Multiple sequence alignment - TraesCS1B01G204600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G204600 chr1B 100.000 3657 0 0 1 3657 368549855 368553511 0.000000e+00 6754.0
1 TraesCS1B01G204600 chr1B 100.000 3425 0 0 4040 7464 368553894 368557318 0.000000e+00 6325.0
2 TraesCS1B01G204600 chr1B 84.211 285 42 3 5374 5657 331137827 331137545 2.650000e-69 274.0
3 TraesCS1B01G204600 chr1B 94.488 127 6 1 6725 6851 564919116 564918991 2.120000e-45 195.0
4 TraesCS1B01G204600 chr1B 96.296 108 4 0 6875 6982 315353861 315353968 2.140000e-40 178.0
5 TraesCS1B01G204600 chr1A 97.663 2696 59 2 4040 6735 313741413 313738722 0.000000e+00 4626.0
6 TraesCS1B01G204600 chr1A 97.568 1686 34 3 1782 3461 313743318 313741634 0.000000e+00 2880.0
7 TraesCS1B01G204600 chr1A 94.947 1405 43 14 1 1385 313745105 313743709 0.000000e+00 2176.0
8 TraesCS1B01G204600 chr1A 89.041 365 14 4 1410 1774 313743719 313743381 5.350000e-116 429.0
9 TraesCS1B01G204600 chr1A 85.116 215 14 13 6973 7183 313738621 313738421 3.530000e-48 204.0
10 TraesCS1B01G204600 chr1A 93.382 136 8 1 7329 7464 313738424 313738290 4.570000e-47 200.0
11 TraesCS1B01G204600 chr1A 97.647 85 2 0 3463 3547 313741510 313741426 6.030000e-31 147.0
12 TraesCS1B01G204600 chr1D 94.547 2109 76 15 4040 6133 233904380 233906464 0.000000e+00 3221.0
13 TraesCS1B01G204600 chr1D 96.334 1555 45 6 2004 3548 233902825 233904377 0.000000e+00 2545.0
14 TraesCS1B01G204600 chr1D 95.272 1396 51 13 1 1385 233900871 233902262 0.000000e+00 2198.0
15 TraesCS1B01G204600 chr1D 90.685 569 36 3 6167 6735 233906596 233907147 0.000000e+00 741.0
16 TraesCS1B01G204600 chr1D 90.184 489 23 12 6980 7464 233907172 233907639 1.380000e-171 614.0
17 TraesCS1B01G204600 chr1D 90.566 371 16 6 1410 1774 233902252 233902609 2.440000e-129 473.0
18 TraesCS1B01G204600 chr1D 90.854 164 15 0 3197 3360 408915727 408915890 3.510000e-53 220.0
19 TraesCS1B01G204600 chr1D 78.039 255 41 13 1825 2071 492612925 492613172 6.030000e-31 147.0
20 TraesCS1B01G204600 chr1D 81.301 123 7 6 1836 1958 233902718 233902824 1.330000e-12 86.1
21 TraesCS1B01G204600 chr1D 100.000 30 0 0 6848 6877 233907145 233907174 1.000000e-03 56.5
22 TraesCS1B01G204600 chr2D 88.021 192 18 2 507 698 234337019 234337205 9.750000e-54 222.0
23 TraesCS1B01G204600 chr2D 90.854 164 15 0 3197 3360 650785741 650785904 3.510000e-53 220.0
24 TraesCS1B01G204600 chr2D 91.971 137 8 2 6717 6853 520503947 520503814 9.890000e-44 189.0
25 TraesCS1B01G204600 chr3B 88.950 181 15 2 507 687 5769879 5770054 1.260000e-52 219.0
26 TraesCS1B01G204600 chr3B 89.634 164 17 0 3197 3360 88150383 88150546 7.590000e-50 209.0
27 TraesCS1B01G204600 chr3B 95.082 122 6 0 6733 6854 172008617 172008738 7.640000e-45 193.0
28 TraesCS1B01G204600 chr3B 90.714 140 12 1 6712 6850 239252001 239252140 1.280000e-42 185.0
29 TraesCS1B01G204600 chr3B 95.614 114 1 3 3545 3657 718782958 718782848 5.950000e-41 180.0
30 TraesCS1B01G204600 chr3B 93.750 112 2 3 3546 3657 749715712 749715606 5.990000e-36 163.0
31 TraesCS1B01G204600 chr2A 88.950 181 15 2 507 687 573418819 573418644 1.260000e-52 219.0
32 TraesCS1B01G204600 chr2A 85.938 192 22 2 507 698 229957017 229956831 4.570000e-47 200.0
33 TraesCS1B01G204600 chr2A 85.417 192 23 2 507 698 98887760 98887946 2.120000e-45 195.0
34 TraesCS1B01G204600 chr2A 86.614 127 16 1 572 698 98888646 98888771 1.010000e-28 139.0
35 TraesCS1B01G204600 chr2A 82.203 118 19 2 6872 6988 675752807 675752923 4.770000e-17 100.0
36 TraesCS1B01G204600 chr5D 87.500 192 19 2 507 698 58253370 58253556 4.540000e-52 217.0
37 TraesCS1B01G204600 chr5D 90.780 141 13 0 507 647 17818031 17818171 9.890000e-44 189.0
38 TraesCS1B01G204600 chr5D 87.234 94 11 1 605 698 17818165 17818257 1.020000e-18 106.0
39 TraesCS1B01G204600 chr5D 95.122 41 2 0 1855 1895 477022142 477022102 1.740000e-06 65.8
40 TraesCS1B01G204600 chr7B 95.868 121 5 0 6730 6850 517095193 517095073 5.910000e-46 196.0
41 TraesCS1B01G204600 chr7B 94.643 112 5 1 6874 6985 685043919 685044029 9.960000e-39 172.0
42 TraesCS1B01G204600 chr6B 95.833 120 5 0 6731 6850 470914827 470914946 2.120000e-45 195.0
43 TraesCS1B01G204600 chr6B 83.810 210 28 4 1837 2043 655253783 655253989 2.120000e-45 195.0
44 TraesCS1B01G204600 chr6B 94.400 125 6 1 6726 6849 534978519 534978395 2.750000e-44 191.0
45 TraesCS1B01G204600 chr6B 92.562 121 8 1 6875 6995 1158253 1158134 9.960000e-39 172.0
46 TraesCS1B01G204600 chr6B 89.535 86 9 0 1856 1941 655254062 655253977 7.920000e-20 110.0
47 TraesCS1B01G204600 chr6B 87.719 57 7 0 1863 1919 447889689 447889633 4.830000e-07 67.6
48 TraesCS1B01G204600 chr6B 88.462 52 5 1 1864 1915 677150903 677150853 2.250000e-05 62.1
49 TraesCS1B01G204600 chr4B 97.368 114 1 2 3545 3657 148398904 148398792 7.640000e-45 193.0
50 TraesCS1B01G204600 chr3D 92.086 139 8 3 6734 6870 401179048 401178911 7.640000e-45 193.0
51 TraesCS1B01G204600 chr3D 95.455 110 5 0 6875 6984 42166761 42166652 7.700000e-40 176.0
52 TraesCS1B01G204600 chr3D 82.677 127 18 4 6875 7000 350668389 350668512 7.920000e-20 110.0
53 TraesCS1B01G204600 chr3D 83.544 79 10 3 1864 1939 585680362 585680284 3.740000e-08 71.3
54 TraesCS1B01G204600 chr5B 91.971 137 8 2 6717 6853 71643810 71643677 9.890000e-44 189.0
55 TraesCS1B01G204600 chr5B 96.330 109 4 0 6875 6983 665971388 665971280 5.950000e-41 180.0
56 TraesCS1B01G204600 chr5B 96.296 108 4 0 6875 6982 381026296 381026189 2.140000e-40 178.0
57 TraesCS1B01G204600 chr5B 94.690 113 6 0 6875 6987 61528 61640 7.700000e-40 176.0
58 TraesCS1B01G204600 chr5B 96.262 107 4 0 6875 6981 610680489 610680383 7.700000e-40 176.0
59 TraesCS1B01G204600 chr5B 95.413 109 5 0 6874 6982 355653058 355653166 2.770000e-39 174.0
60 TraesCS1B01G204600 chr6D 82.857 210 28 6 1837 2043 433631654 433631858 1.650000e-41 182.0
61 TraesCS1B01G204600 chr6D 78.431 204 37 6 1864 2063 433631856 433631656 7.860000e-25 126.0
62 TraesCS1B01G204600 chr6D 87.719 57 7 0 1863 1919 287023450 287023394 4.830000e-07 67.6
63 TraesCS1B01G204600 chr7A 97.468 79 1 1 3579 3657 452660783 452660860 4.700000e-27 134.0
64 TraesCS1B01G204600 chr7A 89.130 92 9 1 607 698 543626 543536 6.120000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G204600 chr1B 368549855 368557318 7463 False 6539.500000 6754 100.000000 1 7464 2 chr1B.!!$F2 7463
1 TraesCS1B01G204600 chr1A 313738290 313745105 6815 True 1523.142857 4626 93.623429 1 7464 7 chr1A.!!$R1 7463
2 TraesCS1B01G204600 chr1D 233900871 233907639 6768 False 1241.825000 3221 92.361125 1 7464 8 chr1D.!!$F3 7463

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
191 192 1.537814 TTCGACATGTACCAGGGCGT 61.538 55.000 0.00 0.00 45.74 5.68 F
1107 1127 0.395862 TCCTTCTCGCCTTCCTCGAT 60.396 55.000 0.00 0.00 35.25 3.59 F
1785 1875 0.750911 CAGAATCTTGGGAGGCAGGC 60.751 60.000 0.00 0.00 0.00 4.85 F
2764 2857 1.069204 TCCTCTTGCTGCGGTATGATC 59.931 52.381 0.00 0.00 0.00 2.92 F
3573 3793 0.250901 AGCTTAGTGTGTTGCTGGGG 60.251 55.000 0.00 0.00 34.19 4.96 F
3606 3826 0.537653 CCCATGATTGGCACATGCAA 59.462 50.000 11.49 0.00 42.15 4.08 F
3609 3829 0.899019 ATGATTGGCACATGCAAGCA 59.101 45.000 6.15 7.66 44.36 3.91 F
3611 3831 2.100989 TGATTGGCACATGCAAGCATA 58.899 42.857 7.29 0.00 44.36 3.14 F
3612 3832 2.696187 TGATTGGCACATGCAAGCATAT 59.304 40.909 7.29 0.00 44.36 1.78 F
3613 3833 3.890147 TGATTGGCACATGCAAGCATATA 59.110 39.130 7.29 0.00 44.36 0.86 F
3614 3834 4.525100 TGATTGGCACATGCAAGCATATAT 59.475 37.500 7.29 0.00 44.36 0.86 F
6015 6254 3.497640 CCTCAATCATCGCTCAAATCTCC 59.502 47.826 0.00 0.00 0.00 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1510 1536 0.394192 CCCACAGACTTCACTGCTGA 59.606 55.000 0.00 0.0 41.06 4.26 R
2626 2719 1.055849 TGGTTCTGCTGCCAGTTAGA 58.944 50.000 0.00 0.0 40.09 2.10 R
3554 3774 0.250901 CCCCAGCAACACACTAAGCT 60.251 55.000 0.00 0.0 37.95 3.74 R
4588 4817 0.865769 AACACCGCGTGCTTAAGAAG 59.134 50.000 6.67 0.0 36.98 2.85 R
4589 4818 2.151881 TAACACCGCGTGCTTAAGAA 57.848 45.000 6.67 0.0 36.98 2.52 R
4590 4819 2.264813 GATAACACCGCGTGCTTAAGA 58.735 47.619 6.67 0.0 36.98 2.10 R
4685 4914 7.448469 ACCAAGCTATAACTTCAACATTTCACT 59.552 33.333 0.00 0.0 0.00 3.41 R
5219 5456 7.652909 GGACAACAAAATGAATCAATGACAAGA 59.347 33.333 0.00 0.0 0.00 3.02 R
5753 5990 7.741554 ACTTCTTTATCTGTTGTAGGGATCT 57.258 36.000 0.00 0.0 0.00 2.75 R
6015 6254 4.744570 TGTATTTCTCAGTAGGCGAGTTG 58.255 43.478 0.00 0.0 0.00 3.16 R
6022 6261 4.962995 TCTCCCCTTGTATTTCTCAGTAGG 59.037 45.833 0.00 0.0 0.00 3.18 R
6839 7176 0.318762 GCAGGCTAATACTCCCTCCG 59.681 60.000 0.00 0.0 0.00 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.366396 CCTCTCCTTCCTTGCTGTAGTA 58.634 50.000 0.00 0.00 0.00 1.82
191 192 1.537814 TTCGACATGTACCAGGGCGT 61.538 55.000 0.00 0.00 45.74 5.68
305 306 1.774856 AGGGTTTGGCTTAGTGTCTGT 59.225 47.619 0.00 0.00 0.00 3.41
433 434 1.833049 GAGACGACGGGGGATGGAT 60.833 63.158 0.00 0.00 0.00 3.41
1083 1103 1.913762 CGACCTCCCTTCCACCACT 60.914 63.158 0.00 0.00 0.00 4.00
1107 1127 0.395862 TCCTTCTCGCCTTCCTCGAT 60.396 55.000 0.00 0.00 35.25 3.59
1169 1189 4.805719 CGCTTCACTATTATTCTGTGCTCA 59.194 41.667 0.00 0.00 0.00 4.26
1230 1250 1.872952 CTCAGTGATTGTTTCGTGCCA 59.127 47.619 0.00 0.00 0.00 4.92
1256 1276 2.181777 GTCATCGGCGAGCTGACA 59.818 61.111 28.96 3.73 43.42 3.58
1379 1399 6.187682 CCTTGGGTTCTATTCACAGGTAATT 58.812 40.000 0.00 0.00 0.00 1.40
1380 1400 6.663523 CCTTGGGTTCTATTCACAGGTAATTT 59.336 38.462 0.00 0.00 0.00 1.82
1381 1401 7.362920 CCTTGGGTTCTATTCACAGGTAATTTG 60.363 40.741 0.00 0.00 0.00 2.32
1382 1402 6.548321 TGGGTTCTATTCACAGGTAATTTGT 58.452 36.000 0.00 0.00 0.00 2.83
1383 1403 7.691213 TGGGTTCTATTCACAGGTAATTTGTA 58.309 34.615 0.00 0.00 0.00 2.41
1384 1404 8.164733 TGGGTTCTATTCACAGGTAATTTGTAA 58.835 33.333 0.00 0.00 0.00 2.41
1385 1405 8.674607 GGGTTCTATTCACAGGTAATTTGTAAG 58.325 37.037 0.00 0.00 0.00 2.34
1397 1417 8.073768 CAGGTAATTTGTAAGTTGTAACCACAG 58.926 37.037 0.00 0.00 35.67 3.66
1400 1420 7.875327 AATTTGTAAGTTGTAACCACAGACT 57.125 32.000 0.00 0.00 35.67 3.24
1401 1421 7.875327 ATTTGTAAGTTGTAACCACAGACTT 57.125 32.000 0.00 0.00 38.45 3.01
1402 1422 6.671614 TTGTAAGTTGTAACCACAGACTTG 57.328 37.500 11.88 0.00 37.00 3.16
1403 1423 5.979993 TGTAAGTTGTAACCACAGACTTGA 58.020 37.500 11.88 2.13 37.00 3.02
1404 1424 6.408035 TGTAAGTTGTAACCACAGACTTGAA 58.592 36.000 11.88 3.01 37.00 2.69
1405 1425 6.879993 TGTAAGTTGTAACCACAGACTTGAAA 59.120 34.615 11.88 0.00 37.00 2.69
1406 1426 7.554835 TGTAAGTTGTAACCACAGACTTGAAAT 59.445 33.333 11.88 0.00 37.00 2.17
1407 1427 7.404671 AAGTTGTAACCACAGACTTGAAATT 57.595 32.000 0.00 0.00 36.02 1.82
1408 1428 7.404671 AGTTGTAACCACAGACTTGAAATTT 57.595 32.000 0.00 0.00 35.67 1.82
1409 1429 7.257722 AGTTGTAACCACAGACTTGAAATTTG 58.742 34.615 0.00 0.00 35.67 2.32
1410 1430 6.767524 TGTAACCACAGACTTGAAATTTGT 57.232 33.333 0.00 0.00 0.00 2.83
1411 1431 7.867305 TGTAACCACAGACTTGAAATTTGTA 57.133 32.000 0.00 0.00 0.00 2.41
1412 1432 8.282455 TGTAACCACAGACTTGAAATTTGTAA 57.718 30.769 0.00 0.00 0.00 2.41
1413 1433 8.908903 TGTAACCACAGACTTGAAATTTGTAAT 58.091 29.630 0.00 0.00 0.00 1.89
1414 1434 9.744468 GTAACCACAGACTTGAAATTTGTAATT 57.256 29.630 0.00 0.00 0.00 1.40
1416 1436 8.647143 ACCACAGACTTGAAATTTGTAATTTG 57.353 30.769 0.00 0.00 0.00 2.32
1417 1437 8.257306 ACCACAGACTTGAAATTTGTAATTTGT 58.743 29.630 0.00 0.00 0.00 2.83
1418 1438 9.743057 CCACAGACTTGAAATTTGTAATTTGTA 57.257 29.630 0.00 0.00 0.00 2.41
1507 1533 2.902705 TGTGCAGAAGTAACTCGGTT 57.097 45.000 0.00 0.00 0.00 4.44
1509 1535 2.159014 TGTGCAGAAGTAACTCGGTTGT 60.159 45.455 0.00 0.00 0.00 3.32
1510 1536 2.870411 GTGCAGAAGTAACTCGGTTGTT 59.130 45.455 0.00 0.00 0.00 2.83
1511 1537 3.059800 GTGCAGAAGTAACTCGGTTGTTC 60.060 47.826 0.00 3.68 0.00 3.18
1556 1582 7.409465 TGTTCACTTGTTTGGTTGTTAAAAC 57.591 32.000 0.00 0.00 36.92 2.43
1638 1664 9.788960 GAATTCGTGATAATAGGCTTTTCTTTT 57.211 29.630 0.00 0.00 0.00 2.27
1748 1774 2.103094 GCCTCCACTATGCATGTGAGTA 59.897 50.000 22.76 11.72 37.60 2.59
1779 1805 3.844577 CTGTTTGCAGAATCTTGGGAG 57.155 47.619 0.00 0.00 45.28 4.30
1785 1875 0.750911 CAGAATCTTGGGAGGCAGGC 60.751 60.000 0.00 0.00 0.00 4.85
1800 1891 2.290071 GGCAGGCACTAAACTTGTCCTA 60.290 50.000 0.00 0.00 36.02 2.94
2090 2183 6.205270 AGCGAAATCCAAAATGATTTGCTTTT 59.795 30.769 3.91 0.00 43.23 2.27
2378 2471 3.437052 GGAGGGGAATGGTAAATGCATCT 60.437 47.826 0.00 0.00 0.00 2.90
2764 2857 1.069204 TCCTCTTGCTGCGGTATGATC 59.931 52.381 0.00 0.00 0.00 2.92
2868 2961 5.350914 TCAAGTTGCCAAAATCTTTTGTGTG 59.649 36.000 12.89 1.59 44.52 3.82
2890 2983 9.853555 GTGTGGTTCACATATGAATTGATTAAA 57.146 29.630 10.38 0.00 46.32 1.52
3018 3116 8.526681 CGCAAAATTGTCAATAATCTTAAGCTC 58.473 33.333 0.00 0.00 0.00 4.09
3042 3140 8.958119 TCAAGTTTTGTATGTCTCTTACTTGT 57.042 30.769 0.00 0.00 41.03 3.16
3271 3369 6.096987 TGGAATACTGAGCCTAACTTCTACAG 59.903 42.308 0.00 0.00 0.00 2.74
3549 3769 9.692749 TCTCTAAAACAAGATATATAGCCAACG 57.307 33.333 0.00 0.00 0.00 4.10
3550 3770 8.827177 TCTAAAACAAGATATATAGCCAACGG 57.173 34.615 0.00 0.00 0.00 4.44
3569 3789 3.217242 CGGAGCTTAGTGTGTTGCT 57.783 52.632 0.00 0.00 38.59 3.91
3570 3790 0.792640 CGGAGCTTAGTGTGTTGCTG 59.207 55.000 0.00 0.00 35.76 4.41
3571 3791 1.160137 GGAGCTTAGTGTGTTGCTGG 58.840 55.000 0.00 0.00 35.76 4.85
3572 3792 1.160137 GAGCTTAGTGTGTTGCTGGG 58.840 55.000 0.00 0.00 35.76 4.45
3573 3793 0.250901 AGCTTAGTGTGTTGCTGGGG 60.251 55.000 0.00 0.00 34.19 4.96
3574 3794 1.244019 GCTTAGTGTGTTGCTGGGGG 61.244 60.000 0.00 0.00 0.00 5.40
3602 3822 4.711799 CCCCCATGATTGGCACAT 57.288 55.556 0.00 0.00 42.15 3.21
3603 3823 2.129620 CCCCCATGATTGGCACATG 58.870 57.895 10.30 10.30 42.15 3.21
3604 3824 1.444250 CCCCATGATTGGCACATGC 59.556 57.895 11.49 0.00 42.15 4.06
3605 3825 1.331399 CCCCATGATTGGCACATGCA 61.331 55.000 11.49 0.00 42.15 3.96
3606 3826 0.537653 CCCATGATTGGCACATGCAA 59.462 50.000 11.49 0.00 42.15 4.08
3607 3827 1.472552 CCCATGATTGGCACATGCAAG 60.473 52.381 11.49 0.00 42.15 4.01
3608 3828 1.286501 CATGATTGGCACATGCAAGC 58.713 50.000 6.15 0.00 44.36 4.01
3609 3829 0.899019 ATGATTGGCACATGCAAGCA 59.101 45.000 6.15 7.66 44.36 3.91
3610 3830 0.899019 TGATTGGCACATGCAAGCAT 59.101 45.000 6.15 0.86 44.36 3.79
3611 3831 2.100989 TGATTGGCACATGCAAGCATA 58.899 42.857 7.29 0.00 44.36 3.14
3612 3832 2.696187 TGATTGGCACATGCAAGCATAT 59.304 40.909 7.29 0.00 44.36 1.78
3613 3833 3.890147 TGATTGGCACATGCAAGCATATA 59.110 39.130 7.29 0.00 44.36 0.86
3614 3834 4.525100 TGATTGGCACATGCAAGCATATAT 59.475 37.500 7.29 0.00 44.36 0.86
3615 3835 4.940905 TTGGCACATGCAAGCATATATT 57.059 36.364 7.29 0.00 44.36 1.28
3616 3836 4.940905 TGGCACATGCAAGCATATATTT 57.059 36.364 7.29 0.00 44.36 1.40
3617 3837 5.279255 TGGCACATGCAAGCATATATTTT 57.721 34.783 7.29 0.00 44.36 1.82
3618 3838 5.672503 TGGCACATGCAAGCATATATTTTT 58.327 33.333 7.29 0.00 44.36 1.94
3641 3861 8.824756 TTTTAGAGAGAGAGCTTAGGTTATGA 57.175 34.615 0.00 0.00 0.00 2.15
3642 3862 8.824756 TTTAGAGAGAGAGCTTAGGTTATGAA 57.175 34.615 0.00 0.00 0.00 2.57
3643 3863 8.824756 TTAGAGAGAGAGCTTAGGTTATGAAA 57.175 34.615 0.00 0.00 0.00 2.69
3644 3864 7.107639 AGAGAGAGAGCTTAGGTTATGAAAC 57.892 40.000 0.00 0.00 34.66 2.78
3645 3865 6.895204 AGAGAGAGAGCTTAGGTTATGAAACT 59.105 38.462 0.00 0.00 35.81 2.66
3646 3866 7.398904 AGAGAGAGAGCTTAGGTTATGAAACTT 59.601 37.037 0.00 0.00 35.81 2.66
3647 3867 7.912719 AGAGAGAGCTTAGGTTATGAAACTTT 58.087 34.615 0.00 0.00 35.81 2.66
3648 3868 7.821846 AGAGAGAGCTTAGGTTATGAAACTTTG 59.178 37.037 0.00 0.00 35.81 2.77
3649 3869 7.454225 AGAGAGCTTAGGTTATGAAACTTTGT 58.546 34.615 0.00 0.00 35.81 2.83
3650 3870 7.389053 AGAGAGCTTAGGTTATGAAACTTTGTG 59.611 37.037 0.00 0.00 35.81 3.33
3651 3871 6.998673 AGAGCTTAGGTTATGAAACTTTGTGT 59.001 34.615 0.00 0.00 35.81 3.72
3652 3872 6.970484 AGCTTAGGTTATGAAACTTTGTGTG 58.030 36.000 0.00 0.00 35.81 3.82
3653 3873 6.546034 AGCTTAGGTTATGAAACTTTGTGTGT 59.454 34.615 0.00 0.00 35.81 3.72
3654 3874 7.068226 AGCTTAGGTTATGAAACTTTGTGTGTT 59.932 33.333 0.00 0.00 35.81 3.32
3655 3875 7.704899 GCTTAGGTTATGAAACTTTGTGTGTTT 59.295 33.333 0.00 0.00 39.92 2.83
3656 3876 8.918961 TTAGGTTATGAAACTTTGTGTGTTTG 57.081 30.769 0.00 0.00 37.70 2.93
4237 4458 8.792830 ACTTTATCCCAGGTATATGTGACTTA 57.207 34.615 0.00 0.00 0.00 2.24
4588 4817 9.352191 TCCTCTGACCTTTAGATATTAGTACAC 57.648 37.037 0.00 0.00 0.00 2.90
4589 4818 9.357161 CCTCTGACCTTTAGATATTAGTACACT 57.643 37.037 0.00 0.00 0.00 3.55
5219 5456 5.073428 TGTTCAGAGCTACATCTATCGGAT 58.927 41.667 0.00 0.00 34.51 4.18
5753 5990 6.459985 CGAAATTCCCATCACAGATGCATTAA 60.460 38.462 0.00 0.00 0.00 1.40
6015 6254 3.497640 CCTCAATCATCGCTCAAATCTCC 59.502 47.826 0.00 0.00 0.00 3.71
6022 6261 0.371645 CGCTCAAATCTCCAACTCGC 59.628 55.000 0.00 0.00 0.00 5.03
6168 6505 5.042463 TGACCACACTTTTGGACTAATCA 57.958 39.130 0.00 0.00 39.24 2.57
6453 6790 2.749621 CTGTTAGTGGAGGGTTCATTGC 59.250 50.000 0.00 0.00 0.00 3.56
6482 6819 0.900182 ACGATCACAGGGAGCAGACA 60.900 55.000 0.00 0.00 0.00 3.41
6486 6823 1.351076 TCACAGGGAGCAGACAATCA 58.649 50.000 0.00 0.00 0.00 2.57
6505 6842 1.200716 CATCGCAGAAATGTGCACCTT 59.799 47.619 15.69 8.15 44.21 3.50
6509 6846 2.543445 CGCAGAAATGTGCACCTTTTCA 60.543 45.455 29.18 9.41 44.21 2.69
6531 6868 2.606725 CTGAGAATGGATGAACTGACGC 59.393 50.000 0.00 0.00 0.00 5.19
6619 6956 1.211457 AGGCAGATGACTTGACCCATC 59.789 52.381 0.00 0.00 39.44 3.51
6633 6970 5.408880 TGACCCATCGTGTTACAATCTTA 57.591 39.130 0.00 0.00 0.00 2.10
6677 7014 6.306987 TGAGCTTTCTGGAACTTAGGAATTT 58.693 36.000 0.00 0.00 0.00 1.82
6706 7043 9.309516 GATATTTCCTAATGATTCCGCGTAATA 57.690 33.333 4.92 0.00 0.00 0.98
6739 7076 7.865706 ATGAATTTTACTGTCATGTACTCCC 57.134 36.000 0.00 0.00 30.84 4.30
6740 7077 7.016153 TGAATTTTACTGTCATGTACTCCCT 57.984 36.000 0.00 0.00 0.00 4.20
6741 7078 7.103641 TGAATTTTACTGTCATGTACTCCCTC 58.896 38.462 0.00 0.00 0.00 4.30
6742 7079 5.416271 TTTTACTGTCATGTACTCCCTCC 57.584 43.478 0.00 0.00 0.00 4.30
6743 7080 1.475403 ACTGTCATGTACTCCCTCCG 58.525 55.000 0.00 0.00 0.00 4.63
6744 7081 1.272536 ACTGTCATGTACTCCCTCCGT 60.273 52.381 0.00 0.00 0.00 4.69
6745 7082 1.825474 CTGTCATGTACTCCCTCCGTT 59.175 52.381 0.00 0.00 0.00 4.44
6746 7083 1.822990 TGTCATGTACTCCCTCCGTTC 59.177 52.381 0.00 0.00 0.00 3.95
6747 7084 1.100510 TCATGTACTCCCTCCGTTCG 58.899 55.000 0.00 0.00 0.00 3.95
6748 7085 0.102481 CATGTACTCCCTCCGTTCGG 59.898 60.000 4.74 4.74 0.00 4.30
6749 7086 0.033796 ATGTACTCCCTCCGTTCGGA 60.034 55.000 13.34 13.34 0.00 4.55
6750 7087 0.251297 TGTACTCCCTCCGTTCGGAA 60.251 55.000 14.79 0.04 33.41 4.30
6751 7088 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
6752 7089 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
6753 7090 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
6754 7091 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
6755 7092 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
6756 7093 1.753073 TCCCTCCGTTCGGAATTACTC 59.247 52.381 14.79 0.00 33.41 2.59
6757 7094 1.535437 CCCTCCGTTCGGAATTACTCG 60.535 57.143 14.79 1.97 33.41 4.18
6758 7095 1.133790 CCTCCGTTCGGAATTACTCGT 59.866 52.381 14.79 0.00 33.41 4.18
6759 7096 2.355756 CCTCCGTTCGGAATTACTCGTA 59.644 50.000 14.79 0.00 33.41 3.43
6760 7097 3.357897 CTCCGTTCGGAATTACTCGTAC 58.642 50.000 14.79 0.00 33.41 3.67
6761 7098 2.746904 TCCGTTCGGAATTACTCGTACA 59.253 45.455 11.66 0.00 0.00 2.90
6762 7099 3.190327 TCCGTTCGGAATTACTCGTACAA 59.810 43.478 11.66 0.00 0.00 2.41
6763 7100 3.545078 CCGTTCGGAATTACTCGTACAAG 59.455 47.826 5.19 0.00 0.00 3.16
6764 7101 4.406069 CGTTCGGAATTACTCGTACAAGA 58.594 43.478 0.00 0.00 0.00 3.02
6765 7102 4.853196 CGTTCGGAATTACTCGTACAAGAA 59.147 41.667 0.00 0.00 0.00 2.52
6766 7103 5.343058 CGTTCGGAATTACTCGTACAAGAAA 59.657 40.000 0.00 0.00 0.00 2.52
6767 7104 6.034256 CGTTCGGAATTACTCGTACAAGAAAT 59.966 38.462 0.00 0.00 0.00 2.17
6768 7105 6.880822 TCGGAATTACTCGTACAAGAAATG 57.119 37.500 0.00 0.00 0.00 2.32
6769 7106 6.623486 TCGGAATTACTCGTACAAGAAATGA 58.377 36.000 0.00 0.00 0.00 2.57
6770 7107 7.092079 TCGGAATTACTCGTACAAGAAATGAA 58.908 34.615 0.00 0.00 0.00 2.57
6771 7108 7.762615 TCGGAATTACTCGTACAAGAAATGAAT 59.237 33.333 0.00 0.00 0.00 2.57
6772 7109 7.846107 CGGAATTACTCGTACAAGAAATGAATG 59.154 37.037 0.00 0.00 0.00 2.67
6773 7110 8.665685 GGAATTACTCGTACAAGAAATGAATGT 58.334 33.333 0.00 0.00 0.00 2.71
6779 7116 9.737427 ACTCGTACAAGAAATGAATGTATCTAG 57.263 33.333 0.00 0.00 0.00 2.43
6780 7117 9.952188 CTCGTACAAGAAATGAATGTATCTAGA 57.048 33.333 0.00 0.00 0.00 2.43
6835 7172 9.921637 TTATCCATTTTTGTGACAAGTAATTCC 57.078 29.630 0.00 0.00 0.00 3.01
6836 7173 6.442952 TCCATTTTTGTGACAAGTAATTCCG 58.557 36.000 0.00 0.00 0.00 4.30
6837 7174 6.263392 TCCATTTTTGTGACAAGTAATTCCGA 59.737 34.615 0.00 0.00 0.00 4.55
6838 7175 6.920758 CCATTTTTGTGACAAGTAATTCCGAA 59.079 34.615 0.00 0.00 0.00 4.30
6839 7176 7.096230 CCATTTTTGTGACAAGTAATTCCGAAC 60.096 37.037 0.00 0.00 0.00 3.95
6840 7177 4.718858 TTGTGACAAGTAATTCCGAACG 57.281 40.909 0.00 0.00 0.00 3.95
6841 7178 3.061322 TGTGACAAGTAATTCCGAACGG 58.939 45.455 6.94 6.94 0.00 4.44
6842 7179 3.243805 TGTGACAAGTAATTCCGAACGGA 60.244 43.478 12.04 12.04 43.52 4.69
6843 7180 3.367025 GTGACAAGTAATTCCGAACGGAG 59.633 47.826 15.34 5.60 46.06 4.63
6844 7181 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
6845 7182 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
6846 7183 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
6847 7184 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
6848 7185 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
6849 7186 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
6878 7215 5.182001 CCTGCAAAGCACTTAACAGATACTT 59.818 40.000 11.97 0.00 33.79 2.24
6883 7220 5.346181 AGCACTTAACAGATACTTCCTCC 57.654 43.478 0.00 0.00 0.00 4.30
6886 7223 5.721232 CACTTAACAGATACTTCCTCCGTT 58.279 41.667 0.00 0.00 0.00 4.44
6887 7224 5.805994 CACTTAACAGATACTTCCTCCGTTC 59.194 44.000 0.00 0.00 0.00 3.95
6888 7225 3.505464 AACAGATACTTCCTCCGTTCG 57.495 47.619 0.00 0.00 0.00 3.95
6889 7226 1.749634 ACAGATACTTCCTCCGTTCGG 59.250 52.381 4.74 4.74 0.00 4.30
6890 7227 2.022195 CAGATACTTCCTCCGTTCGGA 58.978 52.381 13.34 13.34 0.00 4.55
6895 7232 3.242549 ACTTCCTCCGTTCGGAAATAC 57.757 47.619 14.79 0.00 39.86 1.89
6896 7233 2.830321 ACTTCCTCCGTTCGGAAATACT 59.170 45.455 14.79 0.00 39.86 2.12
6897 7234 3.260128 ACTTCCTCCGTTCGGAAATACTT 59.740 43.478 14.79 0.00 39.86 2.24
6899 7236 2.564062 TCCTCCGTTCGGAAATACTTGT 59.436 45.455 14.79 0.00 33.41 3.16
6900 7237 2.928116 CCTCCGTTCGGAAATACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
6901 7238 3.581755 CTCCGTTCGGAAATACTTGTCA 58.418 45.455 14.79 0.00 33.41 3.58
6902 7239 4.181578 CTCCGTTCGGAAATACTTGTCAT 58.818 43.478 14.79 0.00 33.41 3.06
6904 7241 5.722263 TCCGTTCGGAAATACTTGTCATTA 58.278 37.500 11.66 0.00 0.00 1.90
6905 7242 6.164876 TCCGTTCGGAAATACTTGTCATTAA 58.835 36.000 11.66 0.00 0.00 1.40
6906 7243 6.649973 TCCGTTCGGAAATACTTGTCATTAAA 59.350 34.615 11.66 0.00 0.00 1.52
6908 7245 7.966204 CCGTTCGGAAATACTTGTCATTAAAAT 59.034 33.333 5.19 0.00 0.00 1.82
6909 7246 8.785101 CGTTCGGAAATACTTGTCATTAAAATG 58.215 33.333 0.00 0.00 37.75 2.32
6910 7247 9.072294 GTTCGGAAATACTTGTCATTAAAATGG 57.928 33.333 3.00 0.00 37.03 3.16
6912 7249 9.184523 TCGGAAATACTTGTCATTAAAATGGAT 57.815 29.630 3.00 0.00 37.03 3.41
6913 7250 9.236691 CGGAAATACTTGTCATTAAAATGGATG 57.763 33.333 3.00 0.00 37.03 3.51
6966 7303 9.643693 ACATTCATTTTGATGACAAGTAATTCC 57.356 29.630 0.00 0.00 37.32 3.01
6967 7304 8.800972 CATTCATTTTGATGACAAGTAATTCCG 58.199 33.333 0.00 0.00 37.32 4.30
6968 7305 7.680442 TCATTTTGATGACAAGTAATTCCGA 57.320 32.000 0.00 0.00 37.32 4.55
6971 7308 6.869315 TTTGATGACAAGTAATTCCGAACA 57.131 33.333 0.00 0.00 37.32 3.18
6993 7331 6.583562 ACAGAGGGAGTACTATTTTATGTGC 58.416 40.000 0.00 0.00 0.00 4.57
7009 7347 3.423154 GCCCGTTGCGTGAAGAGG 61.423 66.667 0.00 0.00 0.00 3.69
7021 7359 4.819630 TGCGTGAAGAGGAAACAGTTTTAT 59.180 37.500 0.00 0.00 0.00 1.40
7026 7364 8.531530 CGTGAAGAGGAAACAGTTTTATTTTTG 58.468 33.333 0.00 0.00 0.00 2.44
7036 7374 5.879777 ACAGTTTTATTTTTGGCAAAGCACT 59.120 32.000 13.04 7.23 0.00 4.40
7081 7419 0.691078 AGTCCACCACACTCCACAGT 60.691 55.000 0.00 0.00 0.00 3.55
7097 7436 3.427503 CCACAGTAATCGGAAAATGCCAC 60.428 47.826 0.00 0.00 0.00 5.01
7098 7437 2.418628 ACAGTAATCGGAAAATGCCACG 59.581 45.455 0.00 0.00 0.00 4.94
7102 7441 5.007234 CAGTAATCGGAAAATGCCACGAATA 59.993 40.000 0.00 0.00 38.94 1.75
7252 7593 1.202592 TGAGCCTTCACAACGCAACTA 60.203 47.619 0.00 0.00 0.00 2.24
7256 7597 1.468520 CCTTCACAACGCAACTATGGG 59.531 52.381 0.00 0.00 44.57 4.00
7257 7598 1.468520 CTTCACAACGCAACTATGGGG 59.531 52.381 0.00 0.00 43.40 4.96
7258 7599 0.322098 TCACAACGCAACTATGGGGG 60.322 55.000 0.00 0.00 43.40 5.40
7274 7615 2.403252 GGGGGTGTTGAGTGTATCAG 57.597 55.000 0.00 0.00 39.68 2.90
7282 7623 4.867047 GTGTTGAGTGTATCAGGTGATGAG 59.133 45.833 2.56 0.00 42.53 2.90
7298 7639 5.662208 GGTGATGAGGATGATCCATCTAGAT 59.338 44.000 14.90 0.00 40.39 1.98
7299 7640 6.407187 GGTGATGAGGATGATCCATCTAGATG 60.407 46.154 23.53 23.53 40.39 2.90
7322 7663 4.921470 ATGTCACGTTACATGTGCTAAC 57.079 40.909 14.35 4.17 38.65 2.34
7333 7674 8.128582 CGTTACATGTGCTAACATATCCAAAAT 58.871 33.333 9.11 0.00 45.50 1.82
7379 7720 2.050144 AGTGACAACTGTGGGAGTGAT 58.950 47.619 0.00 0.00 34.48 3.06
7417 7758 3.056250 GGATCGTCCATCTAGATGCATGT 60.056 47.826 24.81 1.37 36.28 3.21
7458 7799 7.064490 GGCTTTCAAAAGATTGAGTCACAAAAA 59.936 33.333 6.67 0.00 45.82 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
210 211 0.034089 ACAAGCTGGGTTATGGCCTC 60.034 55.000 3.32 0.00 0.00 4.70
883 885 1.335964 GGCAGAAAAGGAAAAGCCGTC 60.336 52.381 0.00 0.00 43.43 4.79
937 957 1.296715 CCTTGAACCCCAGAGACGG 59.703 63.158 0.00 0.00 0.00 4.79
939 959 0.322008 CAGCCTTGAACCCCAGAGAC 60.322 60.000 0.00 0.00 0.00 3.36
940 960 0.768221 ACAGCCTTGAACCCCAGAGA 60.768 55.000 0.00 0.00 0.00 3.10
941 961 0.607489 CACAGCCTTGAACCCCAGAG 60.607 60.000 0.00 0.00 0.00 3.35
942 962 1.059584 TCACAGCCTTGAACCCCAGA 61.060 55.000 0.00 0.00 0.00 3.86
1083 1103 1.187087 GGAAGGCGAGAAGGAGAGAA 58.813 55.000 0.00 0.00 0.00 2.87
1107 1127 1.364678 TGGTGGAATAGAGGGAGGTCA 59.635 52.381 0.00 0.00 0.00 4.02
1217 1237 3.005554 CTGAGAGATGGCACGAAACAAT 58.994 45.455 0.00 0.00 0.00 2.71
1218 1238 2.416747 CTGAGAGATGGCACGAAACAA 58.583 47.619 0.00 0.00 0.00 2.83
1230 1250 0.466372 TCGCCGATGACCTGAGAGAT 60.466 55.000 0.00 0.00 0.00 2.75
1379 1399 6.408035 TCAAGTCTGTGGTTACAACTTACAA 58.592 36.000 0.00 0.00 36.71 2.41
1380 1400 5.979993 TCAAGTCTGTGGTTACAACTTACA 58.020 37.500 0.00 0.00 36.71 2.41
1381 1401 6.913873 TTCAAGTCTGTGGTTACAACTTAC 57.086 37.500 0.00 0.00 36.71 2.34
1382 1402 8.514330 AATTTCAAGTCTGTGGTTACAACTTA 57.486 30.769 0.00 0.00 36.71 2.24
1383 1403 7.404671 AATTTCAAGTCTGTGGTTACAACTT 57.595 32.000 0.00 0.00 37.99 2.66
1384 1404 7.093945 ACAAATTTCAAGTCTGTGGTTACAACT 60.094 33.333 0.00 0.00 36.14 3.16
1385 1405 7.033185 ACAAATTTCAAGTCTGTGGTTACAAC 58.967 34.615 0.00 0.00 36.14 3.32
1413 1433 8.491152 CCGCATTGACAAATTACAAATTACAAA 58.509 29.630 0.00 0.00 0.00 2.83
1414 1434 7.359598 GCCGCATTGACAAATTACAAATTACAA 60.360 33.333 0.00 0.00 0.00 2.41
1415 1435 6.090088 GCCGCATTGACAAATTACAAATTACA 59.910 34.615 0.00 0.00 0.00 2.41
1416 1436 6.310224 AGCCGCATTGACAAATTACAAATTAC 59.690 34.615 0.00 0.00 0.00 1.89
1417 1437 6.393990 AGCCGCATTGACAAATTACAAATTA 58.606 32.000 0.00 0.00 0.00 1.40
1418 1438 5.237048 AGCCGCATTGACAAATTACAAATT 58.763 33.333 0.00 0.00 0.00 1.82
1419 1439 4.819769 AGCCGCATTGACAAATTACAAAT 58.180 34.783 0.00 0.00 0.00 2.32
1420 1440 4.233789 GAGCCGCATTGACAAATTACAAA 58.766 39.130 0.00 0.00 0.00 2.83
1421 1441 3.254411 TGAGCCGCATTGACAAATTACAA 59.746 39.130 0.00 0.00 0.00 2.41
1422 1442 2.816672 TGAGCCGCATTGACAAATTACA 59.183 40.909 0.00 0.00 0.00 2.41
1423 1443 3.485947 TGAGCCGCATTGACAAATTAC 57.514 42.857 0.00 0.00 0.00 1.89
1424 1444 4.717233 AATGAGCCGCATTGACAAATTA 57.283 36.364 0.00 0.00 45.27 1.40
1425 1445 3.598019 AATGAGCCGCATTGACAAATT 57.402 38.095 0.00 0.00 45.27 1.82
1507 1533 2.554142 CACAGACTTCACTGCTGAACA 58.446 47.619 0.00 0.00 41.06 3.18
1509 1535 1.202687 CCCACAGACTTCACTGCTGAA 60.203 52.381 0.00 0.00 41.06 3.02
1510 1536 0.394192 CCCACAGACTTCACTGCTGA 59.606 55.000 0.00 0.00 41.06 4.26
1511 1537 0.604780 CCCCACAGACTTCACTGCTG 60.605 60.000 0.00 0.00 41.06 4.41
1638 1664 1.068610 GCGCCTGCAGAAATACAAACA 60.069 47.619 17.39 0.00 42.15 2.83
1774 1800 1.133809 AGTTTAGTGCCTGCCTCCCA 61.134 55.000 0.00 0.00 0.00 4.37
1776 1802 1.168714 CAAGTTTAGTGCCTGCCTCC 58.831 55.000 0.00 0.00 0.00 4.30
1777 1803 1.807142 GACAAGTTTAGTGCCTGCCTC 59.193 52.381 0.00 0.00 0.00 4.70
1779 1805 0.881796 GGACAAGTTTAGTGCCTGCC 59.118 55.000 0.00 0.00 0.00 4.85
1903 1995 3.775261 AAAGCAAATTGCCATCCTTGT 57.225 38.095 15.04 0.00 46.52 3.16
1904 1996 3.619929 GCTAAAGCAAATTGCCATCCTTG 59.380 43.478 15.04 0.45 46.52 3.61
1942 2034 3.489059 CGTGACATGTTCAGTTTTTGCCT 60.489 43.478 0.00 0.00 33.71 4.75
2090 2183 1.420138 GGACACCTCAGGAAACAGGAA 59.580 52.381 0.00 0.00 33.52 3.36
2306 2399 8.474025 ACAGGTCAAACTAAAACAATGATTTGA 58.526 29.630 0.00 0.00 36.64 2.69
2314 2407 7.087639 CACAGAAACAGGTCAAACTAAAACAA 58.912 34.615 0.00 0.00 0.00 2.83
2378 2471 6.982141 GCATGGCAGATGAATAATTCTTCAAA 59.018 34.615 9.97 0.00 38.55 2.69
2626 2719 1.055849 TGGTTCTGCTGCCAGTTAGA 58.944 50.000 0.00 0.00 40.09 2.10
2890 2983 8.965819 TGTATGCACCTCAAATAAACACATAAT 58.034 29.630 0.00 0.00 0.00 1.28
3042 3140 7.791029 TCAGGATAATCTGCATACAACTGTTA 58.209 34.615 0.00 0.00 34.91 2.41
3220 3318 8.798859 AGATCAACTGCATTACTGTTAGATTT 57.201 30.769 0.00 0.00 38.27 2.17
3271 3369 1.598701 GAGTTTGGAGCCATGCACCC 61.599 60.000 0.00 0.00 38.50 4.61
3461 3559 8.020819 CAGAAAATGGTAAGCTCGTATGAAAAA 58.979 33.333 0.00 0.00 0.00 1.94
3544 3764 2.100631 CACTAAGCTCCGCCGTTGG 61.101 63.158 0.00 0.00 0.00 3.77
3547 3767 2.095978 AACACACTAAGCTCCGCCGT 62.096 55.000 0.00 0.00 0.00 5.68
3548 3768 1.374252 AACACACTAAGCTCCGCCG 60.374 57.895 0.00 0.00 0.00 6.46
3549 3769 1.912371 GCAACACACTAAGCTCCGCC 61.912 60.000 0.00 0.00 0.00 6.13
3550 3770 0.951040 AGCAACACACTAAGCTCCGC 60.951 55.000 0.00 0.00 30.05 5.54
3551 3771 0.792640 CAGCAACACACTAAGCTCCG 59.207 55.000 0.00 0.00 34.61 4.63
3552 3772 1.160137 CCAGCAACACACTAAGCTCC 58.840 55.000 0.00 0.00 34.61 4.70
3553 3773 1.160137 CCCAGCAACACACTAAGCTC 58.840 55.000 0.00 0.00 34.61 4.09
3554 3774 0.250901 CCCCAGCAACACACTAAGCT 60.251 55.000 0.00 0.00 37.95 3.74
3555 3775 1.244019 CCCCCAGCAACACACTAAGC 61.244 60.000 0.00 0.00 0.00 3.09
3556 3776 2.946947 CCCCCAGCAACACACTAAG 58.053 57.895 0.00 0.00 0.00 2.18
3589 3809 1.286501 GCTTGCATGTGCCAATCATG 58.713 50.000 2.07 0.00 43.58 3.07
3590 3810 0.899019 TGCTTGCATGTGCCAATCAT 59.101 45.000 2.07 0.00 41.18 2.45
3591 3811 0.899019 ATGCTTGCATGTGCCAATCA 59.101 45.000 7.35 0.39 41.18 2.57
3592 3812 2.875087 TATGCTTGCATGTGCCAATC 57.125 45.000 17.26 0.00 41.18 2.67
3593 3813 5.477607 AATATATGCTTGCATGTGCCAAT 57.522 34.783 17.26 5.18 41.18 3.16
3594 3814 4.940905 AATATATGCTTGCATGTGCCAA 57.059 36.364 17.26 0.00 41.18 4.52
3595 3815 4.940905 AAATATATGCTTGCATGTGCCA 57.059 36.364 17.26 0.00 41.18 4.92
3615 3835 9.256228 TCATAACCTAAGCTCTCTCTCTAAAAA 57.744 33.333 0.00 0.00 0.00 1.94
3616 3836 8.824756 TCATAACCTAAGCTCTCTCTCTAAAA 57.175 34.615 0.00 0.00 0.00 1.52
3617 3837 8.824756 TTCATAACCTAAGCTCTCTCTCTAAA 57.175 34.615 0.00 0.00 0.00 1.85
3618 3838 8.688151 GTTTCATAACCTAAGCTCTCTCTCTAA 58.312 37.037 0.00 0.00 0.00 2.10
3619 3839 8.056400 AGTTTCATAACCTAAGCTCTCTCTCTA 58.944 37.037 0.00 0.00 34.71 2.43
3620 3840 6.895204 AGTTTCATAACCTAAGCTCTCTCTCT 59.105 38.462 0.00 0.00 34.71 3.10
3621 3841 7.107639 AGTTTCATAACCTAAGCTCTCTCTC 57.892 40.000 0.00 0.00 34.71 3.20
3622 3842 7.489239 AAGTTTCATAACCTAAGCTCTCTCT 57.511 36.000 0.00 0.00 34.71 3.10
3623 3843 7.604545 ACAAAGTTTCATAACCTAAGCTCTCTC 59.395 37.037 0.00 0.00 34.71 3.20
3624 3844 7.389053 CACAAAGTTTCATAACCTAAGCTCTCT 59.611 37.037 0.00 0.00 34.71 3.10
3625 3845 7.173390 ACACAAAGTTTCATAACCTAAGCTCTC 59.827 37.037 0.00 0.00 34.71 3.20
3626 3846 6.998673 ACACAAAGTTTCATAACCTAAGCTCT 59.001 34.615 0.00 0.00 34.71 4.09
3627 3847 7.078228 CACACAAAGTTTCATAACCTAAGCTC 58.922 38.462 0.00 0.00 34.71 4.09
3628 3848 6.546034 ACACACAAAGTTTCATAACCTAAGCT 59.454 34.615 0.00 0.00 34.71 3.74
3629 3849 6.735130 ACACACAAAGTTTCATAACCTAAGC 58.265 36.000 0.00 0.00 34.71 3.09
3630 3850 9.019764 CAAACACACAAAGTTTCATAACCTAAG 57.980 33.333 0.00 0.00 37.10 2.18
3631 3851 8.918961 CAAACACACAAAGTTTCATAACCTAA 57.081 30.769 0.00 0.00 37.10 2.69
4046 4266 1.541310 TAGTTCCCGGCCTGACAGTG 61.541 60.000 0.00 0.00 0.00 3.66
4355 4577 9.754382 ATGGATTTCATACAAACAATAGCAATC 57.246 29.630 0.00 0.00 33.61 2.67
4588 4817 0.865769 AACACCGCGTGCTTAAGAAG 59.134 50.000 6.67 0.00 36.98 2.85
4589 4818 2.151881 TAACACCGCGTGCTTAAGAA 57.848 45.000 6.67 0.00 36.98 2.52
4590 4819 2.264813 GATAACACCGCGTGCTTAAGA 58.735 47.619 6.67 0.00 36.98 2.10
4685 4914 7.448469 ACCAAGCTATAACTTCAACATTTCACT 59.552 33.333 0.00 0.00 0.00 3.41
4689 4918 9.243105 ACATACCAAGCTATAACTTCAACATTT 57.757 29.630 0.00 0.00 0.00 2.32
5219 5456 7.652909 GGACAACAAAATGAATCAATGACAAGA 59.347 33.333 0.00 0.00 0.00 3.02
5753 5990 7.741554 ACTTCTTTATCTGTTGTAGGGATCT 57.258 36.000 0.00 0.00 0.00 2.75
6015 6254 4.744570 TGTATTTCTCAGTAGGCGAGTTG 58.255 43.478 0.00 0.00 0.00 3.16
6022 6261 4.962995 TCTCCCCTTGTATTTCTCAGTAGG 59.037 45.833 0.00 0.00 0.00 3.18
6168 6505 5.570320 AGTGGGTTATGTGAAGCTGTAATT 58.430 37.500 0.00 0.00 0.00 1.40
6399 6736 6.096705 CAGGGCATCAACATAAGGTAAAATCA 59.903 38.462 0.00 0.00 0.00 2.57
6453 6790 1.638133 CTGTGATCGTCAAGGAGCTG 58.362 55.000 0.00 0.00 0.00 4.24
6482 6819 2.159338 GGTGCACATTTCTGCGATGATT 60.159 45.455 20.43 0.00 40.31 2.57
6486 6823 1.538047 AAGGTGCACATTTCTGCGAT 58.462 45.000 20.43 0.00 40.31 4.58
6505 6842 5.702670 GTCAGTTCATCCATTCTCAGTGAAA 59.297 40.000 0.00 0.00 38.29 2.69
6509 6846 3.854666 CGTCAGTTCATCCATTCTCAGT 58.145 45.455 0.00 0.00 0.00 3.41
6619 6956 4.188462 TGCAGGGATAAGATTGTAACACG 58.812 43.478 0.00 0.00 0.00 4.49
6633 6970 3.134623 TCAGAATCGTACATTGCAGGGAT 59.865 43.478 0.00 0.00 0.00 3.85
6677 7014 7.327975 ACGCGGAATCATTAGGAAATATCATA 58.672 34.615 12.47 0.00 0.00 2.15
6735 7072 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
6736 7073 1.753073 GAGTAATTCCGAACGGAGGGA 59.247 52.381 15.34 2.49 46.06 4.20
6737 7074 1.535437 CGAGTAATTCCGAACGGAGGG 60.535 57.143 15.34 0.00 46.06 4.30
6738 7075 1.133790 ACGAGTAATTCCGAACGGAGG 59.866 52.381 15.34 4.28 46.06 4.30
6739 7076 2.556534 ACGAGTAATTCCGAACGGAG 57.443 50.000 15.34 5.60 46.06 4.63
6740 7077 2.746904 TGTACGAGTAATTCCGAACGGA 59.253 45.455 12.04 12.04 43.52 4.69
6741 7078 3.135414 TGTACGAGTAATTCCGAACGG 57.865 47.619 6.94 6.94 0.00 4.44
6742 7079 4.406069 TCTTGTACGAGTAATTCCGAACG 58.594 43.478 10.00 0.00 0.00 3.95
6743 7080 6.695292 TTTCTTGTACGAGTAATTCCGAAC 57.305 37.500 10.00 0.00 0.00 3.95
6744 7081 7.092079 TCATTTCTTGTACGAGTAATTCCGAA 58.908 34.615 11.25 0.00 0.00 4.30
6745 7082 6.623486 TCATTTCTTGTACGAGTAATTCCGA 58.377 36.000 11.25 5.06 0.00 4.55
6746 7083 6.880822 TCATTTCTTGTACGAGTAATTCCG 57.119 37.500 11.25 3.13 0.00 4.30
6747 7084 8.665685 ACATTCATTTCTTGTACGAGTAATTCC 58.334 33.333 11.25 0.00 0.00 3.01
6753 7090 9.737427 CTAGATACATTCATTTCTTGTACGAGT 57.263 33.333 10.00 0.00 0.00 4.18
6754 7091 9.952188 TCTAGATACATTCATTTCTTGTACGAG 57.048 33.333 3.44 3.44 0.00 4.18
6809 7146 9.921637 GGAATTACTTGTCACAAAAATGGATAA 57.078 29.630 0.00 0.00 0.00 1.75
6810 7147 8.240682 CGGAATTACTTGTCACAAAAATGGATA 58.759 33.333 0.00 0.00 0.00 2.59
6811 7148 7.040062 TCGGAATTACTTGTCACAAAAATGGAT 60.040 33.333 0.00 0.00 0.00 3.41
6812 7149 6.263392 TCGGAATTACTTGTCACAAAAATGGA 59.737 34.615 0.00 0.00 0.00 3.41
6813 7150 6.442952 TCGGAATTACTTGTCACAAAAATGG 58.557 36.000 0.00 0.00 0.00 3.16
6814 7151 7.357206 CGTTCGGAATTACTTGTCACAAAAATG 60.357 37.037 0.00 0.00 0.00 2.32
6815 7152 6.635239 CGTTCGGAATTACTTGTCACAAAAAT 59.365 34.615 0.00 0.00 0.00 1.82
6816 7153 5.966503 CGTTCGGAATTACTTGTCACAAAAA 59.033 36.000 0.00 0.00 0.00 1.94
6817 7154 5.503498 CGTTCGGAATTACTTGTCACAAAA 58.497 37.500 0.00 0.00 0.00 2.44
6818 7155 4.024725 CCGTTCGGAATTACTTGTCACAAA 60.025 41.667 5.19 0.00 0.00 2.83
6819 7156 3.495377 CCGTTCGGAATTACTTGTCACAA 59.505 43.478 5.19 0.00 0.00 3.33
6820 7157 3.061322 CCGTTCGGAATTACTTGTCACA 58.939 45.455 5.19 0.00 0.00 3.58
6821 7158 3.319755 TCCGTTCGGAATTACTTGTCAC 58.680 45.455 11.66 0.00 0.00 3.67
6822 7159 3.581755 CTCCGTTCGGAATTACTTGTCA 58.418 45.455 14.79 0.00 33.41 3.58
6823 7160 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
6824 7161 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
6825 7162 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
6826 7163 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
6827 7164 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
6828 7165 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
6829 7166 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
6830 7167 1.856629 TACTCCCTCCGTTCGGAATT 58.143 50.000 14.79 0.00 33.41 2.17
6831 7168 2.083628 ATACTCCCTCCGTTCGGAAT 57.916 50.000 14.79 2.14 33.41 3.01
6832 7169 1.856629 AATACTCCCTCCGTTCGGAA 58.143 50.000 14.79 0.00 33.41 4.30
6833 7170 2.579873 CTAATACTCCCTCCGTTCGGA 58.420 52.381 13.34 13.34 0.00 4.55
6834 7171 1.000496 GCTAATACTCCCTCCGTTCGG 60.000 57.143 4.74 4.74 0.00 4.30
6835 7172 1.000496 GGCTAATACTCCCTCCGTTCG 60.000 57.143 0.00 0.00 0.00 3.95
6836 7173 2.036089 CAGGCTAATACTCCCTCCGTTC 59.964 54.545 0.00 0.00 0.00 3.95
6837 7174 2.040178 CAGGCTAATACTCCCTCCGTT 58.960 52.381 0.00 0.00 0.00 4.44
6838 7175 1.705873 CAGGCTAATACTCCCTCCGT 58.294 55.000 0.00 0.00 0.00 4.69
6839 7176 0.318762 GCAGGCTAATACTCCCTCCG 59.681 60.000 0.00 0.00 0.00 4.63
6840 7177 1.424638 TGCAGGCTAATACTCCCTCC 58.575 55.000 0.00 0.00 0.00 4.30
6841 7178 3.471680 CTTTGCAGGCTAATACTCCCTC 58.528 50.000 0.00 0.00 0.00 4.30
6842 7179 2.422093 GCTTTGCAGGCTAATACTCCCT 60.422 50.000 6.51 0.00 0.00 4.20
6843 7180 1.950216 GCTTTGCAGGCTAATACTCCC 59.050 52.381 6.51 0.00 0.00 4.30
6844 7181 2.356069 GTGCTTTGCAGGCTAATACTCC 59.644 50.000 13.44 0.00 40.08 3.85
6845 7182 3.274288 AGTGCTTTGCAGGCTAATACTC 58.726 45.455 13.44 0.00 40.08 2.59
6846 7183 3.356529 AGTGCTTTGCAGGCTAATACT 57.643 42.857 13.44 6.88 40.08 2.12
6847 7184 5.106317 TGTTAAGTGCTTTGCAGGCTAATAC 60.106 40.000 13.44 5.04 40.08 1.89
6848 7185 5.007034 TGTTAAGTGCTTTGCAGGCTAATA 58.993 37.500 13.44 2.47 40.08 0.98
6849 7186 3.826157 TGTTAAGTGCTTTGCAGGCTAAT 59.174 39.130 13.44 4.08 40.08 1.73
6878 7215 2.564062 ACAAGTATTTCCGAACGGAGGA 59.436 45.455 15.34 9.43 46.06 3.71
6883 7220 8.785101 CATTTTAATGACAAGTATTTCCGAACG 58.215 33.333 0.00 0.00 38.70 3.95
6886 7223 8.568676 TCCATTTTAATGACAAGTATTTCCGA 57.431 30.769 4.07 0.00 38.70 4.55
6887 7224 9.236691 CATCCATTTTAATGACAAGTATTTCCG 57.763 33.333 4.07 0.00 38.70 4.30
6940 7277 9.643693 GGAATTACTTGTCATCAAAATGAATGT 57.356 29.630 0.00 0.00 43.42 2.71
6941 7278 8.800972 CGGAATTACTTGTCATCAAAATGAATG 58.199 33.333 0.00 0.00 43.42 2.67
6943 7280 8.105097 TCGGAATTACTTGTCATCAAAATGAA 57.895 30.769 0.00 0.00 43.42 2.57
6945 7282 7.807433 TGTTCGGAATTACTTGTCATCAAAATG 59.193 33.333 0.00 0.00 32.87 2.32
6946 7283 7.881142 TGTTCGGAATTACTTGTCATCAAAAT 58.119 30.769 0.00 0.00 32.87 1.82
6947 7284 7.227711 TCTGTTCGGAATTACTTGTCATCAAAA 59.772 33.333 0.00 0.00 32.87 2.44
6948 7285 6.708502 TCTGTTCGGAATTACTTGTCATCAAA 59.291 34.615 0.00 0.00 32.87 2.69
6949 7286 6.227522 TCTGTTCGGAATTACTTGTCATCAA 58.772 36.000 0.00 0.00 0.00 2.57
6950 7287 5.789521 TCTGTTCGGAATTACTTGTCATCA 58.210 37.500 0.00 0.00 0.00 3.07
6951 7288 5.292101 CCTCTGTTCGGAATTACTTGTCATC 59.708 44.000 0.00 0.00 0.00 2.92
6952 7289 5.178797 CCTCTGTTCGGAATTACTTGTCAT 58.821 41.667 0.00 0.00 0.00 3.06
6953 7290 4.562757 CCCTCTGTTCGGAATTACTTGTCA 60.563 45.833 0.00 0.00 0.00 3.58
6954 7291 3.933332 CCCTCTGTTCGGAATTACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
6955 7292 3.581332 TCCCTCTGTTCGGAATTACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
6956 7293 4.184629 CTCCCTCTGTTCGGAATTACTTG 58.815 47.826 0.00 0.00 0.00 3.16
6957 7294 3.838903 ACTCCCTCTGTTCGGAATTACTT 59.161 43.478 0.00 0.00 0.00 2.24
6958 7295 3.442076 ACTCCCTCTGTTCGGAATTACT 58.558 45.455 0.00 0.00 0.00 2.24
6959 7296 3.889520 ACTCCCTCTGTTCGGAATTAC 57.110 47.619 0.00 0.00 0.00 1.89
6960 7297 4.607239 AGTACTCCCTCTGTTCGGAATTA 58.393 43.478 0.00 0.00 0.00 1.40
6961 7298 3.442076 AGTACTCCCTCTGTTCGGAATT 58.558 45.455 0.00 0.00 0.00 2.17
6962 7299 3.103080 AGTACTCCCTCTGTTCGGAAT 57.897 47.619 0.00 0.00 0.00 3.01
6963 7300 2.599408 AGTACTCCCTCTGTTCGGAA 57.401 50.000 0.00 0.00 0.00 4.30
6964 7301 3.947612 ATAGTACTCCCTCTGTTCGGA 57.052 47.619 0.00 0.00 0.00 4.55
6965 7302 5.340439 AAAATAGTACTCCCTCTGTTCGG 57.660 43.478 0.00 0.00 0.00 4.30
6966 7303 7.435488 CACATAAAATAGTACTCCCTCTGTTCG 59.565 40.741 0.00 0.00 0.00 3.95
6967 7304 7.224949 GCACATAAAATAGTACTCCCTCTGTTC 59.775 40.741 0.00 0.00 0.00 3.18
6968 7305 7.048512 GCACATAAAATAGTACTCCCTCTGTT 58.951 38.462 0.00 0.00 0.00 3.16
6971 7308 5.071923 GGGCACATAAAATAGTACTCCCTCT 59.928 44.000 0.00 0.00 0.00 3.69
6993 7331 0.882927 TTTCCTCTTCACGCAACGGG 60.883 55.000 0.00 0.00 0.00 5.28
7009 7347 7.218014 GTGCTTTGCCAAAAATAAAACTGTTTC 59.782 33.333 6.20 0.00 0.00 2.78
7021 7359 6.160576 AGAGAATTAGTGCTTTGCCAAAAA 57.839 33.333 0.00 0.00 0.00 1.94
7026 7364 3.127721 GGTGAGAGAATTAGTGCTTTGCC 59.872 47.826 0.00 0.00 0.00 4.52
7036 7374 6.373005 TTGATTGGTGAGGTGAGAGAATTA 57.627 37.500 0.00 0.00 0.00 1.40
7081 7419 5.760743 TCATATTCGTGGCATTTTCCGATTA 59.239 36.000 0.00 0.00 0.00 1.75
7097 7436 8.586273 GTTTGATTTGTGTCCATTTCATATTCG 58.414 33.333 0.00 0.00 0.00 3.34
7098 7437 9.643693 AGTTTGATTTGTGTCCATTTCATATTC 57.356 29.630 0.00 0.00 0.00 1.75
7102 7441 7.053316 TCAGTTTGATTTGTGTCCATTTCAT 57.947 32.000 0.00 0.00 0.00 2.57
7145 7484 1.282157 GGTGTGCTTAGGGTCCTCATT 59.718 52.381 0.00 0.00 0.00 2.57
7152 7491 0.328258 GACATGGGTGTGCTTAGGGT 59.672 55.000 0.00 0.00 39.09 4.34
7200 7541 8.623030 TGTAAAAAGCCTCGTACAAGTTTTTAT 58.377 29.630 5.76 0.73 33.97 1.40
7201 7542 7.983307 TGTAAAAAGCCTCGTACAAGTTTTTA 58.017 30.769 0.00 0.00 31.45 1.52
7256 7597 1.628846 ACCTGATACACTCAACACCCC 59.371 52.381 0.00 0.00 32.14 4.95
7257 7598 2.301870 TCACCTGATACACTCAACACCC 59.698 50.000 0.00 0.00 32.14 4.61
7258 7599 3.678056 TCACCTGATACACTCAACACC 57.322 47.619 0.00 0.00 32.14 4.16
7259 7600 4.820897 TCATCACCTGATACACTCAACAC 58.179 43.478 0.00 0.00 32.14 3.32
7261 7602 4.160439 TCCTCATCACCTGATACACTCAAC 59.840 45.833 0.00 0.00 32.14 3.18
7262 7603 4.352893 TCCTCATCACCTGATACACTCAA 58.647 43.478 0.00 0.00 32.14 3.02
7263 7604 3.981212 TCCTCATCACCTGATACACTCA 58.019 45.455 0.00 0.00 32.10 3.41
7264 7605 4.586421 TCATCCTCATCACCTGATACACTC 59.414 45.833 0.00 0.00 32.10 3.51
7265 7606 4.550669 TCATCCTCATCACCTGATACACT 58.449 43.478 0.00 0.00 32.10 3.55
7266 7607 4.944619 TCATCCTCATCACCTGATACAC 57.055 45.455 0.00 0.00 32.10 2.90
7267 7608 4.529769 GGATCATCCTCATCACCTGATACA 59.470 45.833 0.00 0.00 32.53 2.29
7268 7609 4.529769 TGGATCATCCTCATCACCTGATAC 59.470 45.833 4.96 0.00 37.46 2.24
7269 7610 4.755437 TGGATCATCCTCATCACCTGATA 58.245 43.478 4.96 0.00 37.46 2.15
7270 7611 3.595021 TGGATCATCCTCATCACCTGAT 58.405 45.455 4.96 0.00 37.46 2.90
7271 7612 3.050523 TGGATCATCCTCATCACCTGA 57.949 47.619 4.96 0.00 37.46 3.86
7272 7613 3.583526 AGATGGATCATCCTCATCACCTG 59.416 47.826 4.96 0.00 41.36 4.00
7273 7614 3.871810 AGATGGATCATCCTCATCACCT 58.128 45.455 4.96 0.00 41.36 4.00
7274 7615 5.022122 TCTAGATGGATCATCCTCATCACC 58.978 45.833 4.96 0.00 41.36 4.02
7282 7623 5.100344 ACATGCATCTAGATGGATCATCC 57.900 43.478 30.45 14.91 44.92 3.51
7333 7674 1.398692 AAAAAGCCTCGTCCAAGCAA 58.601 45.000 0.00 0.00 0.00 3.91
7379 7720 0.907704 ATCCTCGGCACCCTGTACAA 60.908 55.000 0.00 0.00 0.00 2.41
7417 7758 5.918426 TGAAAGCCTGCAAATATGATTGA 57.082 34.783 0.00 0.00 31.84 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.