Multiple sequence alignment - TraesCS1B01G204400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G204400 chr1B 100.000 3066 0 0 1 3066 368539349 368542414 0.000000e+00 5662.0
1 TraesCS1B01G204400 chr1B 100.000 2290 0 0 3584 5873 368542932 368545221 0.000000e+00 4229.0
2 TraesCS1B01G204400 chr1B 99.213 127 0 1 4934 5060 269261813 269261688 1.650000e-55 228.0
3 TraesCS1B01G204400 chr1B 96.296 54 1 1 5556 5609 368544872 368544924 2.920000e-13 87.9
4 TraesCS1B01G204400 chr1B 96.296 54 1 1 5524 5576 368544904 368544957 2.920000e-13 87.9
5 TraesCS1B01G204400 chr1B 93.333 60 3 1 5063 5121 626498579 626498520 2.920000e-13 87.9
6 TraesCS1B01G204400 chr1A 95.053 2345 75 14 654 2985 313752000 313749684 0.000000e+00 3650.0
7 TraesCS1B01G204400 chr1A 89.646 734 40 15 5146 5873 313748704 313748001 0.000000e+00 902.0
8 TraesCS1B01G204400 chr1A 97.802 364 5 3 3598 3960 313749360 313748999 5.000000e-175 625.0
9 TraesCS1B01G204400 chr1A 86.000 500 52 10 1 487 313752660 313752166 2.430000e-143 520.0
10 TraesCS1B01G204400 chr1A 93.846 260 16 0 4517 4776 313749005 313748746 5.520000e-105 392.0
11 TraesCS1B01G204400 chr1A 91.935 62 3 2 5063 5123 498452794 498452734 1.050000e-12 86.1
12 TraesCS1B01G204400 chr1D 90.303 2475 153 38 1 2436 233893110 233895536 0.000000e+00 3160.0
13 TraesCS1B01G204400 chr1D 90.275 874 59 13 4082 4932 233896478 233897348 0.000000e+00 1120.0
14 TraesCS1B01G204400 chr1D 88.813 733 49 19 5146 5873 233897357 233898061 0.000000e+00 869.0
15 TraesCS1B01G204400 chr1D 93.151 584 36 4 2476 3057 233895536 233896117 0.000000e+00 854.0
16 TraesCS1B01G204400 chr1D 91.633 251 17 4 3584 3831 233896161 233896410 1.570000e-90 344.0
17 TraesCS1B01G204400 chr1D 86.441 118 12 3 3963 4076 35756868 35756985 6.180000e-25 126.0
18 TraesCS1B01G204400 chr1D 93.939 66 3 1 3873 3938 233896413 233896477 1.350000e-16 99.0
19 TraesCS1B01G204400 chr1D 96.491 57 2 0 5071 5127 476229522 476229466 1.740000e-15 95.3
20 TraesCS1B01G204400 chr1D 96.226 53 2 0 5071 5123 449490166 449490218 2.920000e-13 87.9
21 TraesCS1B01G204400 chr1D 82.192 73 7 6 619 689 18859886 18859818 2.290000e-04 58.4
22 TraesCS1B01G204400 chr7D 89.082 403 39 4 4145 4545 33677505 33677904 4.090000e-136 496.0
23 TraesCS1B01G204400 chr7D 81.416 226 34 7 142 366 167547334 167547116 1.680000e-40 178.0
24 TraesCS1B01G204400 chr7D 80.603 232 41 4 137 364 633525201 633524970 6.050000e-40 176.0
25 TraesCS1B01G204400 chr7D 80.702 228 28 7 139 364 312574059 312573846 4.710000e-36 163.0
26 TraesCS1B01G204400 chr7B 85.217 230 29 4 137 364 151431080 151430854 1.270000e-56 231.0
27 TraesCS1B01G204400 chr7B 98.438 128 1 1 4933 5060 483806807 483806681 2.130000e-54 224.0
28 TraesCS1B01G204400 chr7B 79.389 262 45 7 112 371 111367328 111367074 6.050000e-40 176.0
29 TraesCS1B01G204400 chr7B 88.710 124 12 2 3963 4085 475307981 475308103 3.670000e-32 150.0
30 TraesCS1B01G204400 chr7B 77.419 217 44 5 149 364 79054863 79055075 2.220000e-24 124.0
31 TraesCS1B01G204400 chr7B 92.683 41 3 0 648 688 59954005 59954045 6.360000e-05 60.2
32 TraesCS1B01G204400 chr3B 98.438 128 1 1 4933 5060 760560999 760560873 2.130000e-54 224.0
33 TraesCS1B01G204400 chr3B 95.105 143 1 5 4919 5060 360009704 360009841 2.760000e-53 220.0
34 TraesCS1B01G204400 chrUn 98.413 126 1 1 4935 5060 401125181 401125057 2.760000e-53 220.0
35 TraesCS1B01G204400 chrUn 91.057 123 10 1 3963 4084 65138953 65138831 1.310000e-36 165.0
36 TraesCS1B01G204400 chrUn 86.087 115 14 2 3963 4076 22763200 22763087 7.990000e-24 122.0
37 TraesCS1B01G204400 chr2B 97.656 128 3 0 4933 5060 133004718 133004591 2.760000e-53 220.0
38 TraesCS1B01G204400 chr2B 97.638 127 3 0 4934 5060 959832 959958 9.910000e-53 219.0
39 TraesCS1B01G204400 chr2B 89.552 67 5 1 5072 5138 551551625 551551561 3.770000e-12 84.2
40 TraesCS1B01G204400 chr2D 97.656 128 2 1 4934 5060 383551070 383550943 9.910000e-53 219.0
41 TraesCS1B01G204400 chr2D 79.111 225 36 9 149 371 78433631 78433846 1.710000e-30 145.0
42 TraesCS1B01G204400 chr2D 86.555 119 12 2 3963 4080 31733412 31733297 1.720000e-25 128.0
43 TraesCS1B01G204400 chr2D 86.207 116 7 2 3962 4076 79387430 79387323 3.720000e-22 117.0
44 TraesCS1B01G204400 chr2D 98.113 53 1 0 5071 5123 215846505 215846453 6.270000e-15 93.5
45 TraesCS1B01G204400 chr2D 92.063 63 4 1 5062 5123 109700338 109700400 2.920000e-13 87.9
46 TraesCS1B01G204400 chr4B 97.638 127 2 1 4934 5060 47022047 47022172 3.560000e-52 217.0
47 TraesCS1B01G204400 chr4B 94.828 58 2 1 5071 5128 616316216 616316272 8.110000e-14 89.8
48 TraesCS1B01G204400 chr7A 83.478 230 30 6 137 364 341444519 341444296 2.140000e-49 207.0
49 TraesCS1B01G204400 chr6B 78.481 237 43 7 137 371 658243056 658242826 1.320000e-31 148.0
50 TraesCS1B01G204400 chr6B 87.603 121 11 2 3961 4077 365700753 365700873 2.850000e-28 137.0
51 TraesCS1B01G204400 chr6B 100.000 30 0 0 332 361 6175239 6175210 8.220000e-04 56.5
52 TraesCS1B01G204400 chr5D 78.541 233 30 9 139 368 482115123 482114908 1.030000e-27 135.0
53 TraesCS1B01G204400 chr5D 88.372 86 9 1 137 221 393749933 393750018 1.040000e-17 102.0
54 TraesCS1B01G204400 chr6D 86.777 121 12 2 3961 4077 221219670 221219550 1.330000e-26 132.0
55 TraesCS1B01G204400 chr6D 80.800 125 17 5 128 249 439511928 439512048 2.250000e-14 91.6
56 TraesCS1B01G204400 chr5B 85.950 121 10 2 3963 4076 312761818 312761938 7.990000e-24 122.0
57 TraesCS1B01G204400 chr5B 82.051 117 15 6 137 248 476925103 476924988 1.740000e-15 95.3
58 TraesCS1B01G204400 chr2A 77.273 242 33 10 139 358 360764299 360764058 7.990000e-24 122.0
59 TraesCS1B01G204400 chr4A 81.507 146 23 4 144 285 37019320 37019465 3.720000e-22 117.0
60 TraesCS1B01G204400 chr5A 85.185 108 12 4 137 243 495832396 495832500 2.240000e-19 108.0
61 TraesCS1B01G204400 chr6A 93.333 60 4 0 5064 5123 277889676 277889735 8.110000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G204400 chr1B 368539349 368545221 5872 False 2516.700000 5662 98.148000 1 5873 4 chr1B.!!$F1 5872
1 TraesCS1B01G204400 chr1A 313748001 313752660 4659 True 1217.800000 3650 92.469400 1 5873 5 chr1A.!!$R2 5872
2 TraesCS1B01G204400 chr1D 233893110 233898061 4951 False 1074.333333 3160 91.352333 1 5873 6 chr1D.!!$F3 5872

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
482 496 1.308047 TGGCAATACATCATCCGCAC 58.692 50.0 0.0 0.0 0.00 5.34 F
1149 1243 0.323451 CCAAACTCCCCTTGCTACCC 60.323 60.0 0.0 0.0 0.00 3.69 F
1198 1292 0.323451 AAATTTCCCGCTGACCCCTC 60.323 55.0 0.0 0.0 0.00 4.30 F
2297 2411 1.053835 TGCACAGTCCCTTGAGGTGA 61.054 55.0 0.0 0.0 36.75 4.02 F
2608 2723 2.161410 CACACATGGGTATTGTTGTCCG 59.839 50.0 0.0 0.0 0.00 4.79 F
4077 4197 0.178970 TATGGGACGGAGGGAGTAGC 60.179 60.0 0.0 0.0 0.00 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1425 1520 0.673644 CACGCAGTACTTCTTGGGGG 60.674 60.000 0.00 0.00 41.61 5.40 R
2985 3101 1.205417 CTGCTTTTAGGGTGCCAATGG 59.795 52.381 0.00 0.00 0.00 3.16 R
3019 3135 2.834549 TCATGAGGACAGAACTCTTCCC 59.165 50.000 0.00 0.00 35.98 3.97 R
4062 4182 0.175989 CAAAGCTACTCCCTCCGTCC 59.824 60.000 0.00 0.00 0.00 4.79 R
4227 4354 0.867753 CAGCAGTCCGATCGTGCTAC 60.868 60.000 25.47 13.05 45.82 3.58 R
5065 5208 1.134491 CGGATGGAGGAAGTACCAACC 60.134 57.143 0.00 0.00 42.93 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 3.561143 TGACAAAAGTAGGTGGTGCATT 58.439 40.909 0.00 0.00 0.00 3.56
66 67 5.105146 ACAAAAGTAGGTGGTGCATTTTTCA 60.105 36.000 0.00 0.00 0.00 2.69
175 186 1.473080 GGCACAAACACATGGCAACTT 60.473 47.619 0.00 0.00 40.91 2.66
180 191 4.571580 CACAAACACATGGCAACTTTGAAT 59.428 37.500 13.29 0.00 32.71 2.57
235 247 5.105797 TGGCAACTTTAGTTATCAAGCATGG 60.106 40.000 0.00 0.00 36.32 3.66
302 314 3.483808 TTTCCTTTTTGGATGGCAACC 57.516 42.857 6.88 6.88 45.68 3.77
323 335 3.435671 CCTTAGTTGTAGAAAACGCCAGG 59.564 47.826 0.00 0.00 35.13 4.45
328 340 2.585341 TAGAAAACGCCAGGGCCGA 61.585 57.895 4.42 0.00 37.98 5.54
336 348 2.282462 CCAGGGCCGAAGTGCTTT 60.282 61.111 0.00 0.00 0.00 3.51
343 355 1.959085 CCGAAGTGCTTTGTGCCAT 59.041 52.632 0.00 0.00 42.00 4.40
479 493 1.881324 TGCATGGCAATACATCATCCG 59.119 47.619 0.00 0.00 34.76 4.18
480 494 1.401931 GCATGGCAATACATCATCCGC 60.402 52.381 0.00 0.00 0.00 5.54
481 495 1.881324 CATGGCAATACATCATCCGCA 59.119 47.619 0.00 0.00 0.00 5.69
482 496 1.308047 TGGCAATACATCATCCGCAC 58.692 50.000 0.00 0.00 0.00 5.34
487 501 3.547468 GCAATACATCATCCGCACAAAAC 59.453 43.478 0.00 0.00 0.00 2.43
488 502 3.673746 ATACATCATCCGCACAAAACG 57.326 42.857 0.00 0.00 0.00 3.60
500 585 3.564511 GCACAAAACGTATCAGCAATGT 58.435 40.909 0.00 0.00 0.00 2.71
531 616 4.887071 ACAATTAGTGCAAGTGAAAGACCA 59.113 37.500 0.00 0.00 35.76 4.02
537 622 2.167487 TGCAAGTGAAAGACCAAAACCC 59.833 45.455 0.00 0.00 0.00 4.11
576 661 9.974750 GCTAATAAGTTCCGAATTATAAGATGC 57.025 33.333 0.00 0.00 0.00 3.91
583 668 7.233757 AGTTCCGAATTATAAGATGCTCTACCT 59.766 37.037 0.00 0.00 0.00 3.08
644 729 5.771469 TGCATTCGTTCATTCATTTCAGTT 58.229 33.333 0.00 0.00 0.00 3.16
645 730 5.858049 TGCATTCGTTCATTCATTTCAGTTC 59.142 36.000 0.00 0.00 0.00 3.01
696 781 5.741388 ACATCTCATAATTTGAAGCGGAC 57.259 39.130 0.00 0.00 32.78 4.79
710 795 1.414919 AGCGGACGGAATAATAAGGCA 59.585 47.619 0.00 0.00 0.00 4.75
739 824 8.349983 GCTTGGAATGGATGTAATTTAATACGT 58.650 33.333 0.00 0.00 0.00 3.57
744 829 9.646336 GAATGGATGTAATTTAATACGTGTGTC 57.354 33.333 0.00 0.00 0.00 3.67
745 830 8.958119 ATGGATGTAATTTAATACGTGTGTCT 57.042 30.769 0.00 0.00 0.00 3.41
746 831 8.780846 TGGATGTAATTTAATACGTGTGTCTT 57.219 30.769 0.00 0.00 0.00 3.01
747 832 9.221933 TGGATGTAATTTAATACGTGTGTCTTT 57.778 29.630 0.00 0.00 0.00 2.52
756 841 6.695292 AATACGTGTGTCTTTTACTTACGG 57.305 37.500 0.00 0.00 40.22 4.02
757 842 3.383761 ACGTGTGTCTTTTACTTACGGG 58.616 45.455 0.00 0.00 40.22 5.28
758 843 3.181476 ACGTGTGTCTTTTACTTACGGGT 60.181 43.478 0.00 0.00 40.22 5.28
809 895 1.728425 GAAACTAAAACGACGGCGGAT 59.272 47.619 18.49 0.00 43.17 4.18
847 933 7.141100 ACAAGTGTATTTAGAATGGAAACGG 57.859 36.000 0.00 0.00 0.00 4.44
974 1068 1.332195 ACCCAAAGAGGCAAAGAAGC 58.668 50.000 0.00 0.00 35.39 3.86
1018 1112 1.971695 GTGCTCCCTTTTCCCACCG 60.972 63.158 0.00 0.00 0.00 4.94
1134 1228 4.760047 GCTCCTCTCGCCGCCAAA 62.760 66.667 0.00 0.00 0.00 3.28
1149 1243 0.323451 CCAAACTCCCCTTGCTACCC 60.323 60.000 0.00 0.00 0.00 3.69
1181 1275 5.278660 GCTTCAGATTGCTTTTCTCCTGAAA 60.279 40.000 0.00 0.00 39.29 2.69
1198 1292 0.323451 AAATTTCCCGCTGACCCCTC 60.323 55.000 0.00 0.00 0.00 4.30
1200 1294 1.915078 ATTTCCCGCTGACCCCTCTG 61.915 60.000 0.00 0.00 0.00 3.35
1425 1520 3.064134 GGGTAGTAGGTTAAGACGACGAC 59.936 52.174 0.00 0.00 0.00 4.34
1529 1624 1.557371 TGTTGTGTTCACTGGACCAGA 59.443 47.619 28.56 3.61 35.18 3.86
1530 1625 1.940613 GTTGTGTTCACTGGACCAGAC 59.059 52.381 28.56 15.93 35.18 3.51
1743 1851 6.055588 CCCTCAAATGGTAATGGTAGTACTG 58.944 44.000 5.39 0.00 0.00 2.74
1945 2055 1.729276 TGCCTATGCAGCGAATTGC 59.271 52.632 0.00 0.00 44.23 3.56
1964 2074 2.031768 GATCATGGGAGGAGCGCC 59.968 66.667 2.29 0.00 0.00 6.53
2143 2255 8.091449 AGTTGTAAGGACTGAAGAATTACTGAG 58.909 37.037 0.00 0.00 0.00 3.35
2239 2353 3.186909 GTTGGTTGTTTGCCTTTCTGAC 58.813 45.455 0.00 0.00 0.00 3.51
2297 2411 1.053835 TGCACAGTCCCTTGAGGTGA 61.054 55.000 0.00 0.00 36.75 4.02
2441 2555 2.580322 TGATCCTTGCCAATTCTACCCA 59.420 45.455 0.00 0.00 0.00 4.51
2442 2556 3.205056 TGATCCTTGCCAATTCTACCCAT 59.795 43.478 0.00 0.00 0.00 4.00
2443 2557 3.756082 TCCTTGCCAATTCTACCCATT 57.244 42.857 0.00 0.00 0.00 3.16
2444 2558 3.631250 TCCTTGCCAATTCTACCCATTC 58.369 45.455 0.00 0.00 0.00 2.67
2445 2559 3.011144 TCCTTGCCAATTCTACCCATTCA 59.989 43.478 0.00 0.00 0.00 2.57
2446 2560 3.962718 CCTTGCCAATTCTACCCATTCAT 59.037 43.478 0.00 0.00 0.00 2.57
2608 2723 2.161410 CACACATGGGTATTGTTGTCCG 59.839 50.000 0.00 0.00 0.00 4.79
2779 2895 7.307694 TCATGTTACTTGTTCAATGAGAATGC 58.692 34.615 0.00 0.00 38.76 3.56
2814 2930 5.982516 TGGATTTCACTTGTAATTGTTGTGC 59.017 36.000 0.00 0.00 0.00 4.57
2938 3054 6.413783 TCACAGTGAGTTGGTGAGTATTAA 57.586 37.500 0.00 0.00 36.69 1.40
3019 3135 9.614792 ACCCTAAAAGCAGATGTACTTAATAAG 57.385 33.333 0.00 0.00 0.00 1.73
3027 3143 7.345914 AGCAGATGTACTTAATAAGGGAAGAGT 59.654 37.037 4.92 0.00 0.00 3.24
3034 3150 6.948589 ACTTAATAAGGGAAGAGTTCTGTCC 58.051 40.000 4.92 0.00 0.00 4.02
3041 3157 3.261897 GGGAAGAGTTCTGTCCTCATGAA 59.738 47.826 0.00 0.00 0.00 2.57
3043 3159 5.495640 GGAAGAGTTCTGTCCTCATGAATT 58.504 41.667 0.00 0.00 0.00 2.17
3045 3161 7.106239 GGAAGAGTTCTGTCCTCATGAATTAA 58.894 38.462 0.00 0.00 0.00 1.40
3046 3162 7.772757 GGAAGAGTTCTGTCCTCATGAATTAAT 59.227 37.037 0.00 0.00 0.00 1.40
3047 3163 9.823647 GAAGAGTTCTGTCCTCATGAATTAATA 57.176 33.333 0.00 0.00 0.00 0.98
3664 3782 5.182487 TGTGTGGCAGTATACACCATTAAG 58.818 41.667 17.67 0.00 44.94 1.85
3696 3814 4.203950 TGTTCAACATTGCGTGTACTTC 57.796 40.909 0.00 0.00 41.14 3.01
3839 3959 6.649557 GTGTGAAGTAGGCACTTATACAGTTT 59.350 38.462 13.94 0.00 45.18 2.66
3864 3984 4.397417 GCAGCAGTAGATGGTTGAAGAATT 59.603 41.667 0.00 0.00 37.60 2.17
3953 4073 2.432510 GCACTCCCTGCTGTTAGTAGAT 59.567 50.000 0.00 0.00 43.33 1.98
3954 4074 3.637229 GCACTCCCTGCTGTTAGTAGATA 59.363 47.826 0.00 0.00 43.33 1.98
3955 4075 4.099573 GCACTCCCTGCTGTTAGTAGATAA 59.900 45.833 0.00 0.00 43.33 1.75
3956 4076 5.395324 GCACTCCCTGCTGTTAGTAGATAAA 60.395 44.000 0.00 0.00 43.33 1.40
3957 4077 6.640518 CACTCCCTGCTGTTAGTAGATAAAA 58.359 40.000 0.00 0.00 28.61 1.52
3958 4078 7.103641 CACTCCCTGCTGTTAGTAGATAAAAA 58.896 38.462 0.00 0.00 28.61 1.94
3983 4103 9.847224 AAAAATACTCTGTCCGTTCCATAATAT 57.153 29.630 0.00 0.00 0.00 1.28
3987 4107 7.834881 ACTCTGTCCGTTCCATAATATAAGA 57.165 36.000 0.00 0.00 0.00 2.10
3988 4108 7.887381 ACTCTGTCCGTTCCATAATATAAGAG 58.113 38.462 0.00 0.00 34.00 2.85
3989 4109 7.506261 ACTCTGTCCGTTCCATAATATAAGAGT 59.494 37.037 0.00 0.00 35.78 3.24
3990 4110 7.658261 TCTGTCCGTTCCATAATATAAGAGTG 58.342 38.462 0.00 0.00 0.00 3.51
3991 4111 7.287005 TCTGTCCGTTCCATAATATAAGAGTGT 59.713 37.037 0.00 0.00 0.00 3.55
3992 4112 7.788026 TGTCCGTTCCATAATATAAGAGTGTT 58.212 34.615 0.00 0.00 0.00 3.32
3993 4113 8.262227 TGTCCGTTCCATAATATAAGAGTGTTT 58.738 33.333 0.00 0.00 0.00 2.83
3994 4114 9.106070 GTCCGTTCCATAATATAAGAGTGTTTT 57.894 33.333 0.00 0.00 0.00 2.43
3995 4115 9.104965 TCCGTTCCATAATATAAGAGTGTTTTG 57.895 33.333 0.00 0.00 0.00 2.44
3996 4116 9.104965 CCGTTCCATAATATAAGAGTGTTTTGA 57.895 33.333 0.00 0.00 0.00 2.69
3997 4117 9.916397 CGTTCCATAATATAAGAGTGTTTTGAC 57.084 33.333 0.00 0.00 0.00 3.18
4021 4141 6.787085 ACTACAGTAGTGTCAAAAATGCTC 57.213 37.500 12.75 0.00 37.69 4.26
4022 4142 6.525629 ACTACAGTAGTGTCAAAAATGCTCT 58.474 36.000 12.75 0.00 37.69 4.09
4023 4143 6.992715 ACTACAGTAGTGTCAAAAATGCTCTT 59.007 34.615 12.75 0.00 37.69 2.85
4024 4144 8.148351 ACTACAGTAGTGTCAAAAATGCTCTTA 58.852 33.333 12.75 0.00 37.69 2.10
4025 4145 7.986085 ACAGTAGTGTCAAAAATGCTCTTAT 57.014 32.000 0.00 0.00 26.76 1.73
4027 4147 9.672673 ACAGTAGTGTCAAAAATGCTCTTATAT 57.327 29.630 0.00 0.00 26.76 0.86
4033 4153 9.683069 GTGTCAAAAATGCTCTTATATTATGGG 57.317 33.333 0.00 0.00 0.00 4.00
4034 4154 8.859090 TGTCAAAAATGCTCTTATATTATGGGG 58.141 33.333 0.00 0.00 0.00 4.96
4035 4155 8.860088 GTCAAAAATGCTCTTATATTATGGGGT 58.140 33.333 0.00 0.00 0.00 4.95
4039 4159 9.520515 AAAATGCTCTTATATTATGGGGTAGTG 57.479 33.333 0.00 0.00 0.00 2.74
4040 4160 7.814693 ATGCTCTTATATTATGGGGTAGTGT 57.185 36.000 0.00 0.00 0.00 3.55
4041 4161 7.241042 TGCTCTTATATTATGGGGTAGTGTC 57.759 40.000 0.00 0.00 0.00 3.67
4042 4162 6.785466 TGCTCTTATATTATGGGGTAGTGTCA 59.215 38.462 0.00 0.00 0.00 3.58
4043 4163 7.291416 TGCTCTTATATTATGGGGTAGTGTCAA 59.709 37.037 0.00 0.00 0.00 3.18
4044 4164 8.154856 GCTCTTATATTATGGGGTAGTGTCAAA 58.845 37.037 0.00 0.00 0.00 2.69
4049 4169 5.652994 TTATGGGGTAGTGTCAAAAATGC 57.347 39.130 0.00 0.00 0.00 3.56
4050 4170 3.237268 TGGGGTAGTGTCAAAAATGCT 57.763 42.857 0.00 0.00 0.00 3.79
4051 4171 3.153919 TGGGGTAGTGTCAAAAATGCTC 58.846 45.455 0.00 0.00 0.00 4.26
4052 4172 3.181434 TGGGGTAGTGTCAAAAATGCTCT 60.181 43.478 0.00 0.00 0.00 4.09
4053 4173 3.826729 GGGGTAGTGTCAAAAATGCTCTT 59.173 43.478 0.00 0.00 0.00 2.85
4054 4174 5.007682 GGGGTAGTGTCAAAAATGCTCTTA 58.992 41.667 0.00 0.00 0.00 2.10
4055 4175 5.652452 GGGGTAGTGTCAAAAATGCTCTTAT 59.348 40.000 0.00 0.00 0.00 1.73
4056 4176 6.826741 GGGGTAGTGTCAAAAATGCTCTTATA 59.173 38.462 0.00 0.00 0.00 0.98
4057 4177 7.502561 GGGGTAGTGTCAAAAATGCTCTTATAT 59.497 37.037 0.00 0.00 0.00 0.86
4058 4178 8.903820 GGGTAGTGTCAAAAATGCTCTTATATT 58.096 33.333 0.00 0.00 0.00 1.28
4063 4183 9.683069 GTGTCAAAAATGCTCTTATATTATGGG 57.317 33.333 0.00 0.00 0.00 4.00
4064 4184 9.639563 TGTCAAAAATGCTCTTATATTATGGGA 57.360 29.630 0.00 0.00 0.00 4.37
4065 4185 9.899226 GTCAAAAATGCTCTTATATTATGGGAC 57.101 33.333 0.00 0.00 0.00 4.46
4066 4186 8.783093 TCAAAAATGCTCTTATATTATGGGACG 58.217 33.333 0.00 0.00 0.00 4.79
4067 4187 7.687941 AAAATGCTCTTATATTATGGGACGG 57.312 36.000 0.00 0.00 0.00 4.79
4068 4188 6.620877 AATGCTCTTATATTATGGGACGGA 57.379 37.500 0.00 0.00 0.00 4.69
4069 4189 5.661056 TGCTCTTATATTATGGGACGGAG 57.339 43.478 0.00 0.00 0.00 4.63
4070 4190 4.466370 TGCTCTTATATTATGGGACGGAGG 59.534 45.833 0.00 0.00 0.00 4.30
4071 4191 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
4072 4192 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
4073 4193 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
4074 4194 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
4075 4195 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
4076 4196 2.376695 TTATGGGACGGAGGGAGTAG 57.623 55.000 0.00 0.00 0.00 2.57
4077 4197 0.178970 TATGGGACGGAGGGAGTAGC 60.179 60.000 0.00 0.00 0.00 3.58
4078 4198 1.950748 ATGGGACGGAGGGAGTAGCT 61.951 60.000 0.00 0.00 0.00 3.32
4079 4199 1.381463 GGGACGGAGGGAGTAGCTT 60.381 63.158 0.00 0.00 0.00 3.74
4080 4200 0.976590 GGGACGGAGGGAGTAGCTTT 60.977 60.000 0.00 0.00 0.00 3.51
4127 4247 7.992033 CCTCTTGATGTTCCAAGATAAAGAGAT 59.008 37.037 18.96 0.00 44.38 2.75
4159 4286 6.827586 TCTGTCTCTTCTACTTCTTCCTTC 57.172 41.667 0.00 0.00 0.00 3.46
4160 4287 6.548321 TCTGTCTCTTCTACTTCTTCCTTCT 58.452 40.000 0.00 0.00 0.00 2.85
4165 4292 8.311109 GTCTCTTCTACTTCTTCCTTCTCAATT 58.689 37.037 0.00 0.00 0.00 2.32
4166 4293 8.527810 TCTCTTCTACTTCTTCCTTCTCAATTC 58.472 37.037 0.00 0.00 0.00 2.17
4182 4309 6.782986 TCTCAATTCAGAAATTCCCTCAAGA 58.217 36.000 0.00 0.00 32.69 3.02
4185 4312 6.883217 TCAATTCAGAAATTCCCTCAAGAGAG 59.117 38.462 0.00 0.00 35.96 3.20
4190 4317 1.506025 ATTCCCTCAAGAGAGCTCCC 58.494 55.000 10.93 0.00 40.68 4.30
4194 4321 1.692121 CCCTCAAGAGAGCTCCCTGAT 60.692 57.143 10.93 0.00 40.68 2.90
4206 4333 4.723309 AGCTCCCTGATTATGATCAAACC 58.277 43.478 0.00 0.00 41.55 3.27
4211 4338 3.003689 CCTGATTATGATCAAACCGGTGC 59.996 47.826 8.52 0.00 41.55 5.01
4219 4346 4.269183 TGATCAAACCGGTGCATTAAGAT 58.731 39.130 8.52 4.06 0.00 2.40
4223 4350 6.189677 TCAAACCGGTGCATTAAGATTTAG 57.810 37.500 8.52 0.00 0.00 1.85
4231 4358 5.198274 GTGCATTAAGATTTAGCACGTAGC 58.802 41.667 0.00 0.00 44.84 3.58
4238 4365 1.541475 TTTAGCACGTAGCACGATCG 58.459 50.000 14.88 14.88 46.05 3.69
4248 4375 2.125952 CACGATCGGACTGCTGCA 60.126 61.111 20.98 0.88 0.00 4.41
4251 4378 1.953138 CGATCGGACTGCTGCATCC 60.953 63.158 7.38 16.35 0.00 3.51
4277 4406 7.967854 CGGAATGTATTTTAGTTGATTTCTGCA 59.032 33.333 0.00 0.00 0.00 4.41
4303 4432 8.438676 AGCCTAAACTAAATACTGTGCTAATG 57.561 34.615 0.00 0.00 0.00 1.90
4339 4468 7.883229 AAAAATTCACGATTTCCACCATAAC 57.117 32.000 0.00 0.00 36.96 1.89
4356 4485 9.703892 CCACCATAACTGATTTTATTTGAACAA 57.296 29.630 0.00 0.00 0.00 2.83
4376 4505 8.721478 TGAACAATTAAGATGCAAAGTCTAGAC 58.279 33.333 15.41 15.41 0.00 2.59
4379 4508 6.917217 ATTAAGATGCAAAGTCTAGACTGC 57.083 37.500 25.83 24.46 41.58 4.40
4386 4515 4.580167 TGCAAAGTCTAGACTGCAAAATGT 59.420 37.500 28.11 9.85 41.58 2.71
4390 4519 7.520614 GCAAAGTCTAGACTGCAAAATGTAGTT 60.521 37.037 25.83 8.97 43.31 2.24
4392 4521 8.764524 AAGTCTAGACTGCAAAATGTAGTTAG 57.235 34.615 25.83 6.89 43.31 2.34
4416 4545 4.305539 TCCTTGCTGGAAGAATTGATCA 57.694 40.909 10.73 0.00 42.94 2.92
4417 4546 4.863548 TCCTTGCTGGAAGAATTGATCAT 58.136 39.130 10.73 0.00 42.94 2.45
4419 4548 4.888239 CCTTGCTGGAAGAATTGATCATCT 59.112 41.667 10.73 0.00 38.35 2.90
4452 4581 2.162681 CCACAACCACCTTGATCCTTC 58.837 52.381 0.00 0.00 33.59 3.46
4612 4741 4.670765 AGAAATGAGGGCTTCAGTTTCAT 58.329 39.130 23.06 10.31 43.58 2.57
4615 4744 3.228188 TGAGGGCTTCAGTTTCATGTT 57.772 42.857 0.00 0.00 0.00 2.71
4750 4879 4.276926 ACTTCAGATCAAACCAAGCTTGAC 59.723 41.667 28.05 9.32 35.70 3.18
4860 5003 7.716799 AACTAATTGCCCTTGATTGTATGAA 57.283 32.000 0.00 0.00 0.00 2.57
4932 5075 9.950680 CCAAATCTAAATATACGTTTGCTTGAT 57.049 29.630 0.00 0.00 0.00 2.57
4944 5087 7.357951 ACGTTTGCTTGATTTTTCTTTTTGA 57.642 28.000 0.00 0.00 0.00 2.69
4945 5088 7.801752 ACGTTTGCTTGATTTTTCTTTTTGAA 58.198 26.923 0.00 0.00 0.00 2.69
4946 5089 8.286097 ACGTTTGCTTGATTTTTCTTTTTGAAA 58.714 25.926 0.00 0.00 42.33 2.69
4947 5090 9.276397 CGTTTGCTTGATTTTTCTTTTTGAAAT 57.724 25.926 0.00 0.00 43.34 2.17
5023 5166 9.847224 AATTTACAATATCGTTCATAGGTTCCT 57.153 29.630 0.00 0.00 0.00 3.36
5024 5167 8.882415 TTTACAATATCGTTCATAGGTTCCTC 57.118 34.615 0.00 0.00 0.00 3.71
5025 5168 6.479972 ACAATATCGTTCATAGGTTCCTCA 57.520 37.500 0.00 0.00 0.00 3.86
5026 5169 6.884832 ACAATATCGTTCATAGGTTCCTCAA 58.115 36.000 0.00 0.00 0.00 3.02
5027 5170 7.335627 ACAATATCGTTCATAGGTTCCTCAAA 58.664 34.615 0.00 0.00 0.00 2.69
5028 5171 7.280205 ACAATATCGTTCATAGGTTCCTCAAAC 59.720 37.037 0.00 0.00 37.12 2.93
5037 5180 2.658807 GTTCCTCAAACCAGTCCCTT 57.341 50.000 0.00 0.00 31.20 3.95
5038 5181 2.230660 GTTCCTCAAACCAGTCCCTTG 58.769 52.381 0.00 0.00 31.20 3.61
5039 5182 1.518367 TCCTCAAACCAGTCCCTTGT 58.482 50.000 0.00 0.00 0.00 3.16
5040 5183 1.420138 TCCTCAAACCAGTCCCTTGTC 59.580 52.381 0.00 0.00 0.00 3.18
5041 5184 1.421646 CCTCAAACCAGTCCCTTGTCT 59.578 52.381 0.00 0.00 0.00 3.41
5042 5185 2.551071 CCTCAAACCAGTCCCTTGTCTC 60.551 54.545 0.00 0.00 0.00 3.36
5043 5186 2.104792 CTCAAACCAGTCCCTTGTCTCA 59.895 50.000 0.00 0.00 0.00 3.27
5044 5187 2.104792 TCAAACCAGTCCCTTGTCTCAG 59.895 50.000 0.00 0.00 0.00 3.35
5045 5188 2.103153 AACCAGTCCCTTGTCTCAGA 57.897 50.000 0.00 0.00 0.00 3.27
5046 5189 2.103153 ACCAGTCCCTTGTCTCAGAA 57.897 50.000 0.00 0.00 0.00 3.02
5047 5190 2.408565 ACCAGTCCCTTGTCTCAGAAA 58.591 47.619 0.00 0.00 0.00 2.52
5048 5191 2.777692 ACCAGTCCCTTGTCTCAGAAAA 59.222 45.455 0.00 0.00 0.00 2.29
5049 5192 3.395941 ACCAGTCCCTTGTCTCAGAAAAT 59.604 43.478 0.00 0.00 0.00 1.82
5050 5193 4.141158 ACCAGTCCCTTGTCTCAGAAAATT 60.141 41.667 0.00 0.00 0.00 1.82
5051 5194 4.829492 CCAGTCCCTTGTCTCAGAAAATTT 59.171 41.667 0.00 0.00 0.00 1.82
5052 5195 5.278660 CCAGTCCCTTGTCTCAGAAAATTTG 60.279 44.000 0.00 0.00 0.00 2.32
5053 5196 4.829492 AGTCCCTTGTCTCAGAAAATTTGG 59.171 41.667 0.00 0.00 0.00 3.28
5054 5197 3.573967 TCCCTTGTCTCAGAAAATTTGGC 59.426 43.478 0.00 0.00 0.00 4.52
5055 5198 3.575687 CCCTTGTCTCAGAAAATTTGGCT 59.424 43.478 0.00 0.00 0.00 4.75
5056 5199 4.766891 CCCTTGTCTCAGAAAATTTGGCTA 59.233 41.667 0.00 0.00 0.00 3.93
5057 5200 5.335976 CCCTTGTCTCAGAAAATTTGGCTAC 60.336 44.000 0.00 0.00 0.00 3.58
5058 5201 5.474876 CCTTGTCTCAGAAAATTTGGCTACT 59.525 40.000 0.00 0.00 0.00 2.57
5059 5202 6.348868 CCTTGTCTCAGAAAATTTGGCTACTC 60.349 42.308 0.00 0.00 0.00 2.59
5060 5203 4.690748 TGTCTCAGAAAATTTGGCTACTCG 59.309 41.667 0.00 0.00 0.00 4.18
5061 5204 4.929808 GTCTCAGAAAATTTGGCTACTCGA 59.070 41.667 0.00 0.00 0.00 4.04
5062 5205 5.408604 GTCTCAGAAAATTTGGCTACTCGAA 59.591 40.000 0.00 0.00 0.00 3.71
5063 5206 6.092807 GTCTCAGAAAATTTGGCTACTCGAAT 59.907 38.462 0.00 0.00 0.00 3.34
5064 5207 6.655003 TCTCAGAAAATTTGGCTACTCGAATT 59.345 34.615 0.00 0.00 33.47 2.17
5065 5208 6.611381 TCAGAAAATTTGGCTACTCGAATTG 58.389 36.000 0.00 0.00 32.68 2.32
5066 5209 5.801947 CAGAAAATTTGGCTACTCGAATTGG 59.198 40.000 0.00 0.00 32.68 3.16
5067 5210 5.476945 AGAAAATTTGGCTACTCGAATTGGT 59.523 36.000 0.00 0.00 32.68 3.67
5068 5211 5.722021 AAATTTGGCTACTCGAATTGGTT 57.278 34.783 0.00 0.00 32.68 3.67
5069 5212 4.701956 ATTTGGCTACTCGAATTGGTTG 57.298 40.909 0.00 0.00 0.00 3.77
5070 5213 2.107950 TGGCTACTCGAATTGGTTGG 57.892 50.000 0.00 0.00 0.00 3.77
5071 5214 1.349688 TGGCTACTCGAATTGGTTGGT 59.650 47.619 0.00 0.00 0.00 3.67
5072 5215 2.568062 TGGCTACTCGAATTGGTTGGTA 59.432 45.455 0.00 0.00 0.00 3.25
5073 5216 2.934553 GGCTACTCGAATTGGTTGGTAC 59.065 50.000 0.00 0.00 0.00 3.34
5074 5217 3.369157 GGCTACTCGAATTGGTTGGTACT 60.369 47.826 0.00 0.00 0.00 2.73
5075 5218 4.251268 GCTACTCGAATTGGTTGGTACTT 58.749 43.478 0.00 0.00 0.00 2.24
5076 5219 4.329256 GCTACTCGAATTGGTTGGTACTTC 59.671 45.833 0.00 0.00 0.00 3.01
5077 5220 3.671716 ACTCGAATTGGTTGGTACTTCC 58.328 45.455 0.00 0.00 0.00 3.46
5078 5221 3.326880 ACTCGAATTGGTTGGTACTTCCT 59.673 43.478 0.00 0.00 37.07 3.36
5079 5222 3.933332 CTCGAATTGGTTGGTACTTCCTC 59.067 47.826 0.00 0.00 37.07 3.71
5080 5223 3.007635 CGAATTGGTTGGTACTTCCTCC 58.992 50.000 0.00 0.00 37.07 4.30
5081 5224 3.558321 CGAATTGGTTGGTACTTCCTCCA 60.558 47.826 0.00 0.00 38.38 3.86
5082 5225 4.600062 GAATTGGTTGGTACTTCCTCCAT 58.400 43.478 0.00 0.00 39.22 3.41
5083 5226 3.713826 TTGGTTGGTACTTCCTCCATC 57.286 47.619 0.00 0.00 39.22 3.51
5084 5227 1.913419 TGGTTGGTACTTCCTCCATCC 59.087 52.381 0.00 0.00 41.43 3.51
5085 5228 1.134491 GGTTGGTACTTCCTCCATCCG 60.134 57.143 0.00 0.00 35.00 4.18
5086 5229 1.829222 GTTGGTACTTCCTCCATCCGA 59.171 52.381 0.00 0.00 37.07 4.55
5087 5230 2.235402 GTTGGTACTTCCTCCATCCGAA 59.765 50.000 0.00 0.00 37.07 4.30
5088 5231 2.542550 TGGTACTTCCTCCATCCGAAA 58.457 47.619 0.00 0.00 37.07 3.46
5089 5232 2.907696 TGGTACTTCCTCCATCCGAAAA 59.092 45.455 0.00 0.00 37.07 2.29
5090 5233 3.328343 TGGTACTTCCTCCATCCGAAAAA 59.672 43.478 0.00 0.00 37.07 1.94
5110 5253 5.473066 AAAACTTGTCCCTCAAATGGATG 57.527 39.130 0.00 0.00 35.48 3.51
5111 5254 3.814504 ACTTGTCCCTCAAATGGATGT 57.185 42.857 0.00 0.00 35.48 3.06
5112 5255 4.927267 ACTTGTCCCTCAAATGGATGTA 57.073 40.909 0.00 0.00 35.48 2.29
5113 5256 5.456921 ACTTGTCCCTCAAATGGATGTAT 57.543 39.130 0.00 0.00 35.48 2.29
5114 5257 5.440610 ACTTGTCCCTCAAATGGATGTATC 58.559 41.667 0.00 0.00 35.48 2.24
5115 5258 5.192522 ACTTGTCCCTCAAATGGATGTATCT 59.807 40.000 0.00 0.00 35.48 1.98
5116 5259 6.386927 ACTTGTCCCTCAAATGGATGTATCTA 59.613 38.462 0.00 0.00 35.48 1.98
5117 5260 6.425210 TGTCCCTCAAATGGATGTATCTAG 57.575 41.667 0.00 0.00 33.65 2.43
5118 5261 5.221722 TGTCCCTCAAATGGATGTATCTAGC 60.222 44.000 0.00 0.00 33.65 3.42
5119 5262 4.907269 TCCCTCAAATGGATGTATCTAGCA 59.093 41.667 0.00 0.00 0.00 3.49
5120 5263 4.999950 CCCTCAAATGGATGTATCTAGCAC 59.000 45.833 0.00 0.00 0.00 4.40
5121 5264 4.999950 CCTCAAATGGATGTATCTAGCACC 59.000 45.833 0.00 0.00 0.00 5.01
5122 5265 5.455183 CCTCAAATGGATGTATCTAGCACCA 60.455 44.000 0.00 0.00 0.00 4.17
5123 5266 5.368145 TCAAATGGATGTATCTAGCACCAC 58.632 41.667 0.00 0.00 0.00 4.16
5124 5267 5.104569 TCAAATGGATGTATCTAGCACCACA 60.105 40.000 0.00 0.00 0.00 4.17
5125 5268 5.573380 AATGGATGTATCTAGCACCACAT 57.427 39.130 0.00 0.00 34.41 3.21
5126 5269 5.573380 ATGGATGTATCTAGCACCACATT 57.427 39.130 0.00 0.00 31.94 2.71
5127 5270 5.372343 TGGATGTATCTAGCACCACATTT 57.628 39.130 0.00 0.00 31.94 2.32
5128 5271 5.125356 TGGATGTATCTAGCACCACATTTG 58.875 41.667 0.00 0.00 31.94 2.32
5129 5272 5.104569 TGGATGTATCTAGCACCACATTTGA 60.105 40.000 0.00 0.00 31.94 2.69
5130 5273 5.468072 GGATGTATCTAGCACCACATTTGAG 59.532 44.000 0.00 0.00 31.94 3.02
5131 5274 5.675684 TGTATCTAGCACCACATTTGAGA 57.324 39.130 0.00 0.00 0.00 3.27
5132 5275 6.048732 TGTATCTAGCACCACATTTGAGAA 57.951 37.500 0.00 0.00 0.00 2.87
5133 5276 6.472016 TGTATCTAGCACCACATTTGAGAAA 58.528 36.000 0.00 0.00 0.00 2.52
5134 5277 6.939730 TGTATCTAGCACCACATTTGAGAAAA 59.060 34.615 0.00 0.00 0.00 2.29
5135 5278 6.899393 ATCTAGCACCACATTTGAGAAAAA 57.101 33.333 0.00 0.00 0.00 1.94
5160 5303 7.233389 ACAGAGATAGTAGCAGACTTTGAAA 57.767 36.000 0.00 0.00 39.81 2.69
5210 5353 2.200899 GCAACACATTGGAGCGTTTTT 58.799 42.857 0.00 0.00 36.23 1.94
5253 5396 3.133003 CCCCAAACAATTGTGTACACCAA 59.867 43.478 22.91 16.45 36.80 3.67
5296 5439 1.565156 GAACAGACGGCGTGATTGCA 61.565 55.000 21.19 0.00 36.28 4.08
5307 5450 1.026182 GTGATTGCAGGATCGGCACA 61.026 55.000 9.89 4.17 41.75 4.57
5325 5468 4.092968 GGCACACTACACTAATACACTTGC 59.907 45.833 0.00 0.00 0.00 4.01
5333 5476 6.545504 ACACTAATACACTTGCTTGTCTTG 57.454 37.500 0.00 0.00 0.00 3.02
5460 5606 5.718130 TGCCTCCTCATTGATCTTTCAAAAT 59.282 36.000 0.00 0.00 44.70 1.82
5503 5649 3.665190 GTCCATCTTCGGTTTTCTGAGT 58.335 45.455 0.00 0.00 36.48 3.41
5512 5658 8.118976 TCTTCGGTTTTCTGAGTAATAGAGAA 57.881 34.615 0.00 0.00 36.48 2.87
5513 5659 8.582437 TCTTCGGTTTTCTGAGTAATAGAGAAA 58.418 33.333 0.00 0.00 36.48 2.52
5586 5737 9.358872 AGAAAAGTTGATTGTCTTCAAAAGAAC 57.641 29.630 0.00 0.00 39.67 3.01
5587 5738 9.358872 GAAAAGTTGATTGTCTTCAAAAGAACT 57.641 29.630 0.00 0.00 39.67 3.01
5591 5742 9.788960 AGTTGATTGTCTTCAAAAGAACTAAAC 57.211 29.630 0.00 0.00 39.67 2.01
5592 5743 9.788960 GTTGATTGTCTTCAAAAGAACTAAACT 57.211 29.630 0.00 0.00 39.67 2.66
5620 5771 3.008330 GTTGACTGTCGCTCCTCTAGTA 58.992 50.000 2.98 0.00 0.00 1.82
5649 5800 8.573035 GTTCAGGATCATAAAACAAACTACCAA 58.427 33.333 0.00 0.00 0.00 3.67
5712 5863 2.167075 GGAGCAGCATTACCAGCAAATT 59.833 45.455 0.00 0.00 0.00 1.82
5720 5871 4.489810 CATTACCAGCAAATTGCCGTAAA 58.510 39.130 23.15 12.03 46.52 2.01
5784 5935 6.662755 ACAACATCTAATTTGCAGGAGGATA 58.337 36.000 0.00 0.00 0.00 2.59
5785 5936 7.118723 ACAACATCTAATTTGCAGGAGGATAA 58.881 34.615 0.00 0.00 0.00 1.75
5786 5937 7.781693 ACAACATCTAATTTGCAGGAGGATAAT 59.218 33.333 0.00 0.00 0.00 1.28
5787 5938 8.636213 CAACATCTAATTTGCAGGAGGATAATT 58.364 33.333 0.00 0.00 0.00 1.40
5788 5939 9.866655 AACATCTAATTTGCAGGAGGATAATTA 57.133 29.630 0.00 0.00 0.00 1.40
5789 5940 9.512588 ACATCTAATTTGCAGGAGGATAATTAG 57.487 33.333 14.51 14.51 38.89 1.73
5790 5941 8.954350 CATCTAATTTGCAGGAGGATAATTAGG 58.046 37.037 18.12 6.09 38.44 2.69
5791 5942 6.942576 TCTAATTTGCAGGAGGATAATTAGGC 59.057 38.462 18.12 0.00 38.44 3.93
5828 5979 5.720371 TGAAACCCAACAGAAACATATGG 57.280 39.130 7.80 0.00 0.00 2.74
5858 6009 7.862648 ACCAAAATACGAAAGAGAGAAGAAAC 58.137 34.615 0.00 0.00 0.00 2.78
5864 6015 9.937175 AATACGAAAGAGAGAAGAAACAAAAAG 57.063 29.630 0.00 0.00 0.00 2.27
5865 6016 7.379098 ACGAAAGAGAGAAGAAACAAAAAGT 57.621 32.000 0.00 0.00 0.00 2.66
5867 6018 8.943002 ACGAAAGAGAGAAGAAACAAAAAGTAA 58.057 29.630 0.00 0.00 0.00 2.24
5868 6019 9.769093 CGAAAGAGAGAAGAAACAAAAAGTAAA 57.231 29.630 0.00 0.00 0.00 2.01
5870 6021 9.556030 AAAGAGAGAAGAAACAAAAAGTAAACG 57.444 29.630 0.00 0.00 0.00 3.60
5872 6023 8.943002 AGAGAGAAGAAACAAAAAGTAAACGAA 58.057 29.630 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 7.118680 CACCACCTACTTTTGTCAAATACGTAT 59.881 37.037 1.14 1.14 0.00 3.06
42 43 5.105146 TGAAAAATGCACCACCTACTTTTGT 60.105 36.000 0.00 0.00 0.00 2.83
66 67 3.265995 TGCATGGCTCTATCATGGATCAT 59.734 43.478 0.00 0.00 41.49 2.45
132 141 2.548057 CACGTGTGGCACTTATCAAGTT 59.452 45.455 19.83 0.00 40.46 2.66
133 142 2.143122 CACGTGTGGCACTTATCAAGT 58.857 47.619 19.83 3.45 44.06 3.16
134 143 2.096268 CACACGTGTGGCACTTATCAAG 60.096 50.000 35.65 9.89 42.10 3.02
135 144 1.870402 CACACGTGTGGCACTTATCAA 59.130 47.619 35.65 0.00 42.10 2.57
193 205 3.124466 TGCCATCATTTCGTCACTAAACG 59.876 43.478 0.00 0.00 43.92 3.60
302 314 3.435671 CCCTGGCGTTTTCTACAACTAAG 59.564 47.826 0.00 0.00 0.00 2.18
323 335 2.050077 GCACAAAGCACTTCGGCC 60.050 61.111 0.00 0.00 44.79 6.13
343 355 5.726397 ACTAAATGATAAGTGCCACACGTA 58.274 37.500 0.00 0.00 39.64 3.57
414 428 7.651027 AGCTGGAATAATATGCTCAACTTTT 57.349 32.000 0.00 0.00 0.00 2.27
479 493 3.564511 ACATTGCTGATACGTTTTGTGC 58.435 40.909 0.00 0.00 0.00 4.57
480 494 8.946935 CAATATACATTGCTGATACGTTTTGTG 58.053 33.333 0.00 0.00 35.44 3.33
523 608 6.434340 AGTGATATCAAGGGTTTTGGTCTTTC 59.566 38.462 7.07 0.00 0.00 2.62
531 616 7.961326 ATTAGCAAGTGATATCAAGGGTTTT 57.039 32.000 7.07 0.00 0.00 2.43
537 622 8.491152 CGGAACTTATTAGCAAGTGATATCAAG 58.509 37.037 7.07 1.91 38.74 3.02
610 695 6.844696 ATGAACGAATGCATAAACGTATCT 57.155 33.333 20.61 10.17 38.00 1.98
613 698 6.410243 TGAATGAACGAATGCATAAACGTA 57.590 33.333 20.61 10.99 38.00 3.57
620 705 5.957798 ACTGAAATGAATGAACGAATGCAT 58.042 33.333 0.00 0.00 0.00 3.96
687 772 3.724374 CCTTATTATTCCGTCCGCTTCA 58.276 45.455 0.00 0.00 0.00 3.02
689 774 2.158871 TGCCTTATTATTCCGTCCGCTT 60.159 45.455 0.00 0.00 0.00 4.68
696 781 3.548014 CCAAGCGTTGCCTTATTATTCCG 60.548 47.826 0.00 0.00 0.00 4.30
710 795 5.659440 AAATTACATCCATTCCAAGCGTT 57.341 34.783 0.00 0.00 0.00 4.84
739 824 6.160576 AGTTACCCGTAAGTAAAAGACACA 57.839 37.500 0.00 0.00 34.13 3.72
744 829 5.576774 CCGGTAAGTTACCCGTAAGTAAAAG 59.423 44.000 23.54 7.22 46.27 2.27
745 830 5.474825 CCGGTAAGTTACCCGTAAGTAAAA 58.525 41.667 23.54 0.00 46.27 1.52
746 831 4.619628 GCCGGTAAGTTACCCGTAAGTAAA 60.620 45.833 23.54 0.00 46.27 2.01
747 832 3.119280 GCCGGTAAGTTACCCGTAAGTAA 60.119 47.826 23.54 0.00 46.27 2.24
748 833 2.425668 GCCGGTAAGTTACCCGTAAGTA 59.574 50.000 23.54 0.00 46.27 2.24
749 834 1.204704 GCCGGTAAGTTACCCGTAAGT 59.795 52.381 23.54 0.00 46.27 2.24
750 835 1.471501 GGCCGGTAAGTTACCCGTAAG 60.472 57.143 23.54 10.88 46.27 2.34
751 836 0.534873 GGCCGGTAAGTTACCCGTAA 59.465 55.000 23.54 0.00 46.27 3.18
752 837 0.613292 TGGCCGGTAAGTTACCCGTA 60.613 55.000 23.54 9.97 46.27 4.02
753 838 1.479368 TTGGCCGGTAAGTTACCCGT 61.479 55.000 23.54 0.00 46.27 5.28
754 839 0.741927 CTTGGCCGGTAAGTTACCCG 60.742 60.000 23.54 18.67 46.27 5.28
755 840 0.614812 TCTTGGCCGGTAAGTTACCC 59.385 55.000 23.54 12.13 46.27 3.69
756 841 2.010544 GCTCTTGGCCGGTAAGTTACC 61.011 57.143 20.46 20.46 45.52 2.85
757 842 1.338389 TGCTCTTGGCCGGTAAGTTAC 60.338 52.381 16.69 4.32 40.92 2.50
758 843 0.978151 TGCTCTTGGCCGGTAAGTTA 59.022 50.000 16.69 5.70 40.92 2.24
839 925 2.785562 CCTGTTTGGATACCGTTTCCA 58.214 47.619 6.61 6.61 41.50 3.53
847 933 1.272480 ACTTGGGGCCTGTTTGGATAC 60.272 52.381 0.84 0.00 38.35 2.24
1018 1112 2.677848 GGAGGAAGGGGAAGTGGC 59.322 66.667 0.00 0.00 0.00 5.01
1129 1223 0.965866 GGTAGCAAGGGGAGTTTGGC 60.966 60.000 0.00 0.00 0.00 4.52
1134 1228 1.307084 GGAGGGTAGCAAGGGGAGT 60.307 63.158 0.00 0.00 0.00 3.85
1149 1243 1.136695 AGCAATCTGAAGCGAGAGGAG 59.863 52.381 0.00 0.00 35.48 3.69
1181 1275 1.616628 AGAGGGGTCAGCGGGAAAT 60.617 57.895 0.00 0.00 0.00 2.17
1198 1292 0.379669 GGCATGACAGGAAATCGCAG 59.620 55.000 0.00 0.00 0.00 5.18
1200 1294 1.031571 TGGGCATGACAGGAAATCGC 61.032 55.000 0.00 0.00 0.00 4.58
1425 1520 0.673644 CACGCAGTACTTCTTGGGGG 60.674 60.000 0.00 0.00 41.61 5.40
1529 1624 2.926778 AGCAGTTTCTTGAGCTCTGT 57.073 45.000 16.19 0.00 30.05 3.41
1743 1851 6.879458 ACCACATCAAAACTACACTCTAATCC 59.121 38.462 0.00 0.00 0.00 3.01
1945 2055 2.341543 CGCTCCTCCCATGATCCG 59.658 66.667 0.00 0.00 0.00 4.18
1964 2074 1.153862 GCCACTCGACAGCTCTGAG 60.154 63.158 3.60 0.00 35.85 3.35
2039 2150 9.464714 GACTCGCACTAATAGAAGAAATATCAA 57.535 33.333 0.00 0.00 0.00 2.57
2239 2353 4.572985 TCTTGTTTCCTGCAGTTTCATG 57.427 40.909 13.81 8.54 0.00 3.07
2297 2411 2.765699 TGCTTTGGAAGGCAAAAGAACT 59.234 40.909 0.00 0.00 35.79 3.01
2328 2442 6.763610 AGAACAACAACTAAGGAAGACAAGAG 59.236 38.462 0.00 0.00 0.00 2.85
2814 2930 1.369625 GACGTGGTTATTCAGCCAGG 58.630 55.000 0.00 0.00 44.03 4.45
2861 2977 8.147704 TCCTTTTCCTTGGTCAATTTTGTAATC 58.852 33.333 0.00 0.00 0.00 1.75
2985 3101 1.205417 CTGCTTTTAGGGTGCCAATGG 59.795 52.381 0.00 0.00 0.00 3.16
3019 3135 2.834549 TCATGAGGACAGAACTCTTCCC 59.165 50.000 0.00 0.00 35.98 3.97
3591 3707 8.995220 GTGTTTTATGTGTATGTTCTACAGGAA 58.005 33.333 0.00 0.00 0.00 3.36
3664 3782 4.724602 GCAATGTTGAACAAACTGCACAAC 60.725 41.667 19.16 7.05 38.92 3.32
3839 3959 0.894835 TCAACCATCTACTGCTGCGA 59.105 50.000 0.00 0.00 0.00 5.10
3864 3984 8.417106 CAGAGCTACTCCAGTTCTTTATATCAA 58.583 37.037 0.00 0.00 41.68 2.57
3957 4077 9.847224 ATATTATGGAACGGACAGAGTATTTTT 57.153 29.630 0.00 0.00 0.00 1.94
3961 4081 9.529823 TCTTATATTATGGAACGGACAGAGTAT 57.470 33.333 0.00 0.00 0.00 2.12
3962 4082 8.929260 TCTTATATTATGGAACGGACAGAGTA 57.071 34.615 0.00 0.00 0.00 2.59
3963 4083 7.506261 ACTCTTATATTATGGAACGGACAGAGT 59.494 37.037 0.00 0.00 33.00 3.24
3964 4084 7.810282 CACTCTTATATTATGGAACGGACAGAG 59.190 40.741 0.00 0.00 0.00 3.35
3965 4085 7.287005 ACACTCTTATATTATGGAACGGACAGA 59.713 37.037 0.00 0.00 0.00 3.41
3966 4086 7.434492 ACACTCTTATATTATGGAACGGACAG 58.566 38.462 0.00 0.00 0.00 3.51
3967 4087 7.356089 ACACTCTTATATTATGGAACGGACA 57.644 36.000 0.00 0.00 0.00 4.02
3968 4088 8.658499 AAACACTCTTATATTATGGAACGGAC 57.342 34.615 0.00 0.00 0.00 4.79
3969 4089 9.104965 CAAAACACTCTTATATTATGGAACGGA 57.895 33.333 0.00 0.00 0.00 4.69
3970 4090 9.104965 TCAAAACACTCTTATATTATGGAACGG 57.895 33.333 0.00 0.00 0.00 4.44
3971 4091 9.916397 GTCAAAACACTCTTATATTATGGAACG 57.084 33.333 0.00 0.00 0.00 3.95
3998 4118 6.525629 AGAGCATTTTTGACACTACTGTAGT 58.474 36.000 14.53 14.53 40.28 2.73
3999 4119 7.426929 AAGAGCATTTTTGACACTACTGTAG 57.573 36.000 13.13 13.13 0.00 2.74
4001 4121 7.986085 ATAAGAGCATTTTTGACACTACTGT 57.014 32.000 0.00 0.00 0.00 3.55
4007 4127 9.683069 CCCATAATATAAGAGCATTTTTGACAC 57.317 33.333 0.00 0.00 0.00 3.67
4008 4128 8.859090 CCCCATAATATAAGAGCATTTTTGACA 58.141 33.333 0.00 0.00 0.00 3.58
4009 4129 8.860088 ACCCCATAATATAAGAGCATTTTTGAC 58.140 33.333 0.00 0.00 0.00 3.18
4013 4133 9.520515 CACTACCCCATAATATAAGAGCATTTT 57.479 33.333 0.00 0.00 0.00 1.82
4014 4134 8.669571 ACACTACCCCATAATATAAGAGCATTT 58.330 33.333 0.00 0.00 0.00 2.32
4015 4135 8.219660 ACACTACCCCATAATATAAGAGCATT 57.780 34.615 0.00 0.00 0.00 3.56
4016 4136 7.457852 TGACACTACCCCATAATATAAGAGCAT 59.542 37.037 0.00 0.00 0.00 3.79
4017 4137 6.785466 TGACACTACCCCATAATATAAGAGCA 59.215 38.462 0.00 0.00 0.00 4.26
4018 4138 7.241042 TGACACTACCCCATAATATAAGAGC 57.759 40.000 0.00 0.00 0.00 4.09
4023 4143 9.073475 GCATTTTTGACACTACCCCATAATATA 57.927 33.333 0.00 0.00 0.00 0.86
4024 4144 7.784550 AGCATTTTTGACACTACCCCATAATAT 59.215 33.333 0.00 0.00 0.00 1.28
4025 4145 7.122715 AGCATTTTTGACACTACCCCATAATA 58.877 34.615 0.00 0.00 0.00 0.98
4026 4146 5.957774 AGCATTTTTGACACTACCCCATAAT 59.042 36.000 0.00 0.00 0.00 1.28
4027 4147 5.329399 AGCATTTTTGACACTACCCCATAA 58.671 37.500 0.00 0.00 0.00 1.90
4028 4148 4.929479 AGCATTTTTGACACTACCCCATA 58.071 39.130 0.00 0.00 0.00 2.74
4029 4149 3.763897 GAGCATTTTTGACACTACCCCAT 59.236 43.478 0.00 0.00 0.00 4.00
4030 4150 3.153919 GAGCATTTTTGACACTACCCCA 58.846 45.455 0.00 0.00 0.00 4.96
4031 4151 3.421844 AGAGCATTTTTGACACTACCCC 58.578 45.455 0.00 0.00 0.00 4.95
4032 4152 6.759497 ATAAGAGCATTTTTGACACTACCC 57.241 37.500 0.00 0.00 0.00 3.69
4037 4157 9.683069 CCCATAATATAAGAGCATTTTTGACAC 57.317 33.333 0.00 0.00 0.00 3.67
4038 4158 9.639563 TCCCATAATATAAGAGCATTTTTGACA 57.360 29.630 0.00 0.00 0.00 3.58
4039 4159 9.899226 GTCCCATAATATAAGAGCATTTTTGAC 57.101 33.333 0.00 0.00 0.00 3.18
4040 4160 8.783093 CGTCCCATAATATAAGAGCATTTTTGA 58.217 33.333 0.00 0.00 0.00 2.69
4041 4161 8.023128 CCGTCCCATAATATAAGAGCATTTTTG 58.977 37.037 0.00 0.00 0.00 2.44
4042 4162 7.942341 TCCGTCCCATAATATAAGAGCATTTTT 59.058 33.333 0.00 0.00 0.00 1.94
4043 4163 7.458397 TCCGTCCCATAATATAAGAGCATTTT 58.542 34.615 0.00 0.00 0.00 1.82
4044 4164 7.016153 TCCGTCCCATAATATAAGAGCATTT 57.984 36.000 0.00 0.00 0.00 2.32
4045 4165 6.352222 CCTCCGTCCCATAATATAAGAGCATT 60.352 42.308 0.00 0.00 0.00 3.56
4046 4166 5.129485 CCTCCGTCCCATAATATAAGAGCAT 59.871 44.000 0.00 0.00 0.00 3.79
4047 4167 4.466370 CCTCCGTCCCATAATATAAGAGCA 59.534 45.833 0.00 0.00 0.00 4.26
4048 4168 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
4049 4169 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
4050 4170 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
4051 4171 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
4052 4172 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
4053 4173 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
4054 4174 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
4055 4175 3.816842 GCTACTCCCTCCGTCCCATAATA 60.817 52.174 0.00 0.00 0.00 0.98
4056 4176 2.890814 CTACTCCCTCCGTCCCATAAT 58.109 52.381 0.00 0.00 0.00 1.28
4057 4177 1.756690 GCTACTCCCTCCGTCCCATAA 60.757 57.143 0.00 0.00 0.00 1.90
4058 4178 0.178970 GCTACTCCCTCCGTCCCATA 60.179 60.000 0.00 0.00 0.00 2.74
4059 4179 1.457831 GCTACTCCCTCCGTCCCAT 60.458 63.158 0.00 0.00 0.00 4.00
4060 4180 2.043248 GCTACTCCCTCCGTCCCA 60.043 66.667 0.00 0.00 0.00 4.37
4061 4181 0.976590 AAAGCTACTCCCTCCGTCCC 60.977 60.000 0.00 0.00 0.00 4.46
4062 4182 0.175989 CAAAGCTACTCCCTCCGTCC 59.824 60.000 0.00 0.00 0.00 4.79
4063 4183 1.183549 TCAAAGCTACTCCCTCCGTC 58.816 55.000 0.00 0.00 0.00 4.79
4064 4184 1.550976 CTTCAAAGCTACTCCCTCCGT 59.449 52.381 0.00 0.00 0.00 4.69
4065 4185 1.825474 TCTTCAAAGCTACTCCCTCCG 59.175 52.381 0.00 0.00 0.00 4.63
4066 4186 3.515901 TCTTCTTCAAAGCTACTCCCTCC 59.484 47.826 0.00 0.00 0.00 4.30
4067 4187 4.464597 TCTCTTCTTCAAAGCTACTCCCTC 59.535 45.833 0.00 0.00 0.00 4.30
4068 4188 4.421131 TCTCTTCTTCAAAGCTACTCCCT 58.579 43.478 0.00 0.00 0.00 4.20
4069 4189 4.810191 TCTCTTCTTCAAAGCTACTCCC 57.190 45.455 0.00 0.00 0.00 4.30
4070 4190 5.105146 TCCATCTCTTCTTCAAAGCTACTCC 60.105 44.000 0.00 0.00 0.00 3.85
4071 4191 5.971763 TCCATCTCTTCTTCAAAGCTACTC 58.028 41.667 0.00 0.00 0.00 2.59
4072 4192 6.169800 GTTCCATCTCTTCTTCAAAGCTACT 58.830 40.000 0.00 0.00 0.00 2.57
4073 4193 5.352846 GGTTCCATCTCTTCTTCAAAGCTAC 59.647 44.000 0.00 0.00 0.00 3.58
4074 4194 5.249393 AGGTTCCATCTCTTCTTCAAAGCTA 59.751 40.000 0.00 0.00 0.00 3.32
4075 4195 4.042684 AGGTTCCATCTCTTCTTCAAAGCT 59.957 41.667 0.00 0.00 0.00 3.74
4076 4196 4.331108 AGGTTCCATCTCTTCTTCAAAGC 58.669 43.478 0.00 0.00 0.00 3.51
4077 4197 6.765512 GGATAGGTTCCATCTCTTCTTCAAAG 59.234 42.308 0.00 0.00 44.74 2.77
4078 4198 6.653989 GGATAGGTTCCATCTCTTCTTCAAA 58.346 40.000 0.00 0.00 44.74 2.69
4079 4199 6.240549 GGATAGGTTCCATCTCTTCTTCAA 57.759 41.667 0.00 0.00 44.74 2.69
4080 4200 5.878406 GGATAGGTTCCATCTCTTCTTCA 57.122 43.478 0.00 0.00 44.74 3.02
4124 4244 9.866655 AGTAGAAGAGACAGAATCATCTTATCT 57.133 33.333 0.00 7.59 33.26 1.98
4127 4247 9.693739 AGAAGTAGAAGAGACAGAATCATCTTA 57.306 33.333 0.00 0.00 32.31 2.10
4128 4248 8.593945 AGAAGTAGAAGAGACAGAATCATCTT 57.406 34.615 0.00 0.00 34.78 2.40
4140 4260 8.429237 AATTGAGAAGGAAGAAGTAGAAGAGA 57.571 34.615 0.00 0.00 0.00 3.10
4141 4261 8.310382 TGAATTGAGAAGGAAGAAGTAGAAGAG 58.690 37.037 0.00 0.00 0.00 2.85
4144 4264 8.195165 TCTGAATTGAGAAGGAAGAAGTAGAA 57.805 34.615 0.00 0.00 0.00 2.10
4145 4265 7.782897 TCTGAATTGAGAAGGAAGAAGTAGA 57.217 36.000 0.00 0.00 0.00 2.59
4159 4286 6.883217 TCTCTTGAGGGAATTTCTGAATTGAG 59.117 38.462 0.00 0.00 35.65 3.02
4160 4287 6.782986 TCTCTTGAGGGAATTTCTGAATTGA 58.217 36.000 0.00 0.00 35.65 2.57
4165 4292 3.843027 AGCTCTCTTGAGGGAATTTCTGA 59.157 43.478 1.07 0.00 40.53 3.27
4166 4293 4.190772 GAGCTCTCTTGAGGGAATTTCTG 58.809 47.826 6.43 0.00 40.53 3.02
4182 4309 5.455899 GGTTTGATCATAATCAGGGAGCTCT 60.456 44.000 14.64 0.00 42.72 4.09
4185 4312 3.499918 CGGTTTGATCATAATCAGGGAGC 59.500 47.826 0.00 0.00 42.72 4.70
4190 4317 3.627123 TGCACCGGTTTGATCATAATCAG 59.373 43.478 2.97 0.00 42.72 2.90
4194 4321 5.883115 TCTTAATGCACCGGTTTGATCATAA 59.117 36.000 2.97 0.00 0.00 1.90
4211 4338 5.231357 TCGTGCTACGTGCTAAATCTTAATG 59.769 40.000 0.00 0.00 43.14 1.90
4219 4346 1.541475 CGATCGTGCTACGTGCTAAA 58.459 50.000 7.03 0.00 43.14 1.85
4223 4350 2.101575 TCCGATCGTGCTACGTGC 59.898 61.111 15.09 0.00 43.14 5.34
4227 4354 0.867753 CAGCAGTCCGATCGTGCTAC 60.868 60.000 25.47 13.05 45.82 3.58
4231 4358 1.485838 GATGCAGCAGTCCGATCGTG 61.486 60.000 15.09 7.11 0.00 4.35
4238 4365 1.153086 ATTCCGGATGCAGCAGTCC 60.153 57.895 4.15 7.47 0.00 3.85
4248 4375 9.408648 AGAAATCAACTAAAATACATTCCGGAT 57.591 29.630 4.15 0.00 0.00 4.18
4251 4378 7.967854 TGCAGAAATCAACTAAAATACATTCCG 59.032 33.333 0.00 0.00 0.00 4.30
4277 4406 8.893727 CATTAGCACAGTATTTAGTTTAGGCTT 58.106 33.333 0.00 0.00 0.00 4.35
4318 4447 5.943416 TCAGTTATGGTGGAAATCGTGAATT 59.057 36.000 0.00 0.00 0.00 2.17
4324 4453 9.801873 AAATAAAATCAGTTATGGTGGAAATCG 57.198 29.630 0.00 0.00 0.00 3.34
4356 4485 6.409704 TGCAGTCTAGACTTTGCATCTTAAT 58.590 36.000 27.11 1.81 40.20 1.40
4357 4486 5.793817 TGCAGTCTAGACTTTGCATCTTAA 58.206 37.500 27.11 10.69 40.20 1.85
4358 4487 5.405935 TGCAGTCTAGACTTTGCATCTTA 57.594 39.130 27.11 11.27 40.20 2.10
4369 4498 8.030106 ACTCTAACTACATTTTGCAGTCTAGAC 58.970 37.037 15.41 15.41 0.00 2.59
4376 4505 6.621596 GCAAGGACTCTAACTACATTTTGCAG 60.622 42.308 0.00 0.00 37.65 4.41
4379 4508 6.128172 CCAGCAAGGACTCTAACTACATTTTG 60.128 42.308 0.00 0.00 41.22 2.44
4414 4543 8.493607 TGGTTGTGGATATGAGAATTTAGATGA 58.506 33.333 0.00 0.00 0.00 2.92
4416 4545 7.721399 GGTGGTTGTGGATATGAGAATTTAGAT 59.279 37.037 0.00 0.00 0.00 1.98
4417 4546 7.054124 GGTGGTTGTGGATATGAGAATTTAGA 58.946 38.462 0.00 0.00 0.00 2.10
4419 4548 6.969043 AGGTGGTTGTGGATATGAGAATTTA 58.031 36.000 0.00 0.00 0.00 1.40
4427 4556 3.885297 GGATCAAGGTGGTTGTGGATATG 59.115 47.826 0.00 0.00 37.43 1.78
4434 4563 3.650942 TGTAGAAGGATCAAGGTGGTTGT 59.349 43.478 0.00 0.00 37.43 3.32
4601 4730 8.315391 TCATTAGACTGAACATGAAACTGAAG 57.685 34.615 0.00 0.00 0.00 3.02
4750 4879 4.744137 TCAATTGGACATTTGCAAACTTCG 59.256 37.500 15.41 6.12 36.54 3.79
4835 4964 8.815565 TTCATACAATCAAGGGCAATTAGTTA 57.184 30.769 0.00 0.00 0.00 2.24
4838 4967 8.199449 ACAATTCATACAATCAAGGGCAATTAG 58.801 33.333 0.00 0.00 0.00 1.73
4839 4968 8.076910 ACAATTCATACAATCAAGGGCAATTA 57.923 30.769 0.00 0.00 0.00 1.40
4840 4969 6.949715 ACAATTCATACAATCAAGGGCAATT 58.050 32.000 0.00 0.00 0.00 2.32
4842 4971 5.999205 ACAATTCATACAATCAAGGGCAA 57.001 34.783 0.00 0.00 0.00 4.52
4843 4972 5.999205 AACAATTCATACAATCAAGGGCA 57.001 34.783 0.00 0.00 0.00 5.36
4845 4974 9.874205 ACAATAAACAATTCATACAATCAAGGG 57.126 29.630 0.00 0.00 0.00 3.95
4860 5003 6.441274 CACACTGAAGCTGACAATAAACAAT 58.559 36.000 0.00 0.00 0.00 2.71
4997 5140 9.847224 AGGAACCTATGAACGATATTGTAAATT 57.153 29.630 0.00 0.00 0.00 1.82
4998 5141 9.490379 GAGGAACCTATGAACGATATTGTAAAT 57.510 33.333 0.00 0.00 0.00 1.40
4999 5142 8.479689 TGAGGAACCTATGAACGATATTGTAAA 58.520 33.333 0.00 0.00 0.00 2.01
5000 5143 8.014070 TGAGGAACCTATGAACGATATTGTAA 57.986 34.615 0.00 0.00 0.00 2.41
5001 5144 7.591421 TGAGGAACCTATGAACGATATTGTA 57.409 36.000 0.00 0.00 0.00 2.41
5002 5145 6.479972 TGAGGAACCTATGAACGATATTGT 57.520 37.500 0.00 0.00 0.00 2.71
5003 5146 7.630924 GTTTGAGGAACCTATGAACGATATTG 58.369 38.462 0.00 0.00 31.85 1.90
5004 5147 7.787725 GTTTGAGGAACCTATGAACGATATT 57.212 36.000 0.00 0.00 31.85 1.28
5017 5160 5.593668 ACAAGGGACTGGTTTGAGGAACC 62.594 52.174 1.05 1.05 41.93 3.62
5018 5161 2.230660 CAAGGGACTGGTTTGAGGAAC 58.769 52.381 0.00 0.00 40.86 3.62
5019 5162 1.850345 ACAAGGGACTGGTTTGAGGAA 59.150 47.619 0.00 0.00 41.93 3.36
5020 5163 1.420138 GACAAGGGACTGGTTTGAGGA 59.580 52.381 0.00 0.00 41.93 3.71
5021 5164 1.421646 AGACAAGGGACTGGTTTGAGG 59.578 52.381 0.00 0.00 41.93 3.86
5022 5165 2.104792 TGAGACAAGGGACTGGTTTGAG 59.895 50.000 0.00 0.00 41.93 3.02
5023 5166 2.104792 CTGAGACAAGGGACTGGTTTGA 59.895 50.000 0.00 0.00 41.93 2.69
5024 5167 2.104792 TCTGAGACAAGGGACTGGTTTG 59.895 50.000 0.00 0.00 41.93 2.93
5025 5168 2.408565 TCTGAGACAAGGGACTGGTTT 58.591 47.619 0.00 0.00 41.93 3.27
5026 5169 2.103153 TCTGAGACAAGGGACTGGTT 57.897 50.000 0.00 0.00 41.93 3.67
5028 5171 3.492102 TTTTCTGAGACAAGGGACTGG 57.508 47.619 0.00 0.00 40.86 4.00
5029 5172 5.278660 CCAAATTTTCTGAGACAAGGGACTG 60.279 44.000 0.00 0.00 40.86 3.51
5031 5174 4.559502 GCCAAATTTTCTGAGACAAGGGAC 60.560 45.833 0.00 0.00 0.00 4.46
5032 5175 3.573967 GCCAAATTTTCTGAGACAAGGGA 59.426 43.478 0.00 0.00 0.00 4.20
5033 5176 3.575687 AGCCAAATTTTCTGAGACAAGGG 59.424 43.478 0.00 0.00 0.00 3.95
5034 5177 4.861102 AGCCAAATTTTCTGAGACAAGG 57.139 40.909 0.00 0.00 0.00 3.61
5035 5178 6.566197 AGTAGCCAAATTTTCTGAGACAAG 57.434 37.500 0.00 0.00 0.00 3.16
5036 5179 5.179368 CGAGTAGCCAAATTTTCTGAGACAA 59.821 40.000 0.00 0.00 0.00 3.18
5037 5180 4.690748 CGAGTAGCCAAATTTTCTGAGACA 59.309 41.667 0.00 0.00 0.00 3.41
5038 5181 4.929808 TCGAGTAGCCAAATTTTCTGAGAC 59.070 41.667 0.00 0.00 0.00 3.36
5039 5182 5.147330 TCGAGTAGCCAAATTTTCTGAGA 57.853 39.130 0.00 0.00 0.00 3.27
5040 5183 5.862924 TTCGAGTAGCCAAATTTTCTGAG 57.137 39.130 0.00 0.00 0.00 3.35
5041 5184 6.349280 CCAATTCGAGTAGCCAAATTTTCTGA 60.349 38.462 0.00 0.00 0.00 3.27
5042 5185 5.801947 CCAATTCGAGTAGCCAAATTTTCTG 59.198 40.000 0.00 0.00 0.00 3.02
5043 5186 5.476945 ACCAATTCGAGTAGCCAAATTTTCT 59.523 36.000 0.00 0.00 0.00 2.52
5044 5187 5.709966 ACCAATTCGAGTAGCCAAATTTTC 58.290 37.500 0.00 0.00 0.00 2.29
5045 5188 5.722021 ACCAATTCGAGTAGCCAAATTTT 57.278 34.783 0.00 0.00 0.00 1.82
5046 5189 5.469479 CAACCAATTCGAGTAGCCAAATTT 58.531 37.500 0.00 0.00 0.00 1.82
5047 5190 4.082245 CCAACCAATTCGAGTAGCCAAATT 60.082 41.667 0.00 0.00 0.00 1.82
5048 5191 3.443681 CCAACCAATTCGAGTAGCCAAAT 59.556 43.478 0.00 0.00 0.00 2.32
5049 5192 2.817258 CCAACCAATTCGAGTAGCCAAA 59.183 45.455 0.00 0.00 0.00 3.28
5050 5193 2.224670 ACCAACCAATTCGAGTAGCCAA 60.225 45.455 0.00 0.00 0.00 4.52
5051 5194 1.349688 ACCAACCAATTCGAGTAGCCA 59.650 47.619 0.00 0.00 0.00 4.75
5052 5195 2.109425 ACCAACCAATTCGAGTAGCC 57.891 50.000 0.00 0.00 0.00 3.93
5053 5196 3.858247 AGTACCAACCAATTCGAGTAGC 58.142 45.455 0.00 0.00 0.00 3.58
5054 5197 4.868734 GGAAGTACCAACCAATTCGAGTAG 59.131 45.833 0.00 0.00 38.79 2.57
5055 5198 4.529377 AGGAAGTACCAACCAATTCGAGTA 59.471 41.667 0.00 0.00 42.04 2.59
5056 5199 3.326880 AGGAAGTACCAACCAATTCGAGT 59.673 43.478 0.00 0.00 42.04 4.18
5057 5200 3.933332 GAGGAAGTACCAACCAATTCGAG 59.067 47.826 0.00 0.00 42.04 4.04
5058 5201 3.307199 GGAGGAAGTACCAACCAATTCGA 60.307 47.826 0.00 0.00 42.04 3.71
5059 5202 3.007635 GGAGGAAGTACCAACCAATTCG 58.992 50.000 0.00 0.00 42.04 3.34
5060 5203 4.028993 TGGAGGAAGTACCAACCAATTC 57.971 45.455 0.00 0.00 41.49 2.17
5061 5204 4.569865 GGATGGAGGAAGTACCAACCAATT 60.570 45.833 0.00 0.00 44.79 2.32
5062 5205 3.053619 GGATGGAGGAAGTACCAACCAAT 60.054 47.826 0.00 0.00 44.79 3.16
5063 5206 2.307686 GGATGGAGGAAGTACCAACCAA 59.692 50.000 0.00 0.00 44.79 3.67
5064 5207 1.913419 GGATGGAGGAAGTACCAACCA 59.087 52.381 0.00 0.00 44.79 3.67
5065 5208 1.134491 CGGATGGAGGAAGTACCAACC 60.134 57.143 0.00 0.00 42.93 3.77
5066 5209 1.829222 TCGGATGGAGGAAGTACCAAC 59.171 52.381 0.00 0.00 42.04 3.77
5067 5210 2.241281 TCGGATGGAGGAAGTACCAA 57.759 50.000 0.00 0.00 42.04 3.67
5068 5211 2.241281 TTCGGATGGAGGAAGTACCA 57.759 50.000 0.00 0.00 42.04 3.25
5069 5212 3.622166 TTTTCGGATGGAGGAAGTACC 57.378 47.619 0.00 0.00 39.35 3.34
5087 5230 5.366477 ACATCCATTTGAGGGACAAGTTTTT 59.634 36.000 0.00 0.00 39.77 1.94
5088 5231 4.901250 ACATCCATTTGAGGGACAAGTTTT 59.099 37.500 0.00 0.00 39.77 2.43
5089 5232 4.482990 ACATCCATTTGAGGGACAAGTTT 58.517 39.130 0.00 0.00 39.77 2.66
5090 5233 4.118168 ACATCCATTTGAGGGACAAGTT 57.882 40.909 0.00 0.00 39.77 2.66
5091 5234 3.814504 ACATCCATTTGAGGGACAAGT 57.185 42.857 0.00 0.00 39.77 3.16
5092 5235 5.688807 AGATACATCCATTTGAGGGACAAG 58.311 41.667 0.00 0.00 39.77 3.16
5093 5236 5.715439 AGATACATCCATTTGAGGGACAA 57.285 39.130 0.00 0.00 37.23 3.18
5094 5237 5.221722 GCTAGATACATCCATTTGAGGGACA 60.222 44.000 0.00 0.00 37.23 4.02
5095 5238 5.221722 TGCTAGATACATCCATTTGAGGGAC 60.222 44.000 0.00 0.00 37.23 4.46
5096 5239 4.907269 TGCTAGATACATCCATTTGAGGGA 59.093 41.667 0.00 0.00 39.14 4.20
5097 5240 4.999950 GTGCTAGATACATCCATTTGAGGG 59.000 45.833 0.00 0.00 0.00 4.30
5098 5241 4.999950 GGTGCTAGATACATCCATTTGAGG 59.000 45.833 0.00 0.00 0.00 3.86
5099 5242 5.468072 GTGGTGCTAGATACATCCATTTGAG 59.532 44.000 0.00 0.00 0.00 3.02
5100 5243 5.104569 TGTGGTGCTAGATACATCCATTTGA 60.105 40.000 0.00 0.00 0.00 2.69
5101 5244 5.125356 TGTGGTGCTAGATACATCCATTTG 58.875 41.667 0.00 0.00 0.00 2.32
5102 5245 5.372343 TGTGGTGCTAGATACATCCATTT 57.628 39.130 0.00 0.00 0.00 2.32
5103 5246 5.573380 ATGTGGTGCTAGATACATCCATT 57.427 39.130 0.00 0.00 0.00 3.16
5104 5247 5.573380 AATGTGGTGCTAGATACATCCAT 57.427 39.130 0.00 0.00 32.97 3.41
5105 5248 5.104569 TCAAATGTGGTGCTAGATACATCCA 60.105 40.000 0.00 0.00 32.97 3.41
5106 5249 5.368145 TCAAATGTGGTGCTAGATACATCC 58.632 41.667 0.00 0.00 32.97 3.51
5107 5250 6.283694 TCTCAAATGTGGTGCTAGATACATC 58.716 40.000 0.00 0.00 32.97 3.06
5108 5251 6.239217 TCTCAAATGTGGTGCTAGATACAT 57.761 37.500 0.00 0.00 35.43 2.29
5109 5252 5.675684 TCTCAAATGTGGTGCTAGATACA 57.324 39.130 0.00 0.00 0.00 2.29
5110 5253 6.985188 TTTCTCAAATGTGGTGCTAGATAC 57.015 37.500 0.00 0.00 0.00 2.24
5111 5254 7.994425 TTTTTCTCAAATGTGGTGCTAGATA 57.006 32.000 0.00 0.00 0.00 1.98
5112 5255 6.899393 TTTTTCTCAAATGTGGTGCTAGAT 57.101 33.333 0.00 0.00 0.00 1.98
5132 5275 8.150945 TCAAAGTCTGCTACTATCTCTGTTTTT 58.849 33.333 0.00 0.00 37.50 1.94
5133 5276 7.671302 TCAAAGTCTGCTACTATCTCTGTTTT 58.329 34.615 0.00 0.00 37.50 2.43
5134 5277 7.233389 TCAAAGTCTGCTACTATCTCTGTTT 57.767 36.000 0.00 0.00 37.50 2.83
5135 5278 6.842437 TCAAAGTCTGCTACTATCTCTGTT 57.158 37.500 0.00 0.00 37.50 3.16
5136 5279 6.842437 TTCAAAGTCTGCTACTATCTCTGT 57.158 37.500 0.00 0.00 37.50 3.41
5137 5280 7.319646 ACTTTCAAAGTCTGCTACTATCTCTG 58.680 38.462 0.00 0.00 37.02 3.35
5138 5281 7.475137 ACTTTCAAAGTCTGCTACTATCTCT 57.525 36.000 0.00 0.00 37.02 3.10
5156 5299 4.016444 AGAGTTGTTGCTTTGGACTTTCA 58.984 39.130 0.00 0.00 0.00 2.69
5160 5303 3.142174 GCTAGAGTTGTTGCTTTGGACT 58.858 45.455 0.00 0.00 0.00 3.85
5210 5353 4.577283 GGGTACAGTCTGCACTTTGTAAAA 59.423 41.667 0.00 0.00 0.00 1.52
5227 5370 4.338682 GTGTACACAATTGTTTGGGGTACA 59.661 41.667 24.12 24.12 45.34 2.90
5231 5374 2.695666 TGGTGTACACAATTGTTTGGGG 59.304 45.455 26.51 0.00 40.78 4.96
5284 5427 2.874694 CGATCCTGCAATCACGCCG 61.875 63.158 0.00 0.00 0.00 6.46
5296 5439 2.139323 TAGTGTAGTGTGCCGATCCT 57.861 50.000 0.00 0.00 0.00 3.24
5307 5450 6.994221 AGACAAGCAAGTGTATTAGTGTAGT 58.006 36.000 0.00 0.00 0.00 2.73
5430 5574 3.446516 AGATCAATGAGGAGGCAAAAAGC 59.553 43.478 0.00 0.00 44.65 3.51
5460 5606 4.454161 ACGTCACTAACTTGCATGCAAATA 59.546 37.500 31.37 24.35 35.33 1.40
5503 5649 9.725019 TCTGTTTGCTGATCTTTTTCTCTATTA 57.275 29.630 0.00 0.00 0.00 0.98
5512 5658 7.322664 TCAACTTTTCTGTTTGCTGATCTTTT 58.677 30.769 0.00 0.00 0.00 2.27
5513 5659 6.866480 TCAACTTTTCTGTTTGCTGATCTTT 58.134 32.000 0.00 0.00 0.00 2.52
5565 5716 9.788960 GTTTAGTTCTTTTGAAGACAATCAACT 57.211 29.630 0.00 0.00 38.95 3.16
5581 5732 9.668497 ACAGTCAACTTTTCTAGTTTAGTTCTT 57.332 29.630 0.00 0.00 44.73 2.52
5582 5733 9.315525 GACAGTCAACTTTTCTAGTTTAGTTCT 57.684 33.333 0.00 0.00 44.73 3.01
5583 5734 8.267367 CGACAGTCAACTTTTCTAGTTTAGTTC 58.733 37.037 0.41 0.00 44.73 3.01
5584 5735 7.254353 GCGACAGTCAACTTTTCTAGTTTAGTT 60.254 37.037 0.41 0.00 44.73 2.24
5585 5736 6.200475 GCGACAGTCAACTTTTCTAGTTTAGT 59.800 38.462 0.41 0.00 44.73 2.24
5586 5737 6.421202 AGCGACAGTCAACTTTTCTAGTTTAG 59.579 38.462 0.41 0.00 44.73 1.85
5587 5738 6.278363 AGCGACAGTCAACTTTTCTAGTTTA 58.722 36.000 0.41 0.00 44.73 2.01
5588 5739 5.116882 AGCGACAGTCAACTTTTCTAGTTT 58.883 37.500 0.41 0.00 44.73 2.66
5590 5741 4.299978 GAGCGACAGTCAACTTTTCTAGT 58.700 43.478 0.41 0.00 39.32 2.57
5591 5742 3.675698 GGAGCGACAGTCAACTTTTCTAG 59.324 47.826 0.41 0.00 0.00 2.43
5592 5743 3.321111 AGGAGCGACAGTCAACTTTTCTA 59.679 43.478 0.41 0.00 0.00 2.10
5593 5744 2.103263 AGGAGCGACAGTCAACTTTTCT 59.897 45.455 0.41 0.00 0.00 2.52
5594 5745 2.476997 GAGGAGCGACAGTCAACTTTTC 59.523 50.000 0.41 0.00 0.00 2.29
5595 5746 2.103263 AGAGGAGCGACAGTCAACTTTT 59.897 45.455 0.41 0.00 0.00 2.27
5596 5747 1.689273 AGAGGAGCGACAGTCAACTTT 59.311 47.619 0.41 0.00 0.00 2.66
5597 5748 1.333177 AGAGGAGCGACAGTCAACTT 58.667 50.000 0.41 0.00 0.00 2.66
5598 5749 2.088423 CTAGAGGAGCGACAGTCAACT 58.912 52.381 0.41 0.00 0.00 3.16
5599 5750 1.813786 ACTAGAGGAGCGACAGTCAAC 59.186 52.381 0.00 0.00 0.00 3.18
5600 5751 2.201921 ACTAGAGGAGCGACAGTCAA 57.798 50.000 0.00 0.00 0.00 3.18
5601 5752 2.500504 TCTACTAGAGGAGCGACAGTCA 59.499 50.000 0.00 0.00 0.00 3.41
5604 5755 3.188159 ACTCTACTAGAGGAGCGACAG 57.812 52.381 16.10 0.00 46.45 3.51
5609 5760 4.159244 TCCTGAACTCTACTAGAGGAGC 57.841 50.000 16.10 6.60 46.45 4.70
5620 5771 9.220767 GTAGTTTGTTTTATGATCCTGAACTCT 57.779 33.333 0.00 0.00 0.00 3.24
5720 5871 3.540617 TGCAATGGTAAGCATCGTATGT 58.459 40.909 0.00 0.00 35.51 2.29
5784 5935 7.798710 TCATATCTAGCCTAACTGCCTAATT 57.201 36.000 0.00 0.00 0.00 1.40
5785 5936 7.798710 TTCATATCTAGCCTAACTGCCTAAT 57.201 36.000 0.00 0.00 0.00 1.73
5786 5937 7.442656 GTTTCATATCTAGCCTAACTGCCTAA 58.557 38.462 0.00 0.00 0.00 2.69
5787 5938 6.014499 GGTTTCATATCTAGCCTAACTGCCTA 60.014 42.308 0.00 0.00 0.00 3.93
5788 5939 5.221742 GGTTTCATATCTAGCCTAACTGCCT 60.222 44.000 0.00 0.00 0.00 4.75
5789 5940 4.998033 GGTTTCATATCTAGCCTAACTGCC 59.002 45.833 0.00 0.00 0.00 4.85
5790 5941 4.998033 GGGTTTCATATCTAGCCTAACTGC 59.002 45.833 0.00 0.00 0.00 4.40
5791 5942 6.174720 TGGGTTTCATATCTAGCCTAACTG 57.825 41.667 0.00 0.00 0.00 3.16
5828 5979 9.170584 CTTCTCTCTTTCGTATTTTGGTTTTTC 57.829 33.333 0.00 0.00 0.00 2.29
5840 5991 8.488651 ACTTTTTGTTTCTTCTCTCTTTCGTA 57.511 30.769 0.00 0.00 0.00 3.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.