Multiple sequence alignment - TraesCS1B01G204300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G204300 chr1B 100.000 9924 0 0 1 9924 368404270 368414193 0.000000e+00 18327.0
1 TraesCS1B01G204300 chr1B 91.525 118 6 4 3994 4109 87934497 87934612 1.030000e-34 159.0
2 TraesCS1B01G204300 chr1B 77.914 163 22 8 4195 4346 555767443 555767284 1.370000e-13 89.8
3 TraesCS1B01G204300 chr1B 84.884 86 5 3 1438 1515 4594770 4594855 8.260000e-11 80.5
4 TraesCS1B01G204300 chr1D 95.192 2891 69 15 4091 6955 233792044 233794890 0.000000e+00 4505.0
5 TraesCS1B01G204300 chr1D 97.039 2195 42 6 1827 3999 233789854 233792047 0.000000e+00 3672.0
6 TraesCS1B01G204300 chr1D 90.281 1461 70 29 42 1440 233788062 233789512 0.000000e+00 1845.0
7 TraesCS1B01G204300 chr1D 93.667 900 50 6 8256 9150 233796259 233797156 0.000000e+00 1339.0
8 TraesCS1B01G204300 chr1D 94.110 815 14 11 7055 7837 233794888 233795700 0.000000e+00 1208.0
9 TraesCS1B01G204300 chr1D 86.314 738 27 18 9209 9924 233797164 233797849 0.000000e+00 736.0
10 TraesCS1B01G204300 chr1D 95.166 331 16 0 1512 1842 233789509 233789839 3.180000e-144 523.0
11 TraesCS1B01G204300 chr1D 94.393 214 11 1 8045 8257 233796010 233796223 2.670000e-85 327.0
12 TraesCS1B01G204300 chr1D 98.113 159 3 0 7840 7998 254416444 254416286 2.730000e-70 278.0
13 TraesCS1B01G204300 chr1D 97.436 156 4 0 7840 7995 51878692 51878847 5.910000e-67 267.0
14 TraesCS1B01G204300 chr1D 94.340 106 5 1 3998 4102 379430025 379430130 2.870000e-35 161.0
15 TraesCS1B01G204300 chr1D 90.678 118 7 4 3994 4109 208035186 208035301 4.800000e-33 154.0
16 TraesCS1B01G204300 chr1D 93.939 99 6 0 3996 4094 409787381 409787283 6.210000e-32 150.0
17 TraesCS1B01G204300 chr1D 93.137 102 6 1 3993 4094 420554538 420554638 2.230000e-31 148.0
18 TraesCS1B01G204300 chr1D 90.805 87 5 2 177 261 67868301 67868216 8.150000e-21 113.0
19 TraesCS1B01G204300 chr1D 98.039 51 0 1 7997 8047 233795704 233795753 4.940000e-13 87.9
20 TraesCS1B01G204300 chr1D 88.312 77 1 8 195 269 426644223 426644153 1.780000e-12 86.1
21 TraesCS1B01G204300 chr1D 92.500 40 3 0 4195 4234 412164992 412164953 3.870000e-04 58.4
22 TraesCS1B01G204300 chr1A 94.502 1546 57 7 4720 6250 313908390 313906858 0.000000e+00 2359.0
23 TraesCS1B01G204300 chr1A 94.890 1135 39 4 2883 3999 313910237 313909104 0.000000e+00 1757.0
24 TraesCS1B01G204300 chr1A 88.649 1436 101 34 26 1440 313913408 313912014 0.000000e+00 1692.0
25 TraesCS1B01G204300 chr1A 96.985 962 21 3 1926 2884 313911409 313910453 0.000000e+00 1609.0
26 TraesCS1B01G204300 chr1A 95.318 897 39 3 8256 9150 313904630 313903735 0.000000e+00 1421.0
27 TraesCS1B01G204300 chr1A 93.297 731 27 10 9209 9923 313903727 313903003 0.000000e+00 1059.0
28 TraesCS1B01G204300 chr1A 96.833 600 13 2 6243 6842 313906529 313905936 0.000000e+00 998.0
29 TraesCS1B01G204300 chr1A 93.574 638 34 4 4093 4724 313909105 313908469 0.000000e+00 944.0
30 TraesCS1B01G204300 chr1A 97.148 526 14 1 7054 7578 313905740 313905215 0.000000e+00 887.0
31 TraesCS1B01G204300 chr1A 95.381 433 17 2 1512 1944 313912017 313911588 0.000000e+00 686.0
32 TraesCS1B01G204300 chr1A 97.004 267 3 1 7577 7843 313905184 313904923 2.540000e-120 444.0
33 TraesCS1B01G204300 chr1A 95.420 262 9 3 7997 8257 313904925 313904666 1.990000e-111 414.0
34 TraesCS1B01G204300 chr1A 98.742 159 2 0 7840 7998 554457562 554457720 5.870000e-72 283.0
35 TraesCS1B01G204300 chr1A 97.484 159 4 0 7840 7998 554455584 554455426 1.270000e-68 272.0
36 TraesCS1B01G204300 chr1A 96.226 159 6 0 7840 7998 224081826 224081984 2.750000e-65 261.0
37 TraesCS1B01G204300 chr1A 94.872 117 6 0 6838 6954 313905850 313905734 6.120000e-42 183.0
38 TraesCS1B01G204300 chr1A 92.105 114 8 1 3981 4094 432202620 432202732 1.030000e-34 159.0
39 TraesCS1B01G204300 chr1A 77.863 262 33 19 382 625 426625121 426624867 1.340000e-28 139.0
40 TraesCS1B01G204300 chr1A 85.321 109 11 4 388 494 18396313 18396208 3.790000e-19 108.0
41 TraesCS1B01G204300 chr1A 82.143 84 12 3 5759 5840 351347448 351347366 1.790000e-07 69.4
42 TraesCS1B01G204300 chr6A 93.316 389 26 0 5164 5552 351964831 351965219 8.640000e-160 575.0
43 TraesCS1B01G204300 chr6A 93.662 142 7 2 5839 5979 351965339 351965479 2.810000e-50 211.0
44 TraesCS1B01G204300 chr6A 89.062 128 11 2 5635 5760 351965214 351965340 1.330000e-33 156.0
45 TraesCS1B01G204300 chr6A 76.744 258 38 16 255 497 608120917 608120667 3.760000e-24 124.0
46 TraesCS1B01G204300 chr6A 77.311 119 24 3 4198 4315 13506083 13505967 6.430000e-07 67.6
47 TraesCS1B01G204300 chr5A 93.490 384 25 0 5164 5547 495422327 495421944 1.120000e-158 571.0
48 TraesCS1B01G204300 chr5A 92.958 142 8 2 5839 5979 495421819 495421679 1.310000e-48 206.0
49 TraesCS1B01G204300 chr5A 77.966 295 42 18 36 315 533566002 533565716 7.980000e-36 163.0
50 TraesCS1B01G204300 chr5A 88.800 125 11 2 5638 5760 495421941 495421818 6.210000e-32 150.0
51 TraesCS1B01G204300 chr5A 87.879 99 9 2 4108 4205 437410475 437410571 8.150000e-21 113.0
52 TraesCS1B01G204300 chr5A 84.211 76 5 3 1447 1515 1598341 1598416 6.430000e-07 67.6
53 TraesCS1B01G204300 chr7A 93.059 389 26 1 5164 5552 234330127 234329740 1.450000e-157 568.0
54 TraesCS1B01G204300 chr7A 92.802 389 26 1 5164 5552 554936791 554937177 6.730000e-156 562.0
55 TraesCS1B01G204300 chr7A 98.113 159 3 0 7840 7998 109219851 109220009 2.730000e-70 278.0
56 TraesCS1B01G204300 chr7A 91.156 147 6 3 5839 5979 554937297 554937442 1.020000e-44 193.0
57 TraesCS1B01G204300 chr7A 89.844 128 10 2 5635 5760 554937172 554937298 2.870000e-35 161.0
58 TraesCS1B01G204300 chr7A 89.600 125 10 2 5638 5760 234329742 234329619 1.330000e-33 156.0
59 TraesCS1B01G204300 chr7A 92.079 101 6 1 4109 4209 188573588 188573686 3.740000e-29 141.0
60 TraesCS1B01G204300 chr7A 86.885 122 13 3 375 495 95604635 95604516 6.250000e-27 134.0
61 TraesCS1B01G204300 chr7A 86.111 108 11 3 4106 4213 481698021 481698124 8.150000e-21 113.0
62 TraesCS1B01G204300 chr7A 84.466 103 13 2 4111 4212 172596140 172596040 2.280000e-16 99.0
63 TraesCS1B01G204300 chr6B 92.545 389 24 1 5164 5552 44864601 44864218 4.050000e-153 553.0
64 TraesCS1B01G204300 chr6B 98.113 159 3 0 7840 7998 450079974 450079816 2.730000e-70 278.0
65 TraesCS1B01G204300 chr6B 91.200 125 8 2 5638 5760 44864220 44864097 6.170000e-37 167.0
66 TraesCS1B01G204300 chr6B 95.960 99 4 0 3996 4094 641674165 641674067 2.870000e-35 161.0
67 TraesCS1B01G204300 chr6B 90.196 102 8 1 4107 4208 637093654 637093555 2.250000e-26 132.0
68 TraesCS1B01G204300 chr6B 79.793 193 27 8 338 521 348118632 348118821 8.090000e-26 130.0
69 TraesCS1B01G204300 chr6B 82.979 141 16 6 354 492 93823461 93823595 4.870000e-23 121.0
70 TraesCS1B01G204300 chr5B 90.025 401 23 3 5164 5552 248560775 248561170 4.140000e-138 503.0
71 TraesCS1B01G204300 chr5B 99.371 159 1 0 7840 7998 194461037 194461195 1.260000e-73 289.0
72 TraesCS1B01G204300 chr5B 89.062 128 11 2 5635 5760 248561165 248561291 1.330000e-33 156.0
73 TraesCS1B01G204300 chr5B 90.678 118 7 4 3994 4109 28937185 28937300 4.800000e-33 154.0
74 TraesCS1B01G204300 chr5B 90.678 118 7 4 3994 4109 34196032 34195917 4.800000e-33 154.0
75 TraesCS1B01G204300 chr5B 90.678 118 7 4 3994 4109 119314537 119314652 4.800000e-33 154.0
76 TraesCS1B01G204300 chr5B 74.178 426 70 29 84 495 417003825 417003426 3.740000e-29 141.0
77 TraesCS1B01G204300 chr5B 81.609 174 20 7 181 351 141498463 141498627 6.250000e-27 134.0
78 TraesCS1B01G204300 chr5B 85.859 99 10 3 4108 4205 394625517 394625612 1.760000e-17 102.0
79 TraesCS1B01G204300 chr5B 87.500 80 7 3 1439 1515 411545467 411545388 1.370000e-13 89.8
80 TraesCS1B01G204300 chr2B 90.176 397 22 3 5164 5548 116832197 116831806 1.490000e-137 501.0
81 TraesCS1B01G204300 chr2B 93.860 114 7 0 6946 7059 418953553 418953666 1.330000e-38 172.0
82 TraesCS1B01G204300 chr2B 94.595 111 6 0 6948 7058 584129389 584129499 1.330000e-38 172.0
83 TraesCS1B01G204300 chr2B 95.370 108 4 1 6954 7060 457144386 457144493 4.770000e-38 171.0
84 TraesCS1B01G204300 chr2B 95.050 101 5 0 3998 4098 53476114 53476214 1.030000e-34 159.0
85 TraesCS1B01G204300 chr2B 90.244 123 9 2 5640 5760 116831802 116831681 3.710000e-34 158.0
86 TraesCS1B01G204300 chr2B 87.500 136 13 4 6938 7072 355879552 355879684 4.800000e-33 154.0
87 TraesCS1B01G204300 chr2B 89.286 84 6 2 4134 4216 483456666 483456585 1.760000e-17 102.0
88 TraesCS1B01G204300 chr2B 85.882 85 4 5 1439 1515 86681059 86681143 6.390000e-12 84.2
89 TraesCS1B01G204300 chr2B 82.796 93 7 7 1438 1522 243188375 243188284 3.840000e-09 75.0
90 TraesCS1B01G204300 chr3B 98.742 159 2 0 7840 7998 101919666 101919824 5.870000e-72 283.0
91 TraesCS1B01G204300 chr3B 85.930 199 22 5 6100 6295 183601277 183601082 3.630000e-49 207.0
92 TraesCS1B01G204300 chr3B 91.525 118 6 4 3994 4109 451463439 451463324 1.030000e-34 159.0
93 TraesCS1B01G204300 chr3B 86.047 86 4 5 1440 1517 71400462 71400377 1.780000e-12 86.1
94 TraesCS1B01G204300 chr6D 98.113 159 3 0 7840 7998 45512184 45512342 2.730000e-70 278.0
95 TraesCS1B01G204300 chr6D 90.058 171 15 2 6124 6292 90135059 90134889 4.670000e-53 220.0
96 TraesCS1B01G204300 chr6D 76.244 442 63 25 85 496 444466030 444466459 7.860000e-46 196.0
97 TraesCS1B01G204300 chr6D 90.625 128 9 3 6942 7068 362051540 362051415 6.170000e-37 167.0
98 TraesCS1B01G204300 chr6D 95.876 97 4 0 7840 7936 44353059 44352963 3.710000e-34 158.0
99 TraesCS1B01G204300 chr6D 93.939 99 6 0 3998 4096 91559534 91559632 6.210000e-32 150.0
100 TraesCS1B01G204300 chr6D 93.000 100 7 0 3995 4094 808202 808301 8.030000e-31 147.0
101 TraesCS1B01G204300 chr6D 91.589 107 7 2 3991 4096 448790966 448790861 8.030000e-31 147.0
102 TraesCS1B01G204300 chr6D 91.429 105 9 0 3991 4095 319691675 319691571 2.890000e-30 145.0
103 TraesCS1B01G204300 chr6D 92.157 102 7 1 3997 4097 466538229 466538128 1.040000e-29 143.0
104 TraesCS1B01G204300 chr6D 88.889 117 10 3 3982 4095 362051541 362051425 3.740000e-29 141.0
105 TraesCS1B01G204300 chr6D 89.720 107 11 0 3992 4098 16366370 16366264 4.830000e-28 137.0
106 TraesCS1B01G204300 chr6D 89.189 111 11 1 3988 4097 374820197 374820307 4.830000e-28 137.0
107 TraesCS1B01G204300 chr6D 74.590 366 63 26 176 522 291238532 291238178 6.250000e-27 134.0
108 TraesCS1B01G204300 chr6D 91.398 93 3 3 5547 5636 134695707 134695797 1.350000e-23 122.0
109 TraesCS1B01G204300 chr6D 95.946 74 1 2 7926 7998 429811437 429811365 1.750000e-22 119.0
110 TraesCS1B01G204300 chr6D 89.247 93 4 5 176 264 18151862 18151772 2.930000e-20 111.0
111 TraesCS1B01G204300 chr6D 86.517 89 4 2 1439 1519 316259795 316259883 3.820000e-14 91.6
112 TraesCS1B01G204300 chr6D 88.889 72 6 1 193 262 387720209 387720280 4.940000e-13 87.9
113 TraesCS1B01G204300 chr6D 85.882 85 4 4 1439 1515 95724064 95724148 6.390000e-12 84.2
114 TraesCS1B01G204300 chr6D 80.531 113 12 5 1421 1525 455888201 455888091 2.970000e-10 78.7
115 TraesCS1B01G204300 chr6D 77.966 118 16 8 356 467 322987030 322986917 2.310000e-06 65.8
116 TraesCS1B01G204300 chr6D 94.444 36 2 0 5808 5843 24217505 24217470 1.000000e-03 56.5
117 TraesCS1B01G204300 chr5D 98.113 159 3 0 7840 7998 120799250 120799092 2.730000e-70 278.0
118 TraesCS1B01G204300 chr5D 98.113 159 3 0 7840 7998 503286680 503286522 2.730000e-70 278.0
119 TraesCS1B01G204300 chr5D 98.065 155 3 0 7840 7994 167071313 167071159 4.570000e-68 270.0
120 TraesCS1B01G204300 chr5D 92.105 114 9 0 3991 4104 299412217 299412330 2.870000e-35 161.0
121 TraesCS1B01G204300 chr5D 92.233 103 8 0 3991 4093 328911551 328911653 8.030000e-31 147.0
122 TraesCS1B01G204300 chr5D 76.645 304 47 22 36 326 522690574 522690282 8.030000e-31 147.0
123 TraesCS1B01G204300 chr5D 90.099 101 8 1 5542 5640 411995023 411995123 8.090000e-26 130.0
124 TraesCS1B01G204300 chr5D 93.182 88 3 2 5547 5631 382868500 382868413 1.050000e-24 126.0
125 TraesCS1B01G204300 chr5D 80.571 175 19 8 178 350 103612765 103612926 4.870000e-23 121.0
126 TraesCS1B01G204300 chr5D 84.946 93 5 5 1439 1522 325476125 325476217 1.780000e-12 86.1
127 TraesCS1B01G204300 chr5D 94.872 39 2 0 1477 1515 3563269 3563307 2.990000e-05 62.1
128 TraesCS1B01G204300 chr5D 87.273 55 0 4 1458 1505 3563266 3563212 1.000000e-03 56.5
129 TraesCS1B01G204300 chr5D 97.059 34 0 1 4284 4316 409020383 409020416 1.000000e-03 56.5
130 TraesCS1B01G204300 chr4D 98.113 159 3 0 7840 7998 35178772 35178614 2.730000e-70 278.0
131 TraesCS1B01G204300 chr4D 90.798 163 13 2 6134 6294 465125468 465125306 6.040000e-52 217.0
132 TraesCS1B01G204300 chr4D 96.183 131 5 0 7868 7998 417108885 417108755 2.170000e-51 215.0
133 TraesCS1B01G204300 chr4D 77.441 297 39 18 82 364 86502121 86501839 1.730000e-32 152.0
134 TraesCS1B01G204300 chr4D 94.059 101 5 1 3994 4094 330800304 330800403 1.730000e-32 152.0
135 TraesCS1B01G204300 chr4D 80.905 199 29 8 63 258 446108748 446108556 2.230000e-31 148.0
136 TraesCS1B01G204300 chr4D 90.741 108 10 0 3991 4098 24864670 24864777 2.890000e-30 145.0
137 TraesCS1B01G204300 chr4D 92.929 99 7 0 3997 4095 26254049 26253951 2.890000e-30 145.0
138 TraesCS1B01G204300 chr4D 89.474 114 11 1 3982 4094 175795032 175794919 1.040000e-29 143.0
139 TraesCS1B01G204300 chr4D 98.077 52 1 0 7856 7907 406428708 406428759 3.820000e-14 91.6
140 TraesCS1B01G204300 chr4D 100.000 49 0 0 7840 7888 504873909 504873957 3.820000e-14 91.6
141 TraesCS1B01G204300 chr4D 85.393 89 9 2 178 263 86095901 86095814 1.370000e-13 89.8
142 TraesCS1B01G204300 chr4D 83.529 85 6 5 1439 1515 31338351 31338435 1.380000e-08 73.1
143 TraesCS1B01G204300 chr4D 84.615 78 5 2 1447 1517 312566562 312566485 4.970000e-08 71.3
144 TraesCS1B01G204300 chr4D 81.609 87 6 7 1438 1515 179773116 179773201 8.320000e-06 63.9
145 TraesCS1B01G204300 chr4D 97.059 34 1 0 1483 1516 85911738 85911771 3.870000e-04 58.4
146 TraesCS1B01G204300 chr7D 97.484 159 4 0 7840 7998 389527243 389527401 1.270000e-68 272.0
147 TraesCS1B01G204300 chr7D 97.710 131 3 0 7840 7970 141163673 141163803 1.000000e-54 226.0
148 TraesCS1B01G204300 chr7D 97.656 128 3 0 7840 7967 152225935 152225808 4.670000e-53 220.0
149 TraesCS1B01G204300 chr7D 84.184 196 18 10 176 364 530340795 530340606 2.850000e-40 178.0
150 TraesCS1B01G204300 chr7D 76.471 357 50 20 178 509 14576589 14576936 7.980000e-36 163.0
151 TraesCS1B01G204300 chr7D 93.333 105 7 0 3991 4095 80971202 80971098 1.330000e-33 156.0
152 TraesCS1B01G204300 chr7D 92.593 108 8 0 3990 4097 190163223 190163116 1.330000e-33 156.0
153 TraesCS1B01G204300 chr7D 93.396 106 6 1 3990 4095 545397641 545397537 1.330000e-33 156.0
154 TraesCS1B01G204300 chr7D 94.000 100 6 0 3998 4097 51550638 51550737 1.730000e-32 152.0
155 TraesCS1B01G204300 chr7D 89.655 116 8 3 3983 4094 426783457 426783572 2.890000e-30 145.0
156 TraesCS1B01G204300 chr7D 86.466 133 14 4 366 496 153125976 153125846 1.040000e-29 143.0
157 TraesCS1B01G204300 chr7D 76.892 251 42 14 109 351 63383816 63384058 2.910000e-25 128.0
158 TraesCS1B01G204300 chr7D 91.304 92 6 1 5551 5640 362365386 362365295 3.760000e-24 124.0
159 TraesCS1B01G204300 chr7D 76.860 242 36 10 366 592 93092393 93092157 1.750000e-22 119.0
160 TraesCS1B01G204300 chr7D 88.095 84 4 2 1439 1516 576301082 576300999 2.950000e-15 95.3
161 TraesCS1B01G204300 chr7D 85.882 85 4 4 1439 1515 505588966 505589050 6.390000e-12 84.2
162 TraesCS1B01G204300 chr7D 84.884 86 5 4 1439 1516 617803303 617803218 8.260000e-11 80.5
163 TraesCS1B01G204300 chr7D 84.211 76 10 2 4111 4184 566128641 566128566 1.380000e-08 73.1
164 TraesCS1B01G204300 chr3D 81.269 331 40 14 178 492 393649611 393649287 2.140000e-61 248.0
165 TraesCS1B01G204300 chr3D 75.669 411 64 25 104 494 129262030 129261636 1.330000e-38 172.0
166 TraesCS1B01G204300 chr3D 97.895 95 2 0 7904 7998 598871775 598871869 2.220000e-36 165.0
167 TraesCS1B01G204300 chr3D 88.722 133 9 5 6938 7066 131009402 131009532 3.710000e-34 158.0
168 TraesCS1B01G204300 chr3D 90.722 97 7 1 5543 5637 341550653 341550557 2.910000e-25 128.0
169 TraesCS1B01G204300 chr3D 98.507 67 1 0 7928 7994 485924114 485924180 1.750000e-22 119.0
170 TraesCS1B01G204300 chr3D 84.746 118 13 4 382 495 613074048 613073932 8.150000e-21 113.0
171 TraesCS1B01G204300 chr3D 77.720 193 35 8 82 269 30289414 30289603 2.930000e-20 111.0
172 TraesCS1B01G204300 chr3D 91.667 72 4 1 4132 4203 463254008 463253939 2.280000e-16 99.0
173 TraesCS1B01G204300 chr3D 97.872 47 1 0 7859 7905 512904339 512904385 2.300000e-11 82.4
174 TraesCS1B01G204300 chr3D 81.034 116 7 10 375 476 613092904 613092790 2.970000e-10 78.7
175 TraesCS1B01G204300 chr3D 82.759 87 13 2 5756 5840 363599355 363599441 1.070000e-09 76.8
176 TraesCS1B01G204300 chr3D 97.143 35 1 0 1483 1517 73588953 73588987 1.080000e-04 60.2
177 TraesCS1B01G204300 chr3D 94.737 38 2 0 7908 7945 457189218 457189255 1.080000e-04 60.2
178 TraesCS1B01G204300 chr4A 90.909 165 14 1 6129 6292 150653311 150653475 4.670000e-53 220.0
179 TraesCS1B01G204300 chr4A 74.906 530 75 38 126 620 520202289 520202795 1.320000e-43 189.0
180 TraesCS1B01G204300 chr4A 96.078 102 4 0 3993 4094 475917226 475917327 6.170000e-37 167.0
181 TraesCS1B01G204300 chr4A 75.057 437 67 29 82 494 508863732 508864150 2.220000e-36 165.0
182 TraesCS1B01G204300 chr4A 90.909 121 8 3 6938 7057 717237990 717237872 1.030000e-34 159.0
183 TraesCS1B01G204300 chr4A 77.580 281 41 20 82 349 738936774 738937045 6.210000e-32 150.0
184 TraesCS1B01G204300 chr4A 90.099 101 5 5 5535 5631 323048518 323048617 1.050000e-24 126.0
185 TraesCS1B01G204300 chrUn 90.909 165 12 2 6130 6293 96478385 96478223 1.680000e-52 219.0
186 TraesCS1B01G204300 chrUn 92.857 98 7 0 3992 4089 302640039 302640136 1.040000e-29 143.0
187 TraesCS1B01G204300 chrUn 92.857 98 7 0 3998 4095 347977189 347977092 1.040000e-29 143.0
188 TraesCS1B01G204300 chrUn 92.857 98 7 0 3998 4095 378080389 378080292 1.040000e-29 143.0
189 TraesCS1B01G204300 chrUn 90.476 105 10 0 3990 4094 8484447 8484343 1.340000e-28 139.0
190 TraesCS1B01G204300 chrUn 91.089 101 9 0 3998 4098 71312953 71312853 4.830000e-28 137.0
191 TraesCS1B01G204300 chrUn 91.837 98 8 0 3997 4094 155121092 155121189 4.830000e-28 137.0
192 TraesCS1B01G204300 chrUn 91.837 98 8 0 3997 4094 164264083 164263986 4.830000e-28 137.0
193 TraesCS1B01G204300 chrUn 91.837 98 8 0 3997 4094 391473165 391473262 4.830000e-28 137.0
194 TraesCS1B01G204300 chrUn 90.816 98 7 1 3998 4095 12894000 12894095 8.090000e-26 130.0
195 TraesCS1B01G204300 chrUn 90.000 100 10 0 3998 4097 98281204 98281105 8.090000e-26 130.0
196 TraesCS1B01G204300 chrUn 88.679 106 10 2 3989 4094 477580546 477580649 2.910000e-25 128.0
197 TraesCS1B01G204300 chrUn 95.455 66 2 1 7934 7998 268622462 268622527 4.900000e-18 104.0
198 TraesCS1B01G204300 chrUn 95.455 66 2 1 7934 7998 391790626 391790561 4.900000e-18 104.0
199 TraesCS1B01G204300 chrUn 89.189 74 6 2 423 495 82511353 82511425 3.820000e-14 91.6
200 TraesCS1B01G204300 chrUn 76.724 116 24 3 188 301 28332126 28332240 2.990000e-05 62.1
201 TraesCS1B01G204300 chr2A 88.889 180 17 3 6114 6291 70985762 70985584 1.680000e-52 219.0
202 TraesCS1B01G204300 chr4B 90.361 166 15 1 6129 6293 28724141 28724306 6.040000e-52 217.0
203 TraesCS1B01G204300 chr4B 95.327 107 4 1 6961 7067 186741671 186741776 1.710000e-37 169.0
204 TraesCS1B01G204300 chr4B 75.946 370 58 23 82 428 101834828 101835189 2.870000e-35 161.0
205 TraesCS1B01G204300 chr4B 90.678 118 7 4 3994 4109 461364461 461364346 4.800000e-33 154.0
206 TraesCS1B01G204300 chr4B 90.678 118 7 4 3994 4109 565913985 565913870 4.800000e-33 154.0
207 TraesCS1B01G204300 chr4B 90.351 114 8 3 3983 4095 21198637 21198748 8.030000e-31 147.0
208 TraesCS1B01G204300 chr4B 85.897 78 6 3 1439 1515 389117440 389117513 2.970000e-10 78.7
209 TraesCS1B01G204300 chr2D 77.197 421 55 28 102 494 85681319 85681726 3.630000e-49 207.0
210 TraesCS1B01G204300 chr2D 77.014 422 57 26 102 494 85682431 85682841 1.310000e-48 206.0
211 TraesCS1B01G204300 chr2D 76.960 421 58 26 102 494 85680208 85680617 4.700000e-48 204.0
212 TraesCS1B01G204300 chr2D 91.525 118 6 4 3994 4109 104311201 104311316 1.030000e-34 159.0
213 TraesCS1B01G204300 chr2D 92.453 106 8 0 3990 4095 7661711 7661606 1.730000e-32 152.0
214 TraesCS1B01G204300 chr2D 75.776 322 54 20 30 338 648543828 648543518 3.740000e-29 141.0
215 TraesCS1B01G204300 chr2D 83.444 151 15 9 109 253 85680301 85680447 2.250000e-26 132.0
216 TraesCS1B01G204300 chr2D 92.222 90 5 1 5548 5635 331544145 331544234 1.050000e-24 126.0
217 TraesCS1B01G204300 chr2D 85.417 96 6 6 379 471 484782896 484782986 1.060000e-14 93.5
218 TraesCS1B01G204300 chr2D 85.393 89 10 3 1437 1522 7646265 7646177 1.370000e-13 89.8
219 TraesCS1B01G204300 chr2D 82.895 76 6 6 1449 1517 508932710 508932785 2.990000e-05 62.1
220 TraesCS1B01G204300 chr7B 94.444 108 6 0 6961 7068 421056967 421056860 6.170000e-37 167.0
221 TraesCS1B01G204300 chr7B 94.340 106 5 1 3990 4095 589348422 589348318 2.870000e-35 161.0
222 TraesCS1B01G204300 chr7B 90.833 120 7 4 3992 4109 641705268 641705385 3.710000e-34 158.0
223 TraesCS1B01G204300 chr7B 81.522 184 20 12 366 538 115200231 115200051 1.340000e-28 139.0
224 TraesCS1B01G204300 chr7B 93.023 86 4 1 5548 5631 232259699 232259614 3.760000e-24 124.0
225 TraesCS1B01G204300 chr7B 79.878 164 25 8 343 501 13829670 13829830 8.150000e-21 113.0
226 TraesCS1B01G204300 chr7B 87.059 85 4 4 1439 1516 13869196 13869112 1.370000e-13 89.8
227 TraesCS1B01G204300 chr7B 83.333 96 7 8 1435 1522 485912777 485912871 8.260000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G204300 chr1B 368404270 368414193 9923 False 18327.000000 18327 100.000000 1 9924 1 chr1B.!!$F3 9923
1 TraesCS1B01G204300 chr1D 233788062 233797849 9787 False 1582.544444 4505 93.800111 42 9924 9 chr1D.!!$F5 9882
2 TraesCS1B01G204300 chr1A 313903003 313913408 10405 True 1111.769231 2359 94.913308 26 9923 13 chr1A.!!$R5 9897
3 TraesCS1B01G204300 chr6A 351964831 351965479 648 False 314.000000 575 92.013333 5164 5979 3 chr6A.!!$F1 815
4 TraesCS1B01G204300 chr5A 495421679 495422327 648 True 309.000000 571 91.749333 5164 5979 3 chr5A.!!$R2 815
5 TraesCS1B01G204300 chr7A 234329619 234330127 508 True 362.000000 568 91.329500 5164 5760 2 chr7A.!!$R3 596
6 TraesCS1B01G204300 chr7A 554936791 554937442 651 False 305.333333 562 91.267333 5164 5979 3 chr7A.!!$F4 815
7 TraesCS1B01G204300 chr6B 44864097 44864601 504 True 360.000000 553 91.872500 5164 5760 2 chr6B.!!$R4 596
8 TraesCS1B01G204300 chr5B 248560775 248561291 516 False 329.500000 503 89.543500 5164 5760 2 chr5B.!!$F6 596
9 TraesCS1B01G204300 chr2B 116831681 116832197 516 True 329.500000 501 90.210000 5164 5760 2 chr2B.!!$R3 596

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
939 989 0.462789 ATAAACCCTCGCGTCCGAAT 59.537 50.000 5.77 0.00 43.87 3.34 F
1238 1303 0.462047 CGGTGGCTTAGGGTTGCTAG 60.462 60.000 0.00 0.00 0.00 3.42 F
1705 1771 0.675837 ATGCTGAGTCAACTGCGCAT 60.676 50.000 12.24 10.19 37.50 4.73 F
1843 1939 2.334977 ACCTGTCATGGTGTTACCTCA 58.665 47.619 0.00 0.00 39.58 3.86 F
1863 1959 4.323417 TCATTCCGTAGAAACACAAGCAT 58.677 39.130 0.00 0.00 35.09 3.79 F
3556 4073 5.049828 TGCACGATCTATAATGTCAACCAG 58.950 41.667 0.00 0.00 0.00 4.00 F
4014 4549 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28 F
4015 4550 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44 F
4186 4721 1.200716 CCACCTCATCACATGCAACAC 59.799 52.381 0.00 0.00 0.00 3.32 F
5592 6248 1.784525 AGAGCGTTTGACACTAGTGC 58.215 50.000 22.90 15.35 0.00 4.40 F
6328 7333 2.174210 ACTTGCAGCTATGGATCCATGT 59.826 45.455 33.41 18.73 37.82 3.21 F
7346 8445 0.901124 ACAGCAGGAGAGTGATGGTC 59.099 55.000 0.00 0.00 38.19 4.02 F
7954 9121 0.038166 GCCATCTGTTGAGGGTGGAA 59.962 55.000 0.00 0.00 45.21 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1803 1869 1.728323 TGTCACCTCTCCAACATCCA 58.272 50.000 0.00 0.0 0.00 3.41 R
2478 2771 3.257393 CGCATATATGAGAACAGAGGGC 58.743 50.000 17.10 0.0 0.00 5.19 R
3340 3857 1.338105 CGAGTCCAGCCATTTGACAGA 60.338 52.381 0.00 0.0 0.00 3.41 R
3556 4073 3.365364 CCAAACCGTTTCTTCAGCATCTC 60.365 47.826 0.00 0.0 0.00 2.75 R
3917 4451 7.973388 CAGAGGACGAAATAATGGCAAAATTTA 59.027 33.333 9.56 0.0 0.00 1.40 R
4362 4898 1.738099 ACGTTGCCGCAGAGATGTC 60.738 57.895 0.00 0.0 37.70 3.06 R
5302 5946 4.789012 AGCAGTTCAAGAGAGAAGAGAG 57.211 45.455 0.00 0.0 0.00 3.20 R
5604 6260 5.046591 CCCTTCGTCCCATAATATAAGAGCA 60.047 44.000 0.00 0.0 0.00 4.26 R
6125 6791 3.117552 AGGAACGGAGGGAATAGTTCT 57.882 47.619 7.05 0.0 41.72 3.01 R
7036 8131 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.0 0.00 1.40 R
7935 9102 0.038166 TTCCACCCTCAACAGATGGC 59.962 55.000 0.00 0.0 0.00 4.40 R
8554 10021 0.457853 GTGCAATGCATCACAGCCAG 60.458 55.000 12.38 0.0 41.91 4.85 R
9207 10677 0.600557 CGGAGAGATATGCTTCCGCT 59.399 55.000 0.00 0.0 36.97 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.537729 CGAAAACATTTTTCTAGTACACGTTT 57.462 30.769 9.16 0.00 0.00 3.60
26 27 9.635632 CGAAAACATTTTTCTAGTACACGTTTA 57.364 29.630 9.16 0.00 0.00 2.01
34 35 8.801715 TTTTCTAGTACACGTTTAACTACTGG 57.198 34.615 0.00 3.84 0.00 4.00
35 36 7.510549 TTCTAGTACACGTTTAACTACTGGT 57.489 36.000 0.00 0.00 0.00 4.00
36 37 7.510549 TCTAGTACACGTTTAACTACTGGTT 57.489 36.000 0.00 0.00 41.54 3.67
37 38 8.615878 TCTAGTACACGTTTAACTACTGGTTA 57.384 34.615 0.00 0.00 39.17 2.85
38 39 9.062524 TCTAGTACACGTTTAACTACTGGTTAA 57.937 33.333 0.00 0.00 45.33 2.01
39 40 7.930513 AGTACACGTTTAACTACTGGTTAAC 57.069 36.000 0.00 0.00 46.25 2.01
40 41 7.488322 AGTACACGTTTAACTACTGGTTAACA 58.512 34.615 8.10 0.00 46.25 2.41
44 45 8.337532 ACACGTTTAACTACTGGTTAACATTTC 58.662 33.333 8.10 0.00 46.25 2.17
108 109 6.463360 ACATTTTTCAAATGCCCGATTAACT 58.537 32.000 8.77 0.00 0.00 2.24
161 162 9.698309 TCTATGCGAATTTTAACATTTCCAAAA 57.302 25.926 0.00 0.00 0.00 2.44
168 169 9.650371 GAATTTTAACATTTCCAAAAGCTTGAC 57.350 29.630 0.00 0.00 34.14 3.18
170 172 8.785329 TTTTAACATTTCCAAAAGCTTGACTT 57.215 26.923 0.00 0.00 41.70 3.01
302 305 9.612066 AAACACTTTTTGAATACATGGTCAATT 57.388 25.926 8.89 0.00 33.90 2.32
639 657 4.749310 AAGCTGGGCTGACGCGAG 62.749 66.667 15.93 0.36 39.62 5.03
657 695 2.830651 AGGAGTTCCCTACATCTCGT 57.169 50.000 0.00 0.00 45.48 4.18
658 696 2.657143 AGGAGTTCCCTACATCTCGTC 58.343 52.381 0.00 0.00 45.48 4.20
804 854 7.553044 ACCGTATATTTCTTCAGGAAAGGAAAG 59.447 37.037 0.00 0.00 45.61 2.62
828 878 7.565680 AGAAAACGGATGTATAGTTCCTTCAT 58.434 34.615 0.00 0.00 0.00 2.57
939 989 0.462789 ATAAACCCTCGCGTCCGAAT 59.537 50.000 5.77 0.00 43.87 3.34
964 1014 2.857889 CCCATTCAACCCCCACCA 59.142 61.111 0.00 0.00 0.00 4.17
1047 1112 3.477224 GAGGGAGCTCTACGCGCTG 62.477 68.421 14.64 1.02 41.45 5.18
1238 1303 0.462047 CGGTGGCTTAGGGTTGCTAG 60.462 60.000 0.00 0.00 0.00 3.42
1239 1304 0.909623 GGTGGCTTAGGGTTGCTAGA 59.090 55.000 0.00 0.00 0.00 2.43
1301 1366 0.757188 ACGATGTGGTGGGGCAAAAA 60.757 50.000 0.00 0.00 0.00 1.94
1340 1406 8.251750 TGATTGTCTTGATTTTAGGTCGTTAG 57.748 34.615 0.00 0.00 0.00 2.34
1440 1506 5.671329 GCTGTTGCTGTGCTATAGTTTGTAC 60.671 44.000 0.84 0.00 36.03 2.90
1441 1507 5.547465 TGTTGCTGTGCTATAGTTTGTACT 58.453 37.500 0.84 0.00 38.44 2.73
1442 1508 5.637810 TGTTGCTGTGCTATAGTTTGTACTC 59.362 40.000 0.84 0.00 35.78 2.59
1443 1509 4.755411 TGCTGTGCTATAGTTTGTACTCC 58.245 43.478 0.84 0.00 35.78 3.85
1444 1510 4.120589 GCTGTGCTATAGTTTGTACTCCC 58.879 47.826 0.84 0.00 35.78 4.30
1445 1511 4.382685 GCTGTGCTATAGTTTGTACTCCCA 60.383 45.833 0.84 0.00 35.78 4.37
1446 1512 5.080969 TGTGCTATAGTTTGTACTCCCAC 57.919 43.478 0.84 0.00 35.78 4.61
1447 1513 4.110482 GTGCTATAGTTTGTACTCCCACG 58.890 47.826 0.84 0.00 35.78 4.94
1448 1514 3.765511 TGCTATAGTTTGTACTCCCACGT 59.234 43.478 0.84 0.00 35.78 4.49
1449 1515 4.142315 TGCTATAGTTTGTACTCCCACGTC 60.142 45.833 0.84 0.00 35.78 4.34
1450 1516 4.097589 GCTATAGTTTGTACTCCCACGTCT 59.902 45.833 0.84 0.00 35.78 4.18
1451 1517 4.715527 ATAGTTTGTACTCCCACGTCTC 57.284 45.455 0.00 0.00 35.78 3.36
1452 1518 2.313317 AGTTTGTACTCCCACGTCTCA 58.687 47.619 0.00 0.00 0.00 3.27
1453 1519 2.897969 AGTTTGTACTCCCACGTCTCAT 59.102 45.455 0.00 0.00 0.00 2.90
1454 1520 4.084287 AGTTTGTACTCCCACGTCTCATA 58.916 43.478 0.00 0.00 0.00 2.15
1455 1521 4.525487 AGTTTGTACTCCCACGTCTCATAA 59.475 41.667 0.00 0.00 0.00 1.90
1456 1522 5.187186 AGTTTGTACTCCCACGTCTCATAAT 59.813 40.000 0.00 0.00 0.00 1.28
1457 1523 6.379133 AGTTTGTACTCCCACGTCTCATAATA 59.621 38.462 0.00 0.00 0.00 0.98
1458 1524 6.971726 TTGTACTCCCACGTCTCATAATAT 57.028 37.500 0.00 0.00 0.00 1.28
1459 1525 8.355169 GTTTGTACTCCCACGTCTCATAATATA 58.645 37.037 0.00 0.00 0.00 0.86
1460 1526 8.467963 TTGTACTCCCACGTCTCATAATATAA 57.532 34.615 0.00 0.00 0.00 0.98
1461 1527 8.107399 TGTACTCCCACGTCTCATAATATAAG 57.893 38.462 0.00 0.00 0.00 1.73
1462 1528 7.940688 TGTACTCCCACGTCTCATAATATAAGA 59.059 37.037 0.00 0.00 0.00 2.10
1463 1529 7.834881 ACTCCCACGTCTCATAATATAAGAA 57.165 36.000 0.00 0.00 0.00 2.52
1464 1530 7.659186 ACTCCCACGTCTCATAATATAAGAAC 58.341 38.462 0.00 0.00 0.00 3.01
1465 1531 6.675026 TCCCACGTCTCATAATATAAGAACG 58.325 40.000 0.00 0.00 0.00 3.95
1466 1532 6.263842 TCCCACGTCTCATAATATAAGAACGT 59.736 38.462 0.00 0.00 31.67 3.99
1467 1533 6.921857 CCCACGTCTCATAATATAAGAACGTT 59.078 38.462 0.00 0.00 30.24 3.99
1468 1534 7.437267 CCCACGTCTCATAATATAAGAACGTTT 59.563 37.037 0.46 0.00 30.24 3.60
1469 1535 8.814235 CCACGTCTCATAATATAAGAACGTTTT 58.186 33.333 0.46 0.00 30.24 2.43
1483 1549 7.876896 AAGAACGTTTTTAAGCTGTTTGAAA 57.123 28.000 0.46 0.00 0.00 2.69
1484 1550 7.876896 AGAACGTTTTTAAGCTGTTTGAAAA 57.123 28.000 0.46 3.45 33.43 2.29
1485 1551 8.300495 AGAACGTTTTTAAGCTGTTTGAAAAA 57.700 26.923 0.46 5.05 36.42 1.94
1486 1552 8.218441 AGAACGTTTTTAAGCTGTTTGAAAAAC 58.782 29.630 0.46 16.26 43.45 2.43
1490 1556 8.347196 GTTTTTAAGCTGTTTGAAAAACGTTC 57.653 30.769 0.00 0.00 40.15 3.95
1491 1557 7.876896 TTTTAAGCTGTTTGAAAAACGTTCT 57.123 28.000 0.00 0.00 0.00 3.01
1492 1558 7.876896 TTTAAGCTGTTTGAAAAACGTTCTT 57.123 28.000 0.00 0.00 0.00 2.52
1493 1559 8.967552 TTTAAGCTGTTTGAAAAACGTTCTTA 57.032 26.923 0.00 0.00 0.00 2.10
1494 1560 9.575783 TTTAAGCTGTTTGAAAAACGTTCTTAT 57.424 25.926 0.00 0.00 0.00 1.73
1497 1563 9.744468 AAGCTGTTTGAAAAACGTTCTTATATT 57.256 25.926 0.00 0.00 0.00 1.28
1505 1571 9.675464 TGAAAAACGTTCTTATATTATGGGACT 57.325 29.630 0.00 0.00 0.00 3.85
1506 1572 9.931210 GAAAAACGTTCTTATATTATGGGACTG 57.069 33.333 0.00 0.00 0.00 3.51
1507 1573 9.675464 AAAAACGTTCTTATATTATGGGACTGA 57.325 29.630 0.00 0.00 0.00 3.41
1508 1574 8.888579 AAACGTTCTTATATTATGGGACTGAG 57.111 34.615 0.00 0.00 0.00 3.35
1509 1575 6.994221 ACGTTCTTATATTATGGGACTGAGG 58.006 40.000 0.00 0.00 0.00 3.86
1510 1576 6.014499 ACGTTCTTATATTATGGGACTGAGGG 60.014 42.308 0.00 0.00 0.00 4.30
1585 1651 4.384056 GTCAATGTCTGTGGCTATATGCT 58.616 43.478 0.00 0.00 42.39 3.79
1588 1654 6.652481 GTCAATGTCTGTGGCTATATGCTAAT 59.348 38.462 0.00 0.00 42.39 1.73
1638 1704 8.899771 TCATCATGTATCAATCATATTGCATCC 58.100 33.333 0.00 0.00 0.00 3.51
1705 1771 0.675837 ATGCTGAGTCAACTGCGCAT 60.676 50.000 12.24 10.19 37.50 4.73
1731 1797 6.627287 GCCTGGGTGAATAAAACCTACATTTC 60.627 42.308 0.00 0.00 37.85 2.17
1803 1869 5.009610 ACAACCTGTCTTGCGTATTTTGATT 59.990 36.000 0.00 0.00 0.00 2.57
1808 1874 5.639757 TGTCTTGCGTATTTTGATTGGATG 58.360 37.500 0.00 0.00 0.00 3.51
1843 1939 2.334977 ACCTGTCATGGTGTTACCTCA 58.665 47.619 0.00 0.00 39.58 3.86
1863 1959 4.323417 TCATTCCGTAGAAACACAAGCAT 58.677 39.130 0.00 0.00 35.09 3.79
2098 2391 5.120674 TGAATAACTCATCTGCGACAGTTTG 59.879 40.000 6.72 6.52 32.61 2.93
2127 2420 5.078411 TGAATTCTTCTGACCTGACTAGC 57.922 43.478 7.05 0.00 0.00 3.42
2580 2873 8.855110 TGCCATCTTGTAAATTCTTTAACTTCA 58.145 29.630 0.00 0.00 0.00 3.02
3340 3857 6.471233 TCATTGAGAGACGGATCTGTTAAT 57.529 37.500 8.99 0.00 35.53 1.40
3525 4042 7.697691 ACCTAGCTATTCGAAAAACATGATTG 58.302 34.615 0.00 0.00 0.00 2.67
3556 4073 5.049828 TGCACGATCTATAATGTCAACCAG 58.950 41.667 0.00 0.00 0.00 4.00
3710 4230 9.765795 ACTTTTAGACCATATACAGCTAATGTC 57.234 33.333 0.00 0.00 42.70 3.06
3723 4243 6.636705 ACAGCTAATGTCCGACAGTAAATAA 58.363 36.000 9.77 0.00 37.75 1.40
3917 4451 7.447594 AGAAATTTCAAGTTCCATGCAAATCT 58.552 30.769 19.99 0.00 33.78 2.40
4009 4544 9.678260 TTATCTTTATATAGTACTCCCTCCGTC 57.322 37.037 0.00 0.00 0.00 4.79
4010 4545 6.479884 TCTTTATATAGTACTCCCTCCGTCC 58.520 44.000 0.00 0.00 0.00 4.79
4011 4546 3.735720 ATATAGTACTCCCTCCGTCCC 57.264 52.381 0.00 0.00 0.00 4.46
4012 4547 1.229131 ATAGTACTCCCTCCGTCCCA 58.771 55.000 0.00 0.00 0.00 4.37
4013 4548 1.002069 TAGTACTCCCTCCGTCCCAA 58.998 55.000 0.00 0.00 0.00 4.12
4014 4549 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
4015 4550 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
4016 4551 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
4017 4552 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
4018 4553 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
4019 4554 2.850568 ACTCCCTCCGTCCCAAAATAAT 59.149 45.455 0.00 0.00 0.00 1.28
4020 4555 3.268595 ACTCCCTCCGTCCCAAAATAATT 59.731 43.478 0.00 0.00 0.00 1.40
4021 4556 3.626930 TCCCTCCGTCCCAAAATAATTG 58.373 45.455 0.00 0.00 0.00 2.32
4022 4557 3.010808 TCCCTCCGTCCCAAAATAATTGT 59.989 43.478 0.00 0.00 0.00 2.71
4023 4558 3.380320 CCCTCCGTCCCAAAATAATTGTC 59.620 47.826 0.00 0.00 0.00 3.18
4024 4559 4.270008 CCTCCGTCCCAAAATAATTGTCT 58.730 43.478 0.00 0.00 0.00 3.41
4025 4560 4.335594 CCTCCGTCCCAAAATAATTGTCTC 59.664 45.833 0.00 0.00 0.00 3.36
4026 4561 4.912586 TCCGTCCCAAAATAATTGTCTCA 58.087 39.130 0.00 0.00 0.00 3.27
4027 4562 5.317808 TCCGTCCCAAAATAATTGTCTCAA 58.682 37.500 0.00 0.00 0.00 3.02
4028 4563 5.414454 TCCGTCCCAAAATAATTGTCTCAAG 59.586 40.000 0.00 0.00 0.00 3.02
4029 4564 5.183140 CCGTCCCAAAATAATTGTCTCAAGT 59.817 40.000 0.00 0.00 0.00 3.16
4030 4565 6.294508 CCGTCCCAAAATAATTGTCTCAAGTT 60.295 38.462 0.00 0.00 0.00 2.66
4031 4566 7.145323 CGTCCCAAAATAATTGTCTCAAGTTT 58.855 34.615 0.00 0.00 0.00 2.66
4032 4567 8.293867 CGTCCCAAAATAATTGTCTCAAGTTTA 58.706 33.333 0.00 0.00 0.00 2.01
4033 4568 9.626045 GTCCCAAAATAATTGTCTCAAGTTTAG 57.374 33.333 0.00 0.00 0.00 1.85
4034 4569 9.362151 TCCCAAAATAATTGTCTCAAGTTTAGT 57.638 29.630 0.00 0.00 0.00 2.24
4044 4579 8.556213 TTGTCTCAAGTTTAGTACAACTTTGT 57.444 30.769 8.25 0.00 43.17 2.83
4045 4580 9.656040 TTGTCTCAAGTTTAGTACAACTTTGTA 57.344 29.630 8.25 0.00 43.17 2.41
4059 4594 7.286215 ACAACTTTGTACTAGAGCTAGTTCA 57.714 36.000 14.72 12.93 45.02 3.18
4060 4595 7.723324 ACAACTTTGTACTAGAGCTAGTTCAA 58.277 34.615 19.33 19.33 45.33 2.69
4067 4602 8.988064 TGTACTAGAGCTAGTTCAAAATTGAG 57.012 34.615 14.72 0.00 43.35 3.02
4068 4603 8.803235 TGTACTAGAGCTAGTTCAAAATTGAGA 58.197 33.333 14.72 0.00 43.35 3.27
4069 4604 9.078753 GTACTAGAGCTAGTTCAAAATTGAGAC 57.921 37.037 14.72 0.42 43.35 3.36
4070 4605 7.671302 ACTAGAGCTAGTTCAAAATTGAGACA 58.329 34.615 9.43 0.00 43.35 3.41
4071 4606 6.793492 AGAGCTAGTTCAAAATTGAGACAC 57.207 37.500 9.43 0.00 38.61 3.67
4072 4607 6.529220 AGAGCTAGTTCAAAATTGAGACACT 58.471 36.000 9.43 4.82 38.61 3.55
4073 4608 6.995091 AGAGCTAGTTCAAAATTGAGACACTT 59.005 34.615 9.43 0.00 38.61 3.16
4074 4609 8.150945 AGAGCTAGTTCAAAATTGAGACACTTA 58.849 33.333 9.43 0.00 38.61 2.24
4075 4610 8.854614 AGCTAGTTCAAAATTGAGACACTTAT 57.145 30.769 4.76 0.00 38.61 1.73
4076 4611 9.289782 AGCTAGTTCAAAATTGAGACACTTATT 57.710 29.630 4.76 0.00 38.61 1.40
4077 4612 9.899226 GCTAGTTCAAAATTGAGACACTTATTT 57.101 29.630 4.76 0.00 38.61 1.40
4080 4615 9.533253 AGTTCAAAATTGAGACACTTATTTTGG 57.467 29.630 19.77 6.28 43.24 3.28
4081 4616 8.764287 GTTCAAAATTGAGACACTTATTTTGGG 58.236 33.333 19.77 7.67 43.24 4.12
4082 4617 8.243961 TCAAAATTGAGACACTTATTTTGGGA 57.756 30.769 19.77 9.30 43.24 4.37
4083 4618 8.141268 TCAAAATTGAGACACTTATTTTGGGAC 58.859 33.333 19.77 0.00 43.24 4.46
4084 4619 5.880054 ATTGAGACACTTATTTTGGGACG 57.120 39.130 0.00 0.00 0.00 4.79
4085 4620 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
4086 4621 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
4087 4622 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
4088 4623 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
4089 4624 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
4114 4649 7.600752 GGAGTATATGCTTGTGGTTATCTTCTC 59.399 40.741 0.00 0.00 0.00 2.87
4150 4685 5.695424 AACTCCCACTAACCTATTTCTCC 57.305 43.478 0.00 0.00 0.00 3.71
4186 4721 1.200716 CCACCTCATCACATGCAACAC 59.799 52.381 0.00 0.00 0.00 3.32
4255 4790 2.292569 GCCACCTCAACATGCATGATAG 59.707 50.000 32.75 22.75 0.00 2.08
4268 4803 9.797642 AACATGCATGATAGTTTCCATTCTATA 57.202 29.630 32.75 0.00 0.00 1.31
4437 4978 4.339814 GGGGTTGACTGTTCATGTTGTTTA 59.660 41.667 0.00 0.00 0.00 2.01
4901 5528 4.100189 CCTTTGTGGTAAAATTGTGGACCA 59.900 41.667 0.00 0.00 39.66 4.02
4982 5609 8.354426 TGAAGGACAATATGATTTGCATATGTG 58.646 33.333 4.29 0.00 46.84 3.21
5013 5640 4.271696 TGAATTGGTCTGACTGTACTGG 57.728 45.455 7.85 0.00 0.00 4.00
5056 5683 6.783892 ATTTTTCATTTCACCATTTCACCG 57.216 33.333 0.00 0.00 0.00 4.94
5387 6031 5.686753 AGACGGATATCAGAGTTCAGTACT 58.313 41.667 10.01 0.00 40.71 2.73
5494 6150 7.524532 GCTTCTTTATTTCTCCTTTTGCCTCTT 60.525 37.037 0.00 0.00 0.00 2.85
5592 6248 1.784525 AGAGCGTTTGACACTAGTGC 58.215 50.000 22.90 15.35 0.00 4.40
5768 6426 3.301274 GCAGTTGATACTACTCCCTCCT 58.699 50.000 0.00 0.00 31.96 3.69
6255 7259 6.781138 TCCGCATGTAATTTGTACTGAAATC 58.219 36.000 0.00 0.00 0.00 2.17
6285 7289 4.895961 AGGCTTATATTTAGGAACGGAGC 58.104 43.478 0.00 0.00 0.00 4.70
6320 7325 5.007430 CAGTCTCATTTACTTGCAGCTATGG 59.993 44.000 0.00 0.00 0.00 2.74
6321 7326 5.104776 AGTCTCATTTACTTGCAGCTATGGA 60.105 40.000 0.00 0.00 0.00 3.41
6322 7327 5.762218 GTCTCATTTACTTGCAGCTATGGAT 59.238 40.000 0.00 0.00 0.00 3.41
6324 7329 5.065914 TCATTTACTTGCAGCTATGGATCC 58.934 41.667 4.20 4.20 0.00 3.36
6325 7330 4.502105 TTTACTTGCAGCTATGGATCCA 57.498 40.909 18.88 18.88 0.00 3.41
6326 7331 4.712051 TTACTTGCAGCTATGGATCCAT 57.288 40.909 29.66 29.66 40.19 3.41
6327 7332 2.860009 ACTTGCAGCTATGGATCCATG 58.140 47.619 33.41 23.63 37.82 3.66
6328 7333 2.174210 ACTTGCAGCTATGGATCCATGT 59.826 45.455 33.41 18.73 37.82 3.21
6329 7334 3.392285 ACTTGCAGCTATGGATCCATGTA 59.608 43.478 33.41 17.41 37.82 2.29
6542 7547 4.388485 TGTGTGAACTGATAGTTGCATGT 58.612 39.130 0.00 0.00 38.80 3.21
6580 7585 3.658757 TTTGTTACCTTTGCTGCATCC 57.341 42.857 1.84 0.00 0.00 3.51
6792 7797 7.691877 GCAAATTGGTTAACTTTTGTGTTTGAG 59.308 33.333 20.14 4.35 32.88 3.02
6806 7811 9.814899 TTTTGTGTTTGAGTCATCACATATTTT 57.185 25.926 23.03 0.00 39.86 1.82
6918 8013 4.872691 GCAAGATGCATACTTGTGACTAGT 59.127 41.667 25.92 4.90 44.26 2.57
6970 8065 5.558818 AGTATGTAGTATGTACTCCCTCCG 58.441 45.833 0.00 0.00 37.73 4.63
6971 8066 3.939740 TGTAGTATGTACTCCCTCCGT 57.060 47.619 0.00 0.00 37.73 4.69
6972 8067 3.813443 TGTAGTATGTACTCCCTCCGTC 58.187 50.000 0.00 0.00 37.73 4.79
6973 8068 3.457380 TGTAGTATGTACTCCCTCCGTCT 59.543 47.826 0.00 0.00 37.73 4.18
6974 8069 3.211718 AGTATGTACTCCCTCCGTCTC 57.788 52.381 0.00 0.00 0.00 3.36
6975 8070 2.508716 AGTATGTACTCCCTCCGTCTCA 59.491 50.000 0.00 0.00 0.00 3.27
6976 8071 2.526888 ATGTACTCCCTCCGTCTCAA 57.473 50.000 0.00 0.00 0.00 3.02
6977 8072 2.297698 TGTACTCCCTCCGTCTCAAA 57.702 50.000 0.00 0.00 0.00 2.69
6978 8073 2.600790 TGTACTCCCTCCGTCTCAAAA 58.399 47.619 0.00 0.00 0.00 2.44
6979 8074 3.170717 TGTACTCCCTCCGTCTCAAAAT 58.829 45.455 0.00 0.00 0.00 1.82
6980 8075 4.346730 TGTACTCCCTCCGTCTCAAAATA 58.653 43.478 0.00 0.00 0.00 1.40
6981 8076 4.773674 TGTACTCCCTCCGTCTCAAAATAA 59.226 41.667 0.00 0.00 0.00 1.40
6982 8077 4.903045 ACTCCCTCCGTCTCAAAATAAA 57.097 40.909 0.00 0.00 0.00 1.40
6983 8078 5.437191 ACTCCCTCCGTCTCAAAATAAAT 57.563 39.130 0.00 0.00 0.00 1.40
6984 8079 5.186198 ACTCCCTCCGTCTCAAAATAAATG 58.814 41.667 0.00 0.00 0.00 2.32
6985 8080 5.174037 TCCCTCCGTCTCAAAATAAATGT 57.826 39.130 0.00 0.00 0.00 2.71
6986 8081 5.183228 TCCCTCCGTCTCAAAATAAATGTC 58.817 41.667 0.00 0.00 0.00 3.06
6987 8082 5.045869 TCCCTCCGTCTCAAAATAAATGTCT 60.046 40.000 0.00 0.00 0.00 3.41
6988 8083 5.648092 CCCTCCGTCTCAAAATAAATGTCTT 59.352 40.000 0.00 0.00 0.00 3.01
6989 8084 6.403636 CCCTCCGTCTCAAAATAAATGTCTTG 60.404 42.308 0.00 0.00 0.00 3.02
6990 8085 6.371548 CCTCCGTCTCAAAATAAATGTCTTGA 59.628 38.462 0.00 0.00 0.00 3.02
6991 8086 7.364522 TCCGTCTCAAAATAAATGTCTTGAG 57.635 36.000 4.63 4.63 43.97 3.02
6992 8087 6.934645 TCCGTCTCAAAATAAATGTCTTGAGT 59.065 34.615 9.72 0.00 43.38 3.41
6993 8088 7.444183 TCCGTCTCAAAATAAATGTCTTGAGTT 59.556 33.333 9.72 0.00 43.38 3.01
6994 8089 8.076178 CCGTCTCAAAATAAATGTCTTGAGTTT 58.924 33.333 9.72 0.00 43.38 2.66
7032 8127 7.148355 ACTAGAGCTAGTACAAAGTTGAGAC 57.852 40.000 8.35 0.00 43.98 3.36
7033 8128 6.715718 ACTAGAGCTAGTACAAAGTTGAGACA 59.284 38.462 8.35 0.00 43.98 3.41
7034 8129 5.774630 AGAGCTAGTACAAAGTTGAGACAC 58.225 41.667 0.00 0.00 0.00 3.67
7035 8130 5.536916 AGAGCTAGTACAAAGTTGAGACACT 59.463 40.000 0.00 0.00 0.00 3.55
7036 8131 6.041069 AGAGCTAGTACAAAGTTGAGACACTT 59.959 38.462 0.00 0.00 38.74 3.16
7037 8132 7.230913 AGAGCTAGTACAAAGTTGAGACACTTA 59.769 37.037 0.00 0.00 35.87 2.24
7038 8133 7.897864 AGCTAGTACAAAGTTGAGACACTTAT 58.102 34.615 0.00 0.00 35.87 1.73
7039 8134 8.368668 AGCTAGTACAAAGTTGAGACACTTATT 58.631 33.333 0.00 0.00 35.87 1.40
7040 8135 8.989980 GCTAGTACAAAGTTGAGACACTTATTT 58.010 33.333 0.00 0.00 35.87 1.40
7043 8138 8.621286 AGTACAAAGTTGAGACACTTATTTTGG 58.379 33.333 0.00 0.00 35.87 3.28
7044 8139 6.805713 ACAAAGTTGAGACACTTATTTTGGG 58.194 36.000 0.00 0.00 35.87 4.12
7045 8140 6.605594 ACAAAGTTGAGACACTTATTTTGGGA 59.394 34.615 0.00 0.00 35.87 4.37
7046 8141 6.635030 AAGTTGAGACACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
7047 8142 4.755123 AGTTGAGACACTTATTTTGGGACG 59.245 41.667 0.00 0.00 0.00 4.79
7048 8143 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
7049 8144 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
7050 8145 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
7051 8146 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
7052 8147 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
7053 8148 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
7054 8149 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
7055 8150 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
7056 8151 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
7057 8152 1.961133 TTTTGGGACGGAGGGAGTAT 58.039 50.000 0.00 0.00 0.00 2.12
7228 8327 9.524106 CGTATTTTCCTGTGTCATGTATACTTA 57.476 33.333 4.17 0.00 0.00 2.24
7240 8339 8.129211 TGTCATGTATACTTACTGAAGACATCG 58.871 37.037 4.17 0.00 36.45 3.84
7303 8402 2.887152 GTCACAAAGATTGCTGGAACCT 59.113 45.455 0.00 0.00 0.00 3.50
7346 8445 0.901124 ACAGCAGGAGAGTGATGGTC 59.099 55.000 0.00 0.00 38.19 4.02
7423 8522 9.979578 AGTCAATTGAGTGAGATAGATGATAAC 57.020 33.333 15.07 0.00 0.00 1.89
7702 8856 8.410030 TCCATGCATTCGAAATTTATCTTTTG 57.590 30.769 0.00 0.00 0.00 2.44
7703 8857 7.010367 TCCATGCATTCGAAATTTATCTTTTGC 59.990 33.333 0.00 3.91 0.00 3.68
7704 8858 7.201539 CCATGCATTCGAAATTTATCTTTTGCA 60.202 33.333 15.50 15.50 40.23 4.08
7705 8859 7.649370 TGCATTCGAAATTTATCTTTTGCAA 57.351 28.000 11.95 0.00 33.85 4.08
7706 8860 8.081208 TGCATTCGAAATTTATCTTTTGCAAA 57.919 26.923 8.05 8.05 33.85 3.68
7840 9007 1.480137 CTCCTGGGTCTGTTAGAGCAG 59.520 57.143 9.85 5.73 44.10 4.24
7841 9008 1.203187 TCCTGGGTCTGTTAGAGCAGT 60.203 52.381 9.85 0.00 44.10 4.40
7842 9009 2.042569 TCCTGGGTCTGTTAGAGCAGTA 59.957 50.000 9.85 0.00 44.10 2.74
7843 9010 2.832129 CCTGGGTCTGTTAGAGCAGTAA 59.168 50.000 9.85 0.00 44.10 2.24
7844 9011 3.452627 CCTGGGTCTGTTAGAGCAGTAAT 59.547 47.826 9.85 0.00 44.10 1.89
7845 9012 4.080863 CCTGGGTCTGTTAGAGCAGTAATT 60.081 45.833 9.85 0.00 44.10 1.40
7846 9013 5.128827 CCTGGGTCTGTTAGAGCAGTAATTA 59.871 44.000 9.85 0.00 44.10 1.40
7847 9014 6.351881 CCTGGGTCTGTTAGAGCAGTAATTAA 60.352 42.308 9.85 0.00 44.10 1.40
7848 9015 7.011499 TGGGTCTGTTAGAGCAGTAATTAAA 57.989 36.000 9.85 0.00 44.10 1.52
7849 9016 7.630082 TGGGTCTGTTAGAGCAGTAATTAAAT 58.370 34.615 9.85 0.00 44.10 1.40
7850 9017 8.107095 TGGGTCTGTTAGAGCAGTAATTAAATT 58.893 33.333 9.85 0.00 44.10 1.82
7851 9018 9.609346 GGGTCTGTTAGAGCAGTAATTAAATTA 57.391 33.333 9.85 0.00 44.10 1.40
7889 9056 8.760980 TGGAGGTTGATAGTTTATTTATTGGG 57.239 34.615 0.00 0.00 0.00 4.12
7890 9057 7.782644 TGGAGGTTGATAGTTTATTTATTGGGG 59.217 37.037 0.00 0.00 0.00 4.96
7891 9058 8.002459 GGAGGTTGATAGTTTATTTATTGGGGA 58.998 37.037 0.00 0.00 0.00 4.81
7892 9059 9.416284 GAGGTTGATAGTTTATTTATTGGGGAA 57.584 33.333 0.00 0.00 0.00 3.97
7893 9060 9.421399 AGGTTGATAGTTTATTTATTGGGGAAG 57.579 33.333 0.00 0.00 0.00 3.46
7894 9061 9.416284 GGTTGATAGTTTATTTATTGGGGAAGA 57.584 33.333 0.00 0.00 0.00 2.87
7897 9064 9.847224 TGATAGTTTATTTATTGGGGAAGAGTC 57.153 33.333 0.00 0.00 0.00 3.36
7898 9065 9.847224 GATAGTTTATTTATTGGGGAAGAGTCA 57.153 33.333 0.00 0.00 0.00 3.41
7901 9068 9.190317 AGTTTATTTATTGGGGAAGAGTCAATC 57.810 33.333 0.00 0.00 33.72 2.67
7902 9069 8.414003 GTTTATTTATTGGGGAAGAGTCAATCC 58.586 37.037 6.47 6.47 33.72 3.01
7903 9070 5.796502 TTTATTGGGGAAGAGTCAATCCT 57.203 39.130 13.02 0.00 35.95 3.24
7904 9071 5.796502 TTATTGGGGAAGAGTCAATCCTT 57.203 39.130 13.02 0.00 35.95 3.36
7905 9072 3.721087 TTGGGGAAGAGTCAATCCTTC 57.279 47.619 13.02 0.00 38.37 3.46
7906 9073 2.921221 TGGGGAAGAGTCAATCCTTCT 58.079 47.619 13.02 0.00 38.92 2.85
7907 9074 2.840651 TGGGGAAGAGTCAATCCTTCTC 59.159 50.000 13.02 0.00 38.76 2.87
7908 9075 3.111484 GGGGAAGAGTCAATCCTTCTCT 58.889 50.000 13.02 0.00 39.29 3.10
7909 9076 3.521531 GGGGAAGAGTCAATCCTTCTCTT 59.478 47.826 13.02 6.40 46.72 2.85
7914 9081 5.659440 AGAGTCAATCCTTCTCTTCTCAC 57.341 43.478 0.00 0.00 35.37 3.51
7915 9082 5.332743 AGAGTCAATCCTTCTCTTCTCACT 58.667 41.667 0.00 0.00 35.37 3.41
7916 9083 5.779771 AGAGTCAATCCTTCTCTTCTCACTT 59.220 40.000 0.00 0.00 35.37 3.16
7917 9084 6.036577 AGTCAATCCTTCTCTTCTCACTTC 57.963 41.667 0.00 0.00 0.00 3.01
7918 9085 5.541868 AGTCAATCCTTCTCTTCTCACTTCA 59.458 40.000 0.00 0.00 0.00 3.02
7919 9086 6.042552 AGTCAATCCTTCTCTTCTCACTTCAA 59.957 38.462 0.00 0.00 0.00 2.69
7920 9087 6.368516 GTCAATCCTTCTCTTCTCACTTCAAG 59.631 42.308 0.00 0.00 0.00 3.02
7921 9088 6.268617 TCAATCCTTCTCTTCTCACTTCAAGA 59.731 38.462 0.00 0.00 0.00 3.02
7922 9089 6.872585 ATCCTTCTCTTCTCACTTCAAGAT 57.127 37.500 0.00 0.00 0.00 2.40
7923 9090 6.678568 TCCTTCTCTTCTCACTTCAAGATT 57.321 37.500 0.00 0.00 0.00 2.40
7924 9091 6.462500 TCCTTCTCTTCTCACTTCAAGATTG 58.538 40.000 0.00 0.00 0.00 2.67
7925 9092 6.268617 TCCTTCTCTTCTCACTTCAAGATTGA 59.731 38.462 0.00 0.00 34.92 2.57
7926 9093 7.038445 TCCTTCTCTTCTCACTTCAAGATTGAT 60.038 37.037 0.00 0.00 37.00 2.57
7927 9094 7.278424 CCTTCTCTTCTCACTTCAAGATTGATC 59.722 40.741 0.00 0.00 37.00 2.92
7928 9095 7.237209 TCTCTTCTCACTTCAAGATTGATCA 57.763 36.000 0.00 0.00 37.00 2.92
7929 9096 7.849160 TCTCTTCTCACTTCAAGATTGATCAT 58.151 34.615 0.00 0.00 37.00 2.45
7930 9097 7.980662 TCTCTTCTCACTTCAAGATTGATCATC 59.019 37.037 0.00 0.00 37.00 2.92
7931 9098 7.849160 TCTTCTCACTTCAAGATTGATCATCT 58.151 34.615 0.00 0.00 45.03 2.90
7932 9099 7.980662 TCTTCTCACTTCAAGATTGATCATCTC 59.019 37.037 0.00 0.00 41.93 2.75
7933 9100 6.271566 TCTCACTTCAAGATTGATCATCTCG 58.728 40.000 0.00 0.00 41.93 4.04
7934 9101 6.096001 TCTCACTTCAAGATTGATCATCTCGA 59.904 38.462 0.00 0.00 41.93 4.04
7935 9102 6.271566 TCACTTCAAGATTGATCATCTCGAG 58.728 40.000 5.93 5.93 41.93 4.04
7936 9103 5.049167 ACTTCAAGATTGATCATCTCGAGC 58.951 41.667 7.81 0.00 41.93 5.03
7937 9104 3.987547 TCAAGATTGATCATCTCGAGCC 58.012 45.455 7.81 0.00 41.93 4.70
7938 9105 3.385755 TCAAGATTGATCATCTCGAGCCA 59.614 43.478 7.81 0.00 41.93 4.75
7939 9106 4.040095 TCAAGATTGATCATCTCGAGCCAT 59.960 41.667 7.81 0.00 41.93 4.40
7940 9107 4.191033 AGATTGATCATCTCGAGCCATC 57.809 45.455 7.81 9.10 37.79 3.51
7941 9108 3.833650 AGATTGATCATCTCGAGCCATCT 59.166 43.478 7.81 2.83 37.79 2.90
7942 9109 3.382048 TTGATCATCTCGAGCCATCTG 57.618 47.619 7.81 0.24 0.00 2.90
7943 9110 2.314246 TGATCATCTCGAGCCATCTGT 58.686 47.619 7.81 0.00 0.00 3.41
7944 9111 2.697229 TGATCATCTCGAGCCATCTGTT 59.303 45.455 7.81 0.00 0.00 3.16
7945 9112 2.591571 TCATCTCGAGCCATCTGTTG 57.408 50.000 7.81 0.00 0.00 3.33
7946 9113 2.102578 TCATCTCGAGCCATCTGTTGA 58.897 47.619 7.81 0.00 0.00 3.18
7947 9114 2.100418 TCATCTCGAGCCATCTGTTGAG 59.900 50.000 7.81 0.00 0.00 3.02
7948 9115 0.820226 TCTCGAGCCATCTGTTGAGG 59.180 55.000 7.81 0.00 0.00 3.86
7949 9116 0.179089 CTCGAGCCATCTGTTGAGGG 60.179 60.000 0.00 0.00 46.10 4.30
7950 9117 0.904865 TCGAGCCATCTGTTGAGGGT 60.905 55.000 0.00 0.00 45.21 4.34
7951 9118 0.742281 CGAGCCATCTGTTGAGGGTG 60.742 60.000 0.00 0.00 45.21 4.61
7952 9119 0.393537 GAGCCATCTGTTGAGGGTGG 60.394 60.000 0.00 0.00 45.21 4.61
7953 9120 0.842030 AGCCATCTGTTGAGGGTGGA 60.842 55.000 0.00 0.00 45.21 4.02
7954 9121 0.038166 GCCATCTGTTGAGGGTGGAA 59.962 55.000 0.00 0.00 45.21 3.53
7955 9122 1.547675 GCCATCTGTTGAGGGTGGAAA 60.548 52.381 0.00 0.00 45.21 3.13
7956 9123 2.885554 GCCATCTGTTGAGGGTGGAAAT 60.886 50.000 0.00 0.00 45.21 2.17
7957 9124 3.434309 CCATCTGTTGAGGGTGGAAATT 58.566 45.455 0.00 0.00 39.15 1.82
7958 9125 3.834231 CCATCTGTTGAGGGTGGAAATTT 59.166 43.478 0.00 0.00 39.15 1.82
7959 9126 5.016173 CCATCTGTTGAGGGTGGAAATTTA 58.984 41.667 0.00 0.00 39.15 1.40
7960 9127 5.480073 CCATCTGTTGAGGGTGGAAATTTAA 59.520 40.000 0.00 0.00 39.15 1.52
7961 9128 6.350445 CCATCTGTTGAGGGTGGAAATTTAAG 60.350 42.308 0.00 0.00 39.15 1.85
7962 9129 5.947663 TCTGTTGAGGGTGGAAATTTAAGA 58.052 37.500 0.00 0.00 0.00 2.10
7963 9130 6.369629 TCTGTTGAGGGTGGAAATTTAAGAA 58.630 36.000 0.00 0.00 0.00 2.52
7964 9131 7.010160 TCTGTTGAGGGTGGAAATTTAAGAAT 58.990 34.615 0.00 0.00 0.00 2.40
7965 9132 8.167392 TCTGTTGAGGGTGGAAATTTAAGAATA 58.833 33.333 0.00 0.00 0.00 1.75
7966 9133 8.713708 TGTTGAGGGTGGAAATTTAAGAATAA 57.286 30.769 0.00 0.00 0.00 1.40
7967 9134 9.148879 TGTTGAGGGTGGAAATTTAAGAATAAA 57.851 29.630 0.00 0.00 35.57 1.40
7995 9162 7.730067 GTTTTAAGCAAACTTGTTTAGTCGT 57.270 32.000 0.00 0.00 41.58 4.34
8018 9185 6.238320 CGTCTACTGTACTAGGTCGCTTATTT 60.238 42.308 0.00 0.00 0.00 1.40
8065 9491 8.577296 TGAAGGTATAGAACAATCGAGGAATAG 58.423 37.037 0.00 0.00 0.00 1.73
8071 9497 3.266510 ACAATCGAGGAATAGCTTGCA 57.733 42.857 0.00 0.00 0.00 4.08
8283 9747 2.118076 CCTTTCAAGGCCCCTGCA 59.882 61.111 0.00 0.00 39.76 4.41
8313 9777 3.005684 TGGTTCAGTTTAGCCAGCAATTG 59.994 43.478 0.00 0.00 0.00 2.32
8384 9848 2.785679 GGCATCAGTTTTGTATCGCAC 58.214 47.619 0.00 0.00 0.00 5.34
8438 9905 7.593644 GGTCAACTTAAATCTTTAATTGCACGT 59.406 33.333 0.00 0.00 32.69 4.49
8440 9907 8.132362 TCAACTTAAATCTTTAATTGCACGTGT 58.868 29.630 18.38 0.00 32.69 4.49
8515 9982 3.221771 AGTGCATGTTACTTTTGCTCCA 58.778 40.909 0.00 0.00 37.28 3.86
8582 10049 3.918591 GTGATGCATTGCACTCTTCTTTG 59.081 43.478 14.66 0.00 43.04 2.77
8710 10179 1.546548 GGCTTCTATGATCCTTGCCCC 60.547 57.143 0.00 0.00 33.45 5.80
8716 10185 1.700042 ATGATCCTTGCCCCGGAGAC 61.700 60.000 0.73 0.00 33.29 3.36
8743 10212 2.974536 GCTACTGCTCGTCGAATACATC 59.025 50.000 0.00 0.00 36.03 3.06
8823 10292 1.462616 TGCATGTCTGTATTGTGCCC 58.537 50.000 0.00 0.00 35.03 5.36
8825 10294 1.672881 GCATGTCTGTATTGTGCCCTC 59.327 52.381 0.00 0.00 0.00 4.30
8860 10330 8.389779 ACAAAATTGTTGAACTTTTCCTTTGT 57.610 26.923 0.00 2.15 38.47 2.83
8931 10401 3.920231 TCATGAGATTTGACCTGAGGG 57.080 47.619 2.38 0.00 38.88 4.30
8933 10403 3.453717 TCATGAGATTTGACCTGAGGGAG 59.546 47.826 2.38 0.00 36.25 4.30
9002 10472 6.203530 CCATCATAGTTTTCGTGTGCTGATAT 59.796 38.462 0.00 0.00 0.00 1.63
9044 10514 2.439507 TCATTTCTCTATGTGAGCCCCC 59.560 50.000 0.00 0.00 42.38 5.40
9102 10572 5.020132 CCACCTAGATGAGTAATAGAGGGG 58.980 50.000 0.00 0.00 0.00 4.79
9106 10576 6.047359 ACCTAGATGAGTAATAGAGGGGATGT 59.953 42.308 0.00 0.00 0.00 3.06
9169 10639 2.310538 CCTTGGAAGGTTCAGCTTTGT 58.689 47.619 0.00 0.00 41.41 2.83
9170 10640 2.695147 CCTTGGAAGGTTCAGCTTTGTT 59.305 45.455 0.00 0.00 41.41 2.83
9171 10641 3.132824 CCTTGGAAGGTTCAGCTTTGTTT 59.867 43.478 0.00 0.00 41.41 2.83
9172 10642 3.799281 TGGAAGGTTCAGCTTTGTTTG 57.201 42.857 0.00 0.00 0.00 2.93
9173 10643 2.430332 TGGAAGGTTCAGCTTTGTTTGG 59.570 45.455 0.00 0.00 0.00 3.28
9174 10644 2.430694 GGAAGGTTCAGCTTTGTTTGGT 59.569 45.455 0.00 0.00 0.00 3.67
9175 10645 3.118775 GGAAGGTTCAGCTTTGTTTGGTT 60.119 43.478 0.00 0.00 0.00 3.67
9176 10646 3.525268 AGGTTCAGCTTTGTTTGGTTG 57.475 42.857 0.00 0.00 0.00 3.77
9177 10647 2.831526 AGGTTCAGCTTTGTTTGGTTGT 59.168 40.909 0.00 0.00 0.00 3.32
9178 10648 3.260632 AGGTTCAGCTTTGTTTGGTTGTT 59.739 39.130 0.00 0.00 0.00 2.83
9179 10649 3.370672 GGTTCAGCTTTGTTTGGTTGTTG 59.629 43.478 0.00 0.00 0.00 3.33
9180 10650 4.241681 GTTCAGCTTTGTTTGGTTGTTGA 58.758 39.130 0.00 0.00 0.00 3.18
9181 10651 4.734398 TCAGCTTTGTTTGGTTGTTGAT 57.266 36.364 0.00 0.00 0.00 2.57
9182 10652 5.083533 TCAGCTTTGTTTGGTTGTTGATT 57.916 34.783 0.00 0.00 0.00 2.57
9183 10653 5.486526 TCAGCTTTGTTTGGTTGTTGATTT 58.513 33.333 0.00 0.00 0.00 2.17
9184 10654 5.936956 TCAGCTTTGTTTGGTTGTTGATTTT 59.063 32.000 0.00 0.00 0.00 1.82
9185 10655 6.429385 TCAGCTTTGTTTGGTTGTTGATTTTT 59.571 30.769 0.00 0.00 0.00 1.94
9186 10656 6.523893 CAGCTTTGTTTGGTTGTTGATTTTTG 59.476 34.615 0.00 0.00 0.00 2.44
9187 10657 5.799435 GCTTTGTTTGGTTGTTGATTTTTGG 59.201 36.000 0.00 0.00 0.00 3.28
9188 10658 6.569418 GCTTTGTTTGGTTGTTGATTTTTGGT 60.569 34.615 0.00 0.00 0.00 3.67
9189 10659 6.884280 TTGTTTGGTTGTTGATTTTTGGTT 57.116 29.167 0.00 0.00 0.00 3.67
9190 10660 6.246420 TGTTTGGTTGTTGATTTTTGGTTG 57.754 33.333 0.00 0.00 0.00 3.77
9191 10661 5.182001 TGTTTGGTTGTTGATTTTTGGTTGG 59.818 36.000 0.00 0.00 0.00 3.77
9192 10662 4.826274 TGGTTGTTGATTTTTGGTTGGA 57.174 36.364 0.00 0.00 0.00 3.53
9193 10663 5.165961 TGGTTGTTGATTTTTGGTTGGAA 57.834 34.783 0.00 0.00 0.00 3.53
9194 10664 5.181748 TGGTTGTTGATTTTTGGTTGGAAG 58.818 37.500 0.00 0.00 0.00 3.46
9195 10665 4.035091 GGTTGTTGATTTTTGGTTGGAAGC 59.965 41.667 0.00 0.00 0.00 3.86
9196 10666 4.478206 TGTTGATTTTTGGTTGGAAGCA 57.522 36.364 0.00 0.00 34.10 3.91
9197 10667 5.033589 TGTTGATTTTTGGTTGGAAGCAT 57.966 34.783 0.00 0.00 36.16 3.79
9198 10668 6.166984 TGTTGATTTTTGGTTGGAAGCATA 57.833 33.333 0.00 0.00 36.16 3.14
9199 10669 6.767456 TGTTGATTTTTGGTTGGAAGCATAT 58.233 32.000 0.00 0.00 36.16 1.78
9200 10670 6.873076 TGTTGATTTTTGGTTGGAAGCATATC 59.127 34.615 0.00 0.00 36.16 1.63
9201 10671 6.855763 TGATTTTTGGTTGGAAGCATATCT 57.144 33.333 0.00 0.00 36.16 1.98
9202 10672 7.243604 TGATTTTTGGTTGGAAGCATATCTT 57.756 32.000 0.00 0.00 36.16 2.40
9203 10673 7.098477 TGATTTTTGGTTGGAAGCATATCTTG 58.902 34.615 0.00 0.00 36.16 3.02
9204 10674 6.418057 TTTTTGGTTGGAAGCATATCTTGT 57.582 33.333 0.00 0.00 36.16 3.16
9205 10675 6.418057 TTTTGGTTGGAAGCATATCTTGTT 57.582 33.333 0.00 0.00 36.16 2.83
9206 10676 5.643379 TTGGTTGGAAGCATATCTTGTTC 57.357 39.130 0.00 0.00 36.16 3.18
9207 10677 4.661222 TGGTTGGAAGCATATCTTGTTCA 58.339 39.130 0.00 0.00 34.56 3.18
9298 10774 1.516161 TGCATCTGTCTGCTTGTGTC 58.484 50.000 6.55 0.00 42.75 3.67
9495 10985 0.984109 GACAAATCGTTTGCATGCGG 59.016 50.000 14.09 2.25 44.39 5.69
9497 10987 0.984109 CAAATCGTTTGCATGCGGAC 59.016 50.000 14.09 12.83 33.36 4.79
9511 11001 3.836365 TGCGGACCATCATCTCAAATA 57.164 42.857 0.00 0.00 0.00 1.40
9514 11004 5.863965 TGCGGACCATCATCTCAAATAATA 58.136 37.500 0.00 0.00 0.00 0.98
9515 11005 6.475504 TGCGGACCATCATCTCAAATAATAT 58.524 36.000 0.00 0.00 0.00 1.28
9540 11030 4.383861 CTCGCACTGGCAGGCAGA 62.384 66.667 29.85 17.12 41.24 4.26
9637 11127 0.652592 CCTGCACCGAAGCGAATAAG 59.347 55.000 0.00 0.00 37.31 1.73
9721 11212 1.972660 GCCATGTTCCTAGACCGGCT 61.973 60.000 0.00 1.78 35.40 5.52
9743 11234 1.575244 CACATCGTCCTGTGCCTATG 58.425 55.000 3.37 0.00 40.03 2.23
9822 11313 2.432628 GCTGTCGACCAAGACCGG 60.433 66.667 14.12 0.00 40.26 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.537729 AAACGTGTACTAGAAAAATGTTTTCG 57.462 30.769 0.00 0.00 33.86 3.46
8 9 9.248291 CCAGTAGTTAAACGTGTACTAGAAAAA 57.752 33.333 0.00 0.00 0.00 1.94
9 10 8.413229 ACCAGTAGTTAAACGTGTACTAGAAAA 58.587 33.333 0.00 0.00 0.00 2.29
31 32 9.840427 CCTGTGTATTAAAGAAATGTTAACCAG 57.160 33.333 2.48 0.00 0.00 4.00
32 33 9.357161 ACCTGTGTATTAAAGAAATGTTAACCA 57.643 29.630 2.48 0.00 0.00 3.67
142 143 9.650371 GTCAAGCTTTTGGAAATGTTAAAATTC 57.350 29.630 0.00 0.00 0.00 2.17
143 144 9.394767 AGTCAAGCTTTTGGAAATGTTAAAATT 57.605 25.926 0.00 0.00 0.00 1.82
276 279 9.612066 AATTGACCATGTATTCAAAAAGTGTTT 57.388 25.926 5.92 0.00 35.42 2.83
594 611 1.880646 GCCACAGCCTCGGACTTTTTA 60.881 52.381 0.00 0.00 0.00 1.52
622 640 4.749310 CTCGCGTCAGCCCAGCTT 62.749 66.667 5.77 0.00 36.40 3.74
631 649 1.001764 TAGGGAACTCCTCGCGTCA 60.002 57.895 5.77 0.00 44.06 4.35
633 651 0.683504 ATGTAGGGAACTCCTCGCGT 60.684 55.000 5.77 0.00 44.06 6.01
635 653 1.338655 GAGATGTAGGGAACTCCTCGC 59.661 57.143 0.00 0.00 44.06 5.03
637 655 2.619646 GACGAGATGTAGGGAACTCCTC 59.380 54.545 0.00 0.00 44.06 3.71
639 657 2.376109 TGACGAGATGTAGGGAACTCC 58.624 52.381 0.00 0.00 43.67 3.85
640 658 4.216687 CCTATGACGAGATGTAGGGAACTC 59.783 50.000 0.00 0.00 43.67 3.01
657 695 0.485543 TCTCGTATGGGCCCCTATGA 59.514 55.000 23.25 23.25 0.00 2.15
658 696 1.208052 CATCTCGTATGGGCCCCTATG 59.792 57.143 22.27 19.68 0.00 2.23
739 789 3.057456 GGTGACGTAAAGAAGAGAGAGCA 60.057 47.826 0.00 0.00 0.00 4.26
741 791 3.506455 TGGGTGACGTAAAGAAGAGAGAG 59.494 47.826 0.00 0.00 0.00 3.20
742 792 3.493334 TGGGTGACGTAAAGAAGAGAGA 58.507 45.455 0.00 0.00 0.00 3.10
804 854 7.041984 GGATGAAGGAACTATACATCCGTTTTC 60.042 40.741 0.00 0.00 45.51 2.29
828 878 2.502947 CCTCAAGACATCCATCACAGGA 59.497 50.000 0.00 0.00 43.01 3.86
939 989 0.410270 GGGTTGAATGGGGGTGGTTA 59.590 55.000 0.00 0.00 0.00 2.85
1238 1303 2.291741 CCACCAACAAAAGCTCTGAGTC 59.708 50.000 6.53 0.00 0.00 3.36
1239 1304 2.301346 CCACCAACAAAAGCTCTGAGT 58.699 47.619 6.53 0.00 0.00 3.41
1285 1350 1.773653 ACAATTTTTGCCCCACCACAT 59.226 42.857 0.00 0.00 0.00 3.21
1301 1366 8.408043 TCAAGACAATCAAATTCCTACACAAT 57.592 30.769 0.00 0.00 0.00 2.71
1322 1387 4.935808 ACTGCCTAACGACCTAAAATCAAG 59.064 41.667 0.00 0.00 0.00 3.02
1340 1406 0.755327 ACCAGTGGAAACCAACTGCC 60.755 55.000 18.40 0.00 34.18 4.85
1440 1506 6.802348 CGTTCTTATATTATGAGACGTGGGAG 59.198 42.308 0.00 0.00 0.00 4.30
1441 1507 6.263842 ACGTTCTTATATTATGAGACGTGGGA 59.736 38.462 17.06 0.00 34.30 4.37
1442 1508 6.444633 ACGTTCTTATATTATGAGACGTGGG 58.555 40.000 17.06 3.83 34.30 4.61
1443 1509 7.925703 AACGTTCTTATATTATGAGACGTGG 57.074 36.000 17.82 5.48 35.07 4.94
1457 1523 9.575783 TTTCAAACAGCTTAAAAACGTTCTTAT 57.424 25.926 0.00 0.00 0.00 1.73
1458 1524 8.967552 TTTCAAACAGCTTAAAAACGTTCTTA 57.032 26.923 0.00 0.00 0.00 2.10
1459 1525 7.876896 TTTCAAACAGCTTAAAAACGTTCTT 57.123 28.000 0.00 0.00 0.00 2.52
1460 1526 7.876896 TTTTCAAACAGCTTAAAAACGTTCT 57.123 28.000 0.00 0.00 0.00 3.01
1461 1527 8.347196 GTTTTTCAAACAGCTTAAAAACGTTC 57.653 30.769 0.00 0.00 40.14 3.95
1465 1531 8.218441 AGAACGTTTTTCAAACAGCTTAAAAAC 58.782 29.630 0.46 14.66 43.41 2.43
1466 1532 8.300495 AGAACGTTTTTCAAACAGCTTAAAAA 57.700 26.923 0.46 0.00 0.00 1.94
1467 1533 7.876896 AGAACGTTTTTCAAACAGCTTAAAA 57.123 28.000 0.46 0.00 0.00 1.52
1468 1534 7.876896 AAGAACGTTTTTCAAACAGCTTAAA 57.123 28.000 0.46 0.00 0.00 1.52
1471 1537 9.744468 AATATAAGAACGTTTTTCAAACAGCTT 57.256 25.926 7.42 2.37 0.00 3.74
1479 1545 9.675464 AGTCCCATAATATAAGAACGTTTTTCA 57.325 29.630 7.42 0.00 0.00 2.69
1480 1546 9.931210 CAGTCCCATAATATAAGAACGTTTTTC 57.069 33.333 7.42 0.00 0.00 2.29
1481 1547 9.675464 TCAGTCCCATAATATAAGAACGTTTTT 57.325 29.630 9.22 9.22 0.00 1.94
1482 1548 9.326413 CTCAGTCCCATAATATAAGAACGTTTT 57.674 33.333 0.46 0.00 0.00 2.43
1483 1549 7.931948 CCTCAGTCCCATAATATAAGAACGTTT 59.068 37.037 0.46 0.00 0.00 3.60
1484 1550 7.442656 CCTCAGTCCCATAATATAAGAACGTT 58.557 38.462 0.00 0.00 0.00 3.99
1485 1551 6.014499 CCCTCAGTCCCATAATATAAGAACGT 60.014 42.308 0.00 0.00 0.00 3.99
1486 1552 6.014499 ACCCTCAGTCCCATAATATAAGAACG 60.014 42.308 0.00 0.00 0.00 3.95
1487 1553 7.162082 CACCCTCAGTCCCATAATATAAGAAC 58.838 42.308 0.00 0.00 0.00 3.01
1488 1554 6.849697 ACACCCTCAGTCCCATAATATAAGAA 59.150 38.462 0.00 0.00 0.00 2.52
1489 1555 6.390504 ACACCCTCAGTCCCATAATATAAGA 58.609 40.000 0.00 0.00 0.00 2.10
1490 1556 6.688073 ACACCCTCAGTCCCATAATATAAG 57.312 41.667 0.00 0.00 0.00 1.73
1491 1557 7.234782 CACTACACCCTCAGTCCCATAATATAA 59.765 40.741 0.00 0.00 0.00 0.98
1492 1558 6.724441 CACTACACCCTCAGTCCCATAATATA 59.276 42.308 0.00 0.00 0.00 0.86
1493 1559 5.544176 CACTACACCCTCAGTCCCATAATAT 59.456 44.000 0.00 0.00 0.00 1.28
1494 1560 4.899457 CACTACACCCTCAGTCCCATAATA 59.101 45.833 0.00 0.00 0.00 0.98
1495 1561 3.711704 CACTACACCCTCAGTCCCATAAT 59.288 47.826 0.00 0.00 0.00 1.28
1496 1562 3.104512 CACTACACCCTCAGTCCCATAA 58.895 50.000 0.00 0.00 0.00 1.90
1497 1563 2.313643 TCACTACACCCTCAGTCCCATA 59.686 50.000 0.00 0.00 0.00 2.74
1498 1564 1.078823 TCACTACACCCTCAGTCCCAT 59.921 52.381 0.00 0.00 0.00 4.00
1499 1565 0.485543 TCACTACACCCTCAGTCCCA 59.514 55.000 0.00 0.00 0.00 4.37
1500 1566 1.867363 ATCACTACACCCTCAGTCCC 58.133 55.000 0.00 0.00 0.00 4.46
1501 1567 3.515901 AGAAATCACTACACCCTCAGTCC 59.484 47.826 0.00 0.00 0.00 3.85
1502 1568 4.382147 GGAGAAATCACTACACCCTCAGTC 60.382 50.000 0.00 0.00 0.00 3.51
1503 1569 3.515901 GGAGAAATCACTACACCCTCAGT 59.484 47.826 0.00 0.00 0.00 3.41
1504 1570 3.772025 AGGAGAAATCACTACACCCTCAG 59.228 47.826 0.00 0.00 0.00 3.35
1505 1571 3.791320 AGGAGAAATCACTACACCCTCA 58.209 45.455 0.00 0.00 0.00 3.86
1506 1572 4.468153 AGAAGGAGAAATCACTACACCCTC 59.532 45.833 0.00 0.00 0.00 4.30
1507 1573 4.430441 AGAAGGAGAAATCACTACACCCT 58.570 43.478 0.00 0.00 0.00 4.34
1508 1574 4.828072 AGAAGGAGAAATCACTACACCC 57.172 45.455 0.00 0.00 0.00 4.61
1509 1575 5.639931 GTGAAGAAGGAGAAATCACTACACC 59.360 44.000 0.00 0.00 37.87 4.16
1510 1576 5.639931 GGTGAAGAAGGAGAAATCACTACAC 59.360 44.000 0.00 0.00 40.12 2.90
1664 1730 2.551270 ACCCAGCCTCTTCTTATGACA 58.449 47.619 0.00 0.00 0.00 3.58
1665 1731 4.755266 TTACCCAGCCTCTTCTTATGAC 57.245 45.455 0.00 0.00 0.00 3.06
1705 1771 2.990740 AGGTTTTATTCACCCAGGCA 57.009 45.000 0.00 0.00 34.44 4.75
1731 1797 0.946221 GTTCCAGACTGACCAGCACG 60.946 60.000 3.32 0.00 0.00 5.34
1803 1869 1.728323 TGTCACCTCTCCAACATCCA 58.272 50.000 0.00 0.00 0.00 3.41
1843 1939 4.323417 TCATGCTTGTGTTTCTACGGAAT 58.677 39.130 0.00 0.00 0.00 3.01
1946 2239 6.097412 GCATGTCCCTTCTCTAATTTCCATTT 59.903 38.462 0.00 0.00 0.00 2.32
2127 2420 6.017275 AGCAGAGAAGACAACAAAAGAAGATG 60.017 38.462 0.00 0.00 0.00 2.90
2478 2771 3.257393 CGCATATATGAGAACAGAGGGC 58.743 50.000 17.10 0.00 0.00 5.19
2576 2869 7.275920 AGCCTATGATTACCAAGTTACTGAAG 58.724 38.462 0.00 0.00 0.00 3.02
2580 2873 7.195374 TGAAGCCTATGATTACCAAGTTACT 57.805 36.000 0.00 0.00 0.00 2.24
3328 3845 5.504665 GCCATTTGACAGATTAACAGATCCG 60.505 44.000 0.00 0.00 0.00 4.18
3340 3857 1.338105 CGAGTCCAGCCATTTGACAGA 60.338 52.381 0.00 0.00 0.00 3.41
3537 4054 6.309980 GCATCTCTGGTTGACATTATAGATCG 59.690 42.308 0.00 0.00 0.00 3.69
3556 4073 3.365364 CCAAACCGTTTCTTCAGCATCTC 60.365 47.826 0.00 0.00 0.00 2.75
3917 4451 7.973388 CAGAGGACGAAATAATGGCAAAATTTA 59.027 33.333 9.56 0.00 0.00 1.40
3995 4530 0.115745 TTTGGGACGGAGGGAGTACT 59.884 55.000 0.00 0.00 0.00 2.73
3996 4531 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
3997 4532 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
3998 4533 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
3999 4534 3.577805 ATTATTTTGGGACGGAGGGAG 57.422 47.619 0.00 0.00 0.00 4.30
4000 4535 3.010808 ACAATTATTTTGGGACGGAGGGA 59.989 43.478 0.00 0.00 0.00 4.20
4001 4536 3.361786 ACAATTATTTTGGGACGGAGGG 58.638 45.455 0.00 0.00 0.00 4.30
4002 4537 4.270008 AGACAATTATTTTGGGACGGAGG 58.730 43.478 0.00 0.00 0.00 4.30
4003 4538 4.941263 TGAGACAATTATTTTGGGACGGAG 59.059 41.667 0.00 0.00 0.00 4.63
4004 4539 4.912586 TGAGACAATTATTTTGGGACGGA 58.087 39.130 0.00 0.00 0.00 4.69
4005 4540 5.183140 ACTTGAGACAATTATTTTGGGACGG 59.817 40.000 0.00 0.00 0.00 4.79
4006 4541 6.254281 ACTTGAGACAATTATTTTGGGACG 57.746 37.500 0.00 0.00 0.00 4.79
4007 4542 9.626045 CTAAACTTGAGACAATTATTTTGGGAC 57.374 33.333 0.00 0.00 0.00 4.46
4008 4543 9.362151 ACTAAACTTGAGACAATTATTTTGGGA 57.638 29.630 0.00 0.00 0.00 4.37
4034 4569 8.400184 TGAACTAGCTCTAGTACAAAGTTGTA 57.600 34.615 9.72 0.00 44.96 2.41
4035 4570 7.286215 TGAACTAGCTCTAGTACAAAGTTGT 57.714 36.000 9.72 1.75 44.96 3.32
4036 4571 8.589335 TTTGAACTAGCTCTAGTACAAAGTTG 57.411 34.615 9.72 0.00 44.96 3.16
4037 4572 9.780186 ATTTTGAACTAGCTCTAGTACAAAGTT 57.220 29.630 9.72 0.00 44.96 2.66
4038 4573 9.780186 AATTTTGAACTAGCTCTAGTACAAAGT 57.220 29.630 9.72 6.40 44.96 2.66
4040 4575 9.772973 TCAATTTTGAACTAGCTCTAGTACAAA 57.227 29.630 9.72 9.31 44.96 2.83
4041 4576 9.424319 CTCAATTTTGAACTAGCTCTAGTACAA 57.576 33.333 9.72 1.88 44.96 2.41
4042 4577 8.803235 TCTCAATTTTGAACTAGCTCTAGTACA 58.197 33.333 9.72 0.00 44.96 2.90
4043 4578 9.078753 GTCTCAATTTTGAACTAGCTCTAGTAC 57.921 37.037 9.72 0.00 44.96 2.73
4044 4579 8.803235 TGTCTCAATTTTGAACTAGCTCTAGTA 58.197 33.333 9.72 0.00 44.96 1.82
4046 4581 7.816995 AGTGTCTCAATTTTGAACTAGCTCTAG 59.183 37.037 0.00 2.55 36.64 2.43
4047 4582 7.671302 AGTGTCTCAATTTTGAACTAGCTCTA 58.329 34.615 0.00 0.00 36.64 2.43
4048 4583 6.529220 AGTGTCTCAATTTTGAACTAGCTCT 58.471 36.000 0.00 0.00 36.64 4.09
4049 4584 6.793492 AGTGTCTCAATTTTGAACTAGCTC 57.207 37.500 0.00 0.00 36.64 4.09
4050 4585 8.854614 ATAAGTGTCTCAATTTTGAACTAGCT 57.145 30.769 0.00 0.00 36.64 3.32
4051 4586 9.899226 AAATAAGTGTCTCAATTTTGAACTAGC 57.101 29.630 0.00 0.00 36.64 3.42
4054 4589 9.533253 CCAAAATAAGTGTCTCAATTTTGAACT 57.467 29.630 16.76 0.00 45.56 3.01
4055 4590 8.764287 CCCAAAATAAGTGTCTCAATTTTGAAC 58.236 33.333 16.76 0.00 45.56 3.18
4056 4591 8.700051 TCCCAAAATAAGTGTCTCAATTTTGAA 58.300 29.630 16.76 5.94 45.56 2.69
4057 4592 8.141268 GTCCCAAAATAAGTGTCTCAATTTTGA 58.859 33.333 16.76 0.00 45.56 2.69
4058 4593 7.114811 CGTCCCAAAATAAGTGTCTCAATTTTG 59.885 37.037 10.80 10.80 43.77 2.44
4059 4594 7.145323 CGTCCCAAAATAAGTGTCTCAATTTT 58.855 34.615 0.00 0.00 33.07 1.82
4060 4595 6.294508 CCGTCCCAAAATAAGTGTCTCAATTT 60.295 38.462 0.00 0.00 0.00 1.82
4061 4596 5.183140 CCGTCCCAAAATAAGTGTCTCAATT 59.817 40.000 0.00 0.00 0.00 2.32
4062 4597 4.700213 CCGTCCCAAAATAAGTGTCTCAAT 59.300 41.667 0.00 0.00 0.00 2.57
4063 4598 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
4064 4599 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
4065 4600 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
4066 4601 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
4067 4602 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
4068 4603 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
4069 4604 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
4070 4605 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
4071 4606 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
4072 4607 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
4073 4608 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
4074 4609 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
4075 4610 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
4076 4611 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
4077 4612 2.605257 CATATACTCCCTCCGTCCCAA 58.395 52.381 0.00 0.00 0.00 4.12
4078 4613 1.826042 GCATATACTCCCTCCGTCCCA 60.826 57.143 0.00 0.00 0.00 4.37
4079 4614 0.896226 GCATATACTCCCTCCGTCCC 59.104 60.000 0.00 0.00 0.00 4.46
4080 4615 1.926108 AGCATATACTCCCTCCGTCC 58.074 55.000 0.00 0.00 0.00 4.79
4081 4616 2.628657 ACAAGCATATACTCCCTCCGTC 59.371 50.000 0.00 0.00 0.00 4.79
4082 4617 2.365617 CACAAGCATATACTCCCTCCGT 59.634 50.000 0.00 0.00 0.00 4.69
4083 4618 2.289072 CCACAAGCATATACTCCCTCCG 60.289 54.545 0.00 0.00 0.00 4.63
4084 4619 2.706190 ACCACAAGCATATACTCCCTCC 59.294 50.000 0.00 0.00 0.00 4.30
4085 4620 4.423625 AACCACAAGCATATACTCCCTC 57.576 45.455 0.00 0.00 0.00 4.30
4086 4621 5.846714 AGATAACCACAAGCATATACTCCCT 59.153 40.000 0.00 0.00 0.00 4.20
4087 4622 6.115448 AGATAACCACAAGCATATACTCCC 57.885 41.667 0.00 0.00 0.00 4.30
4088 4623 7.445945 AGAAGATAACCACAAGCATATACTCC 58.554 38.462 0.00 0.00 0.00 3.85
4089 4624 8.364142 AGAGAAGATAACCACAAGCATATACTC 58.636 37.037 0.00 0.00 0.00 2.59
4114 4649 9.169592 GTTAGTGGGAGTTAGCTATCTAGATAG 57.830 40.741 28.51 28.51 42.76 2.08
4186 4721 1.079888 GTGGGCCTTTTTCCATGCG 60.080 57.895 4.53 0.00 35.28 4.73
4296 4831 8.247562 TGTTGGGTTTGATTATTGTATAGTTGC 58.752 33.333 0.00 0.00 0.00 4.17
4362 4898 1.738099 ACGTTGCCGCAGAGATGTC 60.738 57.895 0.00 0.00 37.70 3.06
4437 4978 9.965824 CTTATCCAAACAACAGACATAAAACTT 57.034 29.630 0.00 0.00 0.00 2.66
4587 5130 6.013725 TGAGAACTACCTTTATTTCTCCTGCA 60.014 38.462 7.53 0.00 40.70 4.41
4854 5481 6.375174 GGCAGGTGCATCACAATATATAATGA 59.625 38.462 0.00 1.59 44.36 2.57
4901 5528 6.579666 AACAGACAATATTGCATGTTCAGT 57.420 33.333 23.31 11.86 36.18 3.41
4982 5609 8.306761 ACAGTCAGACCAATTCAAATTAAATCC 58.693 33.333 0.00 0.00 0.00 3.01
5272 5914 7.702348 AGTTACAAACTCGTATACCGGTTTATC 59.298 37.037 15.04 3.58 37.02 1.75
5273 5915 7.547227 AGTTACAAACTCGTATACCGGTTTAT 58.453 34.615 15.04 3.06 37.02 1.40
5274 5916 6.919721 AGTTACAAACTCGTATACCGGTTTA 58.080 36.000 15.04 6.52 37.02 2.01
5275 5917 5.783111 AGTTACAAACTCGTATACCGGTTT 58.217 37.500 15.04 7.86 37.02 3.27
5278 5920 5.644644 AGAAGTTACAAACTCGTATACCGG 58.355 41.667 0.00 0.00 41.91 5.28
5302 5946 4.789012 AGCAGTTCAAGAGAGAAGAGAG 57.211 45.455 0.00 0.00 0.00 3.20
5560 6216 7.387948 GTGTCAAACGCTCTTATATTATGGGAT 59.612 37.037 0.00 0.00 0.00 3.85
5604 6260 5.046591 CCCTTCGTCCCATAATATAAGAGCA 60.047 44.000 0.00 0.00 0.00 4.26
5735 6393 8.322091 AGTAGTATCAACTGCAATTTCCTAGTT 58.678 33.333 0.00 0.00 40.50 2.24
5813 6471 7.379750 ACTCCCTCTATCAAAATATAAGACGC 58.620 38.462 0.00 0.00 0.00 5.19
6125 6791 3.117552 AGGAACGGAGGGAATAGTTCT 57.882 47.619 7.05 0.00 41.72 3.01
6175 6842 5.079689 TCATTTGCTTCGTATGTAGTCCA 57.920 39.130 0.00 0.00 0.00 4.02
6285 7289 6.740110 AGTAAATGAGACTGCCTTATACTCG 58.260 40.000 0.00 0.00 0.00 4.18
6542 7547 5.165961 ACAAAAGTGAGCTGCCTTATCTA 57.834 39.130 0.00 0.00 0.00 1.98
6580 7585 5.672819 GCTTGGCTTTAGTAACCACATTACG 60.673 44.000 0.00 0.00 46.77 3.18
6716 7721 5.590663 TGGTACATAAGCAAGAACACAAACA 59.409 36.000 0.00 0.00 31.13 2.83
6842 7937 6.769822 CCATATAGAGCCTTCACAAACTGAAT 59.230 38.462 0.00 0.00 38.26 2.57
6907 8002 9.930693 AAGGAGAAGTAAATAACTAGTCACAAG 57.069 33.333 0.00 0.00 37.50 3.16
6953 8048 3.713248 TGAGACGGAGGGAGTACATACTA 59.287 47.826 0.00 0.00 36.50 1.82
6954 8049 2.508716 TGAGACGGAGGGAGTACATACT 59.491 50.000 0.00 0.00 39.71 2.12
6955 8050 2.928334 TGAGACGGAGGGAGTACATAC 58.072 52.381 0.00 0.00 0.00 2.39
6956 8051 3.657398 TTGAGACGGAGGGAGTACATA 57.343 47.619 0.00 0.00 0.00 2.29
6957 8052 2.526888 TTGAGACGGAGGGAGTACAT 57.473 50.000 0.00 0.00 0.00 2.29
6958 8053 2.297698 TTTGAGACGGAGGGAGTACA 57.702 50.000 0.00 0.00 0.00 2.90
6959 8054 3.889520 ATTTTGAGACGGAGGGAGTAC 57.110 47.619 0.00 0.00 0.00 2.73
6960 8055 6.070424 ACATTTATTTTGAGACGGAGGGAGTA 60.070 38.462 0.00 0.00 0.00 2.59
6961 8056 4.903045 TTTATTTTGAGACGGAGGGAGT 57.097 40.909 0.00 0.00 0.00 3.85
6962 8057 5.186198 ACATTTATTTTGAGACGGAGGGAG 58.814 41.667 0.00 0.00 0.00 4.30
6963 8058 5.045869 AGACATTTATTTTGAGACGGAGGGA 60.046 40.000 0.00 0.00 0.00 4.20
6964 8059 5.186198 AGACATTTATTTTGAGACGGAGGG 58.814 41.667 0.00 0.00 0.00 4.30
6965 8060 6.371548 TCAAGACATTTATTTTGAGACGGAGG 59.628 38.462 0.00 0.00 0.00 4.30
6966 8061 7.118390 ACTCAAGACATTTATTTTGAGACGGAG 59.882 37.037 17.12 0.00 45.82 4.63
6967 8062 6.934645 ACTCAAGACATTTATTTTGAGACGGA 59.065 34.615 17.12 0.00 45.82 4.69
6968 8063 7.133891 ACTCAAGACATTTATTTTGAGACGG 57.866 36.000 17.12 0.00 45.82 4.79
7007 8102 7.881751 TGTCTCAACTTTGTACTAGCTCTAGTA 59.118 37.037 11.59 11.59 43.98 1.82
7009 8104 7.024768 GTGTCTCAACTTTGTACTAGCTCTAG 58.975 42.308 0.00 2.55 39.04 2.43
7010 8105 6.715718 AGTGTCTCAACTTTGTACTAGCTCTA 59.284 38.462 0.00 0.00 0.00 2.43
7011 8106 5.536916 AGTGTCTCAACTTTGTACTAGCTCT 59.463 40.000 0.00 0.00 0.00 4.09
7012 8107 5.774630 AGTGTCTCAACTTTGTACTAGCTC 58.225 41.667 0.00 0.00 0.00 4.09
7013 8108 5.793030 AGTGTCTCAACTTTGTACTAGCT 57.207 39.130 0.00 0.00 0.00 3.32
7014 8109 8.535690 AATAAGTGTCTCAACTTTGTACTAGC 57.464 34.615 0.00 0.00 40.77 3.42
7017 8112 8.621286 CCAAAATAAGTGTCTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
7018 8113 7.860872 CCCAAAATAAGTGTCTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
7019 8114 7.776030 TCCCAAAATAAGTGTCTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
7020 8115 6.605594 TCCCAAAATAAGTGTCTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
7021 8116 6.918022 GTCCCAAAATAAGTGTCTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
7022 8117 6.238648 CGTCCCAAAATAAGTGTCTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
7023 8118 5.238650 CGTCCCAAAATAAGTGTCTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
7024 8119 4.755123 CGTCCCAAAATAAGTGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
7025 8120 4.083484 CCGTCCCAAAATAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
7026 8121 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
7027 8122 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
7028 8123 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
7029 8124 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
7030 8125 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
7031 8126 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
7032 8127 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
7033 8128 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
7034 8129 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
7035 8130 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
7036 8131 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
7037 8132 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
7038 8133 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
7039 8134 1.961133 AATACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
7040 8135 1.961133 AAATACTCCCTCCGTCCCAA 58.039 50.000 0.00 0.00 0.00 4.12
7041 8136 2.245546 TCTAAATACTCCCTCCGTCCCA 59.754 50.000 0.00 0.00 0.00 4.37
7042 8137 2.954792 TCTAAATACTCCCTCCGTCCC 58.045 52.381 0.00 0.00 0.00 4.46
7043 8138 6.854091 ATTATCTAAATACTCCCTCCGTCC 57.146 41.667 0.00 0.00 0.00 4.79
7046 8141 9.517609 CGATTTATTATCTAAATACTCCCTCCG 57.482 37.037 0.00 0.00 0.00 4.63
7047 8142 9.819267 CCGATTTATTATCTAAATACTCCCTCC 57.181 37.037 0.00 0.00 0.00 4.30
7228 8327 5.906113 ATACAGAGAACGATGTCTTCAGT 57.094 39.130 0.00 0.00 0.00 3.41
7303 8402 7.817478 TGTTTATTCTTCTTGCGATTAGAGACA 59.183 33.333 0.00 0.00 0.00 3.41
7346 8445 6.183360 CCATACAGAGCTTTTGTGATTACCAG 60.183 42.308 13.33 0.00 0.00 4.00
7423 8522 4.870426 ACATCTAATACTTGTGAAGCCACG 59.130 41.667 0.00 0.00 46.06 4.94
7450 8549 1.978580 ACGAGGAAGTTGAGTGGGATT 59.021 47.619 0.00 0.00 0.00 3.01
7863 9030 9.196139 CCCAATAAATAAACTATCAACCTCCAA 57.804 33.333 0.00 0.00 0.00 3.53
7864 9031 7.782644 CCCCAATAAATAAACTATCAACCTCCA 59.217 37.037 0.00 0.00 0.00 3.86
7865 9032 8.002459 TCCCCAATAAATAAACTATCAACCTCC 58.998 37.037 0.00 0.00 0.00 4.30
7866 9033 8.990163 TCCCCAATAAATAAACTATCAACCTC 57.010 34.615 0.00 0.00 0.00 3.85
7867 9034 9.421399 CTTCCCCAATAAATAAACTATCAACCT 57.579 33.333 0.00 0.00 0.00 3.50
7868 9035 9.416284 TCTTCCCCAATAAATAAACTATCAACC 57.584 33.333 0.00 0.00 0.00 3.77
7871 9038 9.847224 GACTCTTCCCCAATAAATAAACTATCA 57.153 33.333 0.00 0.00 0.00 2.15
7872 9039 9.847224 TGACTCTTCCCCAATAAATAAACTATC 57.153 33.333 0.00 0.00 0.00 2.08
7875 9042 9.190317 GATTGACTCTTCCCCAATAAATAAACT 57.810 33.333 0.00 0.00 31.40 2.66
7876 9043 8.414003 GGATTGACTCTTCCCCAATAAATAAAC 58.586 37.037 0.00 0.00 31.40 2.01
7877 9044 8.343787 AGGATTGACTCTTCCCCAATAAATAAA 58.656 33.333 0.00 0.00 31.40 1.40
7878 9045 7.882755 AGGATTGACTCTTCCCCAATAAATAA 58.117 34.615 0.00 0.00 31.40 1.40
7879 9046 7.465900 AGGATTGACTCTTCCCCAATAAATA 57.534 36.000 0.00 0.00 31.40 1.40
7880 9047 6.347061 AGGATTGACTCTTCCCCAATAAAT 57.653 37.500 0.00 0.00 31.40 1.40
7881 9048 5.796502 AGGATTGACTCTTCCCCAATAAA 57.203 39.130 0.00 0.00 31.40 1.40
7882 9049 5.492524 AGAAGGATTGACTCTTCCCCAATAA 59.507 40.000 0.00 0.00 39.97 1.40
7883 9050 5.039645 AGAAGGATTGACTCTTCCCCAATA 58.960 41.667 0.00 0.00 39.97 1.90
7884 9051 3.854994 AGAAGGATTGACTCTTCCCCAAT 59.145 43.478 0.00 0.00 39.97 3.16
7885 9052 3.260205 AGAAGGATTGACTCTTCCCCAA 58.740 45.455 0.00 0.00 39.97 4.12
7886 9053 2.840651 GAGAAGGATTGACTCTTCCCCA 59.159 50.000 0.00 0.00 39.97 4.96
7887 9054 3.111484 AGAGAAGGATTGACTCTTCCCC 58.889 50.000 0.00 0.00 39.97 4.81
7888 9055 4.835284 AAGAGAAGGATTGACTCTTCCC 57.165 45.455 0.00 0.00 44.32 3.97
7892 9059 5.332743 AGTGAGAAGAGAAGGATTGACTCT 58.667 41.667 0.00 0.00 41.86 3.24
7893 9060 5.659440 AGTGAGAAGAGAAGGATTGACTC 57.341 43.478 0.00 0.00 0.00 3.36
7894 9061 5.541868 TGAAGTGAGAAGAGAAGGATTGACT 59.458 40.000 0.00 0.00 0.00 3.41
7895 9062 5.788450 TGAAGTGAGAAGAGAAGGATTGAC 58.212 41.667 0.00 0.00 0.00 3.18
7896 9063 6.268617 TCTTGAAGTGAGAAGAGAAGGATTGA 59.731 38.462 0.00 0.00 0.00 2.57
7897 9064 6.462500 TCTTGAAGTGAGAAGAGAAGGATTG 58.538 40.000 0.00 0.00 0.00 2.67
7898 9065 6.678568 TCTTGAAGTGAGAAGAGAAGGATT 57.321 37.500 0.00 0.00 0.00 3.01
7899 9066 6.872585 ATCTTGAAGTGAGAAGAGAAGGAT 57.127 37.500 0.00 0.00 31.83 3.24
7900 9067 6.268617 TCAATCTTGAAGTGAGAAGAGAAGGA 59.731 38.462 0.00 0.00 33.55 3.36
7901 9068 6.462500 TCAATCTTGAAGTGAGAAGAGAAGG 58.538 40.000 0.00 0.00 33.55 3.46
7902 9069 7.818446 TGATCAATCTTGAAGTGAGAAGAGAAG 59.182 37.037 0.00 0.00 41.13 2.85
7903 9070 7.674120 TGATCAATCTTGAAGTGAGAAGAGAA 58.326 34.615 0.00 0.00 41.13 2.87
7904 9071 7.237209 TGATCAATCTTGAAGTGAGAAGAGA 57.763 36.000 0.00 0.00 41.13 3.10
7905 9072 7.982919 AGATGATCAATCTTGAAGTGAGAAGAG 59.017 37.037 0.00 0.00 43.52 2.85
7906 9073 7.849160 AGATGATCAATCTTGAAGTGAGAAGA 58.151 34.615 0.00 0.00 43.52 2.87
7907 9074 7.043258 CGAGATGATCAATCTTGAAGTGAGAAG 60.043 40.741 0.00 0.00 46.34 2.85
7908 9075 6.755607 CGAGATGATCAATCTTGAAGTGAGAA 59.244 38.462 0.00 0.00 46.34 2.87
7909 9076 6.271566 CGAGATGATCAATCTTGAAGTGAGA 58.728 40.000 0.00 0.00 46.34 3.27
7910 9077 6.513609 CGAGATGATCAATCTTGAAGTGAG 57.486 41.667 0.00 0.00 46.34 3.51
7917 9084 3.725490 TGGCTCGAGATGATCAATCTTG 58.275 45.455 18.75 7.65 46.12 3.02
7918 9085 4.283978 AGATGGCTCGAGATGATCAATCTT 59.716 41.667 18.75 0.00 46.12 2.40
7920 9087 3.927758 CAGATGGCTCGAGATGATCAATC 59.072 47.826 18.75 6.44 35.29 2.67
7921 9088 3.324268 ACAGATGGCTCGAGATGATCAAT 59.676 43.478 18.75 0.00 0.00 2.57
7922 9089 2.697229 ACAGATGGCTCGAGATGATCAA 59.303 45.455 18.75 0.00 0.00 2.57
7923 9090 2.314246 ACAGATGGCTCGAGATGATCA 58.686 47.619 18.75 0.00 0.00 2.92
7924 9091 3.058450 CAACAGATGGCTCGAGATGATC 58.942 50.000 18.75 13.01 0.00 2.92
7925 9092 2.697229 TCAACAGATGGCTCGAGATGAT 59.303 45.455 18.75 3.60 0.00 2.45
7926 9093 2.100418 CTCAACAGATGGCTCGAGATGA 59.900 50.000 18.75 5.66 0.00 2.92
7927 9094 2.471818 CTCAACAGATGGCTCGAGATG 58.528 52.381 18.75 8.42 0.00 2.90
7928 9095 1.411977 CCTCAACAGATGGCTCGAGAT 59.588 52.381 18.75 0.41 0.00 2.75
7929 9096 0.820226 CCTCAACAGATGGCTCGAGA 59.180 55.000 18.75 0.00 0.00 4.04
7930 9097 0.179089 CCCTCAACAGATGGCTCGAG 60.179 60.000 8.45 8.45 0.00 4.04
7931 9098 0.904865 ACCCTCAACAGATGGCTCGA 60.905 55.000 0.00 0.00 0.00 4.04
7932 9099 0.742281 CACCCTCAACAGATGGCTCG 60.742 60.000 0.00 0.00 0.00 5.03
7933 9100 0.393537 CCACCCTCAACAGATGGCTC 60.394 60.000 0.00 0.00 0.00 4.70
7934 9101 0.842030 TCCACCCTCAACAGATGGCT 60.842 55.000 0.00 0.00 0.00 4.75
7935 9102 0.038166 TTCCACCCTCAACAGATGGC 59.962 55.000 0.00 0.00 0.00 4.40
7936 9103 2.584835 TTTCCACCCTCAACAGATGG 57.415 50.000 0.00 0.00 0.00 3.51
7937 9104 6.434028 TCTTAAATTTCCACCCTCAACAGATG 59.566 38.462 0.00 0.00 0.00 2.90
7938 9105 6.552008 TCTTAAATTTCCACCCTCAACAGAT 58.448 36.000 0.00 0.00 0.00 2.90
7939 9106 5.947663 TCTTAAATTTCCACCCTCAACAGA 58.052 37.500 0.00 0.00 0.00 3.41
7940 9107 6.648879 TTCTTAAATTTCCACCCTCAACAG 57.351 37.500 0.00 0.00 0.00 3.16
7941 9108 8.713708 TTATTCTTAAATTTCCACCCTCAACA 57.286 30.769 0.00 0.00 0.00 3.33
7972 9139 7.754625 AGACGACTAAACAAGTTTGCTTAAAA 58.245 30.769 8.37 0.00 39.07 1.52
7973 9140 7.311364 AGACGACTAAACAAGTTTGCTTAAA 57.689 32.000 8.37 0.00 39.07 1.52
7974 9141 6.913873 AGACGACTAAACAAGTTTGCTTAA 57.086 33.333 8.37 0.00 39.07 1.85
7975 9142 7.168637 CAGTAGACGACTAAACAAGTTTGCTTA 59.831 37.037 8.37 0.00 39.07 3.09
7976 9143 6.018994 CAGTAGACGACTAAACAAGTTTGCTT 60.019 38.462 8.37 0.00 39.07 3.91
7977 9144 5.462398 CAGTAGACGACTAAACAAGTTTGCT 59.538 40.000 8.37 0.00 39.07 3.91
7978 9145 5.233689 ACAGTAGACGACTAAACAAGTTTGC 59.766 40.000 8.37 0.00 39.07 3.68
7979 9146 6.823678 ACAGTAGACGACTAAACAAGTTTG 57.176 37.500 8.37 1.94 39.07 2.93
7980 9147 7.710896 AGTACAGTAGACGACTAAACAAGTTT 58.289 34.615 3.47 3.47 39.07 2.66
7981 9148 7.269477 AGTACAGTAGACGACTAAACAAGTT 57.731 36.000 0.00 0.00 39.07 2.66
7982 9149 6.874288 AGTACAGTAGACGACTAAACAAGT 57.126 37.500 0.00 0.00 42.80 3.16
7983 9150 7.118971 ACCTAGTACAGTAGACGACTAAACAAG 59.881 40.741 0.00 0.00 35.64 3.16
7984 9151 6.936900 ACCTAGTACAGTAGACGACTAAACAA 59.063 38.462 0.00 0.00 35.64 2.83
7985 9152 6.467677 ACCTAGTACAGTAGACGACTAAACA 58.532 40.000 0.00 0.00 35.64 2.83
7986 9153 6.237701 CGACCTAGTACAGTAGACGACTAAAC 60.238 46.154 0.00 0.00 35.64 2.01
7987 9154 5.807520 CGACCTAGTACAGTAGACGACTAAA 59.192 44.000 0.00 0.00 35.64 1.85
7988 9155 5.344066 CGACCTAGTACAGTAGACGACTAA 58.656 45.833 0.00 0.00 35.64 2.24
7989 9156 4.734989 GCGACCTAGTACAGTAGACGACTA 60.735 50.000 0.00 0.00 35.64 2.59
7990 9157 3.779759 CGACCTAGTACAGTAGACGACT 58.220 50.000 0.00 0.00 39.82 4.18
7991 9158 2.283884 GCGACCTAGTACAGTAGACGAC 59.716 54.545 0.00 0.00 0.00 4.34
7992 9159 2.167281 AGCGACCTAGTACAGTAGACGA 59.833 50.000 0.00 0.00 0.00 4.20
7993 9160 2.548875 AGCGACCTAGTACAGTAGACG 58.451 52.381 0.00 0.89 0.00 4.18
7994 9161 6.616774 AATAAGCGACCTAGTACAGTAGAC 57.383 41.667 0.00 0.00 0.00 2.59
7995 9162 6.459298 GCAAATAAGCGACCTAGTACAGTAGA 60.459 42.308 0.00 0.00 0.00 2.59
8099 9525 5.692115 TTCATGCACACTATTTAGGAGGA 57.308 39.130 0.00 0.00 0.00 3.71
8283 9747 3.252458 GGCTAAACTGAACCATGAAACGT 59.748 43.478 0.00 0.00 0.00 3.99
8313 9777 3.712016 AAACCCACATTTTATTGGCCC 57.288 42.857 0.00 0.00 0.00 5.80
8475 9942 9.440773 CATGCACTAGATCTTTAGCCATATTTA 57.559 33.333 0.00 0.00 0.00 1.40
8554 10021 0.457853 GTGCAATGCATCACAGCCAG 60.458 55.000 12.38 0.00 41.91 4.85
8582 10049 8.188799 GCCAAATGGTTTAACCTACTTAATCTC 58.811 37.037 15.68 0.00 39.58 2.75
8743 10212 3.181497 CCTTGTATTGCCGACCATGAAAG 60.181 47.826 0.00 0.00 0.00 2.62
8792 10261 3.944650 ACAGACATGCAAACAGTTGTACA 59.055 39.130 0.00 0.00 37.06 2.90
8860 10330 3.084536 TCATCTGCCATTACCTGCAAA 57.915 42.857 0.00 0.00 36.98 3.68
8931 10401 1.523758 ACGCTGATTTGGACCAACTC 58.476 50.000 15.82 15.82 0.00 3.01
8933 10403 2.034053 TCAAACGCTGATTTGGACCAAC 59.966 45.455 6.36 0.00 39.57 3.77
9002 10472 2.452600 ACCCAAAACCAGAAAGAGCA 57.547 45.000 0.00 0.00 0.00 4.26
9102 10572 4.759183 GGCTCATCTTATTCTTGGGACATC 59.241 45.833 0.00 0.00 39.30 3.06
9106 10576 4.860802 TTGGCTCATCTTATTCTTGGGA 57.139 40.909 0.00 0.00 0.00 4.37
9150 10620 4.114794 CAAACAAAGCTGAACCTTCCAAG 58.885 43.478 0.00 0.00 0.00 3.61
9151 10621 3.118811 CCAAACAAAGCTGAACCTTCCAA 60.119 43.478 0.00 0.00 0.00 3.53
9152 10622 2.430332 CCAAACAAAGCTGAACCTTCCA 59.570 45.455 0.00 0.00 0.00 3.53
9154 10624 3.801114 ACCAAACAAAGCTGAACCTTC 57.199 42.857 0.00 0.00 0.00 3.46
9155 10625 3.260632 ACAACCAAACAAAGCTGAACCTT 59.739 39.130 0.00 0.00 0.00 3.50
9156 10626 2.831526 ACAACCAAACAAAGCTGAACCT 59.168 40.909 0.00 0.00 0.00 3.50
9157 10627 3.245518 ACAACCAAACAAAGCTGAACC 57.754 42.857 0.00 0.00 0.00 3.62
9158 10628 4.241681 TCAACAACCAAACAAAGCTGAAC 58.758 39.130 0.00 0.00 0.00 3.18
9159 10629 4.527509 TCAACAACCAAACAAAGCTGAA 57.472 36.364 0.00 0.00 0.00 3.02
9160 10630 4.734398 ATCAACAACCAAACAAAGCTGA 57.266 36.364 0.00 0.00 0.00 4.26
9161 10631 5.799681 AAATCAACAACCAAACAAAGCTG 57.200 34.783 0.00 0.00 0.00 4.24
9162 10632 6.349197 CCAAAAATCAACAACCAAACAAAGCT 60.349 34.615 0.00 0.00 0.00 3.74
9163 10633 5.799435 CCAAAAATCAACAACCAAACAAAGC 59.201 36.000 0.00 0.00 0.00 3.51
9164 10634 6.907741 ACCAAAAATCAACAACCAAACAAAG 58.092 32.000 0.00 0.00 0.00 2.77
9165 10635 6.884280 ACCAAAAATCAACAACCAAACAAA 57.116 29.167 0.00 0.00 0.00 2.83
9166 10636 6.294176 CCAACCAAAAATCAACAACCAAACAA 60.294 34.615 0.00 0.00 0.00 2.83
9167 10637 5.182001 CCAACCAAAAATCAACAACCAAACA 59.818 36.000 0.00 0.00 0.00 2.83
9168 10638 5.412904 TCCAACCAAAAATCAACAACCAAAC 59.587 36.000 0.00 0.00 0.00 2.93
9169 10639 5.560724 TCCAACCAAAAATCAACAACCAAA 58.439 33.333 0.00 0.00 0.00 3.28
9170 10640 5.165961 TCCAACCAAAAATCAACAACCAA 57.834 34.783 0.00 0.00 0.00 3.67
9171 10641 4.826274 TCCAACCAAAAATCAACAACCA 57.174 36.364 0.00 0.00 0.00 3.67
9172 10642 4.035091 GCTTCCAACCAAAAATCAACAACC 59.965 41.667 0.00 0.00 0.00 3.77
9173 10643 4.633565 TGCTTCCAACCAAAAATCAACAAC 59.366 37.500 0.00 0.00 0.00 3.32
9174 10644 4.836825 TGCTTCCAACCAAAAATCAACAA 58.163 34.783 0.00 0.00 0.00 2.83
9175 10645 4.478206 TGCTTCCAACCAAAAATCAACA 57.522 36.364 0.00 0.00 0.00 3.33
9176 10646 7.099120 AGATATGCTTCCAACCAAAAATCAAC 58.901 34.615 0.00 0.00 0.00 3.18
9177 10647 7.243604 AGATATGCTTCCAACCAAAAATCAA 57.756 32.000 0.00 0.00 0.00 2.57
9178 10648 6.855763 AGATATGCTTCCAACCAAAAATCA 57.144 33.333 0.00 0.00 0.00 2.57
9179 10649 7.099120 ACAAGATATGCTTCCAACCAAAAATC 58.901 34.615 0.00 0.00 33.60 2.17
9180 10650 7.008021 ACAAGATATGCTTCCAACCAAAAAT 57.992 32.000 0.00 0.00 33.60 1.82
9181 10651 6.418057 ACAAGATATGCTTCCAACCAAAAA 57.582 33.333 0.00 0.00 33.60 1.94
9182 10652 6.041409 TGAACAAGATATGCTTCCAACCAAAA 59.959 34.615 0.00 0.00 33.60 2.44
9183 10653 5.538053 TGAACAAGATATGCTTCCAACCAAA 59.462 36.000 0.00 0.00 33.60 3.28
9184 10654 5.076182 TGAACAAGATATGCTTCCAACCAA 58.924 37.500 0.00 0.00 33.60 3.67
9185 10655 4.661222 TGAACAAGATATGCTTCCAACCA 58.339 39.130 0.00 0.00 33.60 3.67
9186 10656 4.439289 GCTGAACAAGATATGCTTCCAACC 60.439 45.833 0.00 0.00 33.60 3.77
9187 10657 4.666237 GCTGAACAAGATATGCTTCCAAC 58.334 43.478 0.00 0.00 33.60 3.77
9188 10658 3.374988 CGCTGAACAAGATATGCTTCCAA 59.625 43.478 0.00 0.00 33.60 3.53
9189 10659 2.938451 CGCTGAACAAGATATGCTTCCA 59.062 45.455 0.00 0.00 33.60 3.53
9190 10660 2.289002 CCGCTGAACAAGATATGCTTCC 59.711 50.000 0.00 0.00 33.60 3.46
9191 10661 3.198068 TCCGCTGAACAAGATATGCTTC 58.802 45.455 0.00 0.00 33.60 3.86
9192 10662 3.266510 TCCGCTGAACAAGATATGCTT 57.733 42.857 0.00 0.00 37.29 3.91
9193 10663 2.988010 TCCGCTGAACAAGATATGCT 57.012 45.000 0.00 0.00 0.00 3.79
9194 10664 2.286654 GCTTCCGCTGAACAAGATATGC 60.287 50.000 0.00 0.00 0.00 3.14
9195 10665 2.938451 TGCTTCCGCTGAACAAGATATG 59.062 45.455 0.00 0.00 36.97 1.78
9196 10666 3.266510 TGCTTCCGCTGAACAAGATAT 57.733 42.857 0.00 0.00 36.97 1.63
9197 10667 2.760634 TGCTTCCGCTGAACAAGATA 57.239 45.000 0.00 0.00 36.97 1.98
9198 10668 2.119801 ATGCTTCCGCTGAACAAGAT 57.880 45.000 0.00 0.00 36.97 2.40
9199 10669 2.760634 TATGCTTCCGCTGAACAAGA 57.239 45.000 0.00 0.00 36.97 3.02
9200 10670 3.201290 AGATATGCTTCCGCTGAACAAG 58.799 45.455 0.00 0.00 36.97 3.16
9201 10671 3.118629 AGAGATATGCTTCCGCTGAACAA 60.119 43.478 0.00 0.00 36.97 2.83
9202 10672 2.432146 AGAGATATGCTTCCGCTGAACA 59.568 45.455 0.00 0.00 36.97 3.18
9203 10673 3.056304 GAGAGATATGCTTCCGCTGAAC 58.944 50.000 0.00 0.00 36.97 3.18
9204 10674 2.036475 GGAGAGATATGCTTCCGCTGAA 59.964 50.000 0.00 0.00 36.97 3.02
9205 10675 1.615883 GGAGAGATATGCTTCCGCTGA 59.384 52.381 0.00 0.00 36.97 4.26
9206 10676 1.668337 CGGAGAGATATGCTTCCGCTG 60.668 57.143 0.00 0.00 36.97 5.18
9207 10677 0.600557 CGGAGAGATATGCTTCCGCT 59.399 55.000 0.00 0.00 36.97 5.52
9298 10774 0.603707 ACAAGGCATCACACTGTCGG 60.604 55.000 0.00 0.00 0.00 4.79
9384 10872 2.639065 GAGACGACATATGGCCCAAAA 58.361 47.619 7.80 0.00 0.00 2.44
9525 11015 2.176273 GTATCTGCCTGCCAGTGCG 61.176 63.158 0.00 0.00 42.38 5.34
9540 11030 5.877012 GGTATCAGATGATGGATTTGCGTAT 59.123 40.000 5.58 0.00 36.05 3.06
9637 11127 1.351017 TCCTCACCTGAACCAACCATC 59.649 52.381 0.00 0.00 0.00 3.51
9743 11234 1.369091 CCGTCAACCTGCCATGTAGC 61.369 60.000 0.00 0.00 0.00 3.58
9832 11323 2.076863 CTCCCTAAAGAAACCACGCAG 58.923 52.381 0.00 0.00 0.00 5.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.