Multiple sequence alignment - TraesCS1B01G205800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G205800 chr1B 100.000 5697 0 0 1 5697 371137841 371143537 0.000000e+00 10521.0
1 TraesCS1B01G205800 chr1B 87.535 361 27 10 5085 5433 622820811 622821165 8.890000e-108 401.0
2 TraesCS1B01G205800 chr1B 91.558 154 12 1 5544 5697 554703159 554703311 1.610000e-50 211.0
3 TraesCS1B01G205800 chr1B 90.625 96 8 1 2443 2537 470294699 470294794 5.990000e-25 126.0
4 TraesCS1B01G205800 chr1B 90.625 96 8 1 2443 2537 550545412 550545507 5.990000e-25 126.0
5 TraesCS1B01G205800 chr1D 94.365 1739 44 23 3347 5043 272190327 272192053 0.000000e+00 2619.0
6 TraesCS1B01G205800 chr1D 90.086 1856 92 32 13 1819 272186956 272188768 0.000000e+00 2324.0
7 TraesCS1B01G205800 chr1D 86.449 642 37 12 1815 2441 272188845 272189451 0.000000e+00 658.0
8 TraesCS1B01G205800 chr1D 90.260 154 14 1 5544 5697 351953050 351952898 3.480000e-47 200.0
9 TraesCS1B01G205800 chr1D 91.111 90 7 1 2449 2537 193424796 193424707 2.790000e-23 121.0
10 TraesCS1B01G205800 chr1A 94.358 1737 45 15 3347 5043 344292991 344294714 0.000000e+00 2615.0
11 TraesCS1B01G205800 chr1A 91.149 1740 92 25 1 1705 344289331 344291043 0.000000e+00 2303.0
12 TraesCS1B01G205800 chr1A 84.462 650 36 14 1815 2441 344291492 344292099 1.060000e-161 580.0
13 TraesCS1B01G205800 chr1A 88.889 378 31 7 2897 3266 344292619 344292993 6.730000e-124 455.0
14 TraesCS1B01G205800 chr1A 81.853 518 48 21 5072 5544 84055303 84054787 1.490000e-105 394.0
15 TraesCS1B01G205800 chr1A 81.911 492 62 14 5077 5544 575649404 575648916 1.920000e-104 390.0
16 TraesCS1B01G205800 chr1A 87.383 214 17 5 2685 2896 344292359 344292564 2.650000e-58 237.0
17 TraesCS1B01G205800 chr1A 94.215 121 4 2 1700 1819 344291297 344291415 1.260000e-41 182.0
18 TraesCS1B01G205800 chr1A 95.000 100 3 2 3265 3362 560889211 560889112 7.640000e-34 156.0
19 TraesCS1B01G205800 chr1A 94.624 93 4 1 2446 2537 44477749 44477657 5.950000e-30 143.0
20 TraesCS1B01G205800 chr1A 91.489 94 7 1 2445 2537 541136325 541136232 1.670000e-25 128.0
21 TraesCS1B01G205800 chr1A 94.805 77 4 0 2445 2521 75247465 75247389 2.790000e-23 121.0
22 TraesCS1B01G205800 chr1A 90.323 93 8 1 2446 2537 514318171 514318263 2.790000e-23 121.0
23 TraesCS1B01G205800 chr1A 84.043 94 12 3 2446 2537 137413460 137413368 2.830000e-13 87.9
24 TraesCS1B01G205800 chr5A 89.115 836 67 13 868 1694 49741165 49740345 0.000000e+00 1018.0
25 TraesCS1B01G205800 chr5A 87.904 835 81 11 868 1694 49851327 49850505 0.000000e+00 965.0
26 TraesCS1B01G205800 chr5A 88.692 734 62 14 868 1593 49741898 49741178 0.000000e+00 876.0
27 TraesCS1B01G205800 chr5A 100.000 90 0 0 3262 3351 639210570 639210481 3.530000e-37 167.0
28 TraesCS1B01G205800 chr5A 95.960 99 3 1 3255 3352 580273676 580273578 5.910000e-35 159.0
29 TraesCS1B01G205800 chr7A 85.051 495 40 17 5077 5538 620363976 620364469 1.860000e-129 473.0
30 TraesCS1B01G205800 chr7A 82.812 512 43 23 5073 5540 579881627 579882137 3.180000e-112 416.0
31 TraesCS1B01G205800 chr7A 98.958 96 0 1 3254 3349 216787913 216788007 2.730000e-38 171.0
32 TraesCS1B01G205800 chr7A 92.553 94 6 1 2445 2537 645062688 645062781 3.580000e-27 134.0
33 TraesCS1B01G205800 chr7B 84.872 509 31 16 5077 5541 488389607 488389101 6.680000e-129 472.0
34 TraesCS1B01G205800 chr7B 83.383 337 42 7 5217 5540 739964267 739963932 3.340000e-77 300.0
35 TraesCS1B01G205800 chr7B 98.901 91 1 0 3264 3354 107564800 107564710 4.570000e-36 163.0
36 TraesCS1B01G205800 chr7B 94.737 95 4 1 2444 2537 455019597 455019503 4.600000e-31 147.0
37 TraesCS1B01G205800 chr7B 92.708 96 6 1 2443 2537 119745785 119745880 2.770000e-28 137.0
38 TraesCS1B01G205800 chr7B 93.548 93 5 1 2446 2537 672661935 672661843 2.770000e-28 137.0
39 TraesCS1B01G205800 chr4D 84.825 514 25 16 5078 5539 202238965 202238453 8.640000e-128 468.0
40 TraesCS1B01G205800 chr4D 83.466 502 46 15 5077 5544 495899618 495900116 3.150000e-117 433.0
41 TraesCS1B01G205800 chr4D 90.260 154 14 1 5544 5697 202238553 202238401 3.480000e-47 200.0
42 TraesCS1B01G205800 chrUn 84.221 507 37 20 5077 5541 42253357 42252852 2.420000e-123 453.0
43 TraesCS1B01G205800 chrUn 83.897 503 42 21 5076 5540 85387407 85386906 1.460000e-120 444.0
44 TraesCS1B01G205800 chrUn 79.245 371 51 21 5188 5539 349853860 349853497 9.540000e-58 235.0
45 TraesCS1B01G205800 chrUn 93.548 62 2 1 2465 2526 108955758 108955817 2.190000e-14 91.6
46 TraesCS1B01G205800 chr3B 83.433 501 36 20 5077 5531 753750291 753749792 6.820000e-114 422.0
47 TraesCS1B01G205800 chr3B 83.799 358 42 11 5197 5540 821094072 821094427 5.500000e-85 326.0
48 TraesCS1B01G205800 chr3B 79.373 383 56 13 5188 5550 800213181 800212802 1.230000e-61 248.0
49 TraesCS1B01G205800 chr3B 90.909 154 13 1 5544 5697 492754369 492754521 7.480000e-49 206.0
50 TraesCS1B01G205800 chr3B 96.939 98 1 1 3264 3361 243091206 243091301 4.570000e-36 163.0
51 TraesCS1B01G205800 chr3B 93.750 96 5 1 2443 2537 217157042 217156947 5.950000e-30 143.0
52 TraesCS1B01G205800 chr3B 93.548 93 5 1 2446 2537 20099753 20099661 2.770000e-28 137.0
53 TraesCS1B01G205800 chr3A 81.712 514 48 20 5076 5544 374089514 374090026 2.490000e-103 387.0
54 TraesCS1B01G205800 chr3A 81.712 514 46 17 5077 5544 656113098 656112587 8.950000e-103 385.0
55 TraesCS1B01G205800 chr2B 81.911 492 57 17 5077 5538 159609551 159610040 2.490000e-103 387.0
56 TraesCS1B01G205800 chr2B 90.909 154 13 1 5544 5697 243100002 243100154 7.480000e-49 206.0
57 TraesCS1B01G205800 chr2A 81.712 514 47 21 5077 5544 7640764 7640252 8.950000e-103 385.0
58 TraesCS1B01G205800 chr2A 100.000 93 0 0 3257 3349 771303535 771303627 7.590000e-39 172.0
59 TraesCS1B01G205800 chr4A 81.553 515 46 23 5077 5544 552567475 552567987 4.170000e-101 379.0
60 TraesCS1B01G205800 chr4A 91.558 154 12 1 5544 5697 699937091 699936939 1.610000e-50 211.0
61 TraesCS1B01G205800 chr4A 98.913 92 1 0 3265 3356 418604529 418604438 1.270000e-36 165.0
62 TraesCS1B01G205800 chr4A 91.667 96 7 1 2443 2537 509711994 509712089 1.290000e-26 132.0
63 TraesCS1B01G205800 chr2D 83.784 444 27 17 5114 5514 490804448 490804007 4.170000e-101 379.0
64 TraesCS1B01G205800 chr2D 90.260 154 14 1 5544 5697 549022418 549022570 3.480000e-47 200.0
65 TraesCS1B01G205800 chr4B 80.597 536 40 30 5073 5544 416119311 416118776 7.020000e-94 355.0
66 TraesCS1B01G205800 chr4B 80.381 367 58 11 5188 5544 664399597 664399959 3.380000e-67 267.0
67 TraesCS1B01G205800 chr4B 90.260 154 14 1 5544 5697 45880759 45880607 3.480000e-47 200.0
68 TraesCS1B01G205800 chr4B 94.792 96 4 1 2443 2537 104439907 104440002 1.280000e-31 148.0
69 TraesCS1B01G205800 chr3D 84.358 358 39 12 5197 5540 609933408 609933762 9.150000e-88 335.0
70 TraesCS1B01G205800 chr3D 93.750 96 5 1 2443 2537 334163643 334163548 5.950000e-30 143.0
71 TraesCS1B01G205800 chr7D 77.800 491 75 22 5085 5545 1533258 1532772 7.270000e-69 272.0
72 TraesCS1B01G205800 chr7D 100.000 89 0 0 3262 3350 69811213 69811301 1.270000e-36 165.0
73 TraesCS1B01G205800 chr5B 90.850 153 13 1 5545 5697 6670540 6670389 2.690000e-48 204.0
74 TraesCS1B01G205800 chr5B 93.548 93 5 1 2446 2537 526673267 526673175 2.770000e-28 137.0
75 TraesCS1B01G205800 chr5B 90.110 91 9 0 2444 2534 271113775 271113865 1.000000e-22 119.0
76 TraesCS1B01G205800 chr6D 93.617 94 5 1 2445 2537 446463624 446463717 7.700000e-29 139.0
77 TraesCS1B01G205800 chr5D 87.368 95 11 1 2443 2536 493831129 493831035 2.170000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G205800 chr1B 371137841 371143537 5696 False 10521 10521 100.0000 1 5697 1 chr1B.!!$F1 5696
1 TraesCS1B01G205800 chr1D 272186956 272192053 5097 False 1867 2619 90.3000 13 5043 3 chr1D.!!$F1 5030
2 TraesCS1B01G205800 chr1A 344289331 344294714 5383 False 1062 2615 90.0760 1 5043 6 chr1A.!!$F2 5042
3 TraesCS1B01G205800 chr1A 84054787 84055303 516 True 394 394 81.8530 5072 5544 1 chr1A.!!$R3 472
4 TraesCS1B01G205800 chr5A 49850505 49851327 822 True 965 965 87.9040 868 1694 1 chr5A.!!$R1 826
5 TraesCS1B01G205800 chr5A 49740345 49741898 1553 True 947 1018 88.9035 868 1694 2 chr5A.!!$R4 826
6 TraesCS1B01G205800 chr7A 579881627 579882137 510 False 416 416 82.8120 5073 5540 1 chr7A.!!$F2 467
7 TraesCS1B01G205800 chr7B 488389101 488389607 506 True 472 472 84.8720 5077 5541 1 chr7B.!!$R3 464
8 TraesCS1B01G205800 chr4D 202238401 202238965 564 True 334 468 87.5425 5078 5697 2 chr4D.!!$R1 619
9 TraesCS1B01G205800 chrUn 42252852 42253357 505 True 453 453 84.2210 5077 5541 1 chrUn.!!$R1 464
10 TraesCS1B01G205800 chrUn 85386906 85387407 501 True 444 444 83.8970 5076 5540 1 chrUn.!!$R2 464
11 TraesCS1B01G205800 chr3A 374089514 374090026 512 False 387 387 81.7120 5076 5544 1 chr3A.!!$F1 468
12 TraesCS1B01G205800 chr3A 656112587 656113098 511 True 385 385 81.7120 5077 5544 1 chr3A.!!$R1 467
13 TraesCS1B01G205800 chr2A 7640252 7640764 512 True 385 385 81.7120 5077 5544 1 chr2A.!!$R1 467
14 TraesCS1B01G205800 chr4A 552567475 552567987 512 False 379 379 81.5530 5077 5544 1 chr4A.!!$F2 467
15 TraesCS1B01G205800 chr4B 416118776 416119311 535 True 355 355 80.5970 5073 5544 1 chr4B.!!$R2 471

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
53 54 0.462047 AAGGCCGATGTTGATCCGTC 60.462 55.0 0.00 0.0 0.00 4.79 F
517 541 0.698238 TACTGTGCAAGCCCCAGATT 59.302 50.0 13.56 0.0 0.00 2.40 F
688 727 0.818040 AGCGGTGTGTGGAGTTTTCC 60.818 55.0 0.00 0.0 44.31 3.13 F
2458 2883 0.107848 GCCCGGTGCTACAGTGTAAT 60.108 55.0 4.21 0.0 36.87 1.89 F
3270 3877 0.394352 CCCCACTGCATTGTACTCCC 60.394 60.0 3.14 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1615 1676 0.681564 AAACAACACCGGTCCAGCAA 60.682 50.000 2.59 0.0 0.00 3.91 R
1617 1678 0.818040 AGAAACAACACCGGTCCAGC 60.818 55.000 2.59 0.0 0.00 4.85 R
2538 2963 1.065199 GCATCTGGATCTGTCCCAACA 60.065 52.381 0.00 0.0 44.41 3.33 R
4336 4946 0.689055 TCTGGTTGCTGCTGATGTCT 59.311 50.000 0.00 0.0 0.00 3.41 R
5061 5711 2.252714 GAGTGAACTCTGGACCCTTCT 58.747 52.381 3.13 0.0 39.81 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 0.462047 AAGGCCGATGTTGATCCGTC 60.462 55.000 0.00 0.00 0.00 4.79
113 114 3.060602 GGACCGATTTGATCTCGATTCC 58.939 50.000 4.55 6.19 38.38 3.01
207 208 3.774702 GCCGCTGTCGTTTCGTCC 61.775 66.667 0.00 0.00 0.00 4.79
364 378 1.134128 TCTGTTCTTGGCTTGCAGTGA 60.134 47.619 0.00 0.00 0.00 3.41
365 379 1.884579 CTGTTCTTGGCTTGCAGTGAT 59.115 47.619 0.00 0.00 0.00 3.06
366 380 1.881973 TGTTCTTGGCTTGCAGTGATC 59.118 47.619 0.00 0.00 0.00 2.92
391 406 3.251004 CGGTGCTCTTGATTAATTAGCCC 59.749 47.826 9.27 8.94 32.14 5.19
394 409 3.463329 TGCTCTTGATTAATTAGCCCCCT 59.537 43.478 9.27 0.00 32.14 4.79
395 410 3.823304 GCTCTTGATTAATTAGCCCCCTG 59.177 47.826 0.00 0.00 0.00 4.45
396 411 3.823304 CTCTTGATTAATTAGCCCCCTGC 59.177 47.826 0.00 0.00 41.71 4.85
397 412 3.204158 TCTTGATTAATTAGCCCCCTGCA 59.796 43.478 0.00 0.00 44.83 4.41
398 413 3.901570 TGATTAATTAGCCCCCTGCAT 57.098 42.857 0.00 0.00 44.83 3.96
399 414 3.499338 TGATTAATTAGCCCCCTGCATG 58.501 45.455 0.00 0.00 44.83 4.06
400 415 3.117169 TGATTAATTAGCCCCCTGCATGT 60.117 43.478 0.00 0.00 44.83 3.21
401 416 2.656947 TAATTAGCCCCCTGCATGTC 57.343 50.000 0.00 0.00 44.83 3.06
517 541 0.698238 TACTGTGCAAGCCCCAGATT 59.302 50.000 13.56 0.00 0.00 2.40
534 558 6.442952 CCCAGATTAACTAGATGAAGAGACG 58.557 44.000 0.00 0.00 0.00 4.18
602 626 8.043113 AGTCAAACTCATGATCAGTTGCTATAA 58.957 33.333 0.09 0.00 34.21 0.98
666 705 6.156519 TGCTACTCTATGTAATAATGTGGCG 58.843 40.000 0.00 0.00 39.53 5.69
688 727 0.818040 AGCGGTGTGTGGAGTTTTCC 60.818 55.000 0.00 0.00 44.31 3.13
736 778 0.884259 CACAGTGTGGTGCGATTGGA 60.884 55.000 15.86 0.00 31.10 3.53
760 802 1.541233 GCCATGTTCCAGATCCTACGG 60.541 57.143 0.00 0.00 0.00 4.02
831 874 3.051392 GCCGCCTACGCATTTTGCT 62.051 57.895 0.00 0.00 42.25 3.91
897 940 1.270839 TGAGGAGACTTTTCTTGGCGG 60.271 52.381 0.00 0.00 44.43 6.13
917 960 1.227556 CCTCCCCGTATTTCCGCTG 60.228 63.158 0.00 0.00 0.00 5.18
1314 1371 1.600916 GAGGCGGTTCAAGGTGCTT 60.601 57.895 0.00 0.00 0.00 3.91
1682 1745 9.397280 TCCGTGTTCATATTAATTGTTGGAATA 57.603 29.630 0.00 0.00 0.00 1.75
1750 2073 0.649475 CATTACGCTGCACTGCTCTC 59.351 55.000 1.98 0.00 0.00 3.20
1857 2260 9.787435 TTCCTTTTCAGTAGTTTTCTGCTATTA 57.213 29.630 0.00 0.00 40.76 0.98
1858 2261 9.959721 TCCTTTTCAGTAGTTTTCTGCTATTAT 57.040 29.630 0.00 0.00 40.76 1.28
1892 2295 0.773644 CTGGAACTATGGGGGATGGG 59.226 60.000 0.00 0.00 0.00 4.00
1895 2298 1.309549 AACTATGGGGGATGGGCCA 60.310 57.895 9.61 9.61 38.95 5.36
1945 2361 9.860898 GTTGGTGATTCTTCAATTTTTAGCTAT 57.139 29.630 0.00 0.00 32.48 2.97
1967 2383 7.384932 GCTATTTGCTATTGTTTGTTTGGAGTT 59.615 33.333 0.00 0.00 38.95 3.01
1977 2393 6.929625 TGTTTGTTTGGAGTTGAATTCTTCA 58.070 32.000 7.05 0.00 38.04 3.02
1979 2395 5.168526 TGTTTGGAGTTGAATTCTTCACG 57.831 39.130 7.05 0.00 39.87 4.35
1994 2410 3.458118 TCTTCACGGGTTTCATATCCCAT 59.542 43.478 0.00 0.00 43.57 4.00
2025 2441 0.469917 GAGGATGAAAGCGATCCCCA 59.530 55.000 0.00 0.00 40.44 4.96
2096 2512 1.394618 TCACTCCCCGTTTTTGTTGG 58.605 50.000 0.00 0.00 0.00 3.77
2117 2533 7.564660 TGTTGGAATTTGCATTTAGGATCCTAT 59.435 33.333 22.30 6.76 0.00 2.57
2142 2558 3.947868 TCTTGAATGCAGAAGCTTAGCT 58.052 40.909 20.18 0.00 42.56 3.32
2143 2559 5.089970 TCTTGAATGCAGAAGCTTAGCTA 57.910 39.130 20.18 10.10 38.25 3.32
2144 2560 5.491070 TCTTGAATGCAGAAGCTTAGCTAA 58.509 37.500 20.18 5.94 38.25 3.09
2145 2561 5.352569 TCTTGAATGCAGAAGCTTAGCTAAC 59.647 40.000 20.18 5.17 38.25 2.34
2146 2562 4.578871 TGAATGCAGAAGCTTAGCTAACA 58.421 39.130 20.18 14.65 38.25 2.41
2147 2563 5.188434 TGAATGCAGAAGCTTAGCTAACAT 58.812 37.500 20.18 6.28 38.25 2.71
2148 2564 5.649395 TGAATGCAGAAGCTTAGCTAACATT 59.351 36.000 20.18 14.18 38.25 2.71
2149 2565 6.823182 TGAATGCAGAAGCTTAGCTAACATTA 59.177 34.615 20.18 3.21 38.25 1.90
2150 2566 6.857777 ATGCAGAAGCTTAGCTAACATTAG 57.142 37.500 20.18 0.00 38.25 1.73
2200 2616 3.243771 ACCTACAATAGATTCCTTCGGCG 60.244 47.826 0.00 0.00 0.00 6.46
2246 2662 9.181805 GTCAACTCTTTTGCCTAACTAATTTTC 57.818 33.333 0.00 0.00 0.00 2.29
2248 2664 9.185192 CAACTCTTTTGCCTAACTAATTTTCTG 57.815 33.333 0.00 0.00 0.00 3.02
2259 2675 8.507249 CCTAACTAATTTTCTGAAGGAACACAG 58.493 37.037 0.00 0.00 36.64 3.66
2287 2703 8.051901 GGTTATTGACCTACTGCAGTTTTATT 57.948 34.615 27.06 5.22 45.55 1.40
2329 2745 9.442047 AGGAGATGTACACAAAGAAAATTAGAG 57.558 33.333 0.00 0.00 0.00 2.43
2357 2773 7.471890 AGTTACATAACCAATCCTTTAACCCA 58.528 34.615 0.00 0.00 36.88 4.51
2360 2776 6.078664 ACATAACCAATCCTTTAACCCAACA 58.921 36.000 0.00 0.00 0.00 3.33
2376 2792 6.759497 ACCCAACATAAGTATTTCTCTTGC 57.241 37.500 0.00 0.00 0.00 4.01
2389 2805 3.577649 TCTCTTGCCTCTACGAAACAG 57.422 47.619 0.00 0.00 0.00 3.16
2392 2808 4.082895 TCTCTTGCCTCTACGAAACAGTAC 60.083 45.833 0.00 0.00 0.00 2.73
2394 2810 3.293311 TGCCTCTACGAAACAGTACAC 57.707 47.619 0.00 0.00 0.00 2.90
2395 2811 2.029649 TGCCTCTACGAAACAGTACACC 60.030 50.000 0.00 0.00 0.00 4.16
2415 2840 4.637534 CACCATTTCCTCCTTGATAGTGTG 59.362 45.833 0.00 0.00 0.00 3.82
2432 2857 3.452264 AGTGTGTCTGCAGCAATATAGGA 59.548 43.478 9.47 0.00 0.00 2.94
2441 2866 1.359130 AGCAATATAGGATTGGGGGCC 59.641 52.381 0.00 0.00 0.00 5.80
2443 2868 0.999712 AATATAGGATTGGGGGCCCG 59.000 55.000 17.79 0.00 39.42 6.13
2444 2869 0.919289 ATATAGGATTGGGGGCCCGG 60.919 60.000 17.79 0.00 39.42 5.73
2445 2870 2.349630 TATAGGATTGGGGGCCCGGT 62.350 60.000 17.79 4.29 39.42 5.28
2454 2879 4.778143 GGGCCCGGTGCTACAGTG 62.778 72.222 5.69 0.00 40.92 3.66
2458 2883 0.107848 GCCCGGTGCTACAGTGTAAT 60.108 55.000 4.21 0.00 36.87 1.89
2459 2884 1.935933 CCCGGTGCTACAGTGTAATC 58.064 55.000 4.21 0.20 0.00 1.75
2460 2885 1.556564 CCGGTGCTACAGTGTAATCG 58.443 55.000 4.21 2.63 0.00 3.34
2461 2886 1.135199 CCGGTGCTACAGTGTAATCGT 60.135 52.381 4.21 0.00 0.00 3.73
2462 2887 2.097954 CCGGTGCTACAGTGTAATCGTA 59.902 50.000 4.21 0.00 0.00 3.43
2463 2888 3.103738 CGGTGCTACAGTGTAATCGTAC 58.896 50.000 4.21 2.92 0.00 3.67
2464 2889 3.181503 CGGTGCTACAGTGTAATCGTACT 60.182 47.826 4.21 0.00 0.00 2.73
2476 2901 9.135843 CAGTGTAATCGTACTGTAAAATGAAGA 57.864 33.333 0.00 0.00 39.48 2.87
2477 2902 9.701098 AGTGTAATCGTACTGTAAAATGAAGAA 57.299 29.630 0.00 0.00 0.00 2.52
2478 2903 9.953825 GTGTAATCGTACTGTAAAATGAAGAAG 57.046 33.333 0.00 0.00 0.00 2.85
2479 2904 9.146984 TGTAATCGTACTGTAAAATGAAGAAGG 57.853 33.333 0.00 0.00 0.00 3.46
2480 2905 9.362539 GTAATCGTACTGTAAAATGAAGAAGGA 57.637 33.333 0.00 0.00 0.00 3.36
2481 2906 8.842358 AATCGTACTGTAAAATGAAGAAGGAA 57.158 30.769 0.00 0.00 0.00 3.36
2482 2907 9.449719 AATCGTACTGTAAAATGAAGAAGGAAT 57.550 29.630 0.00 0.00 0.00 3.01
2483 2908 8.251750 TCGTACTGTAAAATGAAGAAGGAATG 57.748 34.615 0.00 0.00 0.00 2.67
2484 2909 7.876068 TCGTACTGTAAAATGAAGAAGGAATGT 59.124 33.333 0.00 0.00 0.00 2.71
2485 2910 8.504005 CGTACTGTAAAATGAAGAAGGAATGTT 58.496 33.333 0.00 0.00 0.00 2.71
2488 2913 9.793259 ACTGTAAAATGAAGAAGGAATGTTAGA 57.207 29.630 0.00 0.00 0.00 2.10
2492 2917 7.602517 AAATGAAGAAGGAATGTTAGAGACG 57.397 36.000 0.00 0.00 0.00 4.18
2493 2918 5.723672 TGAAGAAGGAATGTTAGAGACGT 57.276 39.130 0.00 0.00 0.00 4.34
2494 2919 6.097915 TGAAGAAGGAATGTTAGAGACGTT 57.902 37.500 0.00 0.00 40.15 3.99
2495 2920 6.522054 TGAAGAAGGAATGTTAGAGACGTTT 58.478 36.000 0.00 0.00 37.60 3.60
2496 2921 7.663827 TGAAGAAGGAATGTTAGAGACGTTTA 58.336 34.615 0.00 0.00 37.60 2.01
2497 2922 7.813148 TGAAGAAGGAATGTTAGAGACGTTTAG 59.187 37.037 0.00 0.00 37.60 1.85
2498 2923 6.100668 AGAAGGAATGTTAGAGACGTTTAGC 58.899 40.000 0.00 0.00 37.60 3.09
2499 2924 5.401531 AGGAATGTTAGAGACGTTTAGCA 57.598 39.130 0.00 0.00 37.60 3.49
2500 2925 5.411781 AGGAATGTTAGAGACGTTTAGCAG 58.588 41.667 0.00 0.00 37.60 4.24
2501 2926 5.185249 AGGAATGTTAGAGACGTTTAGCAGA 59.815 40.000 0.00 0.00 37.60 4.26
2502 2927 6.043411 GGAATGTTAGAGACGTTTAGCAGAT 58.957 40.000 0.00 0.00 37.60 2.90
2503 2928 6.535508 GGAATGTTAGAGACGTTTAGCAGATT 59.464 38.462 0.00 0.00 37.60 2.40
2504 2929 7.705325 GGAATGTTAGAGACGTTTAGCAGATTA 59.295 37.037 0.00 0.00 37.60 1.75
2505 2930 9.250624 GAATGTTAGAGACGTTTAGCAGATTAT 57.749 33.333 0.00 0.00 37.60 1.28
2506 2931 9.601217 AATGTTAGAGACGTTTAGCAGATTATT 57.399 29.630 0.00 0.00 33.72 1.40
2507 2932 8.997621 TGTTAGAGACGTTTAGCAGATTATTT 57.002 30.769 0.00 0.00 0.00 1.40
2565 2990 1.129917 CAGATCCAGATGCTCCCTGT 58.870 55.000 0.00 0.00 0.00 4.00
2574 2999 4.818546 CCAGATGCTCCCTGTAACTAATTG 59.181 45.833 0.00 0.00 0.00 2.32
2584 3009 7.228590 TCCCTGTAACTAATTGTTTTGCTAGT 58.771 34.615 0.00 0.00 39.89 2.57
2621 3046 3.615155 ACTGACGATCATCTCTCTGTCA 58.385 45.455 0.00 0.00 35.31 3.58
2622 3047 4.013050 ACTGACGATCATCTCTCTGTCAA 58.987 43.478 0.00 0.00 36.08 3.18
2624 3049 5.180367 TGACGATCATCTCTCTGTCAATC 57.820 43.478 0.00 0.00 33.79 2.67
2626 3051 5.301298 TGACGATCATCTCTCTGTCAATCAT 59.699 40.000 0.00 0.00 33.79 2.45
2647 3085 2.227626 TGTTTCTTGTGTGTGTGTGTGG 59.772 45.455 0.00 0.00 0.00 4.17
2688 3133 0.912486 GGTGATAGCTGGACCCACTT 59.088 55.000 0.00 0.00 0.00 3.16
2695 3211 2.466846 AGCTGGACCCACTTTGTTTTT 58.533 42.857 0.00 0.00 0.00 1.94
2767 3285 3.768215 TGATATGAGCATGGCAAAAACCA 59.232 39.130 0.00 0.00 45.82 3.67
2775 3293 2.957491 TGGCAAAAACCAGTTGACTG 57.043 45.000 4.15 4.15 43.40 3.51
2806 3324 5.772393 ACCCATCTTGATAACACCACTTA 57.228 39.130 0.00 0.00 0.00 2.24
2826 3344 9.921637 CCACTTAAGCAGAAATACCATTAAAAA 57.078 29.630 1.29 0.00 0.00 1.94
2862 3380 8.450964 CACTACAATTACCACCAAAGTCTTATG 58.549 37.037 0.00 0.00 0.00 1.90
2870 3388 7.480760 ACCACCAAAGTCTTATGCATTTAAT 57.519 32.000 3.54 0.00 0.00 1.40
2919 3491 2.425102 CCCAACCAAACCAAGTCCCTTA 60.425 50.000 0.00 0.00 0.00 2.69
2938 3510 1.076632 CCTCTCTCACCCTACGCCT 60.077 63.158 0.00 0.00 0.00 5.52
2958 3530 3.131577 CCTACGGTTGTCCATAGCAGTAA 59.868 47.826 0.00 0.00 29.16 2.24
2964 3536 2.985896 TGTCCATAGCAGTAAAGCCAC 58.014 47.619 0.00 0.00 34.23 5.01
2969 3541 0.978151 TAGCAGTAAAGCCACGGGAA 59.022 50.000 0.00 0.00 34.23 3.97
2997 3569 2.267006 CGGATGTGGCTGCAGAGT 59.733 61.111 20.43 0.00 0.00 3.24
3007 3579 2.104792 TGGCTGCAGAGTAAGTTGAGTT 59.895 45.455 20.43 0.00 0.00 3.01
3010 3582 3.999663 GCTGCAGAGTAAGTTGAGTTGAT 59.000 43.478 20.43 0.00 0.00 2.57
3099 3677 4.508763 CGTAGGTTGAGAGATACCCCCTAT 60.509 50.000 0.00 0.00 34.90 2.57
3116 3694 5.012561 CCCCCTATTCATTCTCGAAGAAGAT 59.987 44.000 0.00 0.00 37.69 2.40
3117 3695 5.931146 CCCCTATTCATTCTCGAAGAAGATG 59.069 44.000 0.00 0.00 37.69 2.90
3133 3711 9.949377 CGAAGAAGATGATATCAACATTATTCG 57.051 33.333 25.75 25.75 33.32 3.34
3148 3726 7.985634 ACATTATTCGTATTGATTGCCAAAC 57.014 32.000 0.00 0.00 38.43 2.93
3165 3772 4.093556 GCCAAACAATCTAACGGAGAGAAG 59.906 45.833 0.00 0.00 37.70 2.85
3217 3824 6.707290 TCAGTTGGTATTTTGCTAGAGCTTA 58.293 36.000 2.72 0.00 42.66 3.09
3218 3825 6.818644 TCAGTTGGTATTTTGCTAGAGCTTAG 59.181 38.462 2.72 0.00 42.66 2.18
3255 3862 7.451731 AAGTCATAGATAGTCAATTTCCCCA 57.548 36.000 0.00 0.00 0.00 4.96
3256 3863 6.831976 AGTCATAGATAGTCAATTTCCCCAC 58.168 40.000 0.00 0.00 0.00 4.61
3257 3864 6.617371 AGTCATAGATAGTCAATTTCCCCACT 59.383 38.462 0.00 0.00 0.00 4.00
3258 3865 6.708054 GTCATAGATAGTCAATTTCCCCACTG 59.292 42.308 0.00 0.00 0.00 3.66
3259 3866 3.891049 AGATAGTCAATTTCCCCACTGC 58.109 45.455 0.00 0.00 0.00 4.40
3260 3867 3.266772 AGATAGTCAATTTCCCCACTGCA 59.733 43.478 0.00 0.00 0.00 4.41
3261 3868 2.610438 AGTCAATTTCCCCACTGCAT 57.390 45.000 0.00 0.00 0.00 3.96
3262 3869 2.893424 AGTCAATTTCCCCACTGCATT 58.107 42.857 0.00 0.00 0.00 3.56
3263 3870 2.564062 AGTCAATTTCCCCACTGCATTG 59.436 45.455 0.00 0.00 0.00 2.82
3264 3871 2.299867 GTCAATTTCCCCACTGCATTGT 59.700 45.455 3.14 0.00 0.00 2.71
3265 3872 3.509575 GTCAATTTCCCCACTGCATTGTA 59.490 43.478 3.14 0.00 0.00 2.41
3266 3873 3.509575 TCAATTTCCCCACTGCATTGTAC 59.490 43.478 3.14 0.00 0.00 2.90
3268 3875 2.489938 TTCCCCACTGCATTGTACTC 57.510 50.000 3.14 0.00 0.00 2.59
3269 3876 0.618458 TCCCCACTGCATTGTACTCC 59.382 55.000 3.14 0.00 0.00 3.85
3270 3877 0.394352 CCCCACTGCATTGTACTCCC 60.394 60.000 3.14 0.00 0.00 4.30
3271 3878 0.620556 CCCACTGCATTGTACTCCCT 59.379 55.000 3.14 0.00 0.00 4.20
3272 3879 1.407437 CCCACTGCATTGTACTCCCTC 60.407 57.143 3.14 0.00 0.00 4.30
3273 3880 1.407437 CCACTGCATTGTACTCCCTCC 60.407 57.143 3.14 0.00 0.00 4.30
3274 3881 0.537188 ACTGCATTGTACTCCCTCCG 59.463 55.000 0.00 0.00 0.00 4.63
3275 3882 0.537188 CTGCATTGTACTCCCTCCGT 59.463 55.000 0.00 0.00 0.00 4.69
3276 3883 1.754803 CTGCATTGTACTCCCTCCGTA 59.245 52.381 0.00 0.00 0.00 4.02
3277 3884 2.167693 CTGCATTGTACTCCCTCCGTAA 59.832 50.000 0.00 0.00 0.00 3.18
3278 3885 2.568062 TGCATTGTACTCCCTCCGTAAA 59.432 45.455 0.00 0.00 0.00 2.01
3279 3886 2.934553 GCATTGTACTCCCTCCGTAAAC 59.065 50.000 0.00 0.00 0.00 2.01
3280 3887 3.369157 GCATTGTACTCCCTCCGTAAACT 60.369 47.826 0.00 0.00 0.00 2.66
3281 3888 4.142093 GCATTGTACTCCCTCCGTAAACTA 60.142 45.833 0.00 0.00 0.00 2.24
3282 3889 5.625197 GCATTGTACTCCCTCCGTAAACTAA 60.625 44.000 0.00 0.00 0.00 2.24
3283 3890 6.579865 CATTGTACTCCCTCCGTAAACTAAT 58.420 40.000 0.00 0.00 0.00 1.73
3284 3891 7.685155 GCATTGTACTCCCTCCGTAAACTAATA 60.685 40.741 0.00 0.00 0.00 0.98
3285 3892 7.902920 TTGTACTCCCTCCGTAAACTAATAT 57.097 36.000 0.00 0.00 0.00 1.28
3286 3893 8.995027 TTGTACTCCCTCCGTAAACTAATATA 57.005 34.615 0.00 0.00 0.00 0.86
3287 3894 8.995027 TGTACTCCCTCCGTAAACTAATATAA 57.005 34.615 0.00 0.00 0.00 0.98
3288 3895 9.071276 TGTACTCCCTCCGTAAACTAATATAAG 57.929 37.037 0.00 0.00 0.00 1.73
3289 3896 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
3290 3897 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
3291 3898 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
3292 3899 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
3293 3900 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
3294 3901 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
3295 3902 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
3296 3903 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
3297 3904 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
3298 3905 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
3345 3952 9.710818 ACACTCTTATATTAGTTTACAGAGGGA 57.289 33.333 2.59 0.00 34.50 4.20
3347 3954 9.939424 ACTCTTATATTAGTTTACAGAGGGAGT 57.061 33.333 0.00 0.00 32.21 3.85
3396 4004 5.124036 AGTATAGGCCTAAACCAATGCAA 57.876 39.130 18.42 0.00 0.00 4.08
3476 4084 7.284489 AGGCAAGTAAAGATCAGTTTGTAACAA 59.716 33.333 0.00 0.00 0.00 2.83
3766 4376 6.808321 TCAACAGTTGGTAGCCTTAGATAT 57.192 37.500 13.52 0.00 0.00 1.63
3787 4397 5.733620 ATTTGACAAAGCTTGACATCCAT 57.266 34.783 0.00 0.00 35.43 3.41
3826 4436 2.173356 TCTGCCTGATACATTTGGGGAG 59.827 50.000 0.00 0.00 36.95 4.30
3882 4492 0.605589 CAGCTGAAGTCTCTTCCGGT 59.394 55.000 8.42 3.97 0.00 5.28
4069 4679 5.763204 TGTGGAACTTAGATTGGACTTCAAC 59.237 40.000 0.00 0.00 36.40 3.18
4252 4862 0.961019 TTTGCTTTGCCACTAGCCTG 59.039 50.000 0.00 0.00 42.71 4.85
4336 4946 5.946942 ATCTTGAGATGCTTGAGGAGTTA 57.053 39.130 0.00 0.00 32.68 2.24
4505 5115 9.843334 GTCGCTCTGCTATAAGTTAATAGTAAT 57.157 33.333 0.00 0.00 32.89 1.89
4767 5382 3.319122 GTCAGCAATGAAAGGAAGGTTGT 59.681 43.478 0.00 0.00 0.00 3.32
4769 5384 3.571401 CAGCAATGAAAGGAAGGTTGTCT 59.429 43.478 0.00 0.00 0.00 3.41
4780 5402 4.956075 AGGAAGGTTGTCTTTCATGTTTGT 59.044 37.500 0.00 0.00 35.50 2.83
4791 5413 9.739276 TGTCTTTCATGTTTGTATTCTTCCTAT 57.261 29.630 0.00 0.00 0.00 2.57
4796 5418 8.862325 TCATGTTTGTATTCTTCCTATGTTGT 57.138 30.769 0.00 0.00 0.00 3.32
4797 5419 8.729756 TCATGTTTGTATTCTTCCTATGTTGTG 58.270 33.333 0.00 0.00 0.00 3.33
4798 5420 8.729756 CATGTTTGTATTCTTCCTATGTTGTGA 58.270 33.333 0.00 0.00 0.00 3.58
4838 5461 7.797123 GTGTAGTTTTCTTGTAAAGGTTCATCG 59.203 37.037 0.00 0.00 46.24 3.84
4881 5530 5.184096 ACTCCACCTGTATTATGAGATAGCG 59.816 44.000 0.00 0.00 0.00 4.26
4945 5595 7.637229 TGTATGCGATCTGTCTTAAGTACTAC 58.363 38.462 1.63 0.00 0.00 2.73
4946 5596 6.945938 ATGCGATCTGTCTTAAGTACTACT 57.054 37.500 1.63 0.00 0.00 2.57
4947 5597 6.120378 TGCGATCTGTCTTAAGTACTACTG 57.880 41.667 1.63 0.00 0.00 2.74
4948 5598 5.646793 TGCGATCTGTCTTAAGTACTACTGT 59.353 40.000 1.63 0.00 0.00 3.55
4949 5599 6.820152 TGCGATCTGTCTTAAGTACTACTGTA 59.180 38.462 1.63 0.00 0.00 2.74
5024 5674 1.658596 GTACTGCATGATCGCGTCAAA 59.341 47.619 5.77 0.00 40.97 2.69
5034 5684 4.242475 TGATCGCGTCAAACTGTTATCTT 58.758 39.130 5.77 0.00 32.78 2.40
5043 5693 7.352739 CGTCAAACTGTTATCTTTAAGCTGTT 58.647 34.615 0.00 0.00 0.00 3.16
5044 5694 7.855904 CGTCAAACTGTTATCTTTAAGCTGTTT 59.144 33.333 0.00 0.00 0.00 2.83
5045 5695 9.170584 GTCAAACTGTTATCTTTAAGCTGTTTC 57.829 33.333 0.00 0.00 0.00 2.78
5046 5696 9.120538 TCAAACTGTTATCTTTAAGCTGTTTCT 57.879 29.630 0.00 0.00 0.00 2.52
5047 5697 9.387123 CAAACTGTTATCTTTAAGCTGTTTCTC 57.613 33.333 0.00 0.00 0.00 2.87
5048 5698 8.910351 AACTGTTATCTTTAAGCTGTTTCTCT 57.090 30.769 0.00 0.00 0.00 3.10
5049 5699 8.910351 ACTGTTATCTTTAAGCTGTTTCTCTT 57.090 30.769 0.00 0.00 0.00 2.85
5050 5700 9.343539 ACTGTTATCTTTAAGCTGTTTCTCTTT 57.656 29.630 0.00 0.00 0.00 2.52
5220 5890 9.896263 GTTATACCGAAAAACTGAATGGTTAAA 57.104 29.630 0.00 0.00 0.00 1.52
5308 5982 5.570262 TTCTTGTACACGAGTCAAATTCG 57.430 39.130 0.00 0.00 43.38 3.34
5309 5983 4.862350 TCTTGTACACGAGTCAAATTCGA 58.138 39.130 0.00 0.00 40.36 3.71
5310 5984 4.678287 TCTTGTACACGAGTCAAATTCGAC 59.322 41.667 0.00 0.00 40.36 4.20
5375 6063 6.017026 TGCTAAACACGTCCATAACAATCAAA 60.017 34.615 0.00 0.00 0.00 2.69
5381 6069 4.640201 ACGTCCATAACAATCAAAGGATGG 59.360 41.667 0.00 0.00 36.67 3.51
5383 6071 5.356751 CGTCCATAACAATCAAAGGATGGAA 59.643 40.000 3.08 0.00 43.29 3.53
5394 6082 1.683943 AGGATGGAACCATTCATGCG 58.316 50.000 13.76 0.00 36.92 4.73
5481 6209 8.646356 TGTTATTGATGTCATTTTCAAATTCGC 58.354 29.630 0.00 0.00 35.63 4.70
5482 6210 5.744047 TTGATGTCATTTTCAAATTCGCG 57.256 34.783 0.00 0.00 0.00 5.87
5483 6211 4.793071 TGATGTCATTTTCAAATTCGCGT 58.207 34.783 5.77 0.00 0.00 6.01
5484 6212 4.851014 TGATGTCATTTTCAAATTCGCGTC 59.149 37.500 5.77 0.00 0.00 5.19
5485 6213 4.216366 TGTCATTTTCAAATTCGCGTCA 57.784 36.364 5.77 0.00 0.00 4.35
5486 6214 4.602006 TGTCATTTTCAAATTCGCGTCAA 58.398 34.783 5.77 0.00 0.00 3.18
5487 6215 4.439449 TGTCATTTTCAAATTCGCGTCAAC 59.561 37.500 5.77 0.00 0.00 3.18
5488 6216 4.675114 GTCATTTTCAAATTCGCGTCAACT 59.325 37.500 5.77 0.00 0.00 3.16
5489 6217 5.173131 GTCATTTTCAAATTCGCGTCAACTT 59.827 36.000 5.77 0.00 0.00 2.66
5490 6218 5.746245 TCATTTTCAAATTCGCGTCAACTTT 59.254 32.000 5.77 0.00 0.00 2.66
5491 6219 5.368552 TTTTCAAATTCGCGTCAACTTTG 57.631 34.783 5.77 10.10 0.00 2.77
5492 6220 3.953874 TCAAATTCGCGTCAACTTTGA 57.046 38.095 5.77 12.13 34.43 2.69
5493 6221 4.481930 TCAAATTCGCGTCAACTTTGAT 57.518 36.364 5.77 0.00 39.73 2.57
5494 6222 4.854399 TCAAATTCGCGTCAACTTTGATT 58.146 34.783 5.77 0.00 39.73 2.57
5495 6223 5.991568 TCAAATTCGCGTCAACTTTGATTA 58.008 33.333 5.77 0.00 39.73 1.75
5496 6224 6.607689 TCAAATTCGCGTCAACTTTGATTAT 58.392 32.000 5.77 0.00 39.73 1.28
5497 6225 7.081349 TCAAATTCGCGTCAACTTTGATTATT 58.919 30.769 5.77 0.00 39.73 1.40
5498 6226 8.231161 TCAAATTCGCGTCAACTTTGATTATTA 58.769 29.630 5.77 0.00 39.73 0.98
5499 6227 9.009327 CAAATTCGCGTCAACTTTGATTATTAT 57.991 29.630 5.77 0.00 39.73 1.28
5500 6228 8.547091 AATTCGCGTCAACTTTGATTATTATG 57.453 30.769 5.77 0.00 39.73 1.90
5501 6229 6.895607 TCGCGTCAACTTTGATTATTATGA 57.104 33.333 5.77 0.00 39.73 2.15
5502 6230 7.477144 TCGCGTCAACTTTGATTATTATGAT 57.523 32.000 5.77 0.00 39.73 2.45
5503 6231 8.582433 TCGCGTCAACTTTGATTATTATGATA 57.418 30.769 5.77 0.00 39.73 2.15
5504 6232 9.203421 TCGCGTCAACTTTGATTATTATGATAT 57.797 29.630 5.77 0.00 39.73 1.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 1.414866 GGTTGGGTTGGGTTGGCATT 61.415 55.000 0.00 0.00 0.00 3.56
12 13 2.444895 GGTTGGGTTGGGTTGGCA 60.445 61.111 0.00 0.00 0.00 4.92
207 208 3.545703 GACCCACTGGATAATTGGACAG 58.454 50.000 0.00 0.00 37.01 3.51
364 378 2.988010 TAATCAAGAGCACCGCAGAT 57.012 45.000 0.00 0.00 0.00 2.90
365 379 2.760634 TTAATCAAGAGCACCGCAGA 57.239 45.000 0.00 0.00 0.00 4.26
366 380 4.553547 GCTAATTAATCAAGAGCACCGCAG 60.554 45.833 2.70 0.00 33.26 5.18
372 387 3.463329 AGGGGGCTAATTAATCAAGAGCA 59.537 43.478 11.47 0.00 34.76 4.26
391 406 1.406539 GCCAGTTAATGACATGCAGGG 59.593 52.381 2.31 0.00 0.00 4.45
394 409 2.093890 CAGGCCAGTTAATGACATGCA 58.906 47.619 5.01 0.00 0.00 3.96
395 410 2.368439 TCAGGCCAGTTAATGACATGC 58.632 47.619 5.01 0.00 0.00 4.06
396 411 3.317149 CCATCAGGCCAGTTAATGACATG 59.683 47.826 5.01 0.00 0.00 3.21
397 412 3.053395 ACCATCAGGCCAGTTAATGACAT 60.053 43.478 5.01 0.00 39.06 3.06
398 413 2.308570 ACCATCAGGCCAGTTAATGACA 59.691 45.455 5.01 0.00 39.06 3.58
399 414 2.945668 GACCATCAGGCCAGTTAATGAC 59.054 50.000 5.01 0.00 39.06 3.06
400 415 2.846206 AGACCATCAGGCCAGTTAATGA 59.154 45.455 5.01 0.00 39.06 2.57
401 416 2.947652 CAGACCATCAGGCCAGTTAATG 59.052 50.000 5.01 0.00 39.06 1.90
489 504 2.432444 GCTTGCACAGTACCACCAATA 58.568 47.619 0.00 0.00 0.00 1.90
517 541 4.023963 CCGCATCGTCTCTTCATCTAGTTA 60.024 45.833 0.00 0.00 0.00 2.24
534 558 1.750399 ACCACCATTGAGCCGCATC 60.750 57.895 0.00 0.00 0.00 3.91
570 594 6.393990 ACTGATCATGAGTTTGACTGAGTAC 58.606 40.000 0.09 0.00 0.00 2.73
647 686 5.119279 GCTCACGCCACATTATTACATAGAG 59.881 44.000 0.00 0.00 0.00 2.43
649 688 4.143326 CGCTCACGCCACATTATTACATAG 60.143 45.833 0.00 0.00 0.00 2.23
650 689 3.738791 CGCTCACGCCACATTATTACATA 59.261 43.478 0.00 0.00 0.00 2.29
655 694 0.392461 ACCGCTCACGCCACATTATT 60.392 50.000 0.00 0.00 38.22 1.40
656 695 1.089481 CACCGCTCACGCCACATTAT 61.089 55.000 0.00 0.00 38.22 1.28
658 697 3.049674 CACCGCTCACGCCACATT 61.050 61.111 0.00 0.00 38.22 2.71
666 705 0.814010 AAACTCCACACACCGCTCAC 60.814 55.000 0.00 0.00 0.00 3.51
688 727 2.670934 GTCCCAGCTGCCACTGTG 60.671 66.667 8.66 0.00 35.83 3.66
689 728 3.170672 TGTCCCAGCTGCCACTGT 61.171 61.111 8.66 0.00 35.83 3.55
690 729 2.670934 GTGTCCCAGCTGCCACTG 60.671 66.667 8.66 0.00 37.42 3.66
736 778 1.004745 AGGATCTGGAACATGGCGTTT 59.995 47.619 0.00 0.00 38.19 3.60
775 817 1.519234 CGGCGATTAGCTGTCAGCA 60.519 57.895 26.23 7.48 45.56 4.41
809 852 4.856801 AATGCGTAGGCGGCCCAG 62.857 66.667 17.02 8.54 44.10 4.45
810 853 3.929334 AAAATGCGTAGGCGGCCCA 62.929 57.895 17.02 6.79 44.10 5.36
848 891 2.485814 GGCTGAACTGGTAGCTCAAAAG 59.514 50.000 0.00 0.00 39.80 2.27
897 940 2.110420 CGGAAATACGGGGAGGGC 59.890 66.667 0.00 0.00 0.00 5.19
917 960 1.862201 TGGTGCGCGTTTGTATATAGC 59.138 47.619 8.43 0.00 0.00 2.97
1314 1371 3.621225 CTCTGGATGAGGCCGTCA 58.379 61.111 0.00 1.68 39.08 4.35
1615 1676 0.681564 AAACAACACCGGTCCAGCAA 60.682 50.000 2.59 0.00 0.00 3.91
1616 1677 1.077357 AAACAACACCGGTCCAGCA 60.077 52.632 2.59 0.00 0.00 4.41
1617 1678 0.818040 AGAAACAACACCGGTCCAGC 60.818 55.000 2.59 0.00 0.00 4.85
1684 1747 8.822805 ACTACAGGAGTATAAACCAAGATTTCA 58.177 33.333 0.00 0.00 36.27 2.69
1806 2129 6.110033 TGCGAAGATAAATTGTGCCTTACTA 58.890 36.000 0.00 0.00 0.00 1.82
1807 2130 4.941263 TGCGAAGATAAATTGTGCCTTACT 59.059 37.500 0.00 0.00 0.00 2.24
1808 2131 5.229921 TGCGAAGATAAATTGTGCCTTAC 57.770 39.130 0.00 0.00 0.00 2.34
1809 2132 6.449635 AATGCGAAGATAAATTGTGCCTTA 57.550 33.333 0.00 0.00 0.00 2.69
1810 2133 4.989279 ATGCGAAGATAAATTGTGCCTT 57.011 36.364 0.00 0.00 0.00 4.35
1811 2134 4.202050 GGAATGCGAAGATAAATTGTGCCT 60.202 41.667 0.00 0.00 0.00 4.75
1812 2135 4.044426 GGAATGCGAAGATAAATTGTGCC 58.956 43.478 0.00 0.00 0.00 5.01
1813 2136 4.925068 AGGAATGCGAAGATAAATTGTGC 58.075 39.130 0.00 0.00 0.00 4.57
1816 2139 7.756722 ACTGAAAAGGAATGCGAAGATAAATTG 59.243 33.333 0.00 0.00 0.00 2.32
1826 2229 5.763204 AGAAAACTACTGAAAAGGAATGCGA 59.237 36.000 0.00 0.00 0.00 5.10
1827 2230 5.853282 CAGAAAACTACTGAAAAGGAATGCG 59.147 40.000 0.00 0.00 37.54 4.73
1860 2263 8.881262 CCCCATAGTTCCAGATACTAATAAAGT 58.119 37.037 0.00 0.00 42.62 2.66
1861 2264 8.322091 CCCCCATAGTTCCAGATACTAATAAAG 58.678 40.741 0.00 0.00 32.28 1.85
1862 2265 8.020253 TCCCCCATAGTTCCAGATACTAATAAA 58.980 37.037 0.00 0.00 32.28 1.40
1863 2266 7.550042 TCCCCCATAGTTCCAGATACTAATAA 58.450 38.462 0.00 0.00 32.28 1.40
1864 2267 7.123560 TCCCCCATAGTTCCAGATACTAATA 57.876 40.000 0.00 0.00 32.28 0.98
1872 2275 1.698928 CCCATCCCCCATAGTTCCAGA 60.699 57.143 0.00 0.00 0.00 3.86
1892 2295 2.023741 CATCGCAACTCGCATGGC 59.976 61.111 0.00 0.00 42.60 4.40
1895 2298 1.129251 CAGAAACATCGCAACTCGCAT 59.871 47.619 0.00 0.00 42.60 4.73
1945 2361 6.634805 TCAACTCCAAACAAACAATAGCAAA 58.365 32.000 0.00 0.00 0.00 3.68
1967 2383 7.356479 GGGATATGAAACCCGTGAAGAATTCA 61.356 42.308 8.44 0.00 44.06 2.57
2003 2419 2.368875 GGGGATCGCTTTCATCCTCTAA 59.631 50.000 9.90 0.00 37.86 2.10
2009 2425 3.866883 TTTTTGGGGATCGCTTTCATC 57.133 42.857 9.90 0.00 0.00 2.92
2060 2476 5.515008 GGGAGTGAAGTTCCTTTGGAGTATT 60.515 44.000 0.00 0.00 35.01 1.89
2061 2477 4.019231 GGGAGTGAAGTTCCTTTGGAGTAT 60.019 45.833 0.00 0.00 35.01 2.12
2086 2502 7.924940 TCCTAAATGCAAATTCCAACAAAAAC 58.075 30.769 0.00 0.00 0.00 2.43
2117 2533 7.448420 AGCTAAGCTTCTGCATTCAAGATATA 58.552 34.615 21.32 0.00 42.74 0.86
2142 2558 6.881065 AGCTCAGAAGTCAAATGCTAATGTTA 59.119 34.615 0.00 0.00 0.00 2.41
2143 2559 5.709164 AGCTCAGAAGTCAAATGCTAATGTT 59.291 36.000 0.00 0.00 0.00 2.71
2144 2560 5.123502 CAGCTCAGAAGTCAAATGCTAATGT 59.876 40.000 0.00 0.00 0.00 2.71
2145 2561 5.123502 ACAGCTCAGAAGTCAAATGCTAATG 59.876 40.000 0.00 0.00 0.00 1.90
2146 2562 5.251764 ACAGCTCAGAAGTCAAATGCTAAT 58.748 37.500 0.00 0.00 0.00 1.73
2147 2563 4.645535 ACAGCTCAGAAGTCAAATGCTAA 58.354 39.130 0.00 0.00 0.00 3.09
2148 2564 4.277515 ACAGCTCAGAAGTCAAATGCTA 57.722 40.909 0.00 0.00 0.00 3.49
2149 2565 3.137446 ACAGCTCAGAAGTCAAATGCT 57.863 42.857 0.00 0.00 0.00 3.79
2150 2566 3.911661 AACAGCTCAGAAGTCAAATGC 57.088 42.857 0.00 0.00 0.00 3.56
2196 2612 1.154413 GAACTTGCATGTGACGCCG 60.154 57.895 5.94 0.00 0.00 6.46
2200 2616 4.931601 TGACTCATAGAACTTGCATGTGAC 59.068 41.667 5.94 4.31 0.00 3.67
2246 2662 6.369065 GTCAATAACCTACTGTGTTCCTTCAG 59.631 42.308 0.00 0.00 37.65 3.02
2248 2664 5.642491 GGTCAATAACCTACTGTGTTCCTTC 59.358 44.000 0.00 0.00 45.45 3.46
2291 2707 8.974060 TGTGTACATCTCCTTTCTTTTAAAGT 57.026 30.769 0.00 0.00 0.00 2.66
2294 2710 9.621629 TCTTTGTGTACATCTCCTTTCTTTTAA 57.378 29.630 0.00 0.00 0.00 1.52
2295 2711 9.621629 TTCTTTGTGTACATCTCCTTTCTTTTA 57.378 29.630 0.00 0.00 0.00 1.52
2296 2712 8.519799 TTCTTTGTGTACATCTCCTTTCTTTT 57.480 30.769 0.00 0.00 0.00 2.27
2297 2713 8.519799 TTTCTTTGTGTACATCTCCTTTCTTT 57.480 30.769 0.00 0.00 0.00 2.52
2298 2714 8.519799 TTTTCTTTGTGTACATCTCCTTTCTT 57.480 30.769 0.00 0.00 0.00 2.52
2299 2715 8.697507 ATTTTCTTTGTGTACATCTCCTTTCT 57.302 30.769 0.00 0.00 0.00 2.52
2302 2718 9.793259 TCTAATTTTCTTTGTGTACATCTCCTT 57.207 29.630 0.00 0.00 0.00 3.36
2303 2719 9.442047 CTCTAATTTTCTTTGTGTACATCTCCT 57.558 33.333 0.00 0.00 0.00 3.69
2304 2720 9.436957 TCTCTAATTTTCTTTGTGTACATCTCC 57.563 33.333 0.00 0.00 0.00 3.71
2329 2745 9.850628 GGTTAAAGGATTGGTTATGTAACTTTC 57.149 33.333 3.22 0.00 36.47 2.62
2337 2753 6.597832 TGTTGGGTTAAAGGATTGGTTATG 57.402 37.500 0.00 0.00 0.00 1.90
2353 2769 5.652452 GGCAAGAGAAATACTTATGTTGGGT 59.348 40.000 0.00 0.00 0.00 4.51
2357 2773 7.707035 CGTAGAGGCAAGAGAAATACTTATGTT 59.293 37.037 0.00 0.00 0.00 2.71
2360 2776 7.584122 TCGTAGAGGCAAGAGAAATACTTAT 57.416 36.000 0.00 0.00 0.00 1.73
2376 2792 3.928727 TGGTGTACTGTTTCGTAGAGG 57.071 47.619 0.00 0.00 38.43 3.69
2389 2805 5.817816 CACTATCAAGGAGGAAATGGTGTAC 59.182 44.000 0.00 0.00 0.00 2.90
2392 2808 4.637534 CACACTATCAAGGAGGAAATGGTG 59.362 45.833 0.00 0.00 0.00 4.17
2394 2810 4.848357 ACACACTATCAAGGAGGAAATGG 58.152 43.478 0.00 0.00 0.00 3.16
2395 2811 5.583854 CAGACACACTATCAAGGAGGAAATG 59.416 44.000 0.00 0.00 0.00 2.32
2415 2840 3.755378 CCCAATCCTATATTGCTGCAGAC 59.245 47.826 20.43 9.67 0.00 3.51
2441 2866 1.135199 ACGATTACACTGTAGCACCGG 60.135 52.381 0.00 0.00 0.00 5.28
2443 2868 4.103357 CAGTACGATTACACTGTAGCACC 58.897 47.826 0.00 0.00 37.87 5.01
2450 2875 9.135843 TCTTCATTTTACAGTACGATTACACTG 57.864 33.333 0.00 0.36 46.15 3.66
2452 2877 9.953825 CTTCTTCATTTTACAGTACGATTACAC 57.046 33.333 0.00 0.00 0.00 2.90
2453 2878 9.146984 CCTTCTTCATTTTACAGTACGATTACA 57.853 33.333 0.00 0.00 0.00 2.41
2454 2879 9.362539 TCCTTCTTCATTTTACAGTACGATTAC 57.637 33.333 0.00 0.00 0.00 1.89
2458 2883 7.876068 ACATTCCTTCTTCATTTTACAGTACGA 59.124 33.333 0.00 0.00 0.00 3.43
2459 2884 8.029642 ACATTCCTTCTTCATTTTACAGTACG 57.970 34.615 0.00 0.00 0.00 3.67
2462 2887 9.793259 TCTAACATTCCTTCTTCATTTTACAGT 57.207 29.630 0.00 0.00 0.00 3.55
2466 2891 9.151471 CGTCTCTAACATTCCTTCTTCATTTTA 57.849 33.333 0.00 0.00 0.00 1.52
2467 2892 7.661847 ACGTCTCTAACATTCCTTCTTCATTTT 59.338 33.333 0.00 0.00 0.00 1.82
2468 2893 7.162082 ACGTCTCTAACATTCCTTCTTCATTT 58.838 34.615 0.00 0.00 0.00 2.32
2469 2894 6.702329 ACGTCTCTAACATTCCTTCTTCATT 58.298 36.000 0.00 0.00 0.00 2.57
2470 2895 6.287589 ACGTCTCTAACATTCCTTCTTCAT 57.712 37.500 0.00 0.00 0.00 2.57
2471 2896 5.723672 ACGTCTCTAACATTCCTTCTTCA 57.276 39.130 0.00 0.00 0.00 3.02
2472 2897 7.201453 GCTAAACGTCTCTAACATTCCTTCTTC 60.201 40.741 0.00 0.00 0.00 2.87
2473 2898 6.590677 GCTAAACGTCTCTAACATTCCTTCTT 59.409 38.462 0.00 0.00 0.00 2.52
2474 2899 6.100668 GCTAAACGTCTCTAACATTCCTTCT 58.899 40.000 0.00 0.00 0.00 2.85
2475 2900 5.867716 TGCTAAACGTCTCTAACATTCCTTC 59.132 40.000 0.00 0.00 0.00 3.46
2476 2901 5.790593 TGCTAAACGTCTCTAACATTCCTT 58.209 37.500 0.00 0.00 0.00 3.36
2477 2902 5.185249 TCTGCTAAACGTCTCTAACATTCCT 59.815 40.000 0.00 0.00 0.00 3.36
2478 2903 5.408356 TCTGCTAAACGTCTCTAACATTCC 58.592 41.667 0.00 0.00 0.00 3.01
2479 2904 7.527084 AATCTGCTAAACGTCTCTAACATTC 57.473 36.000 0.00 0.00 0.00 2.67
2480 2905 9.601217 AATAATCTGCTAAACGTCTCTAACATT 57.399 29.630 0.00 0.00 0.00 2.71
2481 2906 9.601217 AAATAATCTGCTAAACGTCTCTAACAT 57.399 29.630 0.00 0.00 0.00 2.71
2482 2907 8.997621 AAATAATCTGCTAAACGTCTCTAACA 57.002 30.769 0.00 0.00 0.00 2.41
2518 2943 8.798402 CCCAACAGTTATTTTATCCACAGTAAA 58.202 33.333 0.00 0.00 0.00 2.01
2519 2944 8.164733 TCCCAACAGTTATTTTATCCACAGTAA 58.835 33.333 0.00 0.00 0.00 2.24
2520 2945 7.608761 GTCCCAACAGTTATTTTATCCACAGTA 59.391 37.037 0.00 0.00 0.00 2.74
2521 2946 6.433093 GTCCCAACAGTTATTTTATCCACAGT 59.567 38.462 0.00 0.00 0.00 3.55
2522 2947 6.432783 TGTCCCAACAGTTATTTTATCCACAG 59.567 38.462 0.00 0.00 0.00 3.66
2523 2948 6.307776 TGTCCCAACAGTTATTTTATCCACA 58.692 36.000 0.00 0.00 0.00 4.17
2524 2949 6.827586 TGTCCCAACAGTTATTTTATCCAC 57.172 37.500 0.00 0.00 0.00 4.02
2538 2963 1.065199 GCATCTGGATCTGTCCCAACA 60.065 52.381 0.00 0.00 44.41 3.33
2539 2964 1.211457 AGCATCTGGATCTGTCCCAAC 59.789 52.381 0.00 0.00 44.41 3.77
2550 2975 2.254152 AGTTACAGGGAGCATCTGGA 57.746 50.000 6.06 0.00 36.62 3.86
2551 2976 4.696479 ATTAGTTACAGGGAGCATCTGG 57.304 45.455 6.06 0.00 36.62 3.86
2558 2983 6.575162 AGCAAAACAATTAGTTACAGGGAG 57.425 37.500 0.00 0.00 40.26 4.30
2604 3029 5.068855 ACATGATTGACAGAGAGATGATCGT 59.931 40.000 0.00 0.00 0.00 3.73
2605 3030 5.530712 ACATGATTGACAGAGAGATGATCG 58.469 41.667 0.00 0.00 0.00 3.69
2621 3046 5.105797 ACACACACACACAAGAAACATGATT 60.106 36.000 0.00 0.00 0.00 2.57
2622 3047 4.398988 ACACACACACACAAGAAACATGAT 59.601 37.500 0.00 0.00 0.00 2.45
2624 3049 3.853103 CACACACACACACAAGAAACATG 59.147 43.478 0.00 0.00 0.00 3.21
2626 3051 2.227626 CCACACACACACACAAGAAACA 59.772 45.455 0.00 0.00 0.00 2.83
2673 3118 3.525800 AAACAAAGTGGGTCCAGCTAT 57.474 42.857 0.00 0.00 0.00 2.97
2733 3249 7.309012 GCCATGCTCATATCACAATGAAATAGT 60.309 37.037 0.00 0.00 35.51 2.12
2734 3250 7.027760 GCCATGCTCATATCACAATGAAATAG 58.972 38.462 0.00 0.00 35.51 1.73
2738 3254 4.208746 TGCCATGCTCATATCACAATGAA 58.791 39.130 0.00 0.00 35.51 2.57
2767 3285 3.189606 TGGGTATCCAATCCAGTCAACT 58.810 45.455 0.00 0.00 40.73 3.16
2826 3344 4.762765 TGGTAATTGTAGTGCACCGAATTT 59.237 37.500 14.63 5.23 31.64 1.82
2827 3345 4.155280 GTGGTAATTGTAGTGCACCGAATT 59.845 41.667 14.63 16.53 31.64 2.17
2840 3358 5.772672 TGCATAAGACTTTGGTGGTAATTGT 59.227 36.000 0.00 0.00 0.00 2.71
2841 3359 6.266168 TGCATAAGACTTTGGTGGTAATTG 57.734 37.500 0.00 0.00 0.00 2.32
2844 3362 6.909550 AAATGCATAAGACTTTGGTGGTAA 57.090 33.333 0.00 0.00 0.00 2.85
2862 3380 3.245048 GGCACGGCAAATACATTAAATGC 59.755 43.478 0.00 0.00 36.31 3.56
2919 3491 1.380112 GGCGTAGGGTGAGAGAGGT 60.380 63.158 0.00 0.00 0.00 3.85
2938 3510 4.751060 CTTTACTGCTATGGACAACCGTA 58.249 43.478 0.00 0.00 39.42 4.02
2941 3513 2.683362 GGCTTTACTGCTATGGACAACC 59.317 50.000 0.00 0.00 0.00 3.77
2958 3530 2.750350 CTCCTGTTCCCGTGGCTT 59.250 61.111 0.00 0.00 0.00 4.35
2964 3536 4.148825 CGCCTCCTCCTGTTCCCG 62.149 72.222 0.00 0.00 0.00 5.14
2969 3541 2.039624 ACATCCGCCTCCTCCTGT 59.960 61.111 0.00 0.00 0.00 4.00
2997 3569 9.174166 GGCCTTCTAATTAATCAACTCAACTTA 57.826 33.333 0.00 0.00 0.00 2.24
3007 3579 8.055181 AGAAGTGATTGGCCTTCTAATTAATCA 58.945 33.333 3.32 5.49 44.18 2.57
3010 3582 7.633789 AGAGAAGTGATTGGCCTTCTAATTAA 58.366 34.615 3.32 0.00 45.57 1.40
3099 3677 9.254133 GTTGATATCATCTTCTTCGAGAATGAA 57.746 33.333 6.17 0.00 33.13 2.57
3123 3701 8.031864 TGTTTGGCAATCAATACGAATAATGTT 58.968 29.630 8.48 0.00 34.98 2.71
3140 3718 3.745799 TCTCCGTTAGATTGTTTGGCAA 58.254 40.909 0.00 0.00 41.89 4.52
3142 3720 3.596214 TCTCTCCGTTAGATTGTTTGGC 58.404 45.455 0.00 0.00 32.41 4.52
3148 3726 5.105752 CCAGAACTTCTCTCCGTTAGATTG 58.894 45.833 0.00 0.00 32.41 2.67
3157 3764 3.181485 CGATACCACCAGAACTTCTCTCC 60.181 52.174 0.00 0.00 29.07 3.71
3165 3772 2.073816 CAACACCGATACCACCAGAAC 58.926 52.381 0.00 0.00 0.00 3.01
3229 3836 8.429641 TGGGGAAATTGACTATCTATGACTTAC 58.570 37.037 0.00 0.00 0.00 2.34
3234 3841 6.688922 GCAGTGGGGAAATTGACTATCTATGA 60.689 42.308 0.00 0.00 0.00 2.15
3251 3858 0.394352 GGGAGTACAATGCAGTGGGG 60.394 60.000 19.57 0.00 0.00 4.96
3255 3862 0.537188 CGGAGGGAGTACAATGCAGT 59.463 55.000 0.00 0.00 0.00 4.40
3256 3863 0.537188 ACGGAGGGAGTACAATGCAG 59.463 55.000 0.00 0.00 0.00 4.41
3257 3864 1.855295 TACGGAGGGAGTACAATGCA 58.145 50.000 0.00 0.00 0.00 3.96
3258 3865 2.934553 GTTTACGGAGGGAGTACAATGC 59.065 50.000 0.00 0.00 0.00 3.56
3259 3866 4.467198 AGTTTACGGAGGGAGTACAATG 57.533 45.455 0.00 0.00 0.00 2.82
3260 3867 6.803366 ATTAGTTTACGGAGGGAGTACAAT 57.197 37.500 0.00 0.00 0.00 2.71
3261 3868 7.902920 ATATTAGTTTACGGAGGGAGTACAA 57.097 36.000 0.00 0.00 0.00 2.41
3262 3869 8.995027 TTATATTAGTTTACGGAGGGAGTACA 57.005 34.615 0.00 0.00 0.00 2.90
3263 3870 9.289782 TCTTATATTAGTTTACGGAGGGAGTAC 57.710 37.037 0.00 0.00 0.00 2.73
3264 3871 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
3265 3872 7.039853 GCTCTTATATTAGTTTACGGAGGGAGT 60.040 40.741 0.00 0.00 0.00 3.85
3266 3873 7.314393 GCTCTTATATTAGTTTACGGAGGGAG 58.686 42.308 0.00 0.00 0.00 4.30
3268 3875 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
3269 3876 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
3270 3877 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
3271 3878 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
3272 3879 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
3319 3926 9.710818 TCCCTCTGTAAACTAATATAAGAGTGT 57.289 33.333 0.00 0.00 0.00 3.55
3321 3928 9.939424 ACTCCCTCTGTAAACTAATATAAGAGT 57.061 33.333 0.00 0.00 0.00 3.24
3371 3979 4.689345 GCATTGGTTTAGGCCTATACTACG 59.311 45.833 26.36 17.48 0.00 3.51
3766 4376 5.068855 TGAATGGATGTCAAGCTTTGTCAAA 59.931 36.000 0.00 0.00 32.78 2.69
3882 4492 6.189859 AGGCTTGTGAGATTTCCAAATGATA 58.810 36.000 0.00 0.00 0.00 2.15
4069 4679 3.154827 TCTGGAAGGGCTTTTAACTGG 57.845 47.619 0.00 0.00 0.00 4.00
4243 4853 5.003804 ACATTTAACTTCACCAGGCTAGTG 58.996 41.667 6.75 6.75 36.54 2.74
4252 4862 4.072131 TCCTGCTGACATTTAACTTCACC 58.928 43.478 0.00 0.00 0.00 4.02
4336 4946 0.689055 TCTGGTTGCTGCTGATGTCT 59.311 50.000 0.00 0.00 0.00 3.41
4767 5382 9.739276 ACATAGGAAGAATACAAACATGAAAGA 57.261 29.630 0.00 0.00 0.00 2.52
4780 5402 8.729756 CACACAAATCACAACATAGGAAGAATA 58.270 33.333 0.00 0.00 0.00 1.75
4791 5413 5.124617 ACACATACACACACAAATCACAACA 59.875 36.000 0.00 0.00 0.00 3.33
4795 5417 6.539649 ACTACACATACACACACAAATCAC 57.460 37.500 0.00 0.00 0.00 3.06
4796 5418 7.561021 AAACTACACATACACACACAAATCA 57.439 32.000 0.00 0.00 0.00 2.57
4797 5419 8.342634 AGAAAACTACACATACACACACAAATC 58.657 33.333 0.00 0.00 0.00 2.17
4798 5420 8.220755 AGAAAACTACACATACACACACAAAT 57.779 30.769 0.00 0.00 0.00 2.32
4881 5530 9.950680 CATGTTTAATGTAATTGAGGGTCATAC 57.049 33.333 0.00 0.00 36.99 2.39
5024 5674 8.910351 AAGAGAAACAGCTTAAAGATAACAGT 57.090 30.769 0.00 0.00 0.00 3.55
5049 5699 5.482175 TCTGGACCCTTCTTTTGTTCAAAAA 59.518 36.000 11.06 0.00 0.00 1.94
5050 5700 5.020132 TCTGGACCCTTCTTTTGTTCAAAA 58.980 37.500 9.78 9.78 0.00 2.44
5051 5701 4.605183 TCTGGACCCTTCTTTTGTTCAAA 58.395 39.130 0.00 0.00 0.00 2.69
5052 5702 4.207165 CTCTGGACCCTTCTTTTGTTCAA 58.793 43.478 0.00 0.00 0.00 2.69
5053 5703 3.202151 ACTCTGGACCCTTCTTTTGTTCA 59.798 43.478 0.00 0.00 0.00 3.18
5054 5704 3.821748 ACTCTGGACCCTTCTTTTGTTC 58.178 45.455 0.00 0.00 0.00 3.18
5055 5705 3.953542 ACTCTGGACCCTTCTTTTGTT 57.046 42.857 0.00 0.00 0.00 2.83
5056 5706 3.202151 TGAACTCTGGACCCTTCTTTTGT 59.798 43.478 0.00 0.00 0.00 2.83
5057 5707 3.565902 GTGAACTCTGGACCCTTCTTTTG 59.434 47.826 0.00 0.00 0.00 2.44
5058 5708 3.459969 AGTGAACTCTGGACCCTTCTTTT 59.540 43.478 0.00 0.00 0.00 2.27
5059 5709 3.049344 AGTGAACTCTGGACCCTTCTTT 58.951 45.455 0.00 0.00 0.00 2.52
5060 5710 2.635427 GAGTGAACTCTGGACCCTTCTT 59.365 50.000 3.13 0.00 39.81 2.52
5061 5711 2.252714 GAGTGAACTCTGGACCCTTCT 58.747 52.381 3.13 0.00 39.81 2.85
5062 5712 2.753055 GAGTGAACTCTGGACCCTTC 57.247 55.000 3.13 0.00 39.81 3.46
5296 5970 6.136071 AGAAAAATGTGTCGAATTTGACTCG 58.864 36.000 23.32 2.42 39.64 4.18
5375 6063 1.064463 ACGCATGAATGGTTCCATCCT 60.064 47.619 4.72 0.00 0.00 3.24
5462 6190 4.851014 TGACGCGAATTTGAAAATGACATC 59.149 37.500 15.93 0.00 0.00 3.06
5463 6191 4.793071 TGACGCGAATTTGAAAATGACAT 58.207 34.783 15.93 0.00 0.00 3.06
5464 6192 4.216366 TGACGCGAATTTGAAAATGACA 57.784 36.364 15.93 0.00 0.00 3.58
5465 6193 4.675114 AGTTGACGCGAATTTGAAAATGAC 59.325 37.500 15.93 0.00 0.00 3.06
5466 6194 4.854399 AGTTGACGCGAATTTGAAAATGA 58.146 34.783 15.93 0.00 0.00 2.57
5467 6195 5.559694 AAGTTGACGCGAATTTGAAAATG 57.440 34.783 15.93 0.00 0.00 2.32
5468 6196 5.746245 TCAAAGTTGACGCGAATTTGAAAAT 59.254 32.000 15.93 0.00 37.04 1.82
5469 6197 5.096169 TCAAAGTTGACGCGAATTTGAAAA 58.904 33.333 15.93 0.00 37.04 2.29
5470 6198 4.663166 TCAAAGTTGACGCGAATTTGAAA 58.337 34.783 15.93 0.00 37.04 2.69
5471 6199 4.280101 TCAAAGTTGACGCGAATTTGAA 57.720 36.364 15.93 0.56 37.04 2.69
5472 6200 3.953874 TCAAAGTTGACGCGAATTTGA 57.046 38.095 15.93 15.40 37.49 2.69
5473 6201 6.853279 ATAATCAAAGTTGACGCGAATTTG 57.147 33.333 15.93 13.08 40.49 2.32
5474 6202 9.009327 CATAATAATCAAAGTTGACGCGAATTT 57.991 29.630 15.93 0.00 40.49 1.82
5475 6203 8.394877 TCATAATAATCAAAGTTGACGCGAATT 58.605 29.630 15.93 0.00 40.49 2.17
5476 6204 7.915508 TCATAATAATCAAAGTTGACGCGAAT 58.084 30.769 15.93 0.00 40.49 3.34
5477 6205 7.297229 TCATAATAATCAAAGTTGACGCGAA 57.703 32.000 15.93 0.00 40.49 4.70
5478 6206 6.895607 TCATAATAATCAAAGTTGACGCGA 57.104 33.333 15.93 0.00 40.49 5.87
5561 6289 8.646356 GCGAATTTGAAAATGACATCAATAACA 58.354 29.630 0.00 0.00 35.63 2.41
5562 6290 7.836017 CGCGAATTTGAAAATGACATCAATAAC 59.164 33.333 0.00 0.00 35.63 1.89
5563 6291 7.540400 ACGCGAATTTGAAAATGACATCAATAA 59.460 29.630 15.93 0.00 35.63 1.40
5564 6292 7.026562 ACGCGAATTTGAAAATGACATCAATA 58.973 30.769 15.93 0.00 35.63 1.90
5565 6293 5.863397 ACGCGAATTTGAAAATGACATCAAT 59.137 32.000 15.93 0.00 35.63 2.57
5566 6294 5.218885 ACGCGAATTTGAAAATGACATCAA 58.781 33.333 15.93 0.00 33.93 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.