.000 0.00 0.00 0.00 1.82
4530 4955 3.584848 GGAATGGGATGGAGCAGTACTAT 59.415 47.826 0.00 0.00 0.00 2.12
4531 4956 4.042187 GGAATGGGATGGAGCAGTACTATT 59.958 45.833 0.00 0.00 0.00 1.73
4532 4957 4.630644 ATGGGATGGAGCAGTACTATTG 57.369 45.455 0.00 0.00 0.00 1.90
4533 4958 2.705658 TGGGATGGAGCAGTACTATTGG 59.294 50.000 0.00 0.00 0.00 3.16
4534 4959 2.039084 GGGATGGAGCAGTACTATTGGG 59.961 54.545 0.00 0.00 0.00 4.12
4535 4960 2.706190 GGATGGAGCAGTACTATTGGGT 59.294 50.000 0.00 0.00 0.00 4.51
4536 4961 3.901844 GGATGGAGCAGTACTATTGGGTA 59.098 47.826 0.00 0.00 0.00 3.69
4537 4962 4.021016 GGATGGAGCAGTACTATTGGGTAG 60.021 50.000 0.00 0.00 36.44 3.18
4538 4963 4.259933 TGGAGCAGTACTATTGGGTAGA 57.740 45.455 0.00 0.00 34.38 2.59
4539 4964 4.215908 TGGAGCAGTACTATTGGGTAGAG 58.784 47.826 0.00 0.00 34.38 2.43
4540 4965 3.006003 GGAGCAGTACTATTGGGTAGAGC 59.994 52.174 0.00 0.00 34.38 4.09
4541 4966 3.892588 GAGCAGTACTATTGGGTAGAGCT 59.107 47.826 0.00 0.00 36.43 4.09
4542 4967 3.639094 AGCAGTACTATTGGGTAGAGCTG 59.361 47.826 0.00 0.00 38.01 4.24
4543 4968 3.385111 GCAGTACTATTGGGTAGAGCTGT 59.615 47.826 0.00 0.00 37.66 4.40
4544 4969 4.737946 GCAGTACTATTGGGTAGAGCTGTG 60.738 50.000 0.00 0.00 37.66 3.66
4545 4970 4.402793 CAGTACTATTGGGTAGAGCTGTGT 59.597 45.833 0.00 0.00 34.38 3.72
4546 4971 3.895232 ACTATTGGGTAGAGCTGTGTG 57.105 47.619 0.00 0.00 34.38 3.82
4587 5012 1.398390 GTGTATGGTTACTGCAGCAGC 59.602 52.381 23.05 11.22 42.57 5.25
4614 5039 4.393834 TGTTTTGGCAGCATGAACTAGTA 58.606 39.130 0.00 0.00 39.69 1.82
4615 5040 4.215399 TGTTTTGGCAGCATGAACTAGTAC 59.785 41.667 0.00 0.00 39.69 2.73
4616 5041 3.981071 TTGGCAGCATGAACTAGTACT 57.019 42.857 0.00 0.00 39.69 2.73
4618 5043 4.286297 TGGCAGCATGAACTAGTACTTT 57.714 40.909 0.00 0.00 39.69 2.66
4619 5044 4.651778 TGGCAGCATGAACTAGTACTTTT 58.348 39.130 0.00 0.00 39.69 2.27
4621 5046 5.048782 TGGCAGCATGAACTAGTACTTTTTG 60.049 40.000 0.00 0.00 39.69 2.44
4623 5048 6.148811 GGCAGCATGAACTAGTACTTTTTGTA 59.851 38.462 0.00 0.00 39.69 2.41
4625 5050 8.879759 GCAGCATGAACTAGTACTTTTTGTATA 58.120 33.333 0.00 0.00 39.69 1.47
4645 5070 9.982291 TTGTATAAACTCAATAACGAAATGCTC 57.018 29.630 0.00 0.00 0.00 4.26
4646 5071 9.157104 TGTATAAACTCAATAACGAAATGCTCA 57.843 29.630 0.00 0.00 0.00 4.26
4647 5072 9.982291 GTATAAACTCAATAACGAAATGCTCAA 57.018 29.630 0.00 0.00 0.00 3.02
4649 5074 9.906660 ATAAACTCAATAACGAAATGCTCAAAA 57.093 25.926 0.00 0.00 0.00 2.44
4650 5075 7.858052 AACTCAATAACGAAATGCTCAAAAG 57.142 32.000 0.00 0.00 0.00 2.27
4651 5076 7.202016 ACTCAATAACGAAATGCTCAAAAGA 57.798 32.000 0.00 0.00 0.00 2.52
4652 5077 7.820648 ACTCAATAACGAAATGCTCAAAAGAT 58.179 30.769 0.00 0.00 0.00 2.40
4653 5078 7.752239 ACTCAATAACGAAATGCTCAAAAGATG 59.248 33.333 0.00 0.00 0.00 2.90
4654 5079 7.815641 TCAATAACGAAATGCTCAAAAGATGA 58.184 30.769 0.00 0.00 36.38 2.92
4655 5080 8.461222 TCAATAACGAAATGCTCAAAAGATGAT 58.539 29.630 0.00 0.00 37.44 2.45
4656 5081 8.529102 CAATAACGAAATGCTCAAAAGATGATG 58.471 33.333 0.00 0.00 37.44 3.07
4657 5082 5.885230 ACGAAATGCTCAAAAGATGATGA 57.115 34.783 0.00 0.00 37.44 2.92
4658 5083 6.258230 ACGAAATGCTCAAAAGATGATGAA 57.742 33.333 0.00 0.00 37.44 2.57
4659 5084 6.088824 ACGAAATGCTCAAAAGATGATGAAC 58.911 36.000 0.00 0.00 37.44 3.18
4660 5085 6.072286 ACGAAATGCTCAAAAGATGATGAACT 60.072 34.615 0.00 0.00 37.44 3.01
4661 5086 7.119699 ACGAAATGCTCAAAAGATGATGAACTA 59.880 33.333 0.00 0.00 37.44 2.24
4662 5087 7.639072 CGAAATGCTCAAAAGATGATGAACTAG 59.361 37.037 0.00 0.00 37.44 2.57
4663 5088 7.934855 AATGCTCAAAAGATGATGAACTAGT 57.065 32.000 0.00 0.00 37.44 2.57
4664 5089 7.934855 ATGCTCAAAAGATGATGAACTAGTT 57.065 32.000 8.13 8.13 37.44 2.24
4665 5090 7.369803 TGCTCAAAAGATGATGAACTAGTTC 57.630 36.000 25.73 25.73 37.44 3.01
4674 5099 2.857186 TGAACTAGTTCATGCTGCCA 57.143 45.000 30.07 9.44 43.90 4.92
4699 5124 0.622665 ATAAACTGCTGCAGGCTCCT 59.377 50.000 31.00 9.20 42.39 3.69
4820 5245 8.201464 AGACCGGATTTGAAATTGTTTAAAACT 58.799 29.630 9.46 0.00 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 70 1.336517 CGAGAACCGAAACAGTAGCCA 60.337 52.381 0.00 0.00 41.76 4.75
91 93 1.076513 TGGCACTGGTCCACTCTAGTA 59.923 52.381 0.00 0.00 0.00 1.82
92 94 0.178932 TGGCACTGGTCCACTCTAGT 60.179 55.000 0.00 0.00 0.00 2.57
93 95 2.671145 TGGCACTGGTCCACTCTAG 58.329 57.895 0.00 0.00 0.00 2.43
108 110 2.024414 GAGAGAGAGAGGAGAAGTGGC 58.976 57.143 0.00 0.00 0.00 5.01
130 134 3.426309 TACTCTACTCGGGCGGGGG 62.426 68.421 0.00 0.00 0.00 5.40
187 191 3.751479 ATTTTTCTCACCTTGGGTTGC 57.249 42.857 0.00 0.00 31.02 4.17
220 224 2.171840 CCCCTCTCTCTCTTCAAACGA 58.828 52.381 0.00 0.00 0.00 3.85
238 242 4.785453 CCGCTGCTGTTCTCCCCC 62.785 72.222 0.00 0.00 0.00 5.40
240 244 1.153549 CTACCGCTGCTGTTCTCCC 60.154 63.158 1.15 0.00 0.00 4.30
243 247 3.382111 AGCTACCGCTGCTGTTCT 58.618 55.556 1.15 0.00 46.86 3.01
253 257 1.436336 CGTAGTTGGGGAGCTACCG 59.564 63.158 9.48 0.00 40.11 4.02
543 756 1.895798 TCTCTTGCTCGAACACCAGAT 59.104 47.619 0.00 0.00 0.00 2.90
569 782 3.932580 GACACGCCGTGCTCATCCA 62.933 63.158 18.59 0.00 36.98 3.41
571 784 3.188786 GGACACGCCGTGCTCATC 61.189 66.667 18.59 7.11 36.98 2.92
572 785 3.695606 AGGACACGCCGTGCTCAT 61.696 61.111 18.59 9.04 44.03 2.90
610 831 2.784596 CGTGCACGCACCTAATGG 59.215 61.111 28.16 0.00 43.49 3.16
712 940 1.474077 GGGATCGAGCAAGCAAACAAT 59.526 47.619 1.84 0.00 0.00 2.71
746 974 1.480954 GGCTGGAGATAACAACCGAGA 59.519 52.381 0.00 0.00 0.00 4.04
1192 1454 3.362797 CTGCTGCTGGTGCTGGTG 61.363 66.667 0.00 0.00 40.48 4.17
1195 1457 3.738246 CTGCTGCTGCTGGTGCTG 61.738 66.667 17.00 4.75 40.48 4.41
1723 1994 5.789710 TGGCAAGTTAGTTAGATTTACGC 57.210 39.130 0.00 0.00 0.00 4.42
1725 1996 8.391106 CAGACATGGCAAGTTAGTTAGATTTAC 58.609 37.037 0.00 0.00 0.00 2.01
1877 2154 6.946009 TGGGGAAGGAATAAACAAAGTAAGAG 59.054 38.462 0.00 0.00 0.00 2.85
1967 2244 2.679349 GCTAGCAGCTAGTCAAAGGCTT 60.679 50.000 27.00 0.00 38.45 4.35
1980 2257 0.456221 TCCAACTACTCGCTAGCAGC 59.544 55.000 16.45 0.00 38.02 5.25
1981 2258 1.535015 GCTCCAACTACTCGCTAGCAG 60.535 57.143 16.45 13.37 0.00 4.24
1982 2259 0.456221 GCTCCAACTACTCGCTAGCA 59.544 55.000 16.45 0.92 0.00 3.49
2010 2287 5.907662 TCCTCCTCTCATGTTCCTTTGATAT 59.092 40.000 0.00 0.00 0.00 1.63
2283 2560 5.627735 GCTCCTGATCTAGATGAACCAAACA 60.628 44.000 10.74 0.00 0.00 2.83
2369 2662 3.052455 TCTTCAGGCGCAATTAACTCA 57.948 42.857 10.83 0.00 0.00 3.41
2379 2672 4.622701 AAGACATTATTTCTTCAGGCGC 57.377 40.909 0.00 0.00 0.00 6.53
2390 2683 5.985911 ACCTACACCGCTTAAGACATTATT 58.014 37.500 6.67 0.00 0.00 1.40
2400 2693 4.010667 ACATTGAAACCTACACCGCTTA 57.989 40.909 0.00 0.00 0.00 3.09
2404 2697 4.201970 ACAACAACATTGAAACCTACACCG 60.202 41.667 0.00 0.00 0.00 4.94
2561 2857 1.877443 GCACGTAAACCACACCAGAAT 59.123 47.619 0.00 0.00 0.00 2.40
2562 2858 1.301423 GCACGTAAACCACACCAGAA 58.699 50.000 0.00 0.00 0.00 3.02
2563 2859 0.178301 TGCACGTAAACCACACCAGA 59.822 50.000 0.00 0.00 0.00 3.86
2564 2860 1.234821 ATGCACGTAAACCACACCAG 58.765 50.000 0.00 0.00 0.00 4.00
2565 2861 2.037381 TCTATGCACGTAAACCACACCA 59.963 45.455 0.00 0.00 0.00 4.17
2566 2862 2.690786 TCTATGCACGTAAACCACACC 58.309 47.619 0.00 0.00 0.00 4.16
2567 2863 3.930229 TGATCTATGCACGTAAACCACAC 59.070 43.478 0.00 0.00 0.00 3.82
2568 2864 4.081917 TCTGATCTATGCACGTAAACCACA 60.082 41.667 0.00 0.00 0.00 4.17
2634 2930 7.158021 ACCAAAGAAAAATCACAAACAACTCA 58.842 30.769 0.00 0.00 0.00 3.41
2639 2935 6.634805 TGCTACCAAAGAAAAATCACAAACA 58.365 32.000 0.00 0.00 0.00 2.83
2658 2954 7.151308 AGCTCACTATATCATTGAGTTGCTAC 58.849 38.462 8.96 0.00 39.23 3.58
2703 2999 3.632145 GCAGGTGACTCCTCAAAAGAAAA 59.368 43.478 0.00 0.00 46.24 2.29
2736 3032 3.512329 ACAGAAATTGCATGGCATTGAGA 59.488 39.130 0.00 0.00 38.76 3.27
2763 3059 6.292061 GCATGAAGTGACGACAGAATTAGATC 60.292 42.308 0.00 0.00 0.00 2.75
2807 3103 7.341445 TCAGCCACTAAAAACATAAACAAGT 57.659 32.000 0.00 0.00 0.00 3.16
2812 3108 7.049799 AGCTTTCAGCCACTAAAAACATAAA 57.950 32.000 0.00 0.00 43.77 1.40
2821 3117 6.458232 TTAAAACAAGCTTTCAGCCACTAA 57.542 33.333 0.00 0.00 43.77 2.24
2851 3147 3.009363 TCCTGTCATGAAAAGAGATGGCA 59.991 43.478 0.00 0.00 33.27 4.92
2997 3293 8.965172 CACACAAGATAATTACATACCTCGTAC 58.035 37.037 0.00 0.00 0.00 3.67
3000 3296 7.169308 GTCCACACAAGATAATTACATACCTCG 59.831 40.741 0.00 0.00 0.00 4.63
3007 3303 9.599866 CTATTCAGTCCACACAAGATAATTACA 57.400 33.333 0.00 0.00 0.00 2.41
3040 3336 8.347771 CAAGTATATGTAGAATGTGCAAGCATT 58.652 33.333 2.39 2.39 41.28 3.56
3084 3380 9.601971 TTACGAATAAATTACAGCAAAGAACAC 57.398 29.630 0.00 0.00 0.00 3.32
3120 3416 7.334421 ACATGGACTTCTGTTTGATGTGTATAC 59.666 37.037 0.00 0.00 33.86 1.47
3139 3435 4.273148 ACTCCTACTGAAACACATGGAC 57.727 45.455 0.00 0.00 0.00 4.02
3153 3449 9.563748 AGTATCAGACTCAAATAGTACTCCTAC 57.436 37.037 0.00 0.00 39.07 3.18
3213 3509 9.823647 CTCTATGAATGTAATACAAGGTGAAGT 57.176 33.333 0.00 0.00 0.00 3.01
3217 3513 8.668510 AAGCTCTATGAATGTAATACAAGGTG 57.331 34.615 0.00 0.00 0.00 4.00
3256 3678 9.678260 GAATCATATATCAGGAAGTTAGCCAAT 57.322 33.333 0.00 0.00 0.00 3.16
3268 3690 5.183969 CCTGCACCAGAATCATATATCAGG 58.816 45.833 0.00 0.00 32.44 3.86
3269 3691 5.183969 CCCTGCACCAGAATCATATATCAG 58.816 45.833 0.00 0.00 32.44 2.90
3460 3882 4.162651 AGGCAGAGACAATTCCCAAATTT 58.837 39.130 0.00 0.00 32.69 1.82
3482 3904 5.837437 ACATATTGAACAAAACGGAGCAAA 58.163 33.333 0.00 0.00 0.00 3.68
3484 3906 4.517075 TGACATATTGAACAAAACGGAGCA 59.483 37.500 0.00 0.00 0.00 4.26
3490 3912 8.763356 TCAGCATTTTGACATATTGAACAAAAC 58.237 29.630 0.00 0.00 38.57 2.43
3522 3945 2.489329 CGACAACCTGATGCCAAAGATT 59.511 45.455 0.00 0.00 0.00 2.40
3530 3953 2.159226 ACTAGCTACGACAACCTGATGC 60.159 50.000 0.00 0.00 0.00 3.91
3545 3968 2.766828 ACCTTCGGCTATGAAACTAGCT 59.233 45.455 0.00 0.00 43.02 3.32
3689 4112 3.785859 GGGCTGCCGGAGTCATCA 61.786 66.667 13.40 0.00 0.00 3.07
3800 4223 3.362399 CTGATGGTGCGCCGAGAGT 62.362 63.158 12.58 0.00 37.67 3.24
3978 4401 2.744741 GCCAGAGAGCAAGAACCTAAAC 59.255 50.000 0.00 0.00 0.00 2.01
4009 4432 7.117956 GCGGCTAAATTAATCTTACTTAGGGAG 59.882 40.741 0.00 0.00 0.00 4.30
4182 4605 6.876257 CAGGTAAACAAGCTAGAGTTCTTGAT 59.124 38.462 12.93 1.03 41.50 2.57
4217 4640 4.996434 ACACACCCGAGCAGCAGC 62.996 66.667 0.00 0.00 42.56 5.25
4226 4649 0.599558 TAGAAGACCGAACACACCCG 59.400 55.000 0.00 0.00 0.00 5.28
4228 4651 2.295349 TCAGTAGAAGACCGAACACACC 59.705 50.000 0.00 0.00 0.00 4.16
4236 4659 3.066064 CCAGACATCTCAGTAGAAGACCG 59.934 52.174 0.00 0.00 34.73 4.79
4237 4660 4.020543 ACCAGACATCTCAGTAGAAGACC 58.979 47.826 0.00 0.00 34.73 3.85
4258 4683 4.495472 CACGTCTGAAAACACAACATTCAC 59.505 41.667 0.00 0.00 0.00 3.18
4259 4684 4.438065 CCACGTCTGAAAACACAACATTCA 60.438 41.667 0.00 0.00 0.00 2.57
4260 4685 4.035017 CCACGTCTGAAAACACAACATTC 58.965 43.478 0.00 0.00 0.00 2.67
4261 4686 3.442273 ACCACGTCTGAAAACACAACATT 59.558 39.130 0.00 0.00 0.00 2.71
4262 4687 3.013921 ACCACGTCTGAAAACACAACAT 58.986 40.909 0.00 0.00 0.00 2.71
4263 4688 2.428491 ACCACGTCTGAAAACACAACA 58.572 42.857 0.00 0.00 0.00 3.33
4264 4689 4.523813 CATACCACGTCTGAAAACACAAC 58.476 43.478 0.00 0.00 0.00 3.32
4288 4713 4.202503 CCAATAGTACTGCTCCATCCCATT 60.203 45.833 5.39 0.00 0.00 3.16
4289 4714 3.328931 CCAATAGTACTGCTCCATCCCAT 59.671 47.826 5.39 0.00 0.00 4.00
4290 4715 2.705658 CCAATAGTACTGCTCCATCCCA 59.294 50.000 5.39 0.00 0.00 4.37
4291 4716 2.039084 CCCAATAGTACTGCTCCATCCC 59.961 54.545 5.39 0.00 0.00 3.85
4292 4717 2.706190 ACCCAATAGTACTGCTCCATCC 59.294 50.000 5.39 0.00 0.00 3.51
4293 4718 4.833380 TCTACCCAATAGTACTGCTCCATC 59.167 45.833 5.39 0.00 32.13 3.51
4294 4719 4.816126 TCTACCCAATAGTACTGCTCCAT 58.184 43.478 5.39 0.00 32.13 3.41
4295 4720 4.215908 CTCTACCCAATAGTACTGCTCCA 58.784 47.826 5.39 0.00 32.13 3.86
4296 4721 3.006003 GCTCTACCCAATAGTACTGCTCC 59.994 52.174 5.39 0.00 32.13 4.70
4297 4722 3.892588 AGCTCTACCCAATAGTACTGCTC 59.107 47.826 5.39 0.00 32.13 4.26
4298 4723 3.639094 CAGCTCTACCCAATAGTACTGCT 59.361 47.826 5.39 0.00 32.20 4.24
4299 4724 3.385111 ACAGCTCTACCCAATAGTACTGC 59.615 47.826 5.39 0.00 37.92 4.40
4300 4725 4.402793 ACACAGCTCTACCCAATAGTACTG 59.597 45.833 5.39 0.00 39.15 2.74
4301 4726 4.402793 CACACAGCTCTACCCAATAGTACT 59.597 45.833 0.00 0.00 32.13 2.73
4302 4727 4.683832 CACACAGCTCTACCCAATAGTAC 58.316 47.826 0.00 0.00 32.13 2.73
4303 4728 3.132289 GCACACAGCTCTACCCAATAGTA 59.868 47.826 0.00 0.00 41.15 1.82
4304 4729 2.093447 GCACACAGCTCTACCCAATAGT 60.093 50.000 0.00 0.00 41.15 2.12
4305 4730 2.555199 GCACACAGCTCTACCCAATAG 58.445 52.381 0.00 0.00 41.15 1.73
4306 4731 1.134818 CGCACACAGCTCTACCCAATA 60.135 52.381 0.00 0.00 42.61 1.90
4307 4732 0.391661 CGCACACAGCTCTACCCAAT 60.392 55.000 0.00 0.00 42.61 3.16
4308 4733 1.005037 CGCACACAGCTCTACCCAA 60.005 57.895 0.00 0.00 42.61 4.12
4309 4734 2.656646 CGCACACAGCTCTACCCA 59.343 61.111 0.00 0.00 42.61 4.51
4310 4735 2.815647 GCGCACACAGCTCTACCC 60.816 66.667 0.30 0.00 42.61 3.69
4311 4736 2.097038 CAGCGCACACAGCTCTACC 61.097 63.158 11.47 0.00 44.06 3.18
4312 4737 2.734673 GCAGCGCACACAGCTCTAC 61.735 63.158 11.47 0.00 44.06 2.59
4313 4738 2.433145 GCAGCGCACACAGCTCTA 60.433 61.111 11.47 0.00 44.06 2.43
4314 4739 4.311445 AGCAGCGCACACAGCTCT 62.311 61.111 11.47 0.00 44.06 4.09
4315 4740 4.086178 CAGCAGCGCACACAGCTC 62.086 66.667 11.47 0.00 44.06 4.09
4326 4751 4.996434 ACACACCCGAGCAGCAGC 62.996 66.667 0.00 0.00 42.56 5.25
4327 4752 2.281070 AACACACCCGAGCAGCAG 60.281 61.111 0.00 0.00 0.00 4.24
4328 4753 2.591429 CAACACACCCGAGCAGCA 60.591 61.111 0.00 0.00 0.00 4.41
4329 4754 2.591715 ACAACACACCCGAGCAGC 60.592 61.111 0.00 0.00 0.00 5.25
4330 4755 2.310233 CGACAACACACCCGAGCAG 61.310 63.158 0.00 0.00 0.00 4.24
4331 4756 2.279851 CGACAACACACCCGAGCA 60.280 61.111 0.00 0.00 0.00 4.26
4332 4757 3.041940 CCGACAACACACCCGAGC 61.042 66.667 0.00 0.00 0.00 5.03
4333 4758 1.663702 GACCGACAACACACCCGAG 60.664 63.158 0.00 0.00 0.00 4.63
4334 4759 1.678598 AAGACCGACAACACACCCGA 61.679 55.000 0.00 0.00 0.00 5.14
4335 4760 1.219522 GAAGACCGACAACACACCCG 61.220 60.000 0.00 0.00 0.00 5.28
4336 4761 0.106149 AGAAGACCGACAACACACCC 59.894 55.000 0.00 0.00 0.00 4.61
4337 4762 2.035576 AGTAGAAGACCGACAACACACC 59.964 50.000 0.00 0.00 0.00 4.16
4338 4763 3.366440 AGTAGAAGACCGACAACACAC 57.634 47.619 0.00 0.00 0.00 3.82
4339 4764 4.823442 TCTTAGTAGAAGACCGACAACACA 59.177 41.667 0.00 0.00 0.00 3.72
4340 4765 5.368256 TCTTAGTAGAAGACCGACAACAC 57.632 43.478 0.00 0.00 0.00 3.32
4341 4766 5.475909 ACATCTTAGTAGAAGACCGACAACA 59.524 40.000 0.00 0.00 33.20 3.33
4342 4767 5.952033 ACATCTTAGTAGAAGACCGACAAC 58.048 41.667 0.00 0.00 33.20 3.32
4343 4768 5.944599 AGACATCTTAGTAGAAGACCGACAA 59.055 40.000 0.00 0.00 33.20 3.18
4344 4769 5.354513 CAGACATCTTAGTAGAAGACCGACA 59.645 44.000 0.00 0.00 33.20 4.35
4345 4770 5.220892 CCAGACATCTTAGTAGAAGACCGAC 60.221 48.000 0.00 0.00 33.20 4.79
4346 4771 4.882427 CCAGACATCTTAGTAGAAGACCGA 59.118 45.833 0.00 0.00 33.20 4.69
4347 4772 4.641094 ACCAGACATCTTAGTAGAAGACCG 59.359 45.833 0.00 0.00 33.20 4.79
4348 4773 5.652891 TCACCAGACATCTTAGTAGAAGACC 59.347 44.000 0.00 0.00 33.20 3.85
4349 4774 6.761099 TCACCAGACATCTTAGTAGAAGAC 57.239 41.667 0.00 0.00 33.20 3.01
4350 4775 7.397476 ACATTCACCAGACATCTTAGTAGAAGA 59.603 37.037 0.00 0.00 33.20 2.87
4351 4776 7.551585 ACATTCACCAGACATCTTAGTAGAAG 58.448 38.462 0.00 0.00 33.20 2.85
4352 4777 7.482169 ACATTCACCAGACATCTTAGTAGAA 57.518 36.000 0.00 0.00 33.20 2.10
4353 4778 7.039011 ACAACATTCACCAGACATCTTAGTAGA 60.039 37.037 0.00 0.00 34.21 2.59
4354 4779 7.063898 CACAACATTCACCAGACATCTTAGTAG 59.936 40.741 0.00 0.00 0.00 2.57
4355 4780 6.873605 CACAACATTCACCAGACATCTTAGTA 59.126 38.462 0.00 0.00 0.00 1.82
4356 4781 5.702670 CACAACATTCACCAGACATCTTAGT 59.297 40.000 0.00 0.00 0.00 2.24
4357 4782 5.702670 ACACAACATTCACCAGACATCTTAG 59.297 40.000 0.00 0.00 0.00 2.18
4358 4783 5.620206 ACACAACATTCACCAGACATCTTA 58.380 37.500 0.00 0.00 0.00 2.10
4359 4784 4.464008 ACACAACATTCACCAGACATCTT 58.536 39.130 0.00 0.00 0.00 2.40
4360 4785 4.090761 ACACAACATTCACCAGACATCT 57.909 40.909 0.00 0.00 0.00 2.90
4361 4786 4.836125 AACACAACATTCACCAGACATC 57.164 40.909 0.00 0.00 0.00 3.06
4362 4787 5.126869 TGAAAACACAACATTCACCAGACAT 59.873 36.000 0.00 0.00 0.00 3.06
4363 4788 4.460731 TGAAAACACAACATTCACCAGACA 59.539 37.500 0.00 0.00 0.00 3.41
4364 4789 4.992688 TGAAAACACAACATTCACCAGAC 58.007 39.130 0.00 0.00 0.00 3.51
4365 4790 4.946772 TCTGAAAACACAACATTCACCAGA 59.053 37.500 0.00 0.00 0.00 3.86
4366 4791 5.036737 GTCTGAAAACACAACATTCACCAG 58.963 41.667 0.00 0.00 0.00 4.00
4367 4792 4.438065 CGTCTGAAAACACAACATTCACCA 60.438 41.667 0.00 0.00 0.00 4.17
4368 4793 4.035017 CGTCTGAAAACACAACATTCACC 58.965 43.478 0.00 0.00 0.00 4.02
4369 4794 4.495472 CACGTCTGAAAACACAACATTCAC 59.505 41.667 0.00 0.00 0.00 3.18
4370 4795 4.438065 CCACGTCTGAAAACACAACATTCA 60.438 41.667 0.00 0.00 0.00 2.57
4371 4796 4.035017 CCACGTCTGAAAACACAACATTC 58.965 43.478 0.00 0.00 0.00 2.67
4372 4797 3.442273 ACCACGTCTGAAAACACAACATT 59.558 39.130 0.00 0.00 0.00 2.71
4373 4798 3.013921 ACCACGTCTGAAAACACAACAT 58.986 40.909 0.00 0.00 0.00 2.71
4374 4799 2.428491 ACCACGTCTGAAAACACAACA 58.572 42.857 0.00 0.00 0.00 3.33
4375 4800 4.523813 CATACCACGTCTGAAAACACAAC 58.476 43.478 0.00 0.00 0.00 3.32
4376 4801 3.562141 CCATACCACGTCTGAAAACACAA 59.438 43.478 0.00 0.00 0.00 3.33
4377 4802 3.135225 CCATACCACGTCTGAAAACACA 58.865 45.455 0.00 0.00 0.00 3.72
4378 4803 3.395639 TCCATACCACGTCTGAAAACAC 58.604 45.455 0.00 0.00 0.00 3.32
4379 4804 3.755112 TCCATACCACGTCTGAAAACA 57.245 42.857 0.00 0.00 0.00 2.83
4380 4805 4.142687 CCATTCCATACCACGTCTGAAAAC 60.143 45.833 0.00 0.00 0.00 2.43
4381 4806 4.006989 CCATTCCATACCACGTCTGAAAA 58.993 43.478 0.00 0.00 0.00 2.29
4382 4807 3.605634 CCATTCCATACCACGTCTGAAA 58.394 45.455 0.00 0.00 0.00 2.69
4383 4808 2.093181 CCCATTCCATACCACGTCTGAA 60.093 50.000 0.00 0.00 0.00 3.02
4384 4809 1.484653 CCCATTCCATACCACGTCTGA 59.515 52.381 0.00 0.00 0.00 3.27
4385 4810 1.484653 TCCCATTCCATACCACGTCTG 59.515 52.381 0.00 0.00 0.00 3.51
4386 4811 1.874129 TCCCATTCCATACCACGTCT 58.126 50.000 0.00 0.00 0.00 4.18
4387 4812 2.494059 CATCCCATTCCATACCACGTC 58.506 52.381 0.00 0.00 0.00 4.34
4388 4813 1.142870 CCATCCCATTCCATACCACGT 59.857 52.381 0.00 0.00 0.00 4.49
4389 4814 1.419762 TCCATCCCATTCCATACCACG 59.580 52.381 0.00 0.00 0.00 4.94
4390 4815 2.815589 GCTCCATCCCATTCCATACCAC 60.816 54.545 0.00 0.00 0.00 4.16
4391 4816 1.425066 GCTCCATCCCATTCCATACCA 59.575 52.381 0.00 0.00 0.00 3.25
4392 4817 1.425066 TGCTCCATCCCATTCCATACC 59.575 52.381 0.00 0.00 0.00 2.73
4393 4818 2.107204 ACTGCTCCATCCCATTCCATAC 59.893 50.000 0.00 0.00 0.00 2.39
4394 4819 2.421725 ACTGCTCCATCCCATTCCATA 58.578 47.619 0.00 0.00 0.00 2.74
4395 4820 1.229131 ACTGCTCCATCCCATTCCAT 58.771 50.000 0.00 0.00 0.00 3.41
4396 4821 1.490490 GTACTGCTCCATCCCATTCCA 59.510 52.381 0.00 0.00 0.00 3.53
4397 4822 1.771255 AGTACTGCTCCATCCCATTCC 59.229 52.381 0.00 0.00 0.00 3.01
4416 4841 2.555199 GCACACAGCTCTACCCAATAG 58.445 52.381 0.00 0.00 41.15 1.73
4425 4850 4.311445 AGCAGCGCACACAGCTCT 62.311 61.111 11.47 0.00 44.06 4.09
4437 4862 4.996434 ACACACCCGAGCAGCAGC 62.996 66.667 0.00 0.00 42.56 5.25
4438 4863 2.281070 AACACACCCGAGCAGCAG 60.281 61.111 0.00 0.00 0.00 4.24
4439 4864 2.591429 CAACACACCCGAGCAGCA 60.591 61.111 0.00 0.00 0.00 4.41
4440 4865 2.591715 ACAACACACCCGAGCAGC 60.592 61.111 0.00 0.00 0.00 5.25
4441 4866 2.310233 CGACAACACACCCGAGCAG 61.310 63.158 0.00 0.00 0.00 4.24
4442 4867 2.279851 CGACAACACACCCGAGCA 60.280 61.111 0.00 0.00 0.00 4.26
4443 4868 3.041940 CCGACAACACACCCGAGC 61.042 66.667 0.00 0.00 0.00 5.03
4444 4869 1.663702 GACCGACAACACACCCGAG 60.664 63.158 0.00 0.00 0.00 4.63
4445 4870 1.678598 AAGACCGACAACACACCCGA 61.679 55.000 0.00 0.00 0.00 5.14
4446 4871 1.219522 GAAGACCGACAACACACCCG 61.220 60.000 0.00 0.00 0.00 5.28
4447 4872 0.106149 AGAAGACCGACAACACACCC 59.894 55.000 0.00 0.00 0.00 4.61
4448 4873 2.035576 AGTAGAAGACCGACAACACACC 59.964 50.000 0.00 0.00 0.00 4.16
4449 4874 3.050619 CAGTAGAAGACCGACAACACAC 58.949 50.000 0.00 0.00 0.00 3.82
4450 4875 2.953648 TCAGTAGAAGACCGACAACACA 59.046 45.455 0.00 0.00 0.00 3.72
4451 4876 3.252701 TCTCAGTAGAAGACCGACAACAC 59.747 47.826 0.00 0.00 0.00 3.32
4452 4877 3.483421 TCTCAGTAGAAGACCGACAACA 58.517 45.455 0.00 0.00 0.00 3.33
4453 4878 4.082679 ACATCTCAGTAGAAGACCGACAAC 60.083 45.833 0.00 0.00 34.73 3.32
4454 4879 4.079970 ACATCTCAGTAGAAGACCGACAA 58.920 43.478 0.00 0.00 34.73 3.18
4455 4880 3.687125 ACATCTCAGTAGAAGACCGACA 58.313 45.455 0.00 0.00 34.73 4.35
4456 4881 3.942748 AGACATCTCAGTAGAAGACCGAC 59.057 47.826 0.00 0.00 34.73 4.79
4457 4882 3.942115 CAGACATCTCAGTAGAAGACCGA 59.058 47.826 0.00 0.00 34.73 4.69
4458 4883 3.066064 CCAGACATCTCAGTAGAAGACCG 59.934 52.174 0.00 0.00 34.73 4.79
4459 4884 4.020543 ACCAGACATCTCAGTAGAAGACC 58.979 47.826 0.00 0.00 34.73 3.85
4460 4885 4.702612 TCACCAGACATCTCAGTAGAAGAC 59.297 45.833 0.00 0.00 34.73 3.01
4461 4886 4.923415 TCACCAGACATCTCAGTAGAAGA 58.077 43.478 0.00 0.00 34.73 2.87
4462 4887 5.651387 TTCACCAGACATCTCAGTAGAAG 57.349 43.478 0.00 0.00 34.73 2.85
4463 4888 5.481824 ACATTCACCAGACATCTCAGTAGAA 59.518 40.000 0.00 0.00 34.73 2.10
4464 4889 5.019470 ACATTCACCAGACATCTCAGTAGA 58.981 41.667 0.00 0.00 35.80 2.59
4465 4890 5.336150 ACATTCACCAGACATCTCAGTAG 57.664 43.478 0.00 0.00 0.00 2.57
4466 4891 5.012046 ACAACATTCACCAGACATCTCAGTA 59.988 40.000 0.00 0.00 0.00 2.74
4467 4892 4.202398 ACAACATTCACCAGACATCTCAGT 60.202 41.667 0.00 0.00 0.00 3.41
4468 4893 4.153655 CACAACATTCACCAGACATCTCAG 59.846 45.833 0.00 0.00 0.00 3.35
4469 4894 4.067192 CACAACATTCACCAGACATCTCA 58.933 43.478 0.00 0.00 0.00 3.27
4470 4895 4.067896 ACACAACATTCACCAGACATCTC 58.932 43.478 0.00 0.00 0.00 2.75
4471 4896 4.090761 ACACAACATTCACCAGACATCT 57.909 40.909 0.00 0.00 0.00 2.90
4472 4897 4.836125 AACACAACATTCACCAGACATC 57.164 40.909 0.00 0.00 0.00 3.06
4473 4898 5.126869 TGAAAACACAACATTCACCAGACAT 59.873 36.000 0.00 0.00 0.00 3.06
4474 4899 4.460731 TGAAAACACAACATTCACCAGACA 59.539 37.500 0.00 0.00 0.00 3.41
4475 4900 4.992688 TGAAAACACAACATTCACCAGAC 58.007 39.130 0.00 0.00 0.00 3.51
4476 4901 4.946772 TCTGAAAACACAACATTCACCAGA 59.053 37.500 0.00 0.00 0.00 3.86
4477 4902 5.036737 GTCTGAAAACACAACATTCACCAG 58.963 41.667 0.00 0.00 0.00 4.00
4478 4903 4.438065 CGTCTGAAAACACAACATTCACCA 60.438 41.667 0.00 0.00 0.00 4.17
4479 4904 4.035017 CGTCTGAAAACACAACATTCACC 58.965 43.478 0.00 0.00 0.00 4.02
4480 4905 4.495472 CACGTCTGAAAACACAACATTCAC 59.505 41.667 0.00 0.00 0.00 3.18
4481 4906 4.438065 CCACGTCTGAAAACACAACATTCA 60.438 41.667 0.00 0.00 0.00 2.57
4482 4907 4.035017 CCACGTCTGAAAACACAACATTC 58.965 43.478 0.00 0.00 0.00 2.67
4483 4908 3.442273 ACCACGTCTGAAAACACAACATT 59.558 39.130 0.00 0.00 0.00 2.71
4484 4909 3.013921 ACCACGTCTGAAAACACAACAT 58.986 40.909 0.00 0.00 0.00 2.71
4485 4910 2.428491 ACCACGTCTGAAAACACAACA 58.572 42.857 0.00 0.00 0.00 3.33
4486 4911 4.523813 CATACCACGTCTGAAAACACAAC 58.476 43.478 0.00 0.00 0.00 3.32
4487 4912 3.562141 CCATACCACGTCTGAAAACACAA 59.438 43.478 0.00 0.00 0.00 3.33
4488 4913 3.135225 CCATACCACGTCTGAAAACACA 58.865 45.455 0.00 0.00 0.00 3.72
4489 4914 3.395639 TCCATACCACGTCTGAAAACAC 58.604 45.455 0.00 0.00 0.00 3.32
4490 4915 3.755112 TCCATACCACGTCTGAAAACA 57.245 42.857 0.00 0.00 0.00 2.83
4491 4916 4.142687 CCATTCCATACCACGTCTGAAAAC 60.143 45.833 0.00 0.00 0.00 2.43
4492 4917 4.006989 CCATTCCATACCACGTCTGAAAA 58.993 43.478 0.00 0.00 0.00 2.29
4493 4918 3.605634 CCATTCCATACCACGTCTGAAA 58.394 45.455 0.00 0.00 0.00 2.69
4494 4919 2.093181 CCCATTCCATACCACGTCTGAA 60.093 50.000 0.00 0.00 0.00 3.02
4495 4920 1.484653 CCCATTCCATACCACGTCTGA 59.515 52.381 0.00 0.00 0.00 3.27
4496 4921 1.484653 TCCCATTCCATACCACGTCTG 59.515 52.381 0.00 0.00 0.00 3.51
4497 4922 1.874129 TCCCATTCCATACCACGTCT 58.126 50.000 0.00 0.00 0.00 4.18
4498 4923 2.494059 CATCCCATTCCATACCACGTC 58.506 52.381 0.00 0.00 0.00 4.34
4499 4924 1.142870 CCATCCCATTCCATACCACGT 59.857 52.381 0.00 0.00 0.00 4.49
4500 4925 1.419762 TCCATCCCATTCCATACCACG 59.580 52.381 0.00 0.00 0.00 4.94
4501 4926 2.815589 GCTCCATCCCATTCCATACCAC 60.816 54.545 0.00 0.00 0.00 4.16
4502 4927 1.425066 GCTCCATCCCATTCCATACCA 59.575 52.381 0.00 0.00 0.00 3.25
4503 4928 1.425066 TGCTCCATCCCATTCCATACC 59.575 52.381 0.00 0.00 0.00 2.73
4504 4929 2.107204 ACTGCTCCATCCCATTCCATAC 59.893 50.000 0.00 0.00 0.00 2.39
4505 4930 2.421725 ACTGCTCCATCCCATTCCATA 58.578 47.619 0.00 0.00 0.00 2.74
4506 4931 1.229131 ACTGCTCCATCCCATTCCAT 58.771 50.000 0.00 0.00 0.00 3.41
4507 4932 1.490490 GTACTGCTCCATCCCATTCCA 59.510 52.381 0.00 0.00 0.00 3.53
4508 4933 1.771255 AGTACTGCTCCATCCCATTCC 59.229 52.381 0.00 0.00 0.00 3.01
4509 4934 4.899352 ATAGTACTGCTCCATCCCATTC 57.101 45.455 5.39 0.00 0.00 2.67
4510 4935 4.202503 CCAATAGTACTGCTCCATCCCATT 60.203 45.833 5.39 0.00 0.00 3.16
4511 4936 3.328931 CCAATAGTACTGCTCCATCCCAT 59.671 47.826 5.39 0.00 0.00 4.00
4512 4937 2.705658 CCAATAGTACTGCTCCATCCCA 59.294 50.000 5.39 0.00 0.00 4.37
4513 4938 2.039084 CCCAATAGTACTGCTCCATCCC 59.961 54.545 5.39 0.00 0.00 3.85
4514 4939 2.706190 ACCCAATAGTACTGCTCCATCC 59.294 50.000 5.39 0.00 0.00 3.51
4515 4940 4.833380 TCTACCCAATAGTACTGCTCCATC 59.167 45.833 5.39 0.00 32.13 3.51
4516 4941 4.816126 TCTACCCAATAGTACTGCTCCAT 58.184 43.478 5.39 0.00 32.13 3.41
4517 4942 4.215908 CTCTACCCAATAGTACTGCTCCA 58.784 47.826 5.39 0.00 32.13 3.86
4518 4943 3.006003 GCTCTACCCAATAGTACTGCTCC 59.994 52.174 5.39 0.00 32.13 4.70
4519 4944 3.892588 AGCTCTACCCAATAGTACTGCTC 59.107 47.826 5.39 0.00 32.13 4.26
4520 4945 3.639094 CAGCTCTACCCAATAGTACTGCT 59.361 47.826 5.39 0.00 32.20 4.24
4521 4946 3.385111 ACAGCTCTACCCAATAGTACTGC 59.615 47.826 5.39 0.00 37.92 4.40
4522 4947 4.402793 ACACAGCTCTACCCAATAGTACTG 59.597 45.833 5.39 0.00 39.15 2.74
4523 4948 4.402793 CACACAGCTCTACCCAATAGTACT 59.597 45.833 0.00 0.00 32.13 2.73
4524 4949 4.441634 CCACACAGCTCTACCCAATAGTAC 60.442 50.000 0.00 0.00 32.13 2.73
4525 4950 3.704566 CCACACAGCTCTACCCAATAGTA 59.295 47.826 0.00 0.00 32.13 1.82
4526 4951 2.501723 CCACACAGCTCTACCCAATAGT 59.498 50.000 0.00 0.00 32.13 2.12
4527 4952 2.743183 GCCACACAGCTCTACCCAATAG 60.743 54.545 0.00 0.00 0.00 1.73
4528 4953 1.209504 GCCACACAGCTCTACCCAATA 59.790 52.381 0.00 0.00 0.00 1.90
4529 4954 0.035056 GCCACACAGCTCTACCCAAT 60.035 55.000 0.00 0.00 0.00 3.16
4530 4955 1.127567 AGCCACACAGCTCTACCCAA 61.128 55.000 0.00 0.00 39.48 4.12
4531 4956 1.536418 AGCCACACAGCTCTACCCA 60.536 57.895 0.00 0.00 39.48 4.51
4532 4957 1.078848 CAGCCACACAGCTCTACCC 60.079 63.158 0.00 0.00 42.61 3.69
4533 4958 0.321671 TTCAGCCACACAGCTCTACC 59.678 55.000 0.00 0.00 42.61 3.18
4534 4959 2.169832 TTTCAGCCACACAGCTCTAC 57.830 50.000 0.00 0.00 42.61 2.59
4535 4960 2.928801 TTTTCAGCCACACAGCTCTA 57.071 45.000 0.00 0.00 42.61 2.43
4536 4961 2.283145 ATTTTCAGCCACACAGCTCT 57.717 45.000 0.00 0.00 42.61 4.09
4537 4962 4.082571 ACATAATTTTCAGCCACACAGCTC 60.083 41.667 0.00 0.00 42.61 4.09
4538 4963 3.828451 ACATAATTTTCAGCCACACAGCT 59.172 39.130 0.00 0.00 46.45 4.24
4539 4964 3.922240 CACATAATTTTCAGCCACACAGC 59.078 43.478 0.00 0.00 0.00 4.40
4540 4965 5.125100 ACACATAATTTTCAGCCACACAG 57.875 39.130 0.00 0.00 0.00 3.66
4541 4966 5.528043 AACACATAATTTTCAGCCACACA 57.472 34.783 0.00 0.00 0.00 3.72
4542 4967 6.531240 CCATAACACATAATTTTCAGCCACAC 59.469 38.462 0.00 0.00 0.00 3.82
4543 4968 6.210385 ACCATAACACATAATTTTCAGCCACA 59.790 34.615 0.00 0.00 0.00 4.17
4544 4969 6.531240 CACCATAACACATAATTTTCAGCCAC 59.469 38.462 0.00 0.00 0.00 5.01
4545 4970 6.210385 ACACCATAACACATAATTTTCAGCCA 59.790 34.615 0.00 0.00 0.00 4.75
4546 4971 6.630071 ACACCATAACACATAATTTTCAGCC 58.370 36.000 0.00 0.00 0.00 4.85
4587 5012 5.232463 AGTTCATGCTGCCAAAACAATAAG 58.768 37.500 0.00 0.00 0.00 1.73
4619 5044 9.982291 GAGCATTTCGTTATTGAGTTTATACAA 57.018 29.630 0.00 0.00 0.00 2.41
4621 5046 9.982291 TTGAGCATTTCGTTATTGAGTTTATAC 57.018 29.630 0.00 0.00 0.00 1.47
4623 5048 9.906660 TTTTGAGCATTTCGTTATTGAGTTTAT 57.093 25.926 0.00 0.00 0.00 1.40
4625 5050 8.134895 TCTTTTGAGCATTTCGTTATTGAGTTT 58.865 29.630 0.00 0.00 0.00 2.66
4626 5051 7.648142 TCTTTTGAGCATTTCGTTATTGAGTT 58.352 30.769 0.00 0.00 0.00 3.01
4627 5052 7.202016 TCTTTTGAGCATTTCGTTATTGAGT 57.798 32.000 0.00 0.00 0.00 3.41
4628 5053 7.964559 TCATCTTTTGAGCATTTCGTTATTGAG 59.035 33.333 0.00 0.00 0.00 3.02
4629 5054 7.815641 TCATCTTTTGAGCATTTCGTTATTGA 58.184 30.769 0.00 0.00 0.00 2.57
4630 5055 8.529102 CATCATCTTTTGAGCATTTCGTTATTG 58.471 33.333 0.00 0.00 37.89 1.90
4631 5056 8.461222 TCATCATCTTTTGAGCATTTCGTTATT 58.539 29.630 0.00 0.00 37.89 1.40
4632 5057 7.988737 TCATCATCTTTTGAGCATTTCGTTAT 58.011 30.769 0.00 0.00 37.89 1.89
4633 5058 7.376435 TCATCATCTTTTGAGCATTTCGTTA 57.624 32.000 0.00 0.00 37.89 3.18
4634 5059 6.258230 TCATCATCTTTTGAGCATTTCGTT 57.742 33.333 0.00 0.00 37.89 3.85
4635 5060 5.885230 TCATCATCTTTTGAGCATTTCGT 57.115 34.783 0.00 0.00 37.89 3.85
4636 5061 6.320171 AGTTCATCATCTTTTGAGCATTTCG 58.680 36.000 0.00 0.00 37.89 3.46
4637 5062 8.457261 ACTAGTTCATCATCTTTTGAGCATTTC 58.543 33.333 0.00 0.00 37.89 2.17
4638 5063 8.345724 ACTAGTTCATCATCTTTTGAGCATTT 57.654 30.769 0.00 0.00 37.89 2.32
4639 5064 7.934855 ACTAGTTCATCATCTTTTGAGCATT 57.065 32.000 0.00 0.00 37.89 3.56
4640 5065 7.609146 TGAACTAGTTCATCATCTTTTGAGCAT 59.391 33.333 30.07 0.00 43.90 3.79
4641 5066 6.936335 TGAACTAGTTCATCATCTTTTGAGCA 59.064 34.615 30.07 6.34 43.90 4.26
4642 5067 7.369803 TGAACTAGTTCATCATCTTTTGAGC 57.630 36.000 30.07 3.83 43.90 4.26
4656 5081 4.229876 GTTTTGGCAGCATGAACTAGTTC 58.770 43.478 25.73 25.73 39.69 3.01
4657 5082 3.636300 TGTTTTGGCAGCATGAACTAGTT 59.364 39.130 8.13 8.13 39.69 2.24
4658 5083 3.221771 TGTTTTGGCAGCATGAACTAGT 58.778 40.909 0.00 0.00 39.69 2.57
4659 5084 3.921119 TGTTTTGGCAGCATGAACTAG 57.079 42.857 0.00 0.00 39.69 2.57
4660 5085 4.870123 ATTGTTTTGGCAGCATGAACTA 57.130 36.364 0.00 0.00 39.69 2.24
4661 5086 3.756933 ATTGTTTTGGCAGCATGAACT 57.243 38.095 0.00 0.00 39.69 3.01
4662 5087 5.466393 AGTTTATTGTTTTGGCAGCATGAAC 59.534 36.000 0.00 0.00 39.69 3.18
4663 5088 5.466058 CAGTTTATTGTTTTGGCAGCATGAA 59.534 36.000 0.00 0.00 39.69 2.57
4664 5089 4.989797 CAGTTTATTGTTTTGGCAGCATGA 59.010 37.500 0.00 0.00 39.69 3.07
4665 5090 4.377635 GCAGTTTATTGTTTTGGCAGCATG 60.378 41.667 0.00 0.00 40.87 4.06
4666 5091 3.747529 GCAGTTTATTGTTTTGGCAGCAT 59.252 39.130 0.00 0.00 0.00 3.79
4667 5092 3.129871 GCAGTTTATTGTTTTGGCAGCA 58.870 40.909 0.00 0.00 0.00 4.41
4668 5093 3.184986 CAGCAGTTTATTGTTTTGGCAGC 59.815 43.478 0.00 0.00 0.00 5.25
4669 5094 3.184986 GCAGCAGTTTATTGTTTTGGCAG 59.815 43.478 0.00 0.00 0.00 4.85
4670 5095 3.129871 GCAGCAGTTTATTGTTTTGGCA 58.870 40.909 0.00 0.00 0.00 4.92
4671 5096 3.129871 TGCAGCAGTTTATTGTTTTGGC 58.870 40.909 0.00 0.00 0.00 4.52
4672 5097 3.742369 CCTGCAGCAGTTTATTGTTTTGG 59.258 43.478 21.26 0.00 0.00 3.28
4673 5098 3.184986 GCCTGCAGCAGTTTATTGTTTTG 59.815 43.478 21.26 2.27 42.97 2.44
4674 5099 3.392882 GCCTGCAGCAGTTTATTGTTTT 58.607 40.909 21.26 0.00 42.97 2.43
4699 5124 8.167392 TGTCCCATTTCTCATTACTTTCCTAAA 58.833 33.333 0.00 0.00 0.00 1.85
4820 5245 2.863137 GCGCATTTTTGGAAGTCACAAA 59.137 40.909 0.30 0.00 36.15 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.