Multiple sequence alignment - TraesCS1B01G205600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G205600 chr1B 100.000 4822 0 0 1 4822 370160182 370165003 0.000000e+00 8905.0
1 TraesCS1B01G205600 chr1B 95.954 173 7 0 1462 1634 633286993 633286821 1.020000e-71 281.0
2 TraesCS1B01G205600 chr1B 100.000 29 0 0 1091 1119 571195390 571195418 2.000000e-03 54.7
3 TraesCS1B01G205600 chr1A 95.971 1092 42 2 1627 2717 333919604 333920694 0.000000e+00 1772.0
4 TraesCS1B01G205600 chr1A 94.146 1042 52 7 3164 4196 333921262 333922303 0.000000e+00 1578.0
5 TraesCS1B01G205600 chr1A 94.595 444 19 4 2722 3165 333920730 333921168 0.000000e+00 682.0
6 TraesCS1B01G205600 chr1A 90.959 365 24 2 1116 1480 333919181 333919536 2.610000e-132 483.0
7 TraesCS1B01G205600 chr1A 90.988 344 14 11 4481 4822 333926247 333926575 9.520000e-122 448.0
8 TraesCS1B01G205600 chr1A 91.667 228 16 2 856 1083 333918960 333919184 3.620000e-81 313.0
9 TraesCS1B01G205600 chr1A 88.945 199 21 1 626 823 333918679 333918877 1.340000e-60 244.0
10 TraesCS1B01G205600 chr1A 93.600 125 8 0 4404 4528 333922589 333922713 2.290000e-43 187.0
11 TraesCS1B01G205600 chr1A 85.965 171 12 1 4317 4475 333922421 333922591 6.420000e-39 172.0
12 TraesCS1B01G205600 chr1A 90.722 97 6 2 51 147 333918205 333918298 5.070000e-25 126.0
13 TraesCS1B01G205600 chr1A 92.857 56 4 0 4521 4576 333926191 333926246 1.110000e-11 82.4
14 TraesCS1B01G205600 chr1A 85.714 56 6 2 1091 1144 520571590 520571645 1.870000e-04 58.4
15 TraesCS1B01G205600 chr1D 95.616 1095 47 1 1627 2720 268931637 268930543 0.000000e+00 1755.0
16 TraesCS1B01G205600 chr1D 94.118 901 48 4 3303 4198 268929838 268928938 0.000000e+00 1365.0
17 TraesCS1B01G205600 chr1D 91.806 598 35 11 2722 3308 268930510 268929916 0.000000e+00 821.0
18 TraesCS1B01G205600 chr1D 83.389 602 61 19 1 602 268933219 268932657 5.530000e-144 521.0
19 TraesCS1B01G205600 chr1D 90.489 368 29 1 1116 1483 268932063 268931702 9.390000e-132 481.0
20 TraesCS1B01G205600 chr1D 91.202 341 16 10 4484 4822 268928606 268928278 7.360000e-123 451.0
21 TraesCS1B01G205600 chr1D 89.591 269 16 5 4317 4575 268928877 268928611 1.000000e-86 331.0
22 TraesCS1B01G205600 chr1D 88.362 232 24 2 852 1083 268932288 268932060 4.750000e-70 276.0
23 TraesCS1B01G205600 chr1D 88.166 169 15 2 667 830 268932527 268932359 3.810000e-46 196.0
24 TraesCS1B01G205600 chr3B 98.160 163 3 0 1472 1634 138483129 138482967 7.900000e-73 285.0
25 TraesCS1B01G205600 chr3B 86.992 123 9 4 4192 4314 52425265 52425380 1.090000e-26 132.0
26 TraesCS1B01G205600 chr3B 86.667 120 13 2 4195 4314 99024089 99023973 3.920000e-26 130.0
27 TraesCS1B01G205600 chr2B 97.590 166 4 0 1469 1634 71708534 71708699 7.900000e-73 285.0
28 TraesCS1B01G205600 chr2B 97.041 169 5 0 1469 1637 165115224 165115056 7.900000e-73 285.0
29 TraesCS1B01G205600 chr2B 94.022 184 10 1 1466 1649 664125032 664125214 1.320000e-70 278.0
30 TraesCS1B01G205600 chr2B 93.023 43 0 2 1091 1133 223534258 223534219 5.210000e-05 60.2
31 TraesCS1B01G205600 chr3D 97.024 168 5 0 1467 1634 569577333 569577166 2.840000e-72 283.0
32 TraesCS1B01G205600 chr3D 95.930 172 6 1 1467 1638 604180678 604180848 1.320000e-70 278.0
33 TraesCS1B01G205600 chr3D 86.154 130 10 2 4185 4314 3220174 3220295 3.030000e-27 134.0
34 TraesCS1B01G205600 chr3D 86.885 122 8 2 4193 4314 609106313 609106200 3.920000e-26 130.0
35 TraesCS1B01G205600 chr3D 86.179 123 9 2 4193 4314 445035254 445035139 5.070000e-25 126.0
36 TraesCS1B01G205600 chr3D 90.698 43 2 2 1091 1131 526827448 526827406 6.740000e-04 56.5
37 TraesCS1B01G205600 chr7B 96.407 167 6 0 1472 1638 497576786 497576620 4.750000e-70 276.0
38 TraesCS1B01G205600 chr7D 94.828 174 9 0 1469 1642 224056548 224056721 6.150000e-69 272.0
39 TraesCS1B01G205600 chr7D 86.667 120 12 2 4196 4314 460510143 460510259 3.920000e-26 130.0
40 TraesCS1B01G205600 chr3A 87.705 122 8 2 4193 4314 203993389 203993503 8.420000e-28 135.0
41 TraesCS1B01G205600 chr6D 87.500 120 7 2 4195 4314 17055003 17055114 1.090000e-26 132.0
42 TraesCS1B01G205600 chr6D 97.222 36 1 0 1091 1126 458993862 458993827 1.450000e-05 62.1
43 TraesCS1B01G205600 chr4D 84.559 136 12 5 4195 4329 367720660 367720533 5.070000e-25 126.0
44 TraesCS1B01G205600 chr4D 85.000 60 6 3 1091 1147 33279505 33279446 1.870000e-04 58.4
45 TraesCS1B01G205600 chr7A 97.222 36 1 0 1091 1126 512440392 512440427 1.450000e-05 62.1
46 TraesCS1B01G205600 chr7A 90.909 44 1 2 1091 1134 643187181 643187221 6.740000e-04 56.5
47 TraesCS1B01G205600 chr6A 90.698 43 2 2 1091 1131 137273618 137273576 6.740000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G205600 chr1B 370160182 370165003 4821 False 8905.000000 8905 100.000000 1 4822 1 chr1B.!!$F1 4821
1 TraesCS1B01G205600 chr1A 333918205 333926575 8370 False 553.400000 1772 91.855909 51 4822 11 chr1A.!!$F2 4771
2 TraesCS1B01G205600 chr1D 268928278 268933219 4941 True 688.555556 1755 90.304333 1 4822 9 chr1D.!!$R1 4821

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
962 1084 0.106708 TGACTGAGGACCTTGTGTGC 59.893 55.0 0.00 0.0 35.12 4.57 F
1048 1170 0.040204 AGGTGAGCCATTTTCCCCTG 59.960 55.0 0.00 0.0 37.19 4.45 F
1686 1808 0.257039 AGGTGATGACCATTCCCAGC 59.743 55.0 3.51 0.0 45.98 4.85 F
2919 3083 0.034059 CAGTCTGTCCGCTGGAGTTT 59.966 55.0 0.00 0.0 29.39 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2038 2161 0.254462 TTGGTGACAGTGGCTCAACA 59.746 50.000 0.00 0.0 44.54 3.33 R
2134 2257 1.067565 TCAGACGCTGTCTTGTCCATC 60.068 52.381 8.23 0.0 41.37 3.51 R
3518 3863 0.378257 ATTTCTTAGTGCCGCATGCG 59.622 50.000 32.60 32.6 45.60 4.73 R
4113 4464 0.316204 AAACCTGATTGCTGCACTGC 59.684 50.000 0.00 0.0 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.945434 GCAGCGATGGATGCGTGG 61.945 66.667 1.20 0.00 46.62 4.94
21 22 1.893808 GCGATGGATGCGTGGGATT 60.894 57.895 0.00 0.00 0.00 3.01
22 23 1.845809 GCGATGGATGCGTGGGATTC 61.846 60.000 0.00 0.00 0.00 2.52
26 27 2.180204 GGATGCGTGGGATTCGTGG 61.180 63.158 0.00 0.00 0.00 4.94
32 33 0.249073 CGTGGGATTCGTGGAGCTAG 60.249 60.000 0.00 0.00 0.00 3.42
33 34 1.112113 GTGGGATTCGTGGAGCTAGA 58.888 55.000 0.00 0.00 0.00 2.43
34 35 1.112113 TGGGATTCGTGGAGCTAGAC 58.888 55.000 0.00 0.00 0.00 2.59
35 36 1.112113 GGGATTCGTGGAGCTAGACA 58.888 55.000 0.00 0.00 0.00 3.41
36 37 1.067821 GGGATTCGTGGAGCTAGACAG 59.932 57.143 0.00 0.00 0.00 3.51
86 87 8.578308 TCTTCTAATTCAACTGCAAACAAATG 57.422 30.769 0.00 0.00 0.00 2.32
87 88 8.196771 TCTTCTAATTCAACTGCAAACAAATGT 58.803 29.630 0.00 0.00 0.00 2.71
115 116 3.921119 TTGTGTAGCTCAAGCAAATGG 57.079 42.857 4.59 0.00 45.16 3.16
120 121 0.316204 AGCTCAAGCAAATGGTGTGC 59.684 50.000 4.59 0.00 45.16 4.57
125 126 4.539152 GCAAATGGTGTGCTGTCG 57.461 55.556 0.00 0.00 39.00 4.35
135 136 1.656095 GTGTGCTGTCGTCTGCTTATC 59.344 52.381 12.13 2.70 38.91 1.75
141 142 3.868077 GCTGTCGTCTGCTTATCATTCTT 59.132 43.478 4.40 0.00 35.98 2.52
147 148 5.700832 TCGTCTGCTTATCATTCTTTGTGTT 59.299 36.000 0.00 0.00 0.00 3.32
148 149 5.791974 CGTCTGCTTATCATTCTTTGTGTTG 59.208 40.000 0.00 0.00 0.00 3.33
149 150 5.570589 GTCTGCTTATCATTCTTTGTGTTGC 59.429 40.000 0.00 0.00 0.00 4.17
150 151 5.474532 TCTGCTTATCATTCTTTGTGTTGCT 59.525 36.000 0.00 0.00 0.00 3.91
151 152 5.463286 TGCTTATCATTCTTTGTGTTGCTG 58.537 37.500 0.00 0.00 0.00 4.41
152 153 4.860907 GCTTATCATTCTTTGTGTTGCTGG 59.139 41.667 0.00 0.00 0.00 4.85
153 154 5.335897 GCTTATCATTCTTTGTGTTGCTGGA 60.336 40.000 0.00 0.00 0.00 3.86
154 155 6.626623 GCTTATCATTCTTTGTGTTGCTGGAT 60.627 38.462 0.00 0.00 0.00 3.41
155 156 4.771590 TCATTCTTTGTGTTGCTGGATC 57.228 40.909 0.00 0.00 0.00 3.36
156 157 3.507233 TCATTCTTTGTGTTGCTGGATCC 59.493 43.478 4.20 4.20 0.00 3.36
157 158 2.957402 TCTTTGTGTTGCTGGATCCT 57.043 45.000 14.23 0.00 0.00 3.24
158 159 2.783135 TCTTTGTGTTGCTGGATCCTC 58.217 47.619 14.23 5.46 0.00 3.71
159 160 2.106338 TCTTTGTGTTGCTGGATCCTCA 59.894 45.455 14.23 8.23 0.00 3.86
160 161 2.189594 TTGTGTTGCTGGATCCTCAG 57.810 50.000 14.23 3.79 37.79 3.35
161 162 1.351076 TGTGTTGCTGGATCCTCAGA 58.649 50.000 14.23 0.81 36.93 3.27
162 163 1.277273 TGTGTTGCTGGATCCTCAGAG 59.723 52.381 14.23 2.58 36.93 3.35
163 164 0.907486 TGTTGCTGGATCCTCAGAGG 59.093 55.000 14.23 10.70 36.93 3.69
164 165 0.908198 GTTGCTGGATCCTCAGAGGT 59.092 55.000 16.65 3.81 36.53 3.85
165 166 1.280421 GTTGCTGGATCCTCAGAGGTT 59.720 52.381 16.65 8.16 36.53 3.50
203 204 2.995283 TCCTGCATGGAGATGTTCTTG 58.005 47.619 16.85 0.00 40.56 3.02
211 212 5.575957 CATGGAGATGTTCTTGGAATTTCG 58.424 41.667 0.00 0.00 0.00 3.46
214 215 6.234920 TGGAGATGTTCTTGGAATTTCGTAA 58.765 36.000 0.00 0.00 0.00 3.18
223 224 6.053005 TCTTGGAATTTCGTAACAACAGACT 58.947 36.000 0.00 0.00 0.00 3.24
267 268 1.557371 TGATCCCGTGCAAGGATAACA 59.443 47.619 21.23 11.51 44.36 2.41
268 269 2.172505 TGATCCCGTGCAAGGATAACAT 59.827 45.455 21.23 3.70 44.36 2.71
269 270 3.389656 TGATCCCGTGCAAGGATAACATA 59.610 43.478 21.23 2.54 44.36 2.29
277 278 6.402550 CCGTGCAAGGATAACATAATGCTATC 60.403 42.308 14.14 0.00 34.97 2.08
278 279 6.369890 CGTGCAAGGATAACATAATGCTATCT 59.630 38.462 0.00 0.00 34.97 1.98
279 280 7.545615 CGTGCAAGGATAACATAATGCTATCTA 59.454 37.037 0.00 0.00 34.97 1.98
280 281 9.388506 GTGCAAGGATAACATAATGCTATCTAT 57.611 33.333 0.00 0.00 34.97 1.98
308 309 8.776376 AATGCAAATGGTTTGTTTCTATTAGG 57.224 30.769 0.00 0.00 42.56 2.69
310 311 8.410673 TGCAAATGGTTTGTTTCTATTAGGTA 57.589 30.769 4.56 0.00 42.56 3.08
335 336 5.634118 TGAGATTGAAGGTTGTTTCCTCAT 58.366 37.500 0.00 0.00 36.74 2.90
346 347 6.609616 AGGTTGTTTCCTCATACCTTTTTCAA 59.390 34.615 0.00 0.00 35.77 2.69
347 348 7.290014 AGGTTGTTTCCTCATACCTTTTTCAAT 59.710 33.333 0.00 0.00 35.77 2.57
348 349 7.931407 GGTTGTTTCCTCATACCTTTTTCAATT 59.069 33.333 0.00 0.00 0.00 2.32
367 368 7.873719 TCAATTCTTTGTCAAGTAAGTTGGA 57.126 32.000 0.00 0.00 36.71 3.53
368 369 7.930217 TCAATTCTTTGTCAAGTAAGTTGGAG 58.070 34.615 0.00 0.00 36.71 3.86
375 376 6.618287 TGTCAAGTAAGTTGGAGTTTCATG 57.382 37.500 0.00 0.00 36.71 3.07
376 377 5.530915 TGTCAAGTAAGTTGGAGTTTCATGG 59.469 40.000 0.00 0.00 36.71 3.66
394 395 4.102996 TCATGGATAGGCAGCATAGTTTGA 59.897 41.667 0.00 0.00 0.00 2.69
399 400 3.710209 AGGCAGCATAGTTTGACTTCT 57.290 42.857 0.00 0.00 0.00 2.85
401 402 4.764172 AGGCAGCATAGTTTGACTTCTAG 58.236 43.478 0.00 0.00 0.00 2.43
402 403 4.223923 AGGCAGCATAGTTTGACTTCTAGT 59.776 41.667 0.00 0.00 0.00 2.57
403 404 5.422331 AGGCAGCATAGTTTGACTTCTAGTA 59.578 40.000 0.00 0.00 0.00 1.82
404 405 6.070767 AGGCAGCATAGTTTGACTTCTAGTAA 60.071 38.462 0.00 0.00 0.00 2.24
405 406 6.763610 GGCAGCATAGTTTGACTTCTAGTAAT 59.236 38.462 0.00 0.00 0.00 1.89
433 434 5.940470 CCTTTGCTTGTAGAGTTACCTCATT 59.060 40.000 0.00 0.00 40.40 2.57
436 437 9.817809 CTTTGCTTGTAGAGTTACCTCATTATA 57.182 33.333 0.00 0.00 40.40 0.98
440 441 9.849166 GCTTGTAGAGTTACCTCATTATATCTC 57.151 37.037 0.00 0.00 40.40 2.75
469 470 4.818546 AGCTTGCATCTGTGGTTCATATAC 59.181 41.667 0.00 0.00 0.00 1.47
498 499 7.496263 GGAATAAAACTTACCCTTTTTGTGCAA 59.504 33.333 0.00 0.00 0.00 4.08
517 518 6.254281 TGCAAGGAAGCACTATTTTTACTC 57.746 37.500 0.00 0.00 40.11 2.59
525 526 7.255486 GGAAGCACTATTTTTACTCTGTGGTTT 60.255 37.037 9.19 0.00 43.15 3.27
530 531 8.402472 CACTATTTTTACTCTGTGGTTTGTCAA 58.598 33.333 0.00 0.00 0.00 3.18
539 540 4.576053 TCTGTGGTTTGTCAATTCTCTGTG 59.424 41.667 0.00 0.00 0.00 3.66
555 556 4.133820 CTCTGTGAAACCACAACCATGTA 58.866 43.478 0.00 0.00 43.23 2.29
569 570 5.104652 ACAACCATGTACTCCATAACTACCC 60.105 44.000 0.00 0.00 38.24 3.69
576 577 5.421056 TGTACTCCATAACTACCCTCTGTTG 59.579 44.000 0.00 0.00 0.00 3.33
584 585 5.422214 AACTACCCTCTGTTGTTAGGATG 57.578 43.478 0.00 0.00 40.41 3.51
602 603 6.647334 AGGATGATACATGTAGTCAGAGTG 57.353 41.667 11.91 0.00 0.00 3.51
616 649 3.511934 GTCAGAGTGTAGTGGACCAGAAT 59.488 47.826 0.00 0.00 0.00 2.40
617 650 3.511540 TCAGAGTGTAGTGGACCAGAATG 59.488 47.826 0.00 0.00 0.00 2.67
620 653 4.021016 AGAGTGTAGTGGACCAGAATGTTC 60.021 45.833 0.00 0.00 0.00 3.18
632 665 6.881602 GGACCAGAATGTTCTCTGTAGAAAAT 59.118 38.462 0.35 0.00 43.30 1.82
640 673 6.913170 TGTTCTCTGTAGAAAATCAATTGCC 58.087 36.000 0.00 0.00 43.30 4.52
641 674 5.801350 TCTCTGTAGAAAATCAATTGCCG 57.199 39.130 0.00 0.00 0.00 5.69
642 675 5.245531 TCTCTGTAGAAAATCAATTGCCGT 58.754 37.500 0.00 0.00 0.00 5.68
644 677 4.155826 TCTGTAGAAAATCAATTGCCGTGG 59.844 41.667 0.00 0.00 0.00 4.94
662 695 4.083324 CCGTGGGCAGTATAATTGCATAAG 60.083 45.833 11.35 3.77 43.28 1.73
702 774 6.065374 TCCCTGCATACTTTTAGTTTTGTCA 58.935 36.000 0.00 0.00 0.00 3.58
835 941 7.971722 TCAGTGAATTGATCTTTATGTTGCATG 59.028 33.333 0.00 0.00 0.00 4.06
867 989 7.443259 AATTTCAATCTTTCATTTTGCAGGG 57.557 32.000 0.00 0.00 0.00 4.45
939 1061 4.084485 GCGAGTTCCACTCTTAAACTTGTC 60.084 45.833 2.54 0.00 42.92 3.18
943 1065 5.104485 AGTTCCACTCTTAAACTTGTCCTGT 60.104 40.000 0.00 0.00 29.09 4.00
962 1084 0.106708 TGACTGAGGACCTTGTGTGC 59.893 55.000 0.00 0.00 35.12 4.57
963 1085 0.106708 GACTGAGGACCTTGTGTGCA 59.893 55.000 0.00 0.00 37.86 4.57
996 1118 3.668757 CGTGCATTGACATCTTCAGGTTG 60.669 47.826 0.00 0.00 34.94 3.77
1006 1128 4.219288 ACATCTTCAGGTTGAAAATGGAGC 59.781 41.667 9.24 0.00 38.71 4.70
1011 1133 0.898326 GGTTGAAAATGGAGCGGGGT 60.898 55.000 0.00 0.00 0.00 4.95
1014 1136 0.610785 TGAAAATGGAGCGGGGTTCC 60.611 55.000 0.00 0.00 33.44 3.62
1029 1151 2.427812 GGGTTCCGGTTCTTGTTTTCAA 59.572 45.455 0.00 0.00 38.21 2.69
1044 1166 4.058124 GTTTTCAAGGTGAGCCATTTTCC 58.942 43.478 0.00 0.00 37.19 3.13
1048 1170 0.040204 AGGTGAGCCATTTTCCCCTG 59.960 55.000 0.00 0.00 37.19 4.45
1056 1178 1.547372 CCATTTTCCCCTGCACAGAAG 59.453 52.381 0.00 0.00 0.00 2.85
1086 1208 9.929180 TTCATGCATATAATTAGACAGTACTCC 57.071 33.333 0.00 0.00 0.00 3.85
1087 1209 8.531982 TCATGCATATAATTAGACAGTACTCCC 58.468 37.037 0.00 0.00 0.00 4.30
1088 1210 8.535335 CATGCATATAATTAGACAGTACTCCCT 58.465 37.037 0.00 0.00 0.00 4.20
1089 1211 8.123639 TGCATATAATTAGACAGTACTCCCTC 57.876 38.462 0.00 0.00 0.00 4.30
1090 1212 7.178628 TGCATATAATTAGACAGTACTCCCTCC 59.821 40.741 0.00 0.00 0.00 4.30
1091 1213 7.628794 GCATATAATTAGACAGTACTCCCTCCG 60.629 44.444 0.00 0.00 0.00 4.63
1092 1214 3.666345 ATTAGACAGTACTCCCTCCGT 57.334 47.619 0.00 0.00 0.00 4.69
1093 1215 3.446442 TTAGACAGTACTCCCTCCGTT 57.554 47.619 0.00 0.00 0.00 4.44
1094 1216 1.836802 AGACAGTACTCCCTCCGTTC 58.163 55.000 0.00 0.00 0.00 3.95
1095 1217 1.355043 AGACAGTACTCCCTCCGTTCT 59.645 52.381 0.00 0.00 0.00 3.01
1096 1218 2.169330 GACAGTACTCCCTCCGTTCTT 58.831 52.381 0.00 0.00 0.00 2.52
1097 1219 3.009916 AGACAGTACTCCCTCCGTTCTTA 59.990 47.826 0.00 0.00 0.00 2.10
1098 1220 3.952967 GACAGTACTCCCTCCGTTCTTAT 59.047 47.826 0.00 0.00 0.00 1.73
1099 1221 5.104193 AGACAGTACTCCCTCCGTTCTTATA 60.104 44.000 0.00 0.00 0.00 0.98
1100 1222 5.703310 ACAGTACTCCCTCCGTTCTTATAT 58.297 41.667 0.00 0.00 0.00 0.86
1101 1223 6.134754 ACAGTACTCCCTCCGTTCTTATATT 58.865 40.000 0.00 0.00 0.00 1.28
1102 1224 6.610425 ACAGTACTCCCTCCGTTCTTATATTT 59.390 38.462 0.00 0.00 0.00 1.40
1103 1225 7.125356 ACAGTACTCCCTCCGTTCTTATATTTT 59.875 37.037 0.00 0.00 0.00 1.82
1104 1226 7.438459 CAGTACTCCCTCCGTTCTTATATTTTG 59.562 40.741 0.00 0.00 0.00 2.44
1105 1227 5.681639 ACTCCCTCCGTTCTTATATTTTGG 58.318 41.667 0.00 0.00 0.00 3.28
1106 1228 5.043737 TCCCTCCGTTCTTATATTTTGGG 57.956 43.478 0.00 0.00 0.00 4.12
1107 1229 4.722781 TCCCTCCGTTCTTATATTTTGGGA 59.277 41.667 0.00 0.00 37.65 4.37
1108 1230 4.820173 CCCTCCGTTCTTATATTTTGGGAC 59.180 45.833 0.00 0.00 33.14 4.46
1109 1231 4.510340 CCTCCGTTCTTATATTTTGGGACG 59.490 45.833 0.00 0.00 0.00 4.79
1110 1232 4.444536 TCCGTTCTTATATTTTGGGACGG 58.555 43.478 5.42 5.42 38.24 4.79
1111 1233 4.161942 TCCGTTCTTATATTTTGGGACGGA 59.838 41.667 9.86 9.86 42.60 4.69
1112 1234 4.510340 CCGTTCTTATATTTTGGGACGGAG 59.490 45.833 5.84 0.00 39.09 4.63
1113 1235 4.510340 CGTTCTTATATTTTGGGACGGAGG 59.490 45.833 0.00 0.00 0.00 4.30
1114 1236 4.699925 TCTTATATTTTGGGACGGAGGG 57.300 45.455 0.00 0.00 0.00 4.30
1121 1243 2.077687 TTGGGACGGAGGGAGTATAC 57.922 55.000 0.00 0.00 0.00 1.47
1129 1251 5.163332 GGACGGAGGGAGTATACTTGATTTT 60.163 44.000 6.88 0.00 0.00 1.82
1176 1298 1.228552 GCAGAAACTGAAGGGGGCA 60.229 57.895 2.81 0.00 32.44 5.36
1256 1378 5.013704 TGGAAGCTTCTTAAGGGTACATTCA 59.986 40.000 25.05 7.23 0.00 2.57
1270 1392 4.034510 GGTACATTCACTTCTGCTGCATAC 59.965 45.833 1.31 0.00 0.00 2.39
1271 1393 3.678289 ACATTCACTTCTGCTGCATACA 58.322 40.909 1.31 0.00 0.00 2.29
1277 1399 5.244755 TCACTTCTGCTGCATACAAATGTA 58.755 37.500 1.31 0.00 35.38 2.29
1288 1410 8.660373 GCTGCATACAAATGTATAATCTAGACC 58.340 37.037 5.78 0.00 39.06 3.85
1381 1503 8.451908 AAATACTTACATGGGAGCATTACTTC 57.548 34.615 0.00 0.00 0.00 3.01
1434 1556 2.093921 TGACTTTCCTCGACAACACACA 60.094 45.455 0.00 0.00 0.00 3.72
1435 1557 2.277084 ACTTTCCTCGACAACACACAC 58.723 47.619 0.00 0.00 0.00 3.82
1436 1558 2.276201 CTTTCCTCGACAACACACACA 58.724 47.619 0.00 0.00 0.00 3.72
1437 1559 1.647346 TTCCTCGACAACACACACAC 58.353 50.000 0.00 0.00 0.00 3.82
1438 1560 0.533032 TCCTCGACAACACACACACA 59.467 50.000 0.00 0.00 0.00 3.72
1439 1561 0.930310 CCTCGACAACACACACACAG 59.070 55.000 0.00 0.00 0.00 3.66
1480 1602 9.310449 TCTATAATGTTATGTTCTACTCCCTCC 57.690 37.037 0.00 0.00 0.00 4.30
1483 1605 4.091549 TGTTATGTTCTACTCCCTCCGTT 58.908 43.478 0.00 0.00 0.00 4.44
1484 1606 4.159135 TGTTATGTTCTACTCCCTCCGTTC 59.841 45.833 0.00 0.00 0.00 3.95
1485 1607 1.553706 TGTTCTACTCCCTCCGTTCC 58.446 55.000 0.00 0.00 0.00 3.62
1487 1609 2.309755 TGTTCTACTCCCTCCGTTCCTA 59.690 50.000 0.00 0.00 0.00 2.94
1488 1610 3.245371 TGTTCTACTCCCTCCGTTCCTAA 60.245 47.826 0.00 0.00 0.00 2.69
1489 1611 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
1496 1618 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
1498 1620 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
1501 1623 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
1506 1628 9.257651 CGTTCCTAAATATAAGTCTTTGTAGGG 57.742 37.037 0.00 0.00 0.00 3.53
1517 1639 7.510675 AAGTCTTTGTAGGGATTCCATTAGA 57.489 36.000 4.80 0.00 34.83 2.10
1534 1656 5.403246 CATTAGATGGACTACATACGGAGC 58.597 45.833 0.00 0.00 40.72 4.70
1535 1657 2.945456 AGATGGACTACATACGGAGCA 58.055 47.619 0.00 0.00 40.72 4.26
1539 1661 4.481368 TGGACTACATACGGAGCAAAAT 57.519 40.909 0.00 0.00 0.00 1.82
1540 1662 5.601583 TGGACTACATACGGAGCAAAATA 57.398 39.130 0.00 0.00 0.00 1.40
1541 1663 5.979993 TGGACTACATACGGAGCAAAATAA 58.020 37.500 0.00 0.00 0.00 1.40
1542 1664 6.408035 TGGACTACATACGGAGCAAAATAAA 58.592 36.000 0.00 0.00 0.00 1.40
1544 1666 7.011950 TGGACTACATACGGAGCAAAATAAATG 59.988 37.037 0.00 0.00 0.00 2.32
1545 1667 7.225931 GGACTACATACGGAGCAAAATAAATGA 59.774 37.037 0.00 0.00 0.00 2.57
1547 1669 9.120538 ACTACATACGGAGCAAAATAAATGAAT 57.879 29.630 0.00 0.00 0.00 2.57
1548 1670 9.599322 CTACATACGGAGCAAAATAAATGAATC 57.401 33.333 0.00 0.00 0.00 2.52
1549 1671 8.225603 ACATACGGAGCAAAATAAATGAATCT 57.774 30.769 0.00 0.00 0.00 2.40
1550 1672 9.337396 ACATACGGAGCAAAATAAATGAATCTA 57.663 29.630 0.00 0.00 0.00 1.98
1553 1675 8.911247 ACGGAGCAAAATAAATGAATCTAAAC 57.089 30.769 0.00 0.00 0.00 2.01
1554 1676 8.739972 ACGGAGCAAAATAAATGAATCTAAACT 58.260 29.630 0.00 0.00 0.00 2.66
1555 1677 9.573133 CGGAGCAAAATAAATGAATCTAAACTT 57.427 29.630 0.00 0.00 0.00 2.66
1578 1700 9.944376 ACTTAAAATGCATCTATATACATCCGT 57.056 29.630 0.00 0.00 0.00 4.69
1583 1705 8.877808 AATGCATCTATATACATCCGTATGTG 57.122 34.615 3.56 0.00 45.99 3.21
1584 1706 6.805713 TGCATCTATATACATCCGTATGTGG 58.194 40.000 3.56 0.00 45.99 4.17
1585 1707 6.379988 TGCATCTATATACATCCGTATGTGGT 59.620 38.462 3.56 0.00 45.99 4.16
1586 1708 7.093509 TGCATCTATATACATCCGTATGTGGTT 60.094 37.037 3.56 0.00 45.99 3.67
1587 1709 7.435488 GCATCTATATACATCCGTATGTGGTTC 59.565 40.741 3.56 0.00 45.99 3.62
1588 1710 8.466798 CATCTATATACATCCGTATGTGGTTCA 58.533 37.037 3.56 0.00 45.99 3.18
1589 1711 8.589701 TCTATATACATCCGTATGTGGTTCAT 57.410 34.615 3.56 0.00 45.99 2.57
1590 1712 9.689501 TCTATATACATCCGTATGTGGTTCATA 57.310 33.333 3.56 0.00 45.99 2.15
1591 1713 9.952188 CTATATACATCCGTATGTGGTTCATAG 57.048 37.037 3.56 0.80 45.99 2.23
1592 1714 6.665992 ATACATCCGTATGTGGTTCATAGT 57.334 37.500 3.56 0.00 45.99 2.12
1593 1715 4.693283 ACATCCGTATGTGGTTCATAGTG 58.307 43.478 0.00 0.00 44.79 2.74
1594 1716 3.812156 TCCGTATGTGGTTCATAGTGG 57.188 47.619 0.00 0.00 39.36 4.00
1595 1717 3.367321 TCCGTATGTGGTTCATAGTGGA 58.633 45.455 0.00 0.00 39.94 4.02
1596 1718 3.770388 TCCGTATGTGGTTCATAGTGGAA 59.230 43.478 0.00 0.00 39.60 3.53
1597 1719 4.407621 TCCGTATGTGGTTCATAGTGGAAT 59.592 41.667 0.00 0.00 39.60 3.01
1598 1720 4.750098 CCGTATGTGGTTCATAGTGGAATC 59.250 45.833 0.00 0.00 39.36 2.52
1599 1721 5.453339 CCGTATGTGGTTCATAGTGGAATCT 60.453 44.000 0.00 0.00 39.36 2.40
1600 1722 5.692204 CGTATGTGGTTCATAGTGGAATCTC 59.308 44.000 0.00 0.00 39.36 2.75
1601 1723 5.965033 ATGTGGTTCATAGTGGAATCTCT 57.035 39.130 0.00 0.00 34.67 3.10
1602 1724 7.255486 CGTATGTGGTTCATAGTGGAATCTCTA 60.255 40.741 0.00 0.00 39.36 2.43
1603 1725 6.222038 TGTGGTTCATAGTGGAATCTCTAC 57.778 41.667 0.00 0.00 0.00 2.59
1604 1726 5.719563 TGTGGTTCATAGTGGAATCTCTACA 59.280 40.000 0.00 0.00 29.47 2.74
1605 1727 6.212589 TGTGGTTCATAGTGGAATCTCTACAA 59.787 38.462 0.00 0.00 29.47 2.41
1606 1728 7.103641 GTGGTTCATAGTGGAATCTCTACAAA 58.896 38.462 0.00 0.00 29.47 2.83
1607 1729 7.278868 GTGGTTCATAGTGGAATCTCTACAAAG 59.721 40.741 0.00 0.00 29.47 2.77
1608 1730 7.180229 TGGTTCATAGTGGAATCTCTACAAAGA 59.820 37.037 0.00 0.00 29.47 2.52
1609 1731 7.492994 GGTTCATAGTGGAATCTCTACAAAGAC 59.507 40.741 0.00 0.00 29.47 3.01
1610 1732 7.962995 TCATAGTGGAATCTCTACAAAGACT 57.037 36.000 0.00 0.00 29.47 3.24
1611 1733 8.367660 TCATAGTGGAATCTCTACAAAGACTT 57.632 34.615 0.00 0.00 29.47 3.01
1612 1734 9.475620 TCATAGTGGAATCTCTACAAAGACTTA 57.524 33.333 0.00 0.00 29.47 2.24
1613 1735 9.522804 CATAGTGGAATCTCTACAAAGACTTAC 57.477 37.037 0.00 0.00 29.47 2.34
1614 1736 7.540474 AGTGGAATCTCTACAAAGACTTACA 57.460 36.000 0.00 0.00 29.47 2.41
1615 1737 8.140112 AGTGGAATCTCTACAAAGACTTACAT 57.860 34.615 0.00 0.00 29.47 2.29
1616 1738 8.598041 AGTGGAATCTCTACAAAGACTTACATT 58.402 33.333 0.00 0.00 29.47 2.71
1617 1739 9.220767 GTGGAATCTCTACAAAGACTTACATTT 57.779 33.333 0.00 0.00 0.00 2.32
1623 1745 9.924650 TCTCTACAAAGACTTACATTTAGGAAC 57.075 33.333 0.00 0.00 0.00 3.62
1624 1746 8.752766 TCTACAAAGACTTACATTTAGGAACG 57.247 34.615 0.00 0.00 0.00 3.95
1625 1747 6.796705 ACAAAGACTTACATTTAGGAACGG 57.203 37.500 0.00 0.00 0.00 4.44
1676 1798 5.423015 ACATGATAGTCACAAGGTGATGAC 58.577 41.667 0.00 0.00 44.63 3.06
1677 1799 4.471904 TGATAGTCACAAGGTGATGACC 57.528 45.455 2.02 0.00 44.63 4.02
1681 1803 3.679389 AGTCACAAGGTGATGACCATTC 58.321 45.455 3.51 0.00 44.63 2.67
1683 1805 2.094675 CACAAGGTGATGACCATTCCC 58.905 52.381 3.51 0.00 45.98 3.97
1686 1808 0.257039 AGGTGATGACCATTCCCAGC 59.743 55.000 3.51 0.00 45.98 4.85
1720 1843 8.360390 CCAATACAAGTGCACTATGATACTAGA 58.640 37.037 22.01 0.00 0.00 2.43
1725 1848 8.140628 ACAAGTGCACTATGATACTAGAGATTG 58.859 37.037 22.01 10.97 0.00 2.67
1747 1870 5.937111 TGTAGGAAACTAGCTGAGGTTTTT 58.063 37.500 12.94 8.93 45.49 1.94
1865 1988 7.274250 GCTAAAAGTAAGATTTCATTGCAGGTG 59.726 37.037 0.00 0.00 0.00 4.00
1868 1991 6.743575 AGTAAGATTTCATTGCAGGTGTAC 57.256 37.500 0.00 0.00 0.00 2.90
1903 2026 6.127897 GGCTTGTATTGGTATTGATATGGCTC 60.128 42.308 0.00 0.00 0.00 4.70
1936 2059 2.291465 GCATGTTCTGTCTCAGCAAACA 59.709 45.455 0.00 6.52 0.00 2.83
1943 2066 3.374988 TCTGTCTCAGCAAACAACACTTG 59.625 43.478 0.00 0.00 0.00 3.16
2005 2128 5.475220 TGGTCTCTTTGATCCGATAGAGATC 59.525 44.000 11.03 11.02 43.44 2.75
2008 2131 6.429692 GTCTCTTTGATCCGATAGAGATCTCA 59.570 42.308 24.39 10.95 43.44 3.27
2038 2161 1.354368 CTCCCACACAATACCAACCCT 59.646 52.381 0.00 0.00 0.00 4.34
2065 2188 2.279741 CCACTGTCACCAATGTATCCG 58.720 52.381 0.00 0.00 0.00 4.18
2104 2227 3.292460 TCCGGTTTTGACTGGAAAATGT 58.708 40.909 0.00 0.00 41.84 2.71
2110 2233 6.514212 CGGTTTTGACTGGAAAATGTCATGTA 60.514 38.462 0.00 0.00 41.93 2.29
2119 2242 7.926018 ACTGGAAAATGTCATGTAAACTTTTCC 59.074 33.333 20.80 20.80 45.99 3.13
2122 2245 8.764287 GGAAAATGTCATGTAAACTTTTCCAAG 58.236 33.333 21.70 0.00 45.50 3.61
2134 2257 9.399403 GTAAACTTTTCCAAGCTCTCTTTTATG 57.601 33.333 0.00 0.00 32.57 1.90
2218 2341 4.594062 TGTTGTCCCCAAGTTAGTAGCTTA 59.406 41.667 0.00 0.00 0.00 3.09
2396 2519 3.582647 TCTTACTGATGCTTCTTGTCCCA 59.417 43.478 0.88 0.00 0.00 4.37
2467 2590 4.546637 GCATGCAGCAGTGTTGAC 57.453 55.556 14.21 3.00 44.79 3.18
2561 2684 0.598065 GGCAAGCATGTTCGGAAGTT 59.402 50.000 0.00 0.00 0.00 2.66
2565 2688 3.181516 GCAAGCATGTTCGGAAGTTCTAG 60.182 47.826 2.25 0.00 0.00 2.43
2594 2717 0.947244 GAGTGCGGCTGGGATTAATG 59.053 55.000 0.00 0.00 0.00 1.90
2599 2722 1.392589 CGGCTGGGATTAATGCTGTT 58.607 50.000 6.93 0.00 0.00 3.16
2632 2755 2.474410 GGGTGGTTCACTCCTACTTG 57.526 55.000 0.00 0.00 34.40 3.16
2723 2846 8.964420 CAAAGGTATACAACTTTTGGTACATG 57.036 34.615 5.01 0.00 46.21 3.21
2724 2847 6.753107 AGGTATACAACTTTTGGTACATGC 57.247 37.500 5.01 0.00 39.30 4.06
2893 3057 4.516698 TGGAAATTCTGAGTCTTGTTCTGC 59.483 41.667 0.00 0.00 0.00 4.26
2919 3083 0.034059 CAGTCTGTCCGCTGGAGTTT 59.966 55.000 0.00 0.00 29.39 2.66
2962 3126 2.797837 GCATGTGGCAAGGCATCTA 58.202 52.632 0.00 0.00 43.97 1.98
2980 3144 1.026182 TACAAGGCCTTCATGCTGCG 61.026 55.000 17.29 4.11 0.00 5.18
3004 3168 2.697363 CGTTGCAATCTTACATCGCAG 58.303 47.619 0.59 0.00 33.48 5.18
3105 3269 4.278419 GCTGGTGTGGGGAATGATATTTAC 59.722 45.833 0.00 0.00 0.00 2.01
3268 3529 0.251165 TGGGCAGCAAGGTTAGTTCC 60.251 55.000 0.00 0.00 0.00 3.62
3272 3534 2.504367 GCAGCAAGGTTAGTTCCTTCA 58.496 47.619 0.00 0.00 44.87 3.02
3276 3538 5.006386 CAGCAAGGTTAGTTCCTTCAATCT 58.994 41.667 0.00 0.00 44.87 2.40
3308 3570 7.062957 TCTGGTTCATCATAGATCTGTACTCA 58.937 38.462 5.18 0.00 0.00 3.41
3383 3728 5.985911 AGCTTACCTACGGACATTGTATTT 58.014 37.500 0.00 0.00 0.00 1.40
3425 3770 4.997395 AGCTTTACGTGTGATTTGAGTGAT 59.003 37.500 0.00 0.00 0.00 3.06
3446 3791 1.457823 ATATTGCAGCACCATGGCCG 61.458 55.000 13.04 4.23 0.00 6.13
3476 3821 2.488545 GTCTCTCCAGTCTTTGTCGCTA 59.511 50.000 0.00 0.00 0.00 4.26
3496 3841 1.915769 GTGCTCCAGGTGAGAGGGT 60.916 63.158 0.00 0.00 44.42 4.34
3518 3863 8.357402 AGGGTACTCACAAATATGTTTTGAAAC 58.643 33.333 0.00 0.00 37.82 2.78
3530 3875 2.069465 TTTGAAACGCATGCGGCACT 62.069 50.000 39.95 22.75 45.17 4.40
3554 3899 8.157476 ACTAAGAAATAAGAGAACTTCCTTGCA 58.843 33.333 0.00 0.00 37.53 4.08
3577 3922 7.496704 CAACTGTGCATGTATTGACAATAAC 57.503 36.000 9.47 4.99 39.59 1.89
3623 3971 1.095228 ATTGCCTGCATTACCGGTCG 61.095 55.000 12.40 1.40 0.00 4.79
3669 4017 1.803519 CAACAGTCTCTCGCTCGCC 60.804 63.158 0.00 0.00 0.00 5.54
3678 4026 1.213013 CTCGCTCGCCAGTACAACT 59.787 57.895 0.00 0.00 0.00 3.16
3679 4027 0.450583 CTCGCTCGCCAGTACAACTA 59.549 55.000 0.00 0.00 0.00 2.24
3933 4282 4.289672 TGTAAATGAGCCTTTCCCTTCTCT 59.710 41.667 0.00 0.00 0.00 3.10
3934 4283 3.362870 AATGAGCCTTTCCCTTCTCTG 57.637 47.619 0.00 0.00 0.00 3.35
3935 4284 1.734655 TGAGCCTTTCCCTTCTCTGT 58.265 50.000 0.00 0.00 0.00 3.41
3936 4285 1.625818 TGAGCCTTTCCCTTCTCTGTC 59.374 52.381 0.00 0.00 0.00 3.51
3985 4335 0.458716 GTGCTAGAGAGGACCGTTGC 60.459 60.000 0.00 0.00 38.05 4.17
3996 4346 0.310854 GACCGTTGCACCTTTTGAGG 59.689 55.000 0.00 0.00 0.00 3.86
4039 4390 2.303022 CTCCTAGACTTTGGCTGGTCAA 59.697 50.000 0.00 0.00 35.18 3.18
4040 4391 2.303022 TCCTAGACTTTGGCTGGTCAAG 59.697 50.000 0.00 0.00 35.18 3.02
4073 4424 1.061131 CGATTTGCGACAGTGGATGAC 59.939 52.381 0.00 0.00 44.57 3.06
4105 4456 5.607939 ATTGGTATGGTTGTCGATACTCA 57.392 39.130 0.00 0.00 36.16 3.41
4113 4464 4.202151 TGGTTGTCGATACTCAGGATCATG 60.202 45.833 0.00 0.00 0.00 3.07
4157 4508 4.216257 TGCCTCTAAATTTTCAGTGAGCAC 59.784 41.667 0.00 0.00 0.00 4.40
4178 4529 6.598064 AGCACACTGAAGTACAACTAAAAACT 59.402 34.615 0.00 0.00 0.00 2.66
4202 4553 9.700831 ACTGATAAAATTTGCTAAATACTCCCT 57.299 29.630 0.00 0.00 0.00 4.20
4206 4557 9.700831 ATAAAATTTGCTAAATACTCCCTCTGT 57.299 29.630 0.00 0.00 0.00 3.41
4207 4558 8.422577 AAAATTTGCTAAATACTCCCTCTGTT 57.577 30.769 0.00 0.00 0.00 3.16
4208 4559 7.396540 AATTTGCTAAATACTCCCTCTGTTG 57.603 36.000 0.00 0.00 0.00 3.33
4209 4560 4.487714 TGCTAAATACTCCCTCTGTTGG 57.512 45.455 0.00 0.00 0.00 3.77
4210 4561 4.101114 TGCTAAATACTCCCTCTGTTGGA 58.899 43.478 0.00 0.00 0.00 3.53
4211 4562 4.534500 TGCTAAATACTCCCTCTGTTGGAA 59.466 41.667 0.00 0.00 0.00 3.53
4212 4563 5.013704 TGCTAAATACTCCCTCTGTTGGAAA 59.986 40.000 0.00 0.00 0.00 3.13
4214 4565 6.433093 GCTAAATACTCCCTCTGTTGGAAAAA 59.567 38.462 0.00 0.00 0.00 1.94
4215 4566 6.901081 AAATACTCCCTCTGTTGGAAAAAG 57.099 37.500 0.00 0.00 30.26 2.27
4216 4567 2.587522 ACTCCCTCTGTTGGAAAAAGC 58.412 47.619 0.00 0.00 28.69 3.51
4217 4568 2.175715 ACTCCCTCTGTTGGAAAAAGCT 59.824 45.455 0.00 0.00 28.69 3.74
4218 4569 3.225940 CTCCCTCTGTTGGAAAAAGCTT 58.774 45.455 0.00 0.00 28.69 3.74
4219 4570 2.958355 TCCCTCTGTTGGAAAAAGCTTG 59.042 45.455 0.00 0.00 28.69 4.01
4220 4571 2.036346 CCCTCTGTTGGAAAAAGCTTGG 59.964 50.000 0.00 0.00 28.69 3.61
4221 4572 2.546584 CCTCTGTTGGAAAAAGCTTGGC 60.547 50.000 0.00 0.00 28.69 4.52
4222 4573 1.412343 TCTGTTGGAAAAAGCTTGGCC 59.588 47.619 0.00 0.00 28.69 5.36
4223 4574 0.467804 TGTTGGAAAAAGCTTGGCCC 59.532 50.000 0.00 1.77 0.00 5.80
4224 4575 0.467804 GTTGGAAAAAGCTTGGCCCA 59.532 50.000 0.00 4.72 0.00 5.36
4225 4576 1.134250 GTTGGAAAAAGCTTGGCCCAA 60.134 47.619 17.56 17.56 0.00 4.12
4226 4577 0.758123 TGGAAAAAGCTTGGCCCAAG 59.242 50.000 19.47 19.47 43.57 3.61
4233 4584 3.369921 CTTGGCCCAAGCTTGTCC 58.630 61.111 24.35 22.77 39.73 4.02
4234 4585 1.228675 CTTGGCCCAAGCTTGTCCT 60.229 57.895 24.35 0.00 39.73 3.85
4235 4586 0.829182 CTTGGCCCAAGCTTGTCCTT 60.829 55.000 24.35 0.00 39.73 3.36
4236 4587 0.827507 TTGGCCCAAGCTTGTCCTTC 60.828 55.000 24.35 9.96 39.73 3.46
4237 4588 1.228552 GGCCCAAGCTTGTCCTTCA 60.229 57.895 24.35 0.00 39.73 3.02
4238 4589 0.827507 GGCCCAAGCTTGTCCTTCAA 60.828 55.000 24.35 0.00 39.73 2.69
4239 4590 1.039856 GCCCAAGCTTGTCCTTCAAA 58.960 50.000 24.35 0.00 35.48 2.69
4243 4594 2.892852 CCAAGCTTGTCCTTCAAATGGA 59.107 45.455 24.35 0.00 36.92 3.41
4244 4595 3.512724 CCAAGCTTGTCCTTCAAATGGAT 59.487 43.478 24.35 0.00 36.92 3.41
4245 4596 4.491676 CAAGCTTGTCCTTCAAATGGATG 58.508 43.478 18.65 0.00 35.87 3.51
4246 4597 3.771216 AGCTTGTCCTTCAAATGGATGT 58.229 40.909 0.00 0.00 35.87 3.06
4247 4598 4.922206 AGCTTGTCCTTCAAATGGATGTA 58.078 39.130 0.00 0.00 35.87 2.29
4248 4599 5.513233 AGCTTGTCCTTCAAATGGATGTAT 58.487 37.500 0.00 0.00 35.87 2.29
4249 4600 5.591877 AGCTTGTCCTTCAAATGGATGTATC 59.408 40.000 0.00 0.00 35.87 2.24
4250 4601 5.591877 GCTTGTCCTTCAAATGGATGTATCT 59.408 40.000 0.00 0.00 35.87 1.98
4251 4602 6.767902 GCTTGTCCTTCAAATGGATGTATCTA 59.232 38.462 0.00 0.00 35.87 1.98
4252 4603 7.041508 GCTTGTCCTTCAAATGGATGTATCTAG 60.042 40.741 0.00 0.00 35.87 2.43
4253 4604 6.291377 TGTCCTTCAAATGGATGTATCTAGC 58.709 40.000 0.00 0.00 35.87 3.42
4254 4605 6.126796 TGTCCTTCAAATGGATGTATCTAGCA 60.127 38.462 0.00 0.00 35.87 3.49
4255 4606 6.203723 GTCCTTCAAATGGATGTATCTAGCAC 59.796 42.308 0.00 0.00 35.87 4.40
4257 4608 7.290014 TCCTTCAAATGGATGTATCTAGCACTA 59.710 37.037 0.00 0.00 0.00 2.74
4258 4609 7.933577 CCTTCAAATGGATGTATCTAGCACTAA 59.066 37.037 0.00 0.00 0.00 2.24
4260 4611 8.023021 TCAAATGGATGTATCTAGCACTAACT 57.977 34.615 0.00 0.00 0.00 2.24
4261 4612 8.486210 TCAAATGGATGTATCTAGCACTAACTT 58.514 33.333 0.00 0.00 0.00 2.66
4262 4613 8.554528 CAAATGGATGTATCTAGCACTAACTTG 58.445 37.037 0.00 0.00 0.00 3.16
4266 4634 6.367422 GGATGTATCTAGCACTAACTTGATGC 59.633 42.308 0.00 0.00 39.74 3.91
4278 4646 7.665690 CACTAACTTGATGCTAGATACTGGAT 58.334 38.462 0.00 0.00 0.00 3.41
4279 4647 8.797438 CACTAACTTGATGCTAGATACTGGATA 58.203 37.037 0.00 0.00 0.00 2.59
4298 4666 6.773976 GGATACATCCATTTGAAGGACAAA 57.226 37.500 3.26 0.00 46.38 2.83
4299 4667 6.564328 GGATACATCCATTTGAAGGACAAAC 58.436 40.000 3.26 0.00 46.38 2.93
4300 4668 6.378280 GGATACATCCATTTGAAGGACAAACT 59.622 38.462 3.26 0.00 46.38 2.66
4301 4669 7.093771 GGATACATCCATTTGAAGGACAAACTT 60.094 37.037 3.26 0.00 46.38 2.66
4310 4678 5.229921 TGAAGGACAAACTTTTTCAGACG 57.770 39.130 0.00 0.00 0.00 4.18
4311 4679 4.095782 TGAAGGACAAACTTTTTCAGACGG 59.904 41.667 0.00 0.00 0.00 4.79
4312 4680 3.881220 AGGACAAACTTTTTCAGACGGA 58.119 40.909 0.00 0.00 0.00 4.69
4313 4681 3.877508 AGGACAAACTTTTTCAGACGGAG 59.122 43.478 0.00 0.00 0.00 4.63
4391 4771 3.375299 CCAGAGCTTGCACTACCAAATAC 59.625 47.826 0.00 0.00 0.00 1.89
4393 4773 3.009033 AGAGCTTGCACTACCAAATACCA 59.991 43.478 0.00 0.00 0.00 3.25
4398 4778 5.737635 GCTTGCACTACCAAATACCACAAAA 60.738 40.000 0.00 0.00 0.00 2.44
4400 4780 4.038162 TGCACTACCAAATACCACAAAACC 59.962 41.667 0.00 0.00 0.00 3.27
4441 4821 8.456471 TGAGAGTAATTGCAGATTGAAGAATTG 58.544 33.333 0.00 0.00 0.00 2.32
4447 4827 5.970317 TGCAGATTGAAGAATTGACACAT 57.030 34.783 0.00 0.00 0.00 3.21
4545 8575 0.736053 TTCTTGTGAACCGTTGCACC 59.264 50.000 0.00 0.00 34.19 5.01
4592 8622 4.142381 GGATTGTTTACTGGAACTCATGGC 60.142 45.833 0.00 0.00 0.00 4.40
4598 8628 0.606401 CTGGAACTCATGGCGGTGTT 60.606 55.000 0.00 0.00 0.00 3.32
4765 8801 7.882271 AGCTATCTCTTTCATTCAAGTCAGTTT 59.118 33.333 0.00 0.00 0.00 2.66
4778 8814 5.189736 TCAAGTCAGTTTGGGCAGAGTATAT 59.810 40.000 0.00 0.00 0.00 0.86
4779 8815 5.028549 AGTCAGTTTGGGCAGAGTATATG 57.971 43.478 0.00 0.00 0.00 1.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.845809 GAATCCCACGCATCCATCGC 61.846 60.000 0.00 0.00 0.00 4.58
10 11 1.153369 CTCCACGAATCCCACGCAT 60.153 57.895 0.00 0.00 0.00 4.73
17 18 1.537135 GCTGTCTAGCTCCACGAATCC 60.537 57.143 0.00 0.00 46.57 3.01
34 35 2.471818 CAGCATGAGTACAGCTAGCTG 58.528 52.381 37.27 37.27 44.48 4.24
35 36 1.411977 CCAGCATGAGTACAGCTAGCT 59.588 52.381 12.68 12.68 39.69 3.32
36 37 1.137872 ACCAGCATGAGTACAGCTAGC 59.862 52.381 6.62 6.62 39.69 3.42
37 38 2.542618 CGACCAGCATGAGTACAGCTAG 60.543 54.545 0.00 0.00 39.69 3.42
44 45 1.557099 AGAACCGACCAGCATGAGTA 58.443 50.000 0.00 0.00 39.69 2.59
86 87 5.123820 TGCTTGAGCTACACAATATGGAAAC 59.876 40.000 4.44 0.00 42.66 2.78
87 88 5.252547 TGCTTGAGCTACACAATATGGAAA 58.747 37.500 4.44 0.00 42.66 3.13
115 116 1.656095 GATAAGCAGACGACAGCACAC 59.344 52.381 5.01 0.00 0.00 3.82
120 121 5.349817 ACAAAGAATGATAAGCAGACGACAG 59.650 40.000 0.00 0.00 0.00 3.51
122 123 5.120830 ACACAAAGAATGATAAGCAGACGAC 59.879 40.000 0.00 0.00 0.00 4.34
123 124 5.237815 ACACAAAGAATGATAAGCAGACGA 58.762 37.500 0.00 0.00 0.00 4.20
124 125 5.536554 ACACAAAGAATGATAAGCAGACG 57.463 39.130 0.00 0.00 0.00 4.18
125 126 5.570589 GCAACACAAAGAATGATAAGCAGAC 59.429 40.000 0.00 0.00 0.00 3.51
135 136 3.508793 AGGATCCAGCAACACAAAGAATG 59.491 43.478 15.82 0.00 0.00 2.67
141 142 1.699083 TCTGAGGATCCAGCAACACAA 59.301 47.619 15.82 0.00 34.28 3.33
147 148 1.198713 GAACCTCTGAGGATCCAGCA 58.801 55.000 29.71 10.78 37.67 4.41
152 153 2.679349 GCACAAGGAACCTCTGAGGATC 60.679 54.545 29.71 25.52 37.67 3.36
153 154 1.280421 GCACAAGGAACCTCTGAGGAT 59.720 52.381 29.71 18.82 37.67 3.24
154 155 0.687354 GCACAAGGAACCTCTGAGGA 59.313 55.000 29.71 0.00 37.67 3.71
155 156 0.397941 TGCACAAGGAACCTCTGAGG 59.602 55.000 22.00 22.00 42.49 3.86
156 157 2.260844 TTGCACAAGGAACCTCTGAG 57.739 50.000 0.00 0.00 0.00 3.35
157 158 2.783135 GATTGCACAAGGAACCTCTGA 58.217 47.619 0.00 0.00 0.00 3.27
158 159 1.466167 CGATTGCACAAGGAACCTCTG 59.534 52.381 0.00 0.00 0.00 3.35
159 160 1.611673 CCGATTGCACAAGGAACCTCT 60.612 52.381 0.00 0.00 0.00 3.69
160 161 0.804989 CCGATTGCACAAGGAACCTC 59.195 55.000 0.00 0.00 0.00 3.85
161 162 1.244019 GCCGATTGCACAAGGAACCT 61.244 55.000 4.84 0.00 40.77 3.50
162 163 1.212751 GCCGATTGCACAAGGAACC 59.787 57.895 4.84 0.00 40.77 3.62
163 164 4.868195 GCCGATTGCACAAGGAAC 57.132 55.556 4.84 0.00 40.77 3.62
192 193 7.129109 TGTTACGAAATTCCAAGAACATCTC 57.871 36.000 0.00 0.00 0.00 2.75
202 203 7.658167 TCAATAGTCTGTTGTTACGAAATTCCA 59.342 33.333 8.94 0.00 0.00 3.53
203 204 8.025243 TCAATAGTCTGTTGTTACGAAATTCC 57.975 34.615 8.94 0.00 0.00 3.01
234 235 7.581213 TGCACGGGATCAATCTTAAAAATAT 57.419 32.000 0.00 0.00 0.00 1.28
235 236 7.397892 TTGCACGGGATCAATCTTAAAAATA 57.602 32.000 0.00 0.00 0.00 1.40
236 237 5.913137 TGCACGGGATCAATCTTAAAAAT 57.087 34.783 0.00 0.00 0.00 1.82
237 238 5.336372 CCTTGCACGGGATCAATCTTAAAAA 60.336 40.000 0.07 0.00 0.00 1.94
241 242 2.503765 TCCTTGCACGGGATCAATCTTA 59.496 45.455 9.71 0.00 0.00 2.10
251 252 3.304659 GCATTATGTTATCCTTGCACGGG 60.305 47.826 9.71 3.87 0.00 5.28
253 254 4.818534 AGCATTATGTTATCCTTGCACG 57.181 40.909 0.00 0.00 32.66 5.34
286 287 9.869757 AATACCTAATAGAAACAAACCATTTGC 57.130 29.630 1.23 0.00 44.39 3.68
303 304 9.533831 AAACAACCTTCAATCTCAATACCTAAT 57.466 29.630 0.00 0.00 0.00 1.73
305 306 7.610305 GGAAACAACCTTCAATCTCAATACCTA 59.390 37.037 0.00 0.00 0.00 3.08
306 307 6.434340 GGAAACAACCTTCAATCTCAATACCT 59.566 38.462 0.00 0.00 0.00 3.08
308 309 7.174946 TGAGGAAACAACCTTCAATCTCAATAC 59.825 37.037 0.00 0.00 40.73 1.89
310 311 6.070656 TGAGGAAACAACCTTCAATCTCAAT 58.929 36.000 0.00 0.00 40.73 2.57
323 324 8.887036 AATTGAAAAAGGTATGAGGAAACAAC 57.113 30.769 0.00 0.00 0.00 3.32
346 347 7.881775 AACTCCAACTTACTTGACAAAGAAT 57.118 32.000 0.00 0.00 36.84 2.40
347 348 7.392113 TGAAACTCCAACTTACTTGACAAAGAA 59.608 33.333 0.00 0.00 36.84 2.52
348 349 6.882140 TGAAACTCCAACTTACTTGACAAAGA 59.118 34.615 0.00 0.00 36.84 2.52
360 361 4.263905 TGCCTATCCATGAAACTCCAACTT 60.264 41.667 0.00 0.00 0.00 2.66
367 368 3.589951 ATGCTGCCTATCCATGAAACT 57.410 42.857 0.00 0.00 0.00 2.66
368 369 4.392940 ACTATGCTGCCTATCCATGAAAC 58.607 43.478 0.00 0.00 0.00 2.78
375 376 4.078639 AGTCAAACTATGCTGCCTATCC 57.921 45.455 0.00 0.00 0.00 2.59
376 377 5.363939 AGAAGTCAAACTATGCTGCCTATC 58.636 41.667 0.00 0.00 0.00 2.08
394 395 5.763876 AGCAAAGGGACATTACTAGAAGT 57.236 39.130 0.00 0.00 0.00 3.01
399 400 6.212791 ACTCTACAAGCAAAGGGACATTACTA 59.787 38.462 0.00 0.00 0.00 1.82
401 402 5.246307 ACTCTACAAGCAAAGGGACATTAC 58.754 41.667 0.00 0.00 0.00 1.89
402 403 5.499004 ACTCTACAAGCAAAGGGACATTA 57.501 39.130 0.00 0.00 0.00 1.90
403 404 4.373156 ACTCTACAAGCAAAGGGACATT 57.627 40.909 0.00 0.00 0.00 2.71
404 405 4.373156 AACTCTACAAGCAAAGGGACAT 57.627 40.909 0.00 0.00 0.00 3.06
405 406 3.857157 AACTCTACAAGCAAAGGGACA 57.143 42.857 0.00 0.00 0.00 4.02
433 434 7.226128 CACAGATGCAAGCTTCTTTGAGATATA 59.774 37.037 15.11 0.00 32.86 0.86
436 437 4.156190 CACAGATGCAAGCTTCTTTGAGAT 59.844 41.667 15.11 0.00 32.86 2.75
440 441 2.295349 ACCACAGATGCAAGCTTCTTTG 59.705 45.455 13.89 13.89 31.70 2.77
442 443 2.283145 ACCACAGATGCAAGCTTCTT 57.717 45.000 7.63 0.00 0.00 2.52
446 447 2.211250 ATGAACCACAGATGCAAGCT 57.789 45.000 0.00 0.00 0.00 3.74
447 448 4.576053 TGTATATGAACCACAGATGCAAGC 59.424 41.667 0.00 0.00 39.16 4.01
469 470 9.040939 CACAAAAAGGGTAAGTTTTATTCCTTG 57.959 33.333 0.00 0.00 35.13 3.61
498 499 5.940470 CCACAGAGTAAAAATAGTGCTTCCT 59.060 40.000 0.00 0.00 0.00 3.36
517 518 4.576053 TCACAGAGAATTGACAAACCACAG 59.424 41.667 0.00 0.00 0.00 3.66
539 540 3.482436 TGGAGTACATGGTTGTGGTTTC 58.518 45.455 0.00 0.00 36.53 2.78
555 556 4.426704 ACAACAGAGGGTAGTTATGGAGT 58.573 43.478 0.00 0.00 0.00 3.85
569 570 8.417106 ACTACATGTATCATCCTAACAACAGAG 58.583 37.037 5.91 0.00 0.00 3.35
576 577 8.079203 CACTCTGACTACATGTATCATCCTAAC 58.921 40.741 5.91 0.00 0.00 2.34
584 585 6.542735 TCCACTACACTCTGACTACATGTATC 59.457 42.308 5.91 7.12 0.00 2.24
602 603 4.499183 CAGAGAACATTCTGGTCCACTAC 58.501 47.826 0.00 0.00 40.69 2.73
616 649 6.348458 CGGCAATTGATTTTCTACAGAGAACA 60.348 38.462 10.34 0.00 41.52 3.18
617 650 6.024049 CGGCAATTGATTTTCTACAGAGAAC 58.976 40.000 10.34 0.00 41.52 3.01
620 653 5.327091 CACGGCAATTGATTTTCTACAGAG 58.673 41.667 10.34 0.00 0.00 3.35
640 673 4.754618 TCTTATGCAATTATACTGCCCACG 59.245 41.667 0.00 0.00 39.13 4.94
641 674 6.263168 AGTTCTTATGCAATTATACTGCCCAC 59.737 38.462 0.00 0.00 39.13 4.61
642 675 6.364701 AGTTCTTATGCAATTATACTGCCCA 58.635 36.000 0.00 0.00 39.13 5.36
644 677 7.229506 AGGAAGTTCTTATGCAATTATACTGCC 59.770 37.037 2.25 9.52 39.13 4.85
650 683 9.553064 CTGAGTAGGAAGTTCTTATGCAATTAT 57.447 33.333 2.25 0.00 0.00 1.28
765 837 2.706890 CGTGGGTGCATAAAGTTACCT 58.293 47.619 0.00 0.00 33.71 3.08
767 839 2.081462 AGCGTGGGTGCATAAAGTTAC 58.919 47.619 0.00 0.00 37.31 2.50
774 846 3.979789 CACAAGCGTGGGTGCATA 58.020 55.556 4.26 0.00 39.64 3.14
780 852 1.577328 CCTAACTGCACAAGCGTGGG 61.577 60.000 4.26 0.00 46.23 4.61
783 855 1.961793 TTTCCTAACTGCACAAGCGT 58.038 45.000 0.00 0.00 46.23 5.07
824 896 9.755804 TTGAAATTTTAGTCACATGCAACATAA 57.244 25.926 0.00 0.00 0.00 1.90
829 935 9.545105 AAAGATTGAAATTTTAGTCACATGCAA 57.455 25.926 7.96 0.00 0.00 4.08
848 954 6.622833 AAAACCCTGCAAAATGAAAGATTG 57.377 33.333 0.00 0.00 0.00 2.67
867 989 7.359681 CCCGCACAAAATAAACAGGATAAAAAC 60.360 37.037 0.00 0.00 0.00 2.43
878 1000 2.432206 AGCACCCGCACAAAATAAAC 57.568 45.000 0.00 0.00 42.27 2.01
882 1004 0.881118 CAGTAGCACCCGCACAAAAT 59.119 50.000 0.00 0.00 42.27 1.82
939 1061 1.051812 ACAAGGTCCTCAGTCACAGG 58.948 55.000 0.00 0.00 0.00 4.00
943 1065 0.106708 GCACACAAGGTCCTCAGTCA 59.893 55.000 0.00 0.00 0.00 3.41
962 1084 0.800631 AATGCACGCATGAGACTGTG 59.199 50.000 5.06 0.98 36.68 3.66
963 1085 0.800631 CAATGCACGCATGAGACTGT 59.199 50.000 5.06 0.00 36.68 3.55
996 1118 2.189833 GGAACCCCGCTCCATTTTC 58.810 57.895 0.00 0.00 32.77 2.29
1011 1133 3.129638 CACCTTGAAAACAAGAACCGGAA 59.870 43.478 9.46 0.00 34.26 4.30
1014 1136 3.792124 GCTCACCTTGAAAACAAGAACCG 60.792 47.826 10.89 0.00 34.26 4.44
1029 1151 2.491271 AGGGGAAAATGGCTCACCT 58.509 52.632 0.00 0.00 42.20 4.00
1036 1158 1.547372 CTTCTGTGCAGGGGAAAATGG 59.453 52.381 0.00 0.00 0.00 3.16
1038 1160 2.683211 ACTTCTGTGCAGGGGAAAAT 57.317 45.000 0.00 0.00 0.00 1.82
1044 1166 3.645884 CATGAAAAACTTCTGTGCAGGG 58.354 45.455 0.00 0.00 0.00 4.45
1048 1170 8.638685 ATTATATGCATGAAAAACTTCTGTGC 57.361 30.769 10.16 8.09 35.44 4.57
1079 1201 7.418712 CCAAAATATAAGAACGGAGGGAGTACT 60.419 40.741 0.00 0.00 0.00 2.73
1080 1202 6.704937 CCAAAATATAAGAACGGAGGGAGTAC 59.295 42.308 0.00 0.00 0.00 2.73
1081 1203 6.183361 CCCAAAATATAAGAACGGAGGGAGTA 60.183 42.308 0.00 0.00 34.49 2.59
1082 1204 5.397559 CCCAAAATATAAGAACGGAGGGAGT 60.398 44.000 0.00 0.00 34.49 3.85
1083 1205 5.063880 CCCAAAATATAAGAACGGAGGGAG 58.936 45.833 0.00 0.00 34.49 4.30
1084 1206 4.722781 TCCCAAAATATAAGAACGGAGGGA 59.277 41.667 0.00 0.00 39.16 4.20
1085 1207 4.820173 GTCCCAAAATATAAGAACGGAGGG 59.180 45.833 0.00 0.00 0.00 4.30
1086 1208 4.510340 CGTCCCAAAATATAAGAACGGAGG 59.490 45.833 0.00 0.00 0.00 4.30
1087 1209 4.510340 CCGTCCCAAAATATAAGAACGGAG 59.490 45.833 4.70 0.00 39.09 4.63
1088 1210 4.161942 TCCGTCCCAAAATATAAGAACGGA 59.838 41.667 9.04 9.04 42.60 4.69
1089 1211 4.444536 TCCGTCCCAAAATATAAGAACGG 58.555 43.478 4.33 4.33 38.24 4.44
1090 1212 4.510340 CCTCCGTCCCAAAATATAAGAACG 59.490 45.833 0.00 0.00 0.00 3.95
1091 1213 4.820173 CCCTCCGTCCCAAAATATAAGAAC 59.180 45.833 0.00 0.00 0.00 3.01
1092 1214 4.722781 TCCCTCCGTCCCAAAATATAAGAA 59.277 41.667 0.00 0.00 0.00 2.52
1093 1215 4.300345 TCCCTCCGTCCCAAAATATAAGA 58.700 43.478 0.00 0.00 0.00 2.10
1094 1216 4.102681 ACTCCCTCCGTCCCAAAATATAAG 59.897 45.833 0.00 0.00 0.00 1.73
1095 1217 4.042174 ACTCCCTCCGTCCCAAAATATAA 58.958 43.478 0.00 0.00 0.00 0.98
1096 1218 3.660959 ACTCCCTCCGTCCCAAAATATA 58.339 45.455 0.00 0.00 0.00 0.86
1097 1219 2.488836 ACTCCCTCCGTCCCAAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
1098 1220 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
1099 1221 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
1100 1222 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
1101 1223 2.023695 AGTATACTCCCTCCGTCCCAAA 60.024 50.000 0.00 0.00 0.00 3.28
1102 1224 1.572415 AGTATACTCCCTCCGTCCCAA 59.428 52.381 0.00 0.00 0.00 4.12
1103 1225 1.229131 AGTATACTCCCTCCGTCCCA 58.771 55.000 0.00 0.00 0.00 4.37
1104 1226 1.962100 CAAGTATACTCCCTCCGTCCC 59.038 57.143 5.70 0.00 0.00 4.46
1105 1227 2.941480 TCAAGTATACTCCCTCCGTCC 58.059 52.381 5.70 0.00 0.00 4.79
1106 1228 5.532664 AAATCAAGTATACTCCCTCCGTC 57.467 43.478 5.70 0.00 0.00 4.79
1107 1229 5.189145 ACAAAATCAAGTATACTCCCTCCGT 59.811 40.000 5.70 0.00 0.00 4.69
1108 1230 5.671493 ACAAAATCAAGTATACTCCCTCCG 58.329 41.667 5.70 0.00 0.00 4.63
1109 1231 9.457436 TTTAACAAAATCAAGTATACTCCCTCC 57.543 33.333 5.70 0.00 0.00 4.30
1150 1272 2.359900 CTTCAGTTTCTGCCGGCTTAT 58.640 47.619 29.70 4.57 0.00 1.73
1176 1298 5.937492 AAAATCATATGTGAGATCCCCCT 57.063 39.130 1.90 0.00 37.87 4.79
1229 1351 6.824958 TGTACCCTTAAGAAGCTTCCATAT 57.175 37.500 22.81 9.54 0.00 1.78
1230 1352 6.824958 ATGTACCCTTAAGAAGCTTCCATA 57.175 37.500 22.81 13.47 0.00 2.74
1248 1370 4.631377 TGTATGCAGCAGAAGTGAATGTAC 59.369 41.667 0.00 0.00 0.00 2.90
1256 1378 7.864108 TTATACATTTGTATGCAGCAGAAGT 57.136 32.000 12.41 0.00 41.03 3.01
1270 1392 7.207383 TGGTGACGGTCTAGATTATACATTTG 58.793 38.462 9.88 0.00 0.00 2.32
1271 1393 7.356089 TGGTGACGGTCTAGATTATACATTT 57.644 36.000 9.88 0.00 0.00 2.32
1277 1399 5.128827 ACAACATGGTGACGGTCTAGATTAT 59.871 40.000 19.90 0.00 0.00 1.28
1288 1410 5.163794 GGGACTTAATAACAACATGGTGACG 60.164 44.000 19.90 0.00 0.00 4.35
1351 1473 6.509418 TGCTCCCATGTAAGTATTTTGAAC 57.491 37.500 0.00 0.00 0.00 3.18
1402 1524 7.162761 TGTCGAGGAAAGTCAAACCAATATTA 58.837 34.615 0.00 0.00 0.00 0.98
1404 1526 5.556915 TGTCGAGGAAAGTCAAACCAATAT 58.443 37.500 0.00 0.00 0.00 1.28
1437 1559 6.465439 TTATAGACCCATACAGTGTGTCTG 57.535 41.667 19.18 9.03 43.97 3.51
1438 1560 6.611642 ACATTATAGACCCATACAGTGTGTCT 59.388 38.462 15.80 15.80 45.70 3.41
1439 1561 6.817184 ACATTATAGACCCATACAGTGTGTC 58.183 40.000 5.88 4.65 35.69 3.67
1451 1573 8.312564 GGGAGTAGAACATAACATTATAGACCC 58.687 40.741 0.00 0.00 0.00 4.46
1475 1597 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
1480 1602 9.257651 CCCTACAAAGACTTATATTTAGGAACG 57.742 37.037 0.00 0.00 0.00 3.95
1511 1633 5.048013 TGCTCCGTATGTAGTCCATCTAATG 60.048 44.000 0.00 0.00 34.86 1.90
1513 1635 4.466827 TGCTCCGTATGTAGTCCATCTAA 58.533 43.478 0.00 0.00 34.86 2.10
1514 1636 4.094830 TGCTCCGTATGTAGTCCATCTA 57.905 45.455 0.00 0.00 34.86 1.98
1515 1637 2.945456 TGCTCCGTATGTAGTCCATCT 58.055 47.619 0.00 0.00 34.86 2.90
1516 1638 3.728076 TTGCTCCGTATGTAGTCCATC 57.272 47.619 0.00 0.00 34.86 3.51
1517 1639 4.481368 TTTTGCTCCGTATGTAGTCCAT 57.519 40.909 0.00 0.00 37.58 3.41
1520 1642 8.138365 TCATTTATTTTGCTCCGTATGTAGTC 57.862 34.615 0.00 0.00 0.00 2.59
1521 1643 8.500753 TTCATTTATTTTGCTCCGTATGTAGT 57.499 30.769 0.00 0.00 0.00 2.73
1527 1649 9.997482 GTTTAGATTCATTTATTTTGCTCCGTA 57.003 29.630 0.00 0.00 0.00 4.02
1528 1650 8.739972 AGTTTAGATTCATTTATTTTGCTCCGT 58.260 29.630 0.00 0.00 0.00 4.69
1529 1651 9.573133 AAGTTTAGATTCATTTATTTTGCTCCG 57.427 29.630 0.00 0.00 0.00 4.63
1552 1674 9.944376 ACGGATGTATATAGATGCATTTTAAGT 57.056 29.630 11.19 0.00 38.38 2.24
1556 1678 9.890629 ACATACGGATGTATATAGATGCATTTT 57.109 29.630 12.79 0.00 44.77 1.82
1557 1679 9.317936 CACATACGGATGTATATAGATGCATTT 57.682 33.333 14.23 0.00 44.82 2.32
1558 1680 7.928167 CCACATACGGATGTATATAGATGCATT 59.072 37.037 14.23 1.23 44.82 3.56
1559 1681 7.069950 ACCACATACGGATGTATATAGATGCAT 59.930 37.037 14.23 0.00 44.82 3.96
1560 1682 6.379988 ACCACATACGGATGTATATAGATGCA 59.620 38.462 14.23 0.00 44.82 3.96
1561 1683 6.806751 ACCACATACGGATGTATATAGATGC 58.193 40.000 14.23 0.00 44.82 3.91
1562 1684 8.466798 TGAACCACATACGGATGTATATAGATG 58.533 37.037 14.23 0.00 44.82 2.90
1563 1685 8.589701 TGAACCACATACGGATGTATATAGAT 57.410 34.615 14.23 0.00 44.82 1.98
1564 1686 8.589701 ATGAACCACATACGGATGTATATAGA 57.410 34.615 14.23 0.00 44.82 1.98
1565 1687 9.952188 CTATGAACCACATACGGATGTATATAG 57.048 37.037 14.23 12.28 44.82 1.31
1566 1688 9.470399 ACTATGAACCACATACGGATGTATATA 57.530 33.333 14.23 7.10 44.82 0.86
1567 1689 8.251026 CACTATGAACCACATACGGATGTATAT 58.749 37.037 14.23 1.68 44.82 0.86
1568 1690 7.309560 CCACTATGAACCACATACGGATGTATA 60.310 40.741 14.23 6.48 44.82 1.47
1569 1691 6.455647 CACTATGAACCACATACGGATGTAT 58.544 40.000 14.23 5.54 44.82 2.29
1570 1692 5.221362 CCACTATGAACCACATACGGATGTA 60.221 44.000 14.23 0.00 44.82 2.29
1572 1694 4.058124 CCACTATGAACCACATACGGATG 58.942 47.826 5.94 5.94 40.07 3.51
1573 1695 3.964688 TCCACTATGAACCACATACGGAT 59.035 43.478 0.00 0.00 40.07 4.18
1574 1696 3.367321 TCCACTATGAACCACATACGGA 58.633 45.455 0.00 0.00 40.07 4.69
1575 1697 3.812156 TCCACTATGAACCACATACGG 57.188 47.619 0.00 0.00 40.07 4.02
1576 1698 5.601662 AGATTCCACTATGAACCACATACG 58.398 41.667 0.00 0.00 40.07 3.06
1577 1699 6.821388 AGAGATTCCACTATGAACCACATAC 58.179 40.000 0.00 0.00 40.07 2.39
1578 1700 7.563556 TGTAGAGATTCCACTATGAACCACATA 59.436 37.037 0.00 0.00 40.07 2.29
1579 1701 5.965033 AGAGATTCCACTATGAACCACAT 57.035 39.130 0.00 0.00 42.39 3.21
1580 1702 5.719563 TGTAGAGATTCCACTATGAACCACA 59.280 40.000 0.00 0.00 0.00 4.17
1581 1703 6.222038 TGTAGAGATTCCACTATGAACCAC 57.778 41.667 0.00 0.00 0.00 4.16
1582 1704 6.867519 TTGTAGAGATTCCACTATGAACCA 57.132 37.500 0.00 0.00 0.00 3.67
1583 1705 7.492994 GTCTTTGTAGAGATTCCACTATGAACC 59.507 40.741 0.00 0.00 0.00 3.62
1584 1706 8.254508 AGTCTTTGTAGAGATTCCACTATGAAC 58.745 37.037 0.00 0.00 0.00 3.18
1585 1707 8.367660 AGTCTTTGTAGAGATTCCACTATGAA 57.632 34.615 0.00 0.00 0.00 2.57
1586 1708 7.962995 AGTCTTTGTAGAGATTCCACTATGA 57.037 36.000 0.00 0.00 0.00 2.15
1587 1709 9.522804 GTAAGTCTTTGTAGAGATTCCACTATG 57.477 37.037 0.00 0.00 0.00 2.23
1588 1710 9.256228 TGTAAGTCTTTGTAGAGATTCCACTAT 57.744 33.333 0.00 0.00 0.00 2.12
1589 1711 8.645814 TGTAAGTCTTTGTAGAGATTCCACTA 57.354 34.615 0.00 0.00 0.00 2.74
1590 1712 7.540474 TGTAAGTCTTTGTAGAGATTCCACT 57.460 36.000 0.00 0.00 0.00 4.00
1591 1713 8.779354 AATGTAAGTCTTTGTAGAGATTCCAC 57.221 34.615 0.00 0.00 0.00 4.02
1597 1719 9.924650 GTTCCTAAATGTAAGTCTTTGTAGAGA 57.075 33.333 0.00 0.00 0.00 3.10
1598 1720 8.861101 CGTTCCTAAATGTAAGTCTTTGTAGAG 58.139 37.037 0.00 0.00 0.00 2.43
1599 1721 7.816031 CCGTTCCTAAATGTAAGTCTTTGTAGA 59.184 37.037 0.00 0.00 0.00 2.59
1600 1722 7.816031 TCCGTTCCTAAATGTAAGTCTTTGTAG 59.184 37.037 0.00 0.00 0.00 2.74
1601 1723 7.669427 TCCGTTCCTAAATGTAAGTCTTTGTA 58.331 34.615 0.00 0.00 0.00 2.41
1602 1724 6.527423 TCCGTTCCTAAATGTAAGTCTTTGT 58.473 36.000 0.00 0.00 0.00 2.83
1603 1725 6.092259 CCTCCGTTCCTAAATGTAAGTCTTTG 59.908 42.308 0.00 0.00 0.00 2.77
1604 1726 6.171213 CCTCCGTTCCTAAATGTAAGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
1605 1727 5.338137 CCCTCCGTTCCTAAATGTAAGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
1606 1728 4.161754 CCCTCCGTTCCTAAATGTAAGTCT 59.838 45.833 0.00 0.00 0.00 3.24
1607 1729 4.161001 TCCCTCCGTTCCTAAATGTAAGTC 59.839 45.833 0.00 0.00 0.00 3.01
1608 1730 4.098894 TCCCTCCGTTCCTAAATGTAAGT 58.901 43.478 0.00 0.00 0.00 2.24
1609 1731 4.161754 ACTCCCTCCGTTCCTAAATGTAAG 59.838 45.833 0.00 0.00 0.00 2.34
1610 1732 4.098894 ACTCCCTCCGTTCCTAAATGTAA 58.901 43.478 0.00 0.00 0.00 2.41
1611 1733 3.716431 ACTCCCTCCGTTCCTAAATGTA 58.284 45.455 0.00 0.00 0.00 2.29
1612 1734 2.547990 ACTCCCTCCGTTCCTAAATGT 58.452 47.619 0.00 0.00 0.00 2.71
1613 1735 3.449737 TGTACTCCCTCCGTTCCTAAATG 59.550 47.826 0.00 0.00 0.00 2.32
1614 1736 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
1615 1737 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
1616 1738 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
1617 1739 3.053095 AGAATGTACTCCCTCCGTTCCTA 60.053 47.826 0.00 0.00 0.00 2.94
1618 1740 2.108970 GAATGTACTCCCTCCGTTCCT 58.891 52.381 0.00 0.00 0.00 3.36
1619 1741 2.108970 AGAATGTACTCCCTCCGTTCC 58.891 52.381 0.00 0.00 0.00 3.62
1620 1742 4.996788 TTAGAATGTACTCCCTCCGTTC 57.003 45.455 0.00 0.00 0.00 3.95
1621 1743 5.247792 ACTTTTAGAATGTACTCCCTCCGTT 59.752 40.000 0.00 0.00 0.00 4.44
1622 1744 4.776308 ACTTTTAGAATGTACTCCCTCCGT 59.224 41.667 0.00 0.00 0.00 4.69
1623 1745 5.340439 ACTTTTAGAATGTACTCCCTCCG 57.660 43.478 0.00 0.00 0.00 4.63
1624 1746 5.189145 TGGACTTTTAGAATGTACTCCCTCC 59.811 44.000 0.00 0.00 0.00 4.30
1625 1747 6.295719 TGGACTTTTAGAATGTACTCCCTC 57.704 41.667 0.00 0.00 0.00 4.30
1676 1798 1.215173 TGGACTAATGGCTGGGAATGG 59.785 52.381 0.00 0.00 0.00 3.16
1677 1799 2.734755 TGGACTAATGGCTGGGAATG 57.265 50.000 0.00 0.00 0.00 2.67
1681 1803 3.576078 TGTATTGGACTAATGGCTGGG 57.424 47.619 0.00 0.00 0.00 4.45
1683 1805 4.201950 GCACTTGTATTGGACTAATGGCTG 60.202 45.833 0.00 0.00 0.00 4.85
1686 1808 4.943705 AGTGCACTTGTATTGGACTAATGG 59.056 41.667 15.25 0.00 43.16 3.16
1720 1843 5.026790 ACCTCAGCTAGTTTCCTACAATCT 58.973 41.667 0.00 0.00 0.00 2.40
1725 1848 7.974482 TTAAAAACCTCAGCTAGTTTCCTAC 57.026 36.000 8.61 0.00 35.19 3.18
1736 1859 8.780249 TGTGAGTATACTTTTAAAAACCTCAGC 58.220 33.333 6.88 5.45 0.00 4.26
1755 1878 7.551974 ACGTCTAGCTAAGAAGTAATGTGAGTA 59.448 37.037 8.99 0.00 43.97 2.59
1757 1880 6.787225 ACGTCTAGCTAAGAAGTAATGTGAG 58.213 40.000 8.99 0.00 43.97 3.51
1758 1881 6.183360 GGACGTCTAGCTAAGAAGTAATGTGA 60.183 42.308 16.46 0.00 45.50 3.58
1769 1892 8.136165 ACTTTTACATATGGACGTCTAGCTAAG 58.864 37.037 16.46 9.59 0.00 2.18
1865 1988 5.391950 CCAATACAAGCCAATGACACAGTAC 60.392 44.000 0.00 0.00 0.00 2.73
1868 1991 3.507233 ACCAATACAAGCCAATGACACAG 59.493 43.478 0.00 0.00 0.00 3.66
1903 2026 0.520404 GAACATGCTGACAGCCACAG 59.480 55.000 24.33 13.34 41.51 3.66
2005 2128 1.625315 TGTGGGAGAACAGATGGTGAG 59.375 52.381 0.00 0.00 0.00 3.51
2008 2131 1.434188 TGTGTGGGAGAACAGATGGT 58.566 50.000 0.00 0.00 0.00 3.55
2038 2161 0.254462 TTGGTGACAGTGGCTCAACA 59.746 50.000 0.00 0.00 44.54 3.33
2065 2188 4.281182 ACCGGATCATAGGATGTGTAGTTC 59.719 45.833 9.46 0.00 32.67 3.01
2104 2227 6.299141 AGAGAGCTTGGAAAAGTTTACATGA 58.701 36.000 0.00 0.00 29.62 3.07
2110 2233 8.237811 TCATAAAAGAGAGCTTGGAAAAGTTT 57.762 30.769 0.00 0.00 33.79 2.66
2119 2242 6.596888 TCTTGTCCATCATAAAAGAGAGCTTG 59.403 38.462 0.00 0.00 33.79 4.01
2120 2243 6.597280 GTCTTGTCCATCATAAAAGAGAGCTT 59.403 38.462 0.00 0.00 35.37 3.74
2122 2245 5.877012 TGTCTTGTCCATCATAAAAGAGAGC 59.123 40.000 0.00 0.00 0.00 4.09
2134 2257 1.067565 TCAGACGCTGTCTTGTCCATC 60.068 52.381 8.23 0.00 41.37 3.51
2218 2341 8.692710 CCATATGCAGCTTGGAATATATTCATT 58.307 33.333 23.54 4.69 38.53 2.57
2396 2519 7.014711 TCTCTCAAACGAGCTAATATCCTTCAT 59.985 37.037 0.00 0.00 0.00 2.57
2561 2684 1.414158 GCACTCCCAGGTATGCTAGA 58.586 55.000 0.00 0.00 35.16 2.43
2565 2688 2.203070 CCGCACTCCCAGGTATGC 60.203 66.667 5.24 5.24 34.66 3.14
2587 2710 8.391106 CCTTTACAGTCACTAACAGCATTAATC 58.609 37.037 0.00 0.00 0.00 1.75
2594 2717 3.244457 ACCCCTTTACAGTCACTAACAGC 60.244 47.826 0.00 0.00 0.00 4.40
2599 2722 2.980548 ACCACCCCTTTACAGTCACTA 58.019 47.619 0.00 0.00 0.00 2.74
2717 2840 3.316308 CCAAGCAAGGGATTAGCATGTAC 59.684 47.826 0.00 0.00 0.00 2.90
2803 2957 3.056821 TGACACGAGGGTCAGATTGTAAG 60.057 47.826 3.76 0.00 42.56 2.34
2804 2958 2.894765 TGACACGAGGGTCAGATTGTAA 59.105 45.455 3.76 0.00 42.56 2.41
2866 3030 6.484977 AGAACAAGACTCAGAATTTCCACTTC 59.515 38.462 0.00 0.00 0.00 3.01
2910 3074 3.883669 AGAAGGATCATCAAACTCCAGC 58.116 45.455 0.00 0.00 0.00 4.85
2919 3083 4.808414 AACGACTGAAGAAGGATCATCA 57.192 40.909 0.00 0.00 32.71 3.07
2962 3126 2.338015 CGCAGCATGAAGGCCTTGT 61.338 57.895 26.25 8.65 39.69 3.16
2997 3161 2.610433 TGTTTCTGTCTAGCTGCGATG 58.390 47.619 0.00 0.00 0.00 3.84
3105 3269 1.134401 AGGTCAATATCACACAGCCCG 60.134 52.381 0.00 0.00 0.00 6.13
3173 3432 9.513906 TTCCATTCCGATATGAAGCAAATATTA 57.486 29.630 0.00 0.00 0.00 0.98
3268 3529 9.605275 TGATGAACCAGATAAAGTAGATTGAAG 57.395 33.333 0.00 0.00 0.00 3.02
3300 3562 2.738846 GCACAGAACCACATGAGTACAG 59.261 50.000 0.00 0.00 0.00 2.74
3308 3570 5.072741 ACTGAATTTAGCACAGAACCACAT 58.927 37.500 0.00 0.00 35.85 3.21
3383 3728 2.339418 CTAATGCCCGTAACGTTGTCA 58.661 47.619 11.99 1.82 0.00 3.58
3425 3770 1.962807 GGCCATGGTGCTGCAATATTA 59.037 47.619 14.67 0.00 0.00 0.98
3446 3791 1.062880 GACTGGAGAGACGATGACGAC 59.937 57.143 0.00 0.00 42.66 4.34
3476 3821 1.270414 CCCTCTCACCTGGAGCACAT 61.270 60.000 0.00 0.00 43.70 3.21
3496 3841 7.418408 TGCGTTTCAAAACATATTTGTGAGTA 58.582 30.769 6.45 0.00 38.81 2.59
3518 3863 0.378257 ATTTCTTAGTGCCGCATGCG 59.622 50.000 32.60 32.60 45.60 4.73
3530 3875 8.784043 GTTGCAAGGAAGTTCTCTTATTTCTTA 58.216 33.333 0.00 0.00 33.64 2.10
3554 3899 7.452880 AGTTATTGTCAATACATGCACAGTT 57.547 32.000 4.71 0.00 34.97 3.16
3577 3922 4.875544 TTCTGAAACCGAAACAGACAAG 57.124 40.909 0.00 0.00 39.80 3.16
3623 3971 0.871057 GAGCTTCCTGATAATGGCGC 59.129 55.000 0.00 0.00 0.00 6.53
3669 4017 4.119862 CGAATGGACCCATAGTTGTACTG 58.880 47.826 1.41 0.00 35.31 2.74
3678 4026 2.799126 AGCAAACGAATGGACCCATA 57.201 45.000 1.41 0.00 35.31 2.74
3679 4027 2.799126 TAGCAAACGAATGGACCCAT 57.201 45.000 0.00 0.00 38.46 4.00
3934 4283 1.909700 TCTGCTGGACAAAATGGGAC 58.090 50.000 0.00 0.00 0.00 4.46
3935 4284 2.905415 ATCTGCTGGACAAAATGGGA 57.095 45.000 0.00 0.00 0.00 4.37
3936 4285 2.360165 GCTATCTGCTGGACAAAATGGG 59.640 50.000 0.00 0.00 38.95 4.00
3985 4335 4.337555 CCAGAGATAATGCCTCAAAAGGTG 59.662 45.833 0.00 0.00 45.34 4.00
3996 4346 7.936301 AGGAGATTTTACTTCCAGAGATAATGC 59.064 37.037 0.00 0.00 0.00 3.56
4093 4444 3.384467 TGCATGATCCTGAGTATCGACAA 59.616 43.478 0.00 0.00 38.61 3.18
4105 4456 0.323087 TTGCTGCACTGCATGATCCT 60.323 50.000 0.00 0.00 42.96 3.24
4113 4464 0.316204 AAACCTGATTGCTGCACTGC 59.684 50.000 0.00 0.00 0.00 4.40
4178 4529 9.920946 AGAGGGAGTATTTAGCAAATTTTATCA 57.079 29.630 0.00 0.00 32.38 2.15
4198 4549 2.958355 CAAGCTTTTTCCAACAGAGGGA 59.042 45.455 0.00 0.00 0.00 4.20
4199 4550 2.036346 CCAAGCTTTTTCCAACAGAGGG 59.964 50.000 0.00 0.00 0.00 4.30
4200 4551 2.546584 GCCAAGCTTTTTCCAACAGAGG 60.547 50.000 0.00 0.00 0.00 3.69
4201 4552 2.546584 GGCCAAGCTTTTTCCAACAGAG 60.547 50.000 0.00 0.00 0.00 3.35
4202 4553 1.412343 GGCCAAGCTTTTTCCAACAGA 59.588 47.619 0.00 0.00 0.00 3.41
4203 4554 1.541015 GGGCCAAGCTTTTTCCAACAG 60.541 52.381 4.39 0.00 0.00 3.16
4205 4556 0.467804 TGGGCCAAGCTTTTTCCAAC 59.532 50.000 2.13 0.00 0.00 3.77
4206 4557 1.140652 CTTGGGCCAAGCTTTTTCCAA 59.859 47.619 31.72 17.82 34.63 3.53
4207 4558 0.758123 CTTGGGCCAAGCTTTTTCCA 59.242 50.000 31.72 1.40 34.63 3.53
4208 4559 3.612517 CTTGGGCCAAGCTTTTTCC 57.387 52.632 31.72 0.00 34.63 3.13
4216 4567 0.829182 AAGGACAAGCTTGGGCCAAG 60.829 55.000 36.47 36.47 43.57 3.61
4217 4568 0.827507 GAAGGACAAGCTTGGGCCAA 60.828 55.000 30.35 19.68 39.73 4.52
4218 4569 1.228552 GAAGGACAAGCTTGGGCCA 60.229 57.895 30.35 0.00 39.73 5.36
4219 4570 0.827507 TTGAAGGACAAGCTTGGGCC 60.828 55.000 29.18 26.82 39.73 5.80
4220 4571 1.039856 TTTGAAGGACAAGCTTGGGC 58.960 50.000 29.18 19.94 39.77 5.36
4221 4572 2.028748 CCATTTGAAGGACAAGCTTGGG 60.029 50.000 29.18 13.19 39.77 4.12
4222 4573 2.892852 TCCATTTGAAGGACAAGCTTGG 59.107 45.455 29.18 12.28 39.77 3.61
4223 4574 4.021719 ACATCCATTTGAAGGACAAGCTTG 60.022 41.667 24.84 24.84 39.77 4.01
4224 4575 4.154942 ACATCCATTTGAAGGACAAGCTT 58.845 39.130 0.00 0.00 39.77 3.74
4225 4576 3.771216 ACATCCATTTGAAGGACAAGCT 58.229 40.909 0.00 0.00 39.77 3.74
4226 4577 5.591877 AGATACATCCATTTGAAGGACAAGC 59.408 40.000 0.00 0.00 39.77 4.01
4227 4578 7.041508 GCTAGATACATCCATTTGAAGGACAAG 60.042 40.741 0.00 0.00 39.77 3.16
4228 4579 6.767902 GCTAGATACATCCATTTGAAGGACAA 59.232 38.462 0.00 0.00 38.13 3.18
4229 4580 6.126796 TGCTAGATACATCCATTTGAAGGACA 60.127 38.462 0.00 0.00 38.13 4.02
4230 4581 6.203723 GTGCTAGATACATCCATTTGAAGGAC 59.796 42.308 0.00 0.00 38.13 3.85
4231 4582 6.100279 AGTGCTAGATACATCCATTTGAAGGA 59.900 38.462 0.00 0.00 39.97 3.36
4232 4583 6.294473 AGTGCTAGATACATCCATTTGAAGG 58.706 40.000 0.00 0.00 0.00 3.46
4233 4584 8.768955 GTTAGTGCTAGATACATCCATTTGAAG 58.231 37.037 0.00 0.00 0.00 3.02
4234 4585 8.486210 AGTTAGTGCTAGATACATCCATTTGAA 58.514 33.333 0.00 0.00 0.00 2.69
4235 4586 8.023021 AGTTAGTGCTAGATACATCCATTTGA 57.977 34.615 0.00 0.00 0.00 2.69
4236 4587 8.554528 CAAGTTAGTGCTAGATACATCCATTTG 58.445 37.037 0.00 0.00 0.00 2.32
4237 4588 8.486210 TCAAGTTAGTGCTAGATACATCCATTT 58.514 33.333 0.00 0.00 0.00 2.32
4238 4589 8.023021 TCAAGTTAGTGCTAGATACATCCATT 57.977 34.615 0.00 0.00 0.00 3.16
4239 4590 7.603180 TCAAGTTAGTGCTAGATACATCCAT 57.397 36.000 0.00 0.00 0.00 3.41
4243 4594 7.060383 AGCATCAAGTTAGTGCTAGATACAT 57.940 36.000 11.30 0.00 46.54 2.29
4244 4595 6.471233 AGCATCAAGTTAGTGCTAGATACA 57.529 37.500 11.30 0.00 46.54 2.29
4250 4601 7.255625 CCAGTATCTAGCATCAAGTTAGTGCTA 60.256 40.741 16.22 16.22 46.54 3.49
4252 4603 5.694006 CCAGTATCTAGCATCAAGTTAGTGC 59.306 44.000 4.02 4.02 39.10 4.40
4253 4604 7.043961 TCCAGTATCTAGCATCAAGTTAGTG 57.956 40.000 0.00 0.00 33.25 2.74
4254 4605 7.847711 ATCCAGTATCTAGCATCAAGTTAGT 57.152 36.000 0.00 0.00 33.25 2.24
4255 4606 8.797438 TGTATCCAGTATCTAGCATCAAGTTAG 58.203 37.037 0.00 0.00 32.79 2.34
4257 4608 7.603180 TGTATCCAGTATCTAGCATCAAGTT 57.397 36.000 0.00 0.00 0.00 2.66
4258 4609 7.093552 GGATGTATCCAGTATCTAGCATCAAGT 60.094 40.741 6.03 0.00 46.38 3.16
4260 4611 7.175347 GGATGTATCCAGTATCTAGCATCAA 57.825 40.000 6.03 0.00 46.38 2.57
4261 4612 6.782082 GGATGTATCCAGTATCTAGCATCA 57.218 41.667 6.03 0.00 46.38 3.07
4278 4646 7.595819 AAAGTTTGTCCTTCAAATGGATGTA 57.404 32.000 0.00 0.00 45.88 2.29
4279 4647 6.484364 AAAGTTTGTCCTTCAAATGGATGT 57.516 33.333 0.00 0.00 45.88 3.06
4282 4650 6.940739 TGAAAAAGTTTGTCCTTCAAATGGA 58.059 32.000 3.27 0.00 45.88 3.41
4284 4652 7.253750 CGTCTGAAAAAGTTTGTCCTTCAAATG 60.254 37.037 3.27 0.00 45.88 2.32
4285 4653 6.751888 CGTCTGAAAAAGTTTGTCCTTCAAAT 59.248 34.615 3.27 0.00 45.88 2.32
4286 4654 6.090129 CGTCTGAAAAAGTTTGTCCTTCAAA 58.910 36.000 3.27 0.00 42.79 2.69
4288 4656 4.095782 CCGTCTGAAAAAGTTTGTCCTTCA 59.904 41.667 3.27 2.33 0.00 3.02
4289 4657 4.334481 TCCGTCTGAAAAAGTTTGTCCTTC 59.666 41.667 3.27 0.00 0.00 3.46
4290 4658 4.266714 TCCGTCTGAAAAAGTTTGTCCTT 58.733 39.130 3.27 0.00 0.00 3.36
4291 4659 3.877508 CTCCGTCTGAAAAAGTTTGTCCT 59.122 43.478 3.27 0.00 0.00 3.85
4292 4660 3.626217 ACTCCGTCTGAAAAAGTTTGTCC 59.374 43.478 3.27 0.00 0.00 4.02
4295 4663 4.616181 ACACTCCGTCTGAAAAAGTTTG 57.384 40.909 0.00 0.00 0.00 2.93
4296 4664 5.878669 AGTAACACTCCGTCTGAAAAAGTTT 59.121 36.000 0.00 0.00 0.00 2.66
4298 4666 5.019785 AGTAACACTCCGTCTGAAAAAGT 57.980 39.130 0.00 0.00 0.00 2.66
4299 4667 5.047847 TGAGTAACACTCCGTCTGAAAAAG 58.952 41.667 3.97 0.00 44.44 2.27
4300 4668 5.013568 TGAGTAACACTCCGTCTGAAAAA 57.986 39.130 3.97 0.00 44.44 1.94
4301 4669 4.659111 TGAGTAACACTCCGTCTGAAAA 57.341 40.909 3.97 0.00 44.44 2.29
4302 4670 4.659111 TTGAGTAACACTCCGTCTGAAA 57.341 40.909 3.97 0.00 44.44 2.69
4303 4671 4.142116 TGTTTGAGTAACACTCCGTCTGAA 60.142 41.667 3.97 0.00 44.44 3.02
4304 4672 3.382227 TGTTTGAGTAACACTCCGTCTGA 59.618 43.478 3.97 0.00 44.44 3.27
4305 4673 3.713288 TGTTTGAGTAACACTCCGTCTG 58.287 45.455 3.97 0.00 44.44 3.51
4306 4674 3.383825 ACTGTTTGAGTAACACTCCGTCT 59.616 43.478 3.97 0.00 44.44 4.18
4307 4675 3.489785 CACTGTTTGAGTAACACTCCGTC 59.510 47.826 3.97 0.00 44.44 4.79
4308 4676 3.118884 ACACTGTTTGAGTAACACTCCGT 60.119 43.478 3.97 0.00 44.44 4.69
4309 4677 3.454375 ACACTGTTTGAGTAACACTCCG 58.546 45.455 3.97 0.00 44.44 4.63
4310 4678 5.462398 CACTACACTGTTTGAGTAACACTCC 59.538 44.000 3.97 0.00 44.44 3.85
4311 4679 6.019801 CACACTACACTGTTTGAGTAACACTC 60.020 42.308 0.00 0.00 45.26 3.51
4312 4680 5.810587 CACACTACACTGTTTGAGTAACACT 59.189 40.000 0.00 0.00 41.73 3.55
4313 4681 5.579511 ACACACTACACTGTTTGAGTAACAC 59.420 40.000 0.00 0.00 41.73 3.32
4314 4682 5.726397 ACACACTACACTGTTTGAGTAACA 58.274 37.500 0.00 0.00 44.31 2.41
4315 4683 5.808540 TGACACACTACACTGTTTGAGTAAC 59.191 40.000 0.00 0.00 37.26 2.50
4391 4771 2.247267 GCGACGACGGTTTTGTGG 59.753 61.111 9.67 0.00 40.15 4.17
4400 4780 0.720027 TCTCAAGACTAGCGACGACG 59.280 55.000 2.12 2.12 42.93 5.12
4447 4827 7.415765 CGGGCCATTGTAACTTATTCAACAATA 60.416 37.037 4.39 0.00 39.80 1.90
4534 8564 1.238439 CTGAATGAGGTGCAACGGTT 58.762 50.000 0.00 0.00 38.12 4.44
4536 8566 1.308069 CCCTGAATGAGGTGCAACGG 61.308 60.000 0.00 0.00 40.87 4.44
4545 8575 5.521906 TCGAAGAAGTATCCCTGAATGAG 57.478 43.478 0.00 0.00 0.00 2.90
4592 8622 1.308998 AGAGGAAGCAAACAACACCG 58.691 50.000 0.00 0.00 0.00 4.94
4598 8628 4.499696 GCTAAAGCAAAGAGGAAGCAAACA 60.500 41.667 0.00 0.00 41.59 2.83
4642 8676 6.145338 ACCCAGTACGTTTACTCATAGATG 57.855 41.667 0.00 0.00 36.31 2.90
4649 8683 4.158394 TCCATGTACCCAGTACGTTTACTC 59.842 45.833 0.00 0.00 41.41 2.59
4650 8684 4.088634 TCCATGTACCCAGTACGTTTACT 58.911 43.478 0.00 0.00 41.41 2.24
4651 8685 4.454728 TCCATGTACCCAGTACGTTTAC 57.545 45.455 0.00 0.00 41.41 2.01
4652 8686 4.467082 ACATCCATGTACCCAGTACGTTTA 59.533 41.667 0.00 0.00 41.41 2.01
4653 8687 3.262405 ACATCCATGTACCCAGTACGTTT 59.738 43.478 0.00 0.00 41.41 3.60
4654 8688 2.835764 ACATCCATGTACCCAGTACGTT 59.164 45.455 0.00 0.00 41.41 3.99
4655 8689 2.463752 ACATCCATGTACCCAGTACGT 58.536 47.619 0.00 0.00 41.41 3.57
4656 8690 4.866508 ATACATCCATGTACCCAGTACG 57.133 45.455 1.42 0.00 45.11 3.67
4657 8691 6.826741 ACAAAATACATCCATGTACCCAGTAC 59.173 38.462 1.42 0.00 45.11 2.73
4658 8692 6.964464 ACAAAATACATCCATGTACCCAGTA 58.036 36.000 1.42 0.00 45.11 2.74
4659 8693 5.826643 ACAAAATACATCCATGTACCCAGT 58.173 37.500 1.42 0.00 45.11 4.00
4660 8694 7.502226 ACATACAAAATACATCCATGTACCCAG 59.498 37.037 1.42 0.00 45.11 4.45
4661 8695 7.350382 ACATACAAAATACATCCATGTACCCA 58.650 34.615 1.42 0.00 45.11 4.51
4662 8696 7.817418 ACATACAAAATACATCCATGTACCC 57.183 36.000 1.42 0.00 45.11 3.69
4778 8814 3.749665 AAGCAAAAATGCTACAAGGCA 57.250 38.095 3.44 0.00 45.54 4.75
4779 8815 3.614176 GCTAAGCAAAAATGCTACAAGGC 59.386 43.478 3.44 1.65 45.54 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.