Multiple sequence alignment - TraesCS1B01G203600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G203600 chr1B 100.000 4628 0 0 2070 6697 367438271 367442898 0.000000e+00 8547.0
1 TraesCS1B01G203600 chr1B 100.000 1734 0 0 1 1734 367436202 367437935 0.000000e+00 3203.0
2 TraesCS1B01G203600 chr1B 75.232 755 121 49 3893 4606 206033480 206034209 1.410000e-76 298.0
3 TraesCS1B01G203600 chr1B 92.647 136 10 0 6562 6697 577966443 577966308 5.300000e-46 196.0
4 TraesCS1B01G203600 chr1D 96.031 4434 126 19 2092 6507 232345512 232349913 0.000000e+00 7167.0
5 TraesCS1B01G203600 chr1D 93.785 901 32 6 835 1734 232344180 232345057 0.000000e+00 1332.0
6 TraesCS1B01G203600 chr1D 75.033 753 124 46 3893 4606 131148070 131148797 2.360000e-74 291.0
7 TraesCS1B01G203600 chr1D 86.854 213 18 7 67 269 232176539 232176751 5.220000e-56 230.0
8 TraesCS1B01G203600 chr1D 91.971 137 11 0 6561 6697 309071964 309072100 6.850000e-45 193.0
9 TraesCS1B01G203600 chr1D 79.585 289 35 2 479 743 232229311 232229599 1.150000e-42 185.0
10 TraesCS1B01G203600 chr1D 91.304 69 6 0 265 333 232229245 232229313 1.990000e-15 95.3
11 TraesCS1B01G203600 chr1A 95.928 1719 58 6 4660 6367 315835791 315834074 0.000000e+00 2776.0
12 TraesCS1B01G203600 chr1A 97.368 1634 31 7 3035 4661 315837532 315835904 0.000000e+00 2769.0
13 TraesCS1B01G203600 chr1A 95.847 915 30 7 2070 2982 315838436 315837528 0.000000e+00 1472.0
14 TraesCS1B01G203600 chr1A 94.900 804 27 6 835 1638 315839490 315838701 0.000000e+00 1245.0
15 TraesCS1B01G203600 chr1A 87.464 343 33 6 1 333 315841591 315841249 2.930000e-103 387.0
16 TraesCS1B01G203600 chr1A 82.576 396 36 10 478 844 315841252 315840861 1.080000e-82 318.0
17 TraesCS1B01G203600 chr1A 75.499 751 124 42 3893 4606 157831444 157830717 5.040000e-81 313.0
18 TraesCS1B01G203600 chr1A 95.683 139 4 2 6427 6563 315834130 315833992 8.740000e-54 222.0
19 TraesCS1B01G203600 chr1A 96.078 102 3 1 1633 1734 315838603 315838503 1.490000e-36 165.0
20 TraesCS1B01G203600 chr7B 92.701 137 10 0 6561 6697 389308627 389308491 1.470000e-46 198.0
21 TraesCS1B01G203600 chr5B 92.647 136 10 0 6562 6697 315895004 315894869 5.300000e-46 196.0
22 TraesCS1B01G203600 chr2B 92.647 136 10 0 6562 6697 571527976 571527841 5.300000e-46 196.0
23 TraesCS1B01G203600 chr2B 91.971 137 11 0 6561 6697 500705098 500705234 6.850000e-45 193.0
24 TraesCS1B01G203600 chr5D 91.429 140 12 0 6558 6697 129481341 129481480 6.850000e-45 193.0
25 TraesCS1B01G203600 chr3A 91.971 137 11 0 6561 6697 596103650 596103514 6.850000e-45 193.0
26 TraesCS1B01G203600 chr4A 90.210 143 14 0 6550 6692 514356132 514356274 3.190000e-43 187.0
27 TraesCS1B01G203600 chr7A 83.916 143 12 2 336 467 680412008 680412150 7.050000e-25 126.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G203600 chr1B 367436202 367442898 6696 False 5875.00 8547 100.0000 1 6697 2 chr1B.!!$F2 6696
1 TraesCS1B01G203600 chr1B 206033480 206034209 729 False 298.00 298 75.2320 3893 4606 1 chr1B.!!$F1 713
2 TraesCS1B01G203600 chr1D 232344180 232349913 5733 False 4249.50 7167 94.9080 835 6507 2 chr1D.!!$F5 5672
3 TraesCS1B01G203600 chr1D 131148070 131148797 727 False 291.00 291 75.0330 3893 4606 1 chr1D.!!$F1 713
4 TraesCS1B01G203600 chr1A 315833992 315841591 7599 True 1169.25 2776 93.2305 1 6563 8 chr1A.!!$R2 6562
5 TraesCS1B01G203600 chr1A 157830717 157831444 727 True 313.00 313 75.4990 3893 4606 1 chr1A.!!$R1 713

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
423 434 0.107066 TGATGCATGGACGGCTTGAT 60.107 50.000 2.46 0.00 0.00 2.57 F
575 586 0.174845 TTCGGAGTACATGGAAGCGG 59.825 55.000 0.00 0.00 0.00 5.52 F
653 687 0.317854 GGAAACGAACTTGTGGCAGC 60.318 55.000 0.00 0.00 0.00 5.25 F
948 2368 1.214992 AACCCTCTCCCCACAATCCC 61.215 60.000 0.00 0.00 0.00 3.85 F
2397 4020 0.036022 GGTTGCTGAAGAGCTCCAGT 59.964 55.000 17.84 2.26 46.39 4.00 F
2398 4021 1.544314 GGTTGCTGAAGAGCTCCAGTT 60.544 52.381 17.84 4.35 46.39 3.16 F
2439 4062 1.944024 CACACTGCCCTTTTCGTGTTA 59.056 47.619 0.00 0.00 38.44 2.41 F
3673 5296 0.255890 TGCCCTGAGACCTAATTGGC 59.744 55.000 0.00 0.00 40.22 4.52 F
4041 5672 3.119637 GGTGTGGGATGTATTTTCCAACG 60.120 47.826 0.00 0.00 39.68 4.10 F
5444 7214 2.289882 TGGTCATTTGCAGGAGAGTGAG 60.290 50.000 0.00 0.00 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1319 2739 1.073923 GATGCCCGATGGGAATTACCT 59.926 52.381 8.55 0.00 42.34 3.08 R
1665 3189 1.466167 CACTACAGAATGCCTGCACAC 59.534 52.381 0.00 0.00 46.81 3.82 R
2398 4021 4.095782 GTGGCTTCAGAAACAACTTACACA 59.904 41.667 0.00 0.00 0.00 3.72 R
2669 4292 0.820226 CCTTCTGCTCGGATGTCTCA 59.180 55.000 0.00 0.00 0.00 3.27 R
3654 5277 0.255890 GCCAATTAGGTCTCAGGGCA 59.744 55.000 0.00 0.00 39.66 5.36 R
3673 5296 3.088789 ACTACTCACCAGTGGACCTAG 57.911 52.381 18.40 10.68 34.72 3.02 R
3995 5620 3.756963 CCTTACCAGGGAACTTGCTTAAC 59.243 47.826 0.00 0.00 40.21 2.01 R
5429 7199 0.035881 CAGCCTCACTCTCCTGCAAA 59.964 55.000 0.00 0.00 0.00 3.68 R
5630 7400 1.061424 TCATATGCCTCCCCTTCCTCA 60.061 52.381 0.00 0.00 0.00 3.86 R
6338 8113 0.033920 CCCCAAAAGGCAAGTTCAGC 59.966 55.000 0.00 0.00 0.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 1.942657 CCATGCTCAGATAAACCACCG 59.057 52.381 0.00 0.00 0.00 4.94
61 62 2.632377 CATGCTCAGATAAACCACCGT 58.368 47.619 0.00 0.00 0.00 4.83
62 63 2.851263 TGCTCAGATAAACCACCGTT 57.149 45.000 0.00 0.00 0.00 4.44
65 66 2.673368 GCTCAGATAAACCACCGTTCAG 59.327 50.000 0.00 0.00 0.00 3.02
92 93 5.815581 TGTATAAGCATATCCATCCAACCC 58.184 41.667 0.00 0.00 0.00 4.11
97 98 2.748132 GCATATCCATCCAACCCGACAA 60.748 50.000 0.00 0.00 0.00 3.18
141 144 0.827507 ACACACCCAATGCCAGTTCC 60.828 55.000 0.00 0.00 0.00 3.62
176 185 3.435186 GAAGGCCCTGACAAGCGC 61.435 66.667 0.00 0.00 0.00 5.92
202 211 1.442857 GGCACGTCTCGTCTGTCTG 60.443 63.158 0.00 0.00 38.32 3.51
203 212 1.574925 GCACGTCTCGTCTGTCTGA 59.425 57.895 0.00 0.00 38.32 3.27
227 236 4.712425 CGCCTTGCCTTGCAGTGC 62.712 66.667 8.58 8.58 40.61 4.40
238 247 4.389576 GCAGTGCGCGAACCCAAG 62.390 66.667 15.21 2.68 0.00 3.61
252 263 0.242825 CCCAAGTGACTTAGACGCGA 59.757 55.000 15.93 0.00 0.00 5.87
256 267 0.109873 AGTGACTTAGACGCGAACCG 60.110 55.000 15.93 0.00 44.21 4.44
257 268 1.069378 GTGACTTAGACGCGAACCGG 61.069 60.000 15.93 0.00 42.52 5.28
269 280 4.941309 AACCGGCGGTGTCAACCC 62.941 66.667 34.87 0.00 44.42 4.11
316 327 2.435938 GGGCCTTGTCGATTGCGA 60.436 61.111 0.84 0.00 45.71 5.10
329 340 4.218265 TCGATTGCGACATTTGAACAAAG 58.782 39.130 6.18 1.97 42.51 2.77
330 341 3.181550 CGATTGCGACATTTGAACAAAGC 60.182 43.478 6.18 4.68 40.82 3.51
331 342 2.132740 TGCGACATTTGAACAAAGCC 57.867 45.000 6.18 0.00 33.32 4.35
332 343 1.269517 TGCGACATTTGAACAAAGCCC 60.270 47.619 6.18 0.00 33.32 5.19
333 344 1.934849 GCGACATTTGAACAAAGCCCC 60.935 52.381 6.18 0.00 33.32 5.80
334 345 1.665735 CGACATTTGAACAAAGCCCCG 60.666 52.381 6.18 3.86 33.32 5.73
335 346 1.611491 GACATTTGAACAAAGCCCCGA 59.389 47.619 6.18 0.00 33.32 5.14
336 347 2.035321 GACATTTGAACAAAGCCCCGAA 59.965 45.455 6.18 0.00 33.32 4.30
337 348 2.432510 ACATTTGAACAAAGCCCCGAAA 59.567 40.909 6.18 0.00 33.32 3.46
338 349 2.588027 TTTGAACAAAGCCCCGAAAC 57.412 45.000 0.00 0.00 0.00 2.78
339 350 0.382515 TTGAACAAAGCCCCGAAACG 59.617 50.000 0.00 0.00 0.00 3.60
340 351 0.464013 TGAACAAAGCCCCGAAACGA 60.464 50.000 0.00 0.00 0.00 3.85
341 352 0.664224 GAACAAAGCCCCGAAACGAA 59.336 50.000 0.00 0.00 0.00 3.85
342 353 1.065851 GAACAAAGCCCCGAAACGAAA 59.934 47.619 0.00 0.00 0.00 3.46
343 354 0.382873 ACAAAGCCCCGAAACGAAAC 59.617 50.000 0.00 0.00 0.00 2.78
344 355 0.666374 CAAAGCCCCGAAACGAAACT 59.334 50.000 0.00 0.00 0.00 2.66
345 356 1.874872 CAAAGCCCCGAAACGAAACTA 59.125 47.619 0.00 0.00 0.00 2.24
346 357 1.516161 AAGCCCCGAAACGAAACTAC 58.484 50.000 0.00 0.00 0.00 2.73
347 358 0.683412 AGCCCCGAAACGAAACTACT 59.317 50.000 0.00 0.00 0.00 2.57
348 359 0.794473 GCCCCGAAACGAAACTACTG 59.206 55.000 0.00 0.00 0.00 2.74
349 360 1.435577 CCCCGAAACGAAACTACTGG 58.564 55.000 0.00 0.00 0.00 4.00
350 361 1.435577 CCCGAAACGAAACTACTGGG 58.564 55.000 0.00 0.00 0.00 4.45
351 362 0.794473 CCGAAACGAAACTACTGGGC 59.206 55.000 0.00 0.00 0.00 5.36
352 363 0.437295 CGAAACGAAACTACTGGGCG 59.563 55.000 0.00 0.00 0.00 6.13
353 364 0.794473 GAAACGAAACTACTGGGCGG 59.206 55.000 0.00 0.00 0.00 6.13
354 365 0.393820 AAACGAAACTACTGGGCGGA 59.606 50.000 0.00 0.00 0.00 5.54
355 366 0.320160 AACGAAACTACTGGGCGGAC 60.320 55.000 0.00 0.00 0.00 4.79
356 367 1.804326 CGAAACTACTGGGCGGACG 60.804 63.158 0.00 0.00 0.00 4.79
357 368 1.588082 GAAACTACTGGGCGGACGA 59.412 57.895 0.00 0.00 0.00 4.20
358 369 0.735287 GAAACTACTGGGCGGACGAC 60.735 60.000 0.00 0.00 0.00 4.34
372 383 4.717629 CGACGAGCACCAGCCGAA 62.718 66.667 0.00 0.00 43.56 4.30
373 384 3.112709 GACGAGCACCAGCCGAAC 61.113 66.667 0.00 0.00 43.56 3.95
374 385 3.575351 GACGAGCACCAGCCGAACT 62.575 63.158 0.00 0.00 43.56 3.01
375 386 2.209064 GACGAGCACCAGCCGAACTA 62.209 60.000 0.00 0.00 43.56 2.24
376 387 1.141881 CGAGCACCAGCCGAACTAT 59.858 57.895 0.00 0.00 43.56 2.12
377 388 0.872021 CGAGCACCAGCCGAACTATC 60.872 60.000 0.00 0.00 43.56 2.08
378 389 0.175760 GAGCACCAGCCGAACTATCA 59.824 55.000 0.00 0.00 43.56 2.15
379 390 0.108138 AGCACCAGCCGAACTATCAC 60.108 55.000 0.00 0.00 43.56 3.06
380 391 1.421410 GCACCAGCCGAACTATCACG 61.421 60.000 0.00 0.00 33.58 4.35
381 392 0.172578 CACCAGCCGAACTATCACGA 59.827 55.000 0.00 0.00 0.00 4.35
382 393 1.112113 ACCAGCCGAACTATCACGAT 58.888 50.000 0.00 0.00 0.00 3.73
383 394 1.202417 ACCAGCCGAACTATCACGATG 60.202 52.381 0.00 0.00 0.00 3.84
384 395 0.855349 CAGCCGAACTATCACGATGC 59.145 55.000 0.00 0.00 0.00 3.91
385 396 0.459899 AGCCGAACTATCACGATGCA 59.540 50.000 0.00 0.00 0.00 3.96
386 397 1.069204 AGCCGAACTATCACGATGCAT 59.931 47.619 0.00 0.00 0.00 3.96
387 398 1.193203 GCCGAACTATCACGATGCATG 59.807 52.381 2.46 0.00 0.00 4.06
388 399 2.742774 CCGAACTATCACGATGCATGA 58.257 47.619 2.46 0.00 0.00 3.07
389 400 3.320626 CCGAACTATCACGATGCATGAT 58.679 45.455 2.46 5.05 40.02 2.45
390 401 3.742882 CCGAACTATCACGATGCATGATT 59.257 43.478 2.46 0.00 37.89 2.57
391 402 4.376717 CCGAACTATCACGATGCATGATTG 60.377 45.833 2.46 6.30 37.89 2.67
392 403 4.445385 CGAACTATCACGATGCATGATTGA 59.555 41.667 2.46 3.74 37.89 2.57
393 404 5.050837 CGAACTATCACGATGCATGATTGAA 60.051 40.000 2.46 0.00 37.89 2.69
394 405 5.663795 ACTATCACGATGCATGATTGAAC 57.336 39.130 2.46 0.00 37.89 3.18
395 406 3.597377 ATCACGATGCATGATTGAACG 57.403 42.857 2.46 1.34 32.77 3.95
396 407 2.615869 TCACGATGCATGATTGAACGA 58.384 42.857 2.46 0.00 0.00 3.85
397 408 2.348362 TCACGATGCATGATTGAACGAC 59.652 45.455 2.46 0.00 0.00 4.34
398 409 1.665679 ACGATGCATGATTGAACGACC 59.334 47.619 2.46 0.00 0.00 4.79
399 410 1.003545 CGATGCATGATTGAACGACCC 60.004 52.381 2.46 0.00 0.00 4.46
400 411 2.292267 GATGCATGATTGAACGACCCT 58.708 47.619 2.46 0.00 0.00 4.34
401 412 3.466836 GATGCATGATTGAACGACCCTA 58.533 45.455 2.46 0.00 0.00 3.53
402 413 2.627945 TGCATGATTGAACGACCCTAC 58.372 47.619 0.00 0.00 0.00 3.18
403 414 1.940613 GCATGATTGAACGACCCTACC 59.059 52.381 0.00 0.00 0.00 3.18
404 415 2.420129 GCATGATTGAACGACCCTACCT 60.420 50.000 0.00 0.00 0.00 3.08
405 416 3.198068 CATGATTGAACGACCCTACCTG 58.802 50.000 0.00 0.00 0.00 4.00
406 417 2.531771 TGATTGAACGACCCTACCTGA 58.468 47.619 0.00 0.00 0.00 3.86
407 418 3.104512 TGATTGAACGACCCTACCTGAT 58.895 45.455 0.00 0.00 0.00 2.90
408 419 3.118775 TGATTGAACGACCCTACCTGATG 60.119 47.826 0.00 0.00 0.00 3.07
409 420 0.535335 TGAACGACCCTACCTGATGC 59.465 55.000 0.00 0.00 0.00 3.91
410 421 0.535335 GAACGACCCTACCTGATGCA 59.465 55.000 0.00 0.00 0.00 3.96
411 422 1.139058 GAACGACCCTACCTGATGCAT 59.861 52.381 0.00 0.00 0.00 3.96
412 423 0.465705 ACGACCCTACCTGATGCATG 59.534 55.000 2.46 0.00 0.00 4.06
413 424 0.250038 CGACCCTACCTGATGCATGG 60.250 60.000 2.46 1.90 0.00 3.66
414 425 1.131638 GACCCTACCTGATGCATGGA 58.868 55.000 2.46 0.00 0.00 3.41
415 426 0.839946 ACCCTACCTGATGCATGGAC 59.160 55.000 2.46 0.00 0.00 4.02
416 427 0.250038 CCCTACCTGATGCATGGACG 60.250 60.000 2.46 0.00 0.00 4.79
417 428 0.250038 CCTACCTGATGCATGGACGG 60.250 60.000 2.46 2.60 0.00 4.79
418 429 0.882042 CTACCTGATGCATGGACGGC 60.882 60.000 2.46 0.00 0.00 5.68
419 430 1.337384 TACCTGATGCATGGACGGCT 61.337 55.000 2.46 0.00 0.00 5.52
420 431 1.452651 CCTGATGCATGGACGGCTT 60.453 57.895 2.46 0.00 0.00 4.35
421 432 1.721664 CCTGATGCATGGACGGCTTG 61.722 60.000 2.46 0.00 0.00 4.01
422 433 0.745486 CTGATGCATGGACGGCTTGA 60.745 55.000 2.46 0.00 0.00 3.02
423 434 0.107066 TGATGCATGGACGGCTTGAT 60.107 50.000 2.46 0.00 0.00 2.57
424 435 0.309922 GATGCATGGACGGCTTGATG 59.690 55.000 2.46 0.00 0.00 3.07
425 436 0.394762 ATGCATGGACGGCTTGATGT 60.395 50.000 0.00 0.00 0.00 3.06
426 437 1.307355 TGCATGGACGGCTTGATGTG 61.307 55.000 0.00 0.00 0.00 3.21
427 438 1.308069 GCATGGACGGCTTGATGTGT 61.308 55.000 0.00 0.00 0.00 3.72
428 439 2.011548 GCATGGACGGCTTGATGTGTA 61.012 52.381 0.00 0.00 0.00 2.90
429 440 1.665679 CATGGACGGCTTGATGTGTAC 59.334 52.381 0.00 0.00 0.00 2.90
430 441 0.389296 TGGACGGCTTGATGTGTACG 60.389 55.000 0.00 0.00 0.00 3.67
431 442 1.082117 GGACGGCTTGATGTGTACGG 61.082 60.000 0.00 0.00 0.00 4.02
432 443 0.389426 GACGGCTTGATGTGTACGGT 60.389 55.000 0.00 0.00 0.00 4.83
433 444 0.389426 ACGGCTTGATGTGTACGGTC 60.389 55.000 0.00 0.00 0.00 4.79
434 445 1.410737 CGGCTTGATGTGTACGGTCG 61.411 60.000 0.00 0.00 0.00 4.79
435 446 0.389426 GGCTTGATGTGTACGGTCGT 60.389 55.000 0.69 0.69 0.00 4.34
436 447 0.989890 GCTTGATGTGTACGGTCGTC 59.010 55.000 0.00 0.00 0.00 4.20
437 448 1.402456 GCTTGATGTGTACGGTCGTCT 60.402 52.381 0.00 0.00 0.00 4.18
438 449 2.251040 CTTGATGTGTACGGTCGTCTG 58.749 52.381 0.00 0.00 0.00 3.51
439 450 1.525941 TGATGTGTACGGTCGTCTGA 58.474 50.000 0.00 0.00 0.00 3.27
440 451 1.881324 TGATGTGTACGGTCGTCTGAA 59.119 47.619 0.00 0.00 0.00 3.02
441 452 2.293955 TGATGTGTACGGTCGTCTGAAA 59.706 45.455 0.00 0.00 0.00 2.69
442 453 2.867287 TGTGTACGGTCGTCTGAAAA 57.133 45.000 0.00 0.00 0.00 2.29
443 454 3.374220 TGTGTACGGTCGTCTGAAAAT 57.626 42.857 0.00 0.00 0.00 1.82
444 455 3.311106 TGTGTACGGTCGTCTGAAAATC 58.689 45.455 0.00 0.00 0.00 2.17
445 456 3.243468 TGTGTACGGTCGTCTGAAAATCA 60.243 43.478 0.00 0.00 0.00 2.57
446 457 3.924686 GTGTACGGTCGTCTGAAAATCAT 59.075 43.478 0.00 0.00 0.00 2.45
447 458 4.031426 GTGTACGGTCGTCTGAAAATCATC 59.969 45.833 0.00 0.00 0.00 2.92
448 459 2.618053 ACGGTCGTCTGAAAATCATCC 58.382 47.619 0.00 0.00 0.00 3.51
449 460 2.028476 ACGGTCGTCTGAAAATCATCCA 60.028 45.455 0.00 0.00 0.00 3.41
450 461 3.000041 CGGTCGTCTGAAAATCATCCAA 59.000 45.455 0.00 0.00 0.00 3.53
451 462 3.181520 CGGTCGTCTGAAAATCATCCAAC 60.182 47.826 0.00 0.00 0.00 3.77
452 463 3.751175 GGTCGTCTGAAAATCATCCAACA 59.249 43.478 0.00 0.00 0.00 3.33
453 464 4.396166 GGTCGTCTGAAAATCATCCAACAT 59.604 41.667 0.00 0.00 0.00 2.71
454 465 5.584649 GGTCGTCTGAAAATCATCCAACATA 59.415 40.000 0.00 0.00 0.00 2.29
455 466 6.260936 GGTCGTCTGAAAATCATCCAACATAT 59.739 38.462 0.00 0.00 0.00 1.78
456 467 7.441157 GGTCGTCTGAAAATCATCCAACATATA 59.559 37.037 0.00 0.00 0.00 0.86
457 468 8.993121 GTCGTCTGAAAATCATCCAACATATAT 58.007 33.333 0.00 0.00 0.00 0.86
458 469 9.208022 TCGTCTGAAAATCATCCAACATATATC 57.792 33.333 0.00 0.00 0.00 1.63
459 470 8.164790 CGTCTGAAAATCATCCAACATATATCG 58.835 37.037 0.00 0.00 0.00 2.92
460 471 8.993121 GTCTGAAAATCATCCAACATATATCGT 58.007 33.333 0.00 0.00 0.00 3.73
461 472 8.992073 TCTGAAAATCATCCAACATATATCGTG 58.008 33.333 0.00 0.00 0.00 4.35
462 473 8.675705 TGAAAATCATCCAACATATATCGTGT 57.324 30.769 0.00 0.00 0.00 4.49
463 474 8.558700 TGAAAATCATCCAACATATATCGTGTG 58.441 33.333 0.00 0.00 0.00 3.82
464 475 8.450578 AAAATCATCCAACATATATCGTGTGT 57.549 30.769 0.00 0.00 33.07 3.72
465 476 7.425577 AATCATCCAACATATATCGTGTGTG 57.574 36.000 0.00 0.00 31.96 3.82
466 477 5.912892 TCATCCAACATATATCGTGTGTGT 58.087 37.500 0.00 0.00 31.96 3.72
467 478 7.045126 TCATCCAACATATATCGTGTGTGTA 57.955 36.000 0.00 0.00 31.96 2.90
468 479 7.145323 TCATCCAACATATATCGTGTGTGTAG 58.855 38.462 0.00 0.00 31.96 2.74
469 480 6.459670 TCCAACATATATCGTGTGTGTAGT 57.540 37.500 0.00 0.00 31.96 2.73
470 481 7.571080 TCCAACATATATCGTGTGTGTAGTA 57.429 36.000 0.00 0.00 31.96 1.82
471 482 7.645402 TCCAACATATATCGTGTGTGTAGTAG 58.355 38.462 0.00 0.00 31.96 2.57
472 483 6.362551 CCAACATATATCGTGTGTGTAGTAGC 59.637 42.308 0.00 0.00 31.96 3.58
473 484 6.628919 ACATATATCGTGTGTGTAGTAGCA 57.371 37.500 0.00 0.00 30.22 3.49
474 485 6.436261 ACATATATCGTGTGTGTAGTAGCAC 58.564 40.000 0.00 0.00 39.65 4.40
475 486 6.262496 ACATATATCGTGTGTGTAGTAGCACT 59.738 38.462 6.41 0.00 39.89 4.40
476 487 2.983402 TCGTGTGTGTAGTAGCACTC 57.017 50.000 6.41 0.00 39.89 3.51
481 492 1.141234 GTGTAGTAGCACTCGCCCC 59.859 63.158 0.00 0.00 39.83 5.80
486 497 3.766691 TAGCACTCGCCCCGGAAC 61.767 66.667 0.73 0.00 39.83 3.62
504 515 2.528797 CGAGGACGTGGAACTTTGG 58.471 57.895 0.00 0.00 34.56 3.28
516 527 4.047059 CTTTGGCACTGGCAGCGG 62.047 66.667 15.89 8.50 43.71 5.52
556 567 1.449601 CACAAATAGGTCCGCCGCT 60.450 57.895 0.00 0.00 40.50 5.52
571 582 3.733236 CGCTTCGGAGTACATGGAA 57.267 52.632 0.00 0.00 0.00 3.53
572 583 1.560923 CGCTTCGGAGTACATGGAAG 58.439 55.000 12.69 12.69 39.05 3.46
574 585 1.560923 CTTCGGAGTACATGGAAGCG 58.439 55.000 0.00 0.00 30.68 4.68
575 586 0.174845 TTCGGAGTACATGGAAGCGG 59.825 55.000 0.00 0.00 0.00 5.52
587 598 4.107051 AAGCGGCGCTCATTGCAC 62.107 61.111 36.44 0.08 38.25 4.57
594 605 2.169789 CGCTCATTGCACGGAGGAG 61.170 63.158 13.94 5.24 43.06 3.69
598 609 4.115199 ATTGCACGGAGGAGGGCC 62.115 66.667 0.00 0.00 0.00 5.80
621 655 3.148279 GGAGGTGACCGAGGCGAT 61.148 66.667 0.00 0.00 0.00 4.58
649 683 3.113260 AGAGAGGAAACGAACTTGTGG 57.887 47.619 0.00 0.00 0.00 4.17
653 687 0.317854 GGAAACGAACTTGTGGCAGC 60.318 55.000 0.00 0.00 0.00 5.25
661 696 2.974489 CTTGTGGCAGCTGGCGAAG 61.974 63.158 32.12 29.18 46.16 3.79
719 754 2.589014 CGAGAGGAAGCAAATTTGTGC 58.411 47.619 19.03 7.03 45.28 4.57
738 773 2.125753 GAGTGCGGACTCCAGCAG 60.126 66.667 25.07 0.00 44.70 4.24
758 793 2.872001 GCGAGCACACGAGACGAG 60.872 66.667 0.00 0.00 35.09 4.18
762 797 1.853114 GAGCACACGAGACGAGACCA 61.853 60.000 0.00 0.00 0.00 4.02
765 800 2.176055 CACGAGACGAGACCACCG 59.824 66.667 0.00 0.00 0.00 4.94
788 823 2.232298 GAGGGAGAGGCAACCGACAG 62.232 65.000 0.00 0.00 37.17 3.51
831 871 2.436109 CCCACAGGTCAGGGTTGG 59.564 66.667 0.00 0.00 40.34 3.77
891 2311 1.405463 TCCATCGAATCAGTGACGGAG 59.595 52.381 0.00 0.00 0.00 4.63
948 2368 1.214992 AACCCTCTCCCCACAATCCC 61.215 60.000 0.00 0.00 0.00 3.85
973 2393 2.840066 AATCTCCTCCGAGCTCGCG 61.840 63.158 30.49 22.26 35.94 5.87
978 2398 2.409243 CTCCGAGCTCGCGAATCA 59.591 61.111 30.49 8.10 38.18 2.57
979 2399 1.656875 CTCCGAGCTCGCGAATCAG 60.657 63.158 30.49 14.86 38.18 2.90
980 2400 3.326210 CCGAGCTCGCGAATCAGC 61.326 66.667 30.49 10.46 38.18 4.26
981 2401 2.580597 CGAGCTCGCGAATCAGCA 60.581 61.111 25.07 0.00 38.18 4.41
982 2402 2.575111 CGAGCTCGCGAATCAGCAG 61.575 63.158 25.07 9.36 38.18 4.24
983 2403 2.869256 GAGCTCGCGAATCAGCAGC 61.869 63.158 18.62 12.74 39.66 5.25
984 2404 3.934684 GCTCGCGAATCAGCAGCC 61.935 66.667 11.33 0.00 36.22 4.85
985 2405 3.624300 CTCGCGAATCAGCAGCCG 61.624 66.667 11.33 0.00 36.85 5.52
1112 2532 2.824489 GCTGGTAAGCCTTCGCCC 60.824 66.667 0.00 0.00 44.22 6.13
1160 2580 1.589196 CGCCTTCTCCGTTCGATCC 60.589 63.158 0.00 0.00 0.00 3.36
1172 2592 3.003482 CCGTTCGATCCGTCTTTCTATCT 59.997 47.826 4.59 0.00 0.00 1.98
1193 2613 4.152938 TCTGAGATTTGATTCTGTGTTGCG 59.847 41.667 0.00 0.00 0.00 4.85
1319 2739 1.234615 GCAAGTTGCCGGCTTACTCA 61.235 55.000 29.70 1.94 37.42 3.41
1334 2754 4.632153 CTTACTCAGGTAATTCCCATCGG 58.368 47.826 0.00 0.00 37.30 4.18
1350 2770 4.082571 CCCATCGGGCATCTTATCAATTTC 60.083 45.833 0.00 0.00 35.35 2.17
1414 2834 1.496060 ATCCCCATCGTGCAACTCTA 58.504 50.000 0.00 0.00 31.75 2.43
1479 2899 1.523154 GGTTTGCAGGGATGTCGCAA 61.523 55.000 0.00 0.00 43.52 4.85
1512 2932 4.767255 GCAGAGCCTGGTGACCCG 62.767 72.222 0.00 0.00 31.21 5.28
1607 3028 3.113745 CGGGCATGGACATTCTGC 58.886 61.111 0.00 0.00 35.16 4.26
1617 3038 1.548973 GACATTCTGCGGCGGTATCG 61.549 60.000 9.78 0.00 39.81 2.92
2203 3825 6.919115 TGTGATTGATCCAATGAAATAATGCG 59.081 34.615 0.00 0.00 33.90 4.73
2397 4020 0.036022 GGTTGCTGAAGAGCTCCAGT 59.964 55.000 17.84 2.26 46.39 4.00
2398 4021 1.544314 GGTTGCTGAAGAGCTCCAGTT 60.544 52.381 17.84 4.35 46.39 3.16
2439 4062 1.944024 CACACTGCCCTTTTCGTGTTA 59.056 47.619 0.00 0.00 38.44 2.41
2440 4063 2.552315 CACACTGCCCTTTTCGTGTTAT 59.448 45.455 0.00 0.00 38.44 1.89
2541 4164 7.685481 TGGAGATCCATACAAAACACTCTTTA 58.315 34.615 0.00 0.00 42.01 1.85
2621 4244 8.602328 TGAAAACAGTGCAATCAATAAGTTTTG 58.398 29.630 13.29 0.00 37.86 2.44
2669 4292 2.162681 GTGAAACTGTTGCAGGGCTAT 58.837 47.619 0.26 0.00 35.51 2.97
2746 4369 7.933215 AAAGGGTAAGTGTACATGGTAAATC 57.067 36.000 0.00 0.00 31.21 2.17
2812 4435 7.491696 AGTTATTCTGGTTGCTAAACTATCGTC 59.508 37.037 0.00 0.00 36.48 4.20
2836 4459 4.263025 GGTGAAATCTGGGGAAAATTTGCT 60.263 41.667 0.00 0.00 0.00 3.91
2858 4481 5.240403 GCTTTTGCTGCCTTATATAGCTTCT 59.760 40.000 0.00 0.00 43.35 2.85
2865 4488 4.103153 TGCCTTATATAGCTTCTTGGCAGT 59.897 41.667 11.83 0.00 43.29 4.40
2889 4512 3.466836 CTGTCACAAAGTGCTACTTGGA 58.533 45.455 9.53 3.60 38.66 3.53
2921 4544 2.854963 TCTGCATGTTCTCTTGTTGCT 58.145 42.857 0.00 0.00 34.47 3.91
2970 4593 6.110411 ACCAAGATAGAAAGAACCTTCGAA 57.890 37.500 0.00 0.00 0.00 3.71
2985 4608 8.842280 AGAACCTTCGAAACACAAAACATAATA 58.158 29.630 0.00 0.00 0.00 0.98
3016 4639 7.798982 GCTGTTAGTTAGCTTTGTTCTGTTTAG 59.201 37.037 0.00 0.00 38.14 1.85
3075 4698 7.716768 ACTTTTTCCAAAGAACGTTGAAAAA 57.283 28.000 23.50 23.50 41.97 1.94
3091 4714 8.194769 ACGTTGAAAAACTATCTTTCCATGTTT 58.805 29.630 0.00 0.00 32.79 2.83
3168 4791 9.669353 ATTATATTTTCTCTTTGCTGCGTATTG 57.331 29.630 0.00 0.00 0.00 1.90
3209 4832 9.614792 GGGTAATATATCGAATAGGCATCTTTT 57.385 33.333 0.00 0.00 0.00 2.27
3227 4850 7.567458 CATCTTTTAATTTTGGGGGTCATGAT 58.433 34.615 0.00 0.00 0.00 2.45
3243 4866 4.818546 GTCATGATACCATTTCTCCCTGTG 59.181 45.833 0.00 0.00 0.00 3.66
3419 5042 5.689383 TCTCTGGTAAAAGAAATGTGCAC 57.311 39.130 10.75 10.75 0.00 4.57
3654 5277 3.999663 GCTTATCTGCAGGCGATTTCTAT 59.000 43.478 15.13 0.00 0.00 1.98
3673 5296 0.255890 TGCCCTGAGACCTAATTGGC 59.744 55.000 0.00 0.00 40.22 4.52
3784 5407 7.721402 AGGAAACAACACAAAAGTATAATGCA 58.279 30.769 0.00 0.00 0.00 3.96
3790 5413 7.706179 ACAACACAAAAGTATAATGCATATGGC 59.294 33.333 0.00 0.00 45.13 4.40
3831 5456 8.772250 AGAGTTGAAGAGTATTCCATTTCCATA 58.228 33.333 0.00 0.00 0.00 2.74
4041 5672 3.119637 GGTGTGGGATGTATTTTCCAACG 60.120 47.826 0.00 0.00 39.68 4.10
4233 5883 9.860898 AGTATTTCTTAATTTGAATGCAGGTTC 57.139 29.630 0.00 0.00 0.00 3.62
5022 6792 4.350368 TTGCTCACTGTTACCTTGATGA 57.650 40.909 0.00 0.00 0.00 2.92
5330 7100 3.790437 CGCTCTCATGGCAGGGGT 61.790 66.667 0.00 0.00 0.00 4.95
5444 7214 2.289882 TGGTCATTTGCAGGAGAGTGAG 60.290 50.000 0.00 0.00 0.00 3.51
5501 7271 2.708051 CATGAGCACCACAGAAGTCAT 58.292 47.619 0.00 0.00 0.00 3.06
5677 7447 2.706190 GGGACTACCAGCATATCCAAGT 59.294 50.000 0.00 0.00 39.85 3.16
5679 7449 3.495100 GGACTACCAGCATATCCAAGTGG 60.495 52.174 0.00 0.00 35.97 4.00
5741 7511 6.245724 GCTTTGTTAACGCAGTAATATTCGT 58.754 36.000 0.26 0.00 45.00 3.85
5805 7575 2.551270 TGGCACTTCCAGTCTTATCCT 58.449 47.619 0.00 0.00 40.72 3.24
5843 7613 8.599774 GTGTGTTTGTTTGTTGTATGCTATTTT 58.400 29.630 0.00 0.00 0.00 1.82
5875 7645 3.514645 CTGGATAATGCTTGTGGTTTGC 58.485 45.455 0.00 0.00 0.00 3.68
5951 7721 5.825679 TGTGAACTTGTTACTTGCCTAATGT 59.174 36.000 0.00 0.00 0.00 2.71
5954 7724 4.980573 ACTTGTTACTTGCCTAATGTGGA 58.019 39.130 0.00 0.00 0.00 4.02
5975 7745 8.986847 TGTGGATTAAGTTTATGCATTTTTGTG 58.013 29.630 3.54 0.00 0.00 3.33
6053 7823 4.974645 AGTGGACTGTGGATCAAGTTAA 57.025 40.909 0.00 0.00 0.00 2.01
6116 7886 7.612633 TGATTTTGTTGATCATCTGAGGAATGA 59.387 33.333 0.00 0.00 0.00 2.57
6201 7972 1.276415 TGCGTTTTTGCAGTTTGCTC 58.724 45.000 2.48 0.00 45.31 4.26
6295 8066 4.741342 CATCTGCAACTCCTTTTGAATCC 58.259 43.478 0.00 0.00 0.00 3.01
6296 8067 4.104383 TCTGCAACTCCTTTTGAATCCT 57.896 40.909 0.00 0.00 0.00 3.24
6331 8106 4.116238 GCAGTGTAGCCTGATTTCTCTAC 58.884 47.826 0.00 0.00 34.23 2.59
6332 8107 4.142049 GCAGTGTAGCCTGATTTCTCTACT 60.142 45.833 0.00 0.00 34.23 2.57
6333 8108 5.347342 CAGTGTAGCCTGATTTCTCTACTG 58.653 45.833 0.00 0.00 34.23 2.74
6334 8109 5.020132 AGTGTAGCCTGATTTCTCTACTGT 58.980 41.667 0.00 0.00 34.19 3.55
6335 8110 5.482175 AGTGTAGCCTGATTTCTCTACTGTT 59.518 40.000 0.00 0.00 34.19 3.16
6336 8111 6.014156 AGTGTAGCCTGATTTCTCTACTGTTT 60.014 38.462 0.00 0.00 34.19 2.83
6337 8112 6.651225 GTGTAGCCTGATTTCTCTACTGTTTT 59.349 38.462 0.00 0.00 34.19 2.43
6338 8113 6.650807 TGTAGCCTGATTTCTCTACTGTTTTG 59.349 38.462 0.00 0.00 34.19 2.44
6339 8114 4.457257 AGCCTGATTTCTCTACTGTTTTGC 59.543 41.667 0.00 0.00 0.00 3.68
6340 8115 4.457257 GCCTGATTTCTCTACTGTTTTGCT 59.543 41.667 0.00 0.00 0.00 3.91
6341 8116 5.618640 GCCTGATTTCTCTACTGTTTTGCTG 60.619 44.000 0.00 0.00 0.00 4.41
6342 8117 5.702670 CCTGATTTCTCTACTGTTTTGCTGA 59.297 40.000 0.00 0.00 0.00 4.26
6343 8118 6.205464 CCTGATTTCTCTACTGTTTTGCTGAA 59.795 38.462 0.00 0.00 0.00 3.02
6344 8119 6.959361 TGATTTCTCTACTGTTTTGCTGAAC 58.041 36.000 0.00 0.00 0.00 3.18
6345 8120 6.767902 TGATTTCTCTACTGTTTTGCTGAACT 59.232 34.615 4.78 0.00 0.00 3.01
6346 8121 7.283127 TGATTTCTCTACTGTTTTGCTGAACTT 59.717 33.333 4.78 0.00 0.00 2.66
6347 8122 5.991328 TCTCTACTGTTTTGCTGAACTTG 57.009 39.130 4.78 1.54 0.00 3.16
6348 8123 4.273480 TCTCTACTGTTTTGCTGAACTTGC 59.727 41.667 4.78 0.00 0.00 4.01
6349 8124 2.584492 ACTGTTTTGCTGAACTTGCC 57.416 45.000 4.78 0.00 0.00 4.52
6350 8125 2.102578 ACTGTTTTGCTGAACTTGCCT 58.897 42.857 4.78 0.00 0.00 4.75
6351 8126 2.497273 ACTGTTTTGCTGAACTTGCCTT 59.503 40.909 4.78 0.00 0.00 4.35
6352 8127 3.055891 ACTGTTTTGCTGAACTTGCCTTT 60.056 39.130 4.78 0.00 0.00 3.11
6353 8128 3.934579 CTGTTTTGCTGAACTTGCCTTTT 59.065 39.130 4.78 0.00 0.00 2.27
6354 8129 3.683822 TGTTTTGCTGAACTTGCCTTTTG 59.316 39.130 4.78 0.00 0.00 2.44
6355 8130 2.600470 TTGCTGAACTTGCCTTTTGG 57.400 45.000 0.00 0.00 44.18 3.28
6356 8131 0.752054 TGCTGAACTTGCCTTTTGGG 59.248 50.000 0.00 0.00 40.82 4.12
6357 8132 0.033920 GCTGAACTTGCCTTTTGGGG 59.966 55.000 0.00 0.00 40.82 4.96
6365 8140 2.286826 GCCTTTTGGGGCCTTTAGG 58.713 57.895 0.84 6.82 45.92 2.69
6366 8141 1.264749 GCCTTTTGGGGCCTTTAGGG 61.265 60.000 0.84 2.13 45.92 3.53
6367 8142 0.617535 CCTTTTGGGGCCTTTAGGGG 60.618 60.000 0.84 0.00 35.46 4.79
6368 8143 0.617535 CTTTTGGGGCCTTTAGGGGG 60.618 60.000 0.84 0.00 35.18 5.40
6369 8144 1.080927 TTTTGGGGCCTTTAGGGGGA 61.081 55.000 0.84 0.00 35.18 4.81
6370 8145 1.080927 TTTGGGGCCTTTAGGGGGAA 61.081 55.000 0.84 0.00 35.18 3.97
6371 8146 1.806690 TTGGGGCCTTTAGGGGGAAC 61.807 60.000 0.84 0.00 35.18 3.62
6372 8147 1.934341 GGGGCCTTTAGGGGGAACT 60.934 63.158 0.84 0.00 35.18 3.01
6373 8148 1.515754 GGGGCCTTTAGGGGGAACTT 61.516 60.000 0.84 0.00 35.18 2.66
6374 8149 0.324368 GGGCCTTTAGGGGGAACTTG 60.324 60.000 0.84 0.00 35.18 3.16
6375 8150 0.408309 GGCCTTTAGGGGGAACTTGT 59.592 55.000 0.00 0.00 35.18 3.16
6376 8151 1.616187 GGCCTTTAGGGGGAACTTGTC 60.616 57.143 0.00 0.00 35.18 3.18
6377 8152 1.074889 GCCTTTAGGGGGAACTTGTCA 59.925 52.381 0.00 0.00 35.18 3.58
6378 8153 2.490168 GCCTTTAGGGGGAACTTGTCAA 60.490 50.000 0.00 0.00 35.18 3.18
6379 8154 3.421844 CCTTTAGGGGGAACTTGTCAAG 58.578 50.000 11.17 11.17 0.00 3.02
6380 8155 2.579410 TTAGGGGGAACTTGTCAAGC 57.421 50.000 12.66 0.00 0.00 4.01
6381 8156 0.696501 TAGGGGGAACTTGTCAAGCC 59.303 55.000 12.66 6.59 0.00 4.35
6382 8157 1.068352 AGGGGGAACTTGTCAAGCCT 61.068 55.000 12.66 7.59 0.00 4.58
6383 8158 0.178961 GGGGGAACTTGTCAAGCCTT 60.179 55.000 12.66 0.24 0.00 4.35
6384 8159 1.704641 GGGGAACTTGTCAAGCCTTT 58.295 50.000 12.66 0.00 0.00 3.11
6385 8160 1.341209 GGGGAACTTGTCAAGCCTTTG 59.659 52.381 12.66 0.00 35.57 2.77
6386 8161 1.341209 GGGAACTTGTCAAGCCTTTGG 59.659 52.381 12.66 0.00 34.97 3.28
6387 8162 1.341209 GGAACTTGTCAAGCCTTTGGG 59.659 52.381 12.66 0.00 34.97 4.12
6397 8172 2.282462 CCTTTGGGCCTTCGCTGT 60.282 61.111 4.53 0.00 34.44 4.40
6398 8173 1.903404 CCTTTGGGCCTTCGCTGTT 60.903 57.895 4.53 0.00 34.44 3.16
6399 8174 1.463553 CCTTTGGGCCTTCGCTGTTT 61.464 55.000 4.53 0.00 34.44 2.83
6400 8175 0.389025 CTTTGGGCCTTCGCTGTTTT 59.611 50.000 4.53 0.00 34.44 2.43
6401 8176 0.827368 TTTGGGCCTTCGCTGTTTTT 59.173 45.000 4.53 0.00 34.44 1.94
6431 8206 7.900782 TGAAGAAAATGGTAGTAGTTGTAGC 57.099 36.000 0.00 0.00 0.00 3.58
6432 8207 6.877322 TGAAGAAAATGGTAGTAGTTGTAGCC 59.123 38.462 0.00 0.00 0.00 3.93
6433 8208 5.742063 AGAAAATGGTAGTAGTTGTAGCCC 58.258 41.667 0.00 0.00 0.00 5.19
6434 8209 3.814005 AATGGTAGTAGTTGTAGCCCG 57.186 47.619 0.00 0.00 0.00 6.13
6435 8210 2.512692 TGGTAGTAGTTGTAGCCCGA 57.487 50.000 0.00 0.00 0.00 5.14
6436 8211 3.022557 TGGTAGTAGTTGTAGCCCGAT 57.977 47.619 0.00 0.00 0.00 4.18
6437 8212 3.368248 TGGTAGTAGTTGTAGCCCGATT 58.632 45.455 0.00 0.00 0.00 3.34
6438 8213 3.770933 TGGTAGTAGTTGTAGCCCGATTT 59.229 43.478 0.00 0.00 0.00 2.17
6439 8214 4.142093 TGGTAGTAGTTGTAGCCCGATTTC 60.142 45.833 0.00 0.00 0.00 2.17
6440 8215 4.099113 GGTAGTAGTTGTAGCCCGATTTCT 59.901 45.833 0.00 0.00 0.00 2.52
6441 8216 5.300286 GGTAGTAGTTGTAGCCCGATTTCTA 59.700 44.000 0.00 0.00 0.00 2.10
6515 8400 2.558359 GGTGGCACTAAGAGCACAAAAT 59.442 45.455 18.45 0.00 0.00 1.82
6541 8426 3.556213 GGTTGGAGTAAATTTTGGGGCAC 60.556 47.826 0.00 0.00 0.00 5.01
6563 8448 7.403421 GCACAAAAATGTGGTTTTTAAGGTAC 58.597 34.615 10.62 0.00 45.70 3.34
6564 8449 7.279090 GCACAAAAATGTGGTTTTTAAGGTACT 59.721 33.333 10.62 0.00 45.70 2.73
6565 8450 8.813282 CACAAAAATGTGGTTTTTAAGGTACTC 58.187 33.333 1.05 0.00 45.70 2.59
6566 8451 7.982919 ACAAAAATGTGGTTTTTAAGGTACTCC 59.017 33.333 0.00 0.00 45.70 3.85
6567 8452 6.659745 AAATGTGGTTTTTAAGGTACTCCC 57.340 37.500 0.00 0.00 38.49 4.30
6568 8453 6.842280 AAAATGTGGTTTTTAAGGTACTCCCT 59.158 34.615 0.00 0.00 40.35 4.20
6569 8454 4.976864 TGTGGTTTTTAAGGTACTCCCTC 58.023 43.478 0.00 0.00 45.47 4.30
6570 8455 4.202493 TGTGGTTTTTAAGGTACTCCCTCC 60.202 45.833 0.00 0.00 45.47 4.30
6571 8456 3.008266 TGGTTTTTAAGGTACTCCCTCCG 59.992 47.826 0.00 0.00 45.47 4.63
6572 8457 3.008375 GGTTTTTAAGGTACTCCCTCCGT 59.992 47.826 0.00 0.00 45.47 4.69
6573 8458 4.248859 GTTTTTAAGGTACTCCCTCCGTC 58.751 47.826 0.00 0.00 45.47 4.79
6574 8459 2.905415 TTAAGGTACTCCCTCCGTCA 57.095 50.000 0.00 0.00 45.47 4.35
6575 8460 3.393426 TTAAGGTACTCCCTCCGTCAT 57.607 47.619 0.00 0.00 45.47 3.06
6576 8461 4.524802 TTAAGGTACTCCCTCCGTCATA 57.475 45.455 0.00 0.00 45.47 2.15
6577 8462 3.393426 AAGGTACTCCCTCCGTCATAA 57.607 47.619 0.00 0.00 45.47 1.90
6578 8463 3.614568 AGGTACTCCCTCCGTCATAAT 57.385 47.619 0.00 0.00 40.71 1.28
6579 8464 3.924922 AGGTACTCCCTCCGTCATAATT 58.075 45.455 0.00 0.00 40.71 1.40
6580 8465 4.296056 AGGTACTCCCTCCGTCATAATTT 58.704 43.478 0.00 0.00 40.71 1.82
6581 8466 5.461327 AGGTACTCCCTCCGTCATAATTTA 58.539 41.667 0.00 0.00 40.71 1.40
6582 8467 5.539193 AGGTACTCCCTCCGTCATAATTTAG 59.461 44.000 0.00 0.00 40.71 1.85
6583 8468 5.537674 GGTACTCCCTCCGTCATAATTTAGA 59.462 44.000 0.00 0.00 0.00 2.10
6584 8469 6.041296 GGTACTCCCTCCGTCATAATTTAGAA 59.959 42.308 0.00 0.00 0.00 2.10
6585 8470 6.163135 ACTCCCTCCGTCATAATTTAGAAG 57.837 41.667 0.00 0.00 0.00 2.85
6586 8471 5.070580 ACTCCCTCCGTCATAATTTAGAAGG 59.929 44.000 5.74 5.74 35.14 3.46
6587 8472 4.065789 CCCTCCGTCATAATTTAGAAGGC 58.934 47.826 6.84 0.00 34.05 4.35
6588 8473 4.444306 CCCTCCGTCATAATTTAGAAGGCA 60.444 45.833 6.84 0.00 34.05 4.75
6589 8474 4.511826 CCTCCGTCATAATTTAGAAGGCAC 59.488 45.833 6.84 0.00 34.05 5.01
6590 8475 5.092554 TCCGTCATAATTTAGAAGGCACA 57.907 39.130 6.84 0.00 34.05 4.57
6591 8476 5.116180 TCCGTCATAATTTAGAAGGCACAG 58.884 41.667 6.84 0.00 34.05 3.66
6592 8477 4.876107 CCGTCATAATTTAGAAGGCACAGT 59.124 41.667 0.00 0.00 0.00 3.55
6593 8478 5.354234 CCGTCATAATTTAGAAGGCACAGTT 59.646 40.000 0.00 0.00 0.00 3.16
6594 8479 6.537301 CCGTCATAATTTAGAAGGCACAGTTA 59.463 38.462 0.00 0.00 0.00 2.24
6595 8480 7.065324 CCGTCATAATTTAGAAGGCACAGTTAA 59.935 37.037 0.00 0.00 0.00 2.01
6596 8481 8.447833 CGTCATAATTTAGAAGGCACAGTTAAA 58.552 33.333 0.00 0.00 0.00 1.52
6602 8487 9.620660 AATTTAGAAGGCACAGTTAAATTTACG 57.379 29.630 0.00 0.00 32.80 3.18
6603 8488 7.733402 TTAGAAGGCACAGTTAAATTTACGT 57.267 32.000 0.00 0.00 0.00 3.57
6604 8489 5.997385 AGAAGGCACAGTTAAATTTACGTG 58.003 37.500 13.52 13.52 0.00 4.49
6605 8490 4.155310 AGGCACAGTTAAATTTACGTGC 57.845 40.909 24.85 24.85 41.15 5.34
6606 8491 2.906161 GGCACAGTTAAATTTACGTGCG 59.094 45.455 25.32 12.05 41.93 5.34
6607 8492 3.547601 GCACAGTTAAATTTACGTGCGT 58.452 40.909 21.46 2.05 36.82 5.24
6608 8493 3.969981 GCACAGTTAAATTTACGTGCGTT 59.030 39.130 21.46 0.00 36.82 4.84
6609 8494 4.438471 GCACAGTTAAATTTACGTGCGTTT 59.562 37.500 21.46 0.00 36.82 3.60
6610 8495 5.385615 GCACAGTTAAATTTACGTGCGTTTC 60.386 40.000 21.46 5.98 36.82 2.78
6611 8496 5.114423 CACAGTTAAATTTACGTGCGTTTCC 59.886 40.000 1.66 0.00 0.00 3.13
6612 8497 5.206299 CAGTTAAATTTACGTGCGTTTCCA 58.794 37.500 1.66 0.00 0.00 3.53
6613 8498 5.114423 CAGTTAAATTTACGTGCGTTTCCAC 59.886 40.000 1.66 0.00 0.00 4.02
6614 8499 3.694535 AAATTTACGTGCGTTTCCACA 57.305 38.095 1.66 0.00 35.47 4.17
6615 8500 3.694535 AATTTACGTGCGTTTCCACAA 57.305 38.095 1.66 0.00 35.47 3.33
6616 8501 3.907894 ATTTACGTGCGTTTCCACAAT 57.092 38.095 1.66 0.00 35.47 2.71
6617 8502 5.359716 AATTTACGTGCGTTTCCACAATA 57.640 34.783 1.66 0.00 35.47 1.90
6618 8503 4.392619 TTTACGTGCGTTTCCACAATAG 57.607 40.909 1.66 0.00 35.47 1.73
6619 8504 2.157834 ACGTGCGTTTCCACAATAGA 57.842 45.000 0.00 0.00 35.47 1.98
6620 8505 1.796459 ACGTGCGTTTCCACAATAGAC 59.204 47.619 0.00 0.00 35.47 2.59
6621 8506 1.795872 CGTGCGTTTCCACAATAGACA 59.204 47.619 0.00 0.00 35.47 3.41
6622 8507 2.222213 CGTGCGTTTCCACAATAGACAA 59.778 45.455 0.00 0.00 35.47 3.18
6623 8508 3.664276 CGTGCGTTTCCACAATAGACAAG 60.664 47.826 0.00 0.00 35.47 3.16
6624 8509 2.811431 TGCGTTTCCACAATAGACAAGG 59.189 45.455 0.00 0.00 0.00 3.61
6625 8510 2.812011 GCGTTTCCACAATAGACAAGGT 59.188 45.455 0.00 0.00 0.00 3.50
6626 8511 3.252458 GCGTTTCCACAATAGACAAGGTT 59.748 43.478 0.00 0.00 0.00 3.50
6627 8512 4.261447 GCGTTTCCACAATAGACAAGGTTT 60.261 41.667 0.00 0.00 0.00 3.27
6628 8513 5.049267 GCGTTTCCACAATAGACAAGGTTTA 60.049 40.000 0.00 0.00 0.00 2.01
6629 8514 6.599437 CGTTTCCACAATAGACAAGGTTTAG 58.401 40.000 0.00 0.00 0.00 1.85
6630 8515 6.348213 CGTTTCCACAATAGACAAGGTTTAGG 60.348 42.308 0.00 0.00 0.00 2.69
6631 8516 5.174037 TCCACAATAGACAAGGTTTAGGG 57.826 43.478 0.00 0.00 0.00 3.53
6632 8517 3.694566 CCACAATAGACAAGGTTTAGGGC 59.305 47.826 0.00 0.00 0.00 5.19
6633 8518 3.374058 CACAATAGACAAGGTTTAGGGCG 59.626 47.826 0.00 0.00 0.00 6.13
6634 8519 2.327200 ATAGACAAGGTTTAGGGCGC 57.673 50.000 0.00 0.00 0.00 6.53
6635 8520 0.978151 TAGACAAGGTTTAGGGCGCA 59.022 50.000 10.83 0.00 0.00 6.09
6636 8521 0.328258 AGACAAGGTTTAGGGCGCAT 59.672 50.000 10.83 0.00 0.00 4.73
6637 8522 1.173913 GACAAGGTTTAGGGCGCATT 58.826 50.000 10.83 0.00 0.00 3.56
6638 8523 0.887933 ACAAGGTTTAGGGCGCATTG 59.112 50.000 10.83 3.20 0.00 2.82
6639 8524 0.458370 CAAGGTTTAGGGCGCATTGC 60.458 55.000 10.83 0.00 45.38 3.56
6654 8539 6.901699 GCGCATTGCATTTATTTCTAGTAG 57.098 37.500 9.69 0.00 45.45 2.57
6655 8540 5.340667 GCGCATTGCATTTATTTCTAGTAGC 59.659 40.000 9.69 0.00 45.45 3.58
6656 8541 6.662616 CGCATTGCATTTATTTCTAGTAGCT 58.337 36.000 9.69 0.00 0.00 3.32
6657 8542 7.571244 GCGCATTGCATTTATTTCTAGTAGCTA 60.571 37.037 9.69 0.00 45.45 3.32
6658 8543 8.282592 CGCATTGCATTTATTTCTAGTAGCTAA 58.717 33.333 9.69 0.00 0.00 3.09
6659 8544 9.604626 GCATTGCATTTATTTCTAGTAGCTAAG 57.395 33.333 3.15 0.00 0.00 2.18
6660 8545 9.604626 CATTGCATTTATTTCTAGTAGCTAAGC 57.395 33.333 0.00 0.00 0.00 3.09
6661 8546 8.731275 TTGCATTTATTTCTAGTAGCTAAGCA 57.269 30.769 0.00 0.00 0.00 3.91
6662 8547 8.731275 TGCATTTATTTCTAGTAGCTAAGCAA 57.269 30.769 0.00 0.00 0.00 3.91
6663 8548 9.342308 TGCATTTATTTCTAGTAGCTAAGCAAT 57.658 29.630 0.00 0.00 0.00 3.56
6669 8554 8.764524 ATTTCTAGTAGCTAAGCAATATTCCG 57.235 34.615 0.00 0.00 0.00 4.30
6670 8555 7.520451 TTCTAGTAGCTAAGCAATATTCCGA 57.480 36.000 0.00 0.00 0.00 4.55
6671 8556 7.704578 TCTAGTAGCTAAGCAATATTCCGAT 57.295 36.000 0.00 0.00 0.00 4.18
6672 8557 8.803397 TCTAGTAGCTAAGCAATATTCCGATA 57.197 34.615 0.00 0.00 0.00 2.92
6673 8558 9.409918 TCTAGTAGCTAAGCAATATTCCGATAT 57.590 33.333 0.00 0.00 0.00 1.63
6676 8561 9.191479 AGTAGCTAAGCAATATTCCGATATACT 57.809 33.333 0.00 0.00 0.00 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 3.562557 ACAACACTGAACGGTGGTTTATC 59.437 43.478 16.49 0.00 41.09 1.75
60 61 7.786178 TGGATATGCTTATACAACACTGAAC 57.214 36.000 2.06 0.00 0.00 3.18
61 62 7.661437 GGATGGATATGCTTATACAACACTGAA 59.339 37.037 8.49 0.00 32.31 3.02
62 63 7.161404 GGATGGATATGCTTATACAACACTGA 58.839 38.462 8.49 0.00 32.31 3.41
65 66 7.308589 GGTTGGATGGATATGCTTATACAACAC 60.309 40.741 18.42 8.86 36.97 3.32
92 93 1.635663 GCGGGTGGATGAAGTTGTCG 61.636 60.000 0.00 0.00 0.00 4.35
97 98 1.224592 GGATGCGGGTGGATGAAGT 59.775 57.895 0.00 0.00 0.00 3.01
157 160 2.037136 CGCTTGTCAGGGCCTTCTG 61.037 63.158 1.32 1.98 36.17 3.02
185 194 0.453615 CTCAGACAGACGAGACGTGC 60.454 60.000 0.00 0.00 41.37 5.34
189 198 1.135731 CGCCTCAGACAGACGAGAC 59.864 63.158 0.00 0.00 0.00 3.36
207 216 4.112341 CTGCAAGGCAAGGCGCTC 62.112 66.667 7.64 0.00 38.41 5.03
227 236 1.068474 CTAAGTCACTTGGGTTCGCG 58.932 55.000 0.00 0.00 0.00 5.87
231 240 1.604693 CGCGTCTAAGTCACTTGGGTT 60.605 52.381 0.00 0.00 0.00 4.11
238 247 1.069378 CCGGTTCGCGTCTAAGTCAC 61.069 60.000 5.77 0.00 0.00 3.67
252 263 4.941309 GGGTTGACACCGCCGGTT 62.941 66.667 5.76 0.00 45.39 4.44
266 277 2.035626 CAATGCAGGGTTCGGGGT 59.964 61.111 0.00 0.00 0.00 4.95
269 280 1.434696 GATGCAATGCAGGGTTCGG 59.565 57.895 14.98 0.00 43.65 4.30
316 327 1.698506 TCGGGGCTTTGTTCAAATGT 58.301 45.000 0.00 0.00 0.00 2.71
318 329 2.544903 CGTTTCGGGGCTTTGTTCAAAT 60.545 45.455 0.00 0.00 0.00 2.32
321 332 0.464013 TCGTTTCGGGGCTTTGTTCA 60.464 50.000 0.00 0.00 0.00 3.18
329 340 0.794473 CAGTAGTTTCGTTTCGGGGC 59.206 55.000 0.00 0.00 0.00 5.80
330 341 1.435577 CCAGTAGTTTCGTTTCGGGG 58.564 55.000 0.00 0.00 0.00 5.73
331 342 1.435577 CCCAGTAGTTTCGTTTCGGG 58.564 55.000 0.00 0.00 0.00 5.14
332 343 0.794473 GCCCAGTAGTTTCGTTTCGG 59.206 55.000 0.00 0.00 0.00 4.30
333 344 0.437295 CGCCCAGTAGTTTCGTTTCG 59.563 55.000 0.00 0.00 0.00 3.46
334 345 0.794473 CCGCCCAGTAGTTTCGTTTC 59.206 55.000 0.00 0.00 0.00 2.78
335 346 0.393820 TCCGCCCAGTAGTTTCGTTT 59.606 50.000 0.00 0.00 0.00 3.60
336 347 0.320160 GTCCGCCCAGTAGTTTCGTT 60.320 55.000 0.00 0.00 0.00 3.85
337 348 1.291272 GTCCGCCCAGTAGTTTCGT 59.709 57.895 0.00 0.00 0.00 3.85
338 349 1.804326 CGTCCGCCCAGTAGTTTCG 60.804 63.158 0.00 0.00 0.00 3.46
339 350 0.735287 GTCGTCCGCCCAGTAGTTTC 60.735 60.000 0.00 0.00 0.00 2.78
340 351 1.291272 GTCGTCCGCCCAGTAGTTT 59.709 57.895 0.00 0.00 0.00 2.66
341 352 2.968206 GTCGTCCGCCCAGTAGTT 59.032 61.111 0.00 0.00 0.00 2.24
342 353 3.437795 CGTCGTCCGCCCAGTAGT 61.438 66.667 0.00 0.00 0.00 2.73
343 354 3.109612 CTCGTCGTCCGCCCAGTAG 62.110 68.421 0.00 0.00 36.19 2.57
344 355 3.129502 CTCGTCGTCCGCCCAGTA 61.130 66.667 0.00 0.00 36.19 2.74
355 366 4.717629 TTCGGCTGGTGCTCGTCG 62.718 66.667 0.00 0.00 39.59 5.12
356 367 2.209064 TAGTTCGGCTGGTGCTCGTC 62.209 60.000 0.00 0.00 39.59 4.20
357 368 1.605058 ATAGTTCGGCTGGTGCTCGT 61.605 55.000 0.00 0.00 39.59 4.18
358 369 0.872021 GATAGTTCGGCTGGTGCTCG 60.872 60.000 0.00 0.00 39.59 5.03
359 370 0.175760 TGATAGTTCGGCTGGTGCTC 59.824 55.000 0.00 0.00 39.59 4.26
360 371 0.108138 GTGATAGTTCGGCTGGTGCT 60.108 55.000 0.00 0.00 39.59 4.40
361 372 1.421410 CGTGATAGTTCGGCTGGTGC 61.421 60.000 0.00 0.00 38.76 5.01
362 373 0.172578 TCGTGATAGTTCGGCTGGTG 59.827 55.000 0.00 0.00 0.00 4.17
363 374 1.112113 ATCGTGATAGTTCGGCTGGT 58.888 50.000 0.00 0.00 0.00 4.00
364 375 1.491670 CATCGTGATAGTTCGGCTGG 58.508 55.000 0.00 0.00 0.00 4.85
365 376 0.855349 GCATCGTGATAGTTCGGCTG 59.145 55.000 0.00 0.00 0.00 4.85
366 377 0.459899 TGCATCGTGATAGTTCGGCT 59.540 50.000 0.00 0.00 0.00 5.52
367 378 1.193203 CATGCATCGTGATAGTTCGGC 59.807 52.381 0.00 0.00 0.00 5.54
368 379 2.742774 TCATGCATCGTGATAGTTCGG 58.257 47.619 0.00 0.00 0.00 4.30
369 380 4.445385 TCAATCATGCATCGTGATAGTTCG 59.555 41.667 0.00 0.00 38.92 3.95
370 381 5.912360 TCAATCATGCATCGTGATAGTTC 57.088 39.130 0.00 0.00 38.92 3.01
371 382 5.277011 CGTTCAATCATGCATCGTGATAGTT 60.277 40.000 0.00 0.00 38.92 2.24
372 383 4.209911 CGTTCAATCATGCATCGTGATAGT 59.790 41.667 0.00 0.00 38.92 2.12
373 384 4.445385 TCGTTCAATCATGCATCGTGATAG 59.555 41.667 0.00 0.00 38.92 2.08
374 385 4.209080 GTCGTTCAATCATGCATCGTGATA 59.791 41.667 0.00 0.00 38.92 2.15
375 386 3.001634 GTCGTTCAATCATGCATCGTGAT 59.998 43.478 0.00 0.00 41.25 3.06
376 387 2.348362 GTCGTTCAATCATGCATCGTGA 59.652 45.455 0.00 0.00 33.71 4.35
377 388 2.537529 GGTCGTTCAATCATGCATCGTG 60.538 50.000 0.00 0.00 0.00 4.35
378 389 1.665679 GGTCGTTCAATCATGCATCGT 59.334 47.619 0.00 0.00 0.00 3.73
379 390 1.003545 GGGTCGTTCAATCATGCATCG 60.004 52.381 0.00 0.00 0.00 3.84
380 391 2.292267 AGGGTCGTTCAATCATGCATC 58.708 47.619 0.00 0.00 0.00 3.91
381 392 2.425143 AGGGTCGTTCAATCATGCAT 57.575 45.000 0.00 0.00 0.00 3.96
382 393 2.627945 GTAGGGTCGTTCAATCATGCA 58.372 47.619 0.00 0.00 0.00 3.96
383 394 1.940613 GGTAGGGTCGTTCAATCATGC 59.059 52.381 0.00 0.00 0.00 4.06
384 395 3.118775 TCAGGTAGGGTCGTTCAATCATG 60.119 47.826 0.00 0.00 0.00 3.07
385 396 3.104512 TCAGGTAGGGTCGTTCAATCAT 58.895 45.455 0.00 0.00 0.00 2.45
386 397 2.531771 TCAGGTAGGGTCGTTCAATCA 58.468 47.619 0.00 0.00 0.00 2.57
387 398 3.458189 CATCAGGTAGGGTCGTTCAATC 58.542 50.000 0.00 0.00 0.00 2.67
388 399 2.420129 GCATCAGGTAGGGTCGTTCAAT 60.420 50.000 0.00 0.00 0.00 2.57
389 400 1.066430 GCATCAGGTAGGGTCGTTCAA 60.066 52.381 0.00 0.00 0.00 2.69
390 401 0.535335 GCATCAGGTAGGGTCGTTCA 59.465 55.000 0.00 0.00 0.00 3.18
391 402 0.535335 TGCATCAGGTAGGGTCGTTC 59.465 55.000 0.00 0.00 0.00 3.95
392 403 1.134401 CATGCATCAGGTAGGGTCGTT 60.134 52.381 0.00 0.00 0.00 3.85
393 404 0.465705 CATGCATCAGGTAGGGTCGT 59.534 55.000 0.00 0.00 0.00 4.34
394 405 0.250038 CCATGCATCAGGTAGGGTCG 60.250 60.000 0.00 0.00 0.00 4.79
395 406 1.131638 TCCATGCATCAGGTAGGGTC 58.868 55.000 0.00 0.00 34.40 4.46
396 407 0.839946 GTCCATGCATCAGGTAGGGT 59.160 55.000 0.00 0.00 34.40 4.34
397 408 0.250038 CGTCCATGCATCAGGTAGGG 60.250 60.000 0.00 0.00 34.02 3.53
398 409 0.250038 CCGTCCATGCATCAGGTAGG 60.250 60.000 0.00 0.88 0.00 3.18
399 410 0.882042 GCCGTCCATGCATCAGGTAG 60.882 60.000 0.00 0.00 0.00 3.18
400 411 1.146041 GCCGTCCATGCATCAGGTA 59.854 57.895 0.00 0.00 0.00 3.08
401 412 2.124570 GCCGTCCATGCATCAGGT 60.125 61.111 0.00 0.00 0.00 4.00
402 413 1.452651 AAGCCGTCCATGCATCAGG 60.453 57.895 0.00 0.00 0.00 3.86
403 414 0.745486 TCAAGCCGTCCATGCATCAG 60.745 55.000 0.00 0.00 0.00 2.90
404 415 0.107066 ATCAAGCCGTCCATGCATCA 60.107 50.000 0.00 0.00 0.00 3.07
405 416 0.309922 CATCAAGCCGTCCATGCATC 59.690 55.000 0.00 0.00 0.00 3.91
406 417 0.394762 ACATCAAGCCGTCCATGCAT 60.395 50.000 0.00 0.00 0.00 3.96
407 418 1.002257 ACATCAAGCCGTCCATGCA 60.002 52.632 0.00 0.00 0.00 3.96
408 419 1.308069 ACACATCAAGCCGTCCATGC 61.308 55.000 0.00 0.00 0.00 4.06
409 420 1.665679 GTACACATCAAGCCGTCCATG 59.334 52.381 0.00 0.00 0.00 3.66
410 421 1.739035 CGTACACATCAAGCCGTCCAT 60.739 52.381 0.00 0.00 0.00 3.41
411 422 0.389296 CGTACACATCAAGCCGTCCA 60.389 55.000 0.00 0.00 0.00 4.02
412 423 1.082117 CCGTACACATCAAGCCGTCC 61.082 60.000 0.00 0.00 0.00 4.79
413 424 0.389426 ACCGTACACATCAAGCCGTC 60.389 55.000 0.00 0.00 0.00 4.79
414 425 0.389426 GACCGTACACATCAAGCCGT 60.389 55.000 0.00 0.00 0.00 5.68
415 426 1.410737 CGACCGTACACATCAAGCCG 61.411 60.000 0.00 0.00 0.00 5.52
416 427 0.389426 ACGACCGTACACATCAAGCC 60.389 55.000 0.00 0.00 0.00 4.35
417 428 0.989890 GACGACCGTACACATCAAGC 59.010 55.000 0.00 0.00 0.00 4.01
418 429 2.095415 TCAGACGACCGTACACATCAAG 60.095 50.000 0.00 0.00 0.00 3.02
419 430 1.881324 TCAGACGACCGTACACATCAA 59.119 47.619 0.00 0.00 0.00 2.57
420 431 1.525941 TCAGACGACCGTACACATCA 58.474 50.000 0.00 0.00 0.00 3.07
421 432 2.624316 TTCAGACGACCGTACACATC 57.376 50.000 0.00 0.00 0.00 3.06
422 433 3.374220 TTTTCAGACGACCGTACACAT 57.626 42.857 0.00 0.00 0.00 3.21
423 434 2.867287 TTTTCAGACGACCGTACACA 57.133 45.000 0.00 0.00 0.00 3.72
424 435 3.311106 TGATTTTCAGACGACCGTACAC 58.689 45.455 0.00 0.00 0.00 2.90
425 436 3.646611 TGATTTTCAGACGACCGTACA 57.353 42.857 0.00 0.00 0.00 2.90
426 437 3.550678 GGATGATTTTCAGACGACCGTAC 59.449 47.826 0.00 0.00 0.00 3.67
427 438 3.193903 TGGATGATTTTCAGACGACCGTA 59.806 43.478 0.00 0.00 0.00 4.02
428 439 2.028476 TGGATGATTTTCAGACGACCGT 60.028 45.455 0.00 0.00 0.00 4.83
429 440 2.616960 TGGATGATTTTCAGACGACCG 58.383 47.619 0.00 0.00 0.00 4.79
430 441 3.751175 TGTTGGATGATTTTCAGACGACC 59.249 43.478 0.00 0.00 0.00 4.79
431 442 5.551760 ATGTTGGATGATTTTCAGACGAC 57.448 39.130 0.00 0.00 0.00 4.34
432 443 9.208022 GATATATGTTGGATGATTTTCAGACGA 57.792 33.333 0.00 0.00 0.00 4.20
433 444 8.164790 CGATATATGTTGGATGATTTTCAGACG 58.835 37.037 0.00 0.00 0.00 4.18
434 445 8.993121 ACGATATATGTTGGATGATTTTCAGAC 58.007 33.333 0.00 0.00 0.00 3.51
435 446 8.992073 CACGATATATGTTGGATGATTTTCAGA 58.008 33.333 0.00 0.00 0.00 3.27
436 447 8.777413 ACACGATATATGTTGGATGATTTTCAG 58.223 33.333 0.00 0.00 0.00 3.02
437 448 8.558700 CACACGATATATGTTGGATGATTTTCA 58.441 33.333 0.00 0.00 0.00 2.69
438 449 8.559536 ACACACGATATATGTTGGATGATTTTC 58.440 33.333 0.00 0.00 0.00 2.29
439 450 8.344831 CACACACGATATATGTTGGATGATTTT 58.655 33.333 0.00 0.00 0.00 1.82
440 451 7.498900 ACACACACGATATATGTTGGATGATTT 59.501 33.333 0.00 0.00 0.00 2.17
441 452 6.992123 ACACACACGATATATGTTGGATGATT 59.008 34.615 0.00 0.00 0.00 2.57
442 453 6.524734 ACACACACGATATATGTTGGATGAT 58.475 36.000 0.00 0.00 0.00 2.45
443 454 5.912892 ACACACACGATATATGTTGGATGA 58.087 37.500 0.00 0.00 0.00 2.92
444 455 6.923508 ACTACACACACGATATATGTTGGATG 59.076 38.462 0.00 0.00 0.00 3.51
445 456 7.050970 ACTACACACACGATATATGTTGGAT 57.949 36.000 0.00 0.00 0.00 3.41
446 457 6.459670 ACTACACACACGATATATGTTGGA 57.540 37.500 0.00 0.00 0.00 3.53
447 458 6.362551 GCTACTACACACACGATATATGTTGG 59.637 42.308 0.00 0.00 0.00 3.77
448 459 6.915843 TGCTACTACACACACGATATATGTTG 59.084 38.462 0.00 0.00 0.00 3.33
449 460 6.916387 GTGCTACTACACACACGATATATGTT 59.084 38.462 0.00 0.00 40.40 2.71
450 461 6.262496 AGTGCTACTACACACACGATATATGT 59.738 38.462 0.00 0.00 43.23 2.29
451 462 6.669278 AGTGCTACTACACACACGATATATG 58.331 40.000 0.00 0.00 43.23 1.78
452 463 6.879276 AGTGCTACTACACACACGATATAT 57.121 37.500 0.00 0.00 43.23 0.86
453 464 6.296365 GAGTGCTACTACACACACGATATA 57.704 41.667 0.00 0.00 43.23 0.86
454 465 5.171147 GAGTGCTACTACACACACGATAT 57.829 43.478 0.00 0.00 43.23 1.63
455 466 4.611310 GAGTGCTACTACACACACGATA 57.389 45.455 0.00 0.00 43.23 2.92
456 467 3.489180 GAGTGCTACTACACACACGAT 57.511 47.619 0.00 0.00 43.23 3.73
457 468 2.983402 GAGTGCTACTACACACACGA 57.017 50.000 0.00 0.00 43.23 4.35
458 469 1.603293 CGAGTGCTACTACACACACG 58.397 55.000 0.00 0.00 43.23 4.49
459 470 1.337821 GCGAGTGCTACTACACACAC 58.662 55.000 0.00 0.00 43.23 3.82
460 471 0.242825 GGCGAGTGCTACTACACACA 59.757 55.000 0.00 0.00 43.23 3.72
461 472 0.458025 GGGCGAGTGCTACTACACAC 60.458 60.000 0.00 0.00 43.23 3.82
462 473 1.601419 GGGGCGAGTGCTACTACACA 61.601 60.000 0.00 0.00 43.23 3.72
463 474 1.141234 GGGGCGAGTGCTACTACAC 59.859 63.158 0.00 0.00 42.25 2.90
464 475 2.412323 CGGGGCGAGTGCTACTACA 61.412 63.158 0.00 0.00 42.25 2.74
465 476 2.412112 CGGGGCGAGTGCTACTAC 59.588 66.667 0.00 0.00 42.25 2.73
466 477 2.831742 CCGGGGCGAGTGCTACTA 60.832 66.667 0.00 0.00 42.25 1.82
467 478 4.753662 TCCGGGGCGAGTGCTACT 62.754 66.667 0.00 0.00 42.25 2.57
468 479 3.766691 TTCCGGGGCGAGTGCTAC 61.767 66.667 0.00 0.00 42.25 3.58
469 480 3.766691 GTTCCGGGGCGAGTGCTA 61.767 66.667 0.00 0.00 42.25 3.49
472 483 4.796231 CTCGTTCCGGGGCGAGTG 62.796 72.222 28.16 13.80 46.45 3.51
486 497 1.566018 GCCAAAGTTCCACGTCCTCG 61.566 60.000 0.00 0.00 43.34 4.63
556 567 0.174845 CCGCTTCCATGTACTCCGAA 59.825 55.000 0.00 0.00 0.00 4.30
560 571 2.526120 GCGCCGCTTCCATGTACTC 61.526 63.158 0.00 0.00 0.00 2.59
598 609 3.633094 CTCGGTCACCTCCAGTGCG 62.633 68.421 0.00 0.00 46.81 5.34
621 655 4.587684 AGTTCGTTTCCTCTCTTACTTCCA 59.412 41.667 0.00 0.00 0.00 3.53
692 727 2.899339 GCTTCCTCTCGGCCATGC 60.899 66.667 2.24 0.00 0.00 4.06
710 745 1.169661 TCCGCACTCCGCACAAATTT 61.170 50.000 0.00 0.00 42.60 1.82
714 749 3.858868 GAGTCCGCACTCCGCACAA 62.859 63.158 0.00 0.00 43.14 3.33
741 776 2.872001 CTCGTCTCGTGTGCTCGC 60.872 66.667 0.00 0.00 0.00 5.03
746 781 1.081376 GGTGGTCTCGTCTCGTGTG 60.081 63.158 0.00 0.00 0.00 3.82
748 783 2.176055 CGGTGGTCTCGTCTCGTG 59.824 66.667 0.00 0.00 0.00 4.35
749 784 3.054503 CCGGTGGTCTCGTCTCGT 61.055 66.667 0.00 0.00 0.00 4.18
750 785 3.054503 ACCGGTGGTCTCGTCTCG 61.055 66.667 6.12 0.00 0.00 4.04
765 800 2.671682 GTTGCCTCTCCCTCCACC 59.328 66.667 0.00 0.00 0.00 4.61
825 865 3.686760 GCTTCTGCTTCCCAACCC 58.313 61.111 0.00 0.00 36.03 4.11
948 2368 1.535015 GCTCGGAGGAGATTGTTCGAG 60.535 57.143 7.20 0.00 43.27 4.04
1112 2532 1.114119 GTTAGGTCTAGAGGGGGCGG 61.114 65.000 0.00 0.00 0.00 6.13
1160 2580 8.754096 CAGAATCAAATCTCAGATAGAAAGACG 58.246 37.037 0.00 0.00 37.89 4.18
1172 2592 3.189080 CCGCAACACAGAATCAAATCTCA 59.811 43.478 0.00 0.00 0.00 3.27
1193 2613 2.046285 CCCGATCTGCCACCAAACC 61.046 63.158 0.00 0.00 0.00 3.27
1319 2739 1.073923 GATGCCCGATGGGAATTACCT 59.926 52.381 8.55 0.00 42.34 3.08
1334 2754 6.073548 CGGAGTACTGAAATTGATAAGATGCC 60.074 42.308 0.00 0.00 0.00 4.40
1350 2770 4.574828 CCCCAATTTCATTACGGAGTACTG 59.425 45.833 0.00 0.00 45.76 2.74
1591 3012 2.484062 CCGCAGAATGTCCATGCCC 61.484 63.158 0.00 0.00 39.31 5.36
1607 3028 2.584143 GGGACAACGATACCGCCG 60.584 66.667 0.00 0.00 39.95 6.46
1665 3189 1.466167 CACTACAGAATGCCTGCACAC 59.534 52.381 0.00 0.00 46.81 3.82
2085 3609 7.029563 GGAGCTCACCACTGTAATTTATTTTG 58.970 38.462 17.19 0.00 0.00 2.44
2397 4020 4.702612 TGGCTTCAGAAACAACTTACACAA 59.297 37.500 0.00 0.00 0.00 3.33
2398 4021 4.095782 GTGGCTTCAGAAACAACTTACACA 59.904 41.667 0.00 0.00 0.00 3.72
2541 4164 5.689383 AAAATACTCACAAGTCGTGCAAT 57.311 34.783 0.00 0.00 45.92 3.56
2560 4183 8.434589 AGAAAATCTGAATGATGGGGTAAAAA 57.565 30.769 0.00 0.00 35.21 1.94
2621 4244 8.856490 ATTCAGTGACAATCAAGTTACAAAAC 57.144 30.769 0.00 0.00 35.72 2.43
2633 4256 6.974622 ACAGTTTCACAAATTCAGTGACAATC 59.025 34.615 11.85 5.18 44.95 2.67
2634 4257 6.866480 ACAGTTTCACAAATTCAGTGACAAT 58.134 32.000 11.85 4.34 44.95 2.71
2637 4260 5.004726 GCAACAGTTTCACAAATTCAGTGAC 59.995 40.000 11.85 4.61 44.95 3.67
2669 4292 0.820226 CCTTCTGCTCGGATGTCTCA 59.180 55.000 0.00 0.00 0.00 3.27
2746 4369 4.164221 AGGAATAACATCACCTGTACTGGG 59.836 45.833 21.46 12.77 36.98 4.45
2812 4435 4.244862 CAAATTTTCCCCAGATTTCACCG 58.755 43.478 0.00 0.00 0.00 4.94
2836 4459 6.039717 CCAAGAAGCTATATAAGGCAGCAAAA 59.960 38.462 0.00 0.00 37.78 2.44
2855 4478 1.024271 GTGACAGCAACTGCCAAGAA 58.976 50.000 0.00 0.00 43.38 2.52
2858 4481 1.134753 CTTTGTGACAGCAACTGCCAA 59.865 47.619 0.00 0.00 43.38 4.52
2865 4488 2.917933 AGTAGCACTTTGTGACAGCAA 58.082 42.857 1.52 0.00 35.23 3.91
2889 4512 5.014858 AGAACATGCAGAATGACCTCATTT 58.985 37.500 0.00 0.00 45.72 2.32
2921 4544 1.289530 AGGTTCCCAACTTGGTGGAAA 59.710 47.619 6.23 0.00 41.65 3.13
3025 4648 5.220662 CCAAAGAACACATGCTATACTTCCG 60.221 44.000 0.00 0.00 0.00 4.30
3091 4714 8.996651 AAGAACAAGAAAGAGGAAGGAAATAA 57.003 30.769 0.00 0.00 0.00 1.40
3194 4817 6.701400 CCCCAAAATTAAAAGATGCCTATTCG 59.299 38.462 0.00 0.00 0.00 3.34
3196 4819 6.446759 ACCCCCAAAATTAAAAGATGCCTATT 59.553 34.615 0.00 0.00 0.00 1.73
3209 4832 5.473849 TGGTATCATGACCCCCAAAATTA 57.526 39.130 0.00 0.00 38.89 1.40
3243 4866 5.426689 TTCCATATGGACATCTATGGCTC 57.573 43.478 24.47 0.00 45.39 4.70
3419 5042 3.543494 CGAGCATCAAAATTACCTTTGCG 59.457 43.478 0.00 0.00 36.44 4.85
3654 5277 0.255890 GCCAATTAGGTCTCAGGGCA 59.744 55.000 0.00 0.00 39.66 5.36
3673 5296 3.088789 ACTACTCACCAGTGGACCTAG 57.911 52.381 18.40 10.68 34.72 3.02
3784 5407 5.649265 TCTAGGAGTTGAGAGATGCCATAT 58.351 41.667 0.00 0.00 0.00 1.78
3995 5620 3.756963 CCTTACCAGGGAACTTGCTTAAC 59.243 47.826 0.00 0.00 40.21 2.01
4219 5866 8.954950 TTTTTAGAAATGAACCTGCATTCAAA 57.045 26.923 6.82 0.00 41.78 2.69
4286 5936 9.715121 CTAGGTTTATTTGTTACCTTGTCAGTA 57.285 33.333 0.00 0.00 42.18 2.74
4669 6437 6.061441 ACAATGTCAAACTCATTACAGACCA 58.939 36.000 0.00 0.00 34.34 4.02
4675 6443 7.538678 GTGGATGAACAATGTCAAACTCATTAC 59.461 37.037 0.00 0.45 34.34 1.89
4838 6606 5.113383 TCATGTAACATACGGACAACATCC 58.887 41.667 0.00 0.00 45.20 3.51
5045 6815 4.516698 CGATCCCTGCAGCAAAAGTATTAT 59.483 41.667 8.66 0.00 0.00 1.28
5249 7019 2.621070 TCCTTGTGCCTATCCCTATCC 58.379 52.381 0.00 0.00 0.00 2.59
5330 7100 3.869832 CGTAATCTCTGTCACGGTCTCTA 59.130 47.826 0.00 0.00 0.00 2.43
5429 7199 0.035881 CAGCCTCACTCTCCTGCAAA 59.964 55.000 0.00 0.00 0.00 3.68
5444 7214 3.503748 GCTCACCATTACCATAATCAGCC 59.496 47.826 0.00 0.00 0.00 4.85
5501 7271 4.966168 TCTAGGCCATAACCATACTGTTCA 59.034 41.667 5.01 0.00 0.00 3.18
5630 7400 1.061424 TCATATGCCTCCCCTTCCTCA 60.061 52.381 0.00 0.00 0.00 3.86
5677 7447 6.195600 AGTTTTAGTTCCTGTATTCACCCA 57.804 37.500 0.00 0.00 0.00 4.51
5679 7449 7.739498 TCAAGTTTTAGTTCCTGTATTCACC 57.261 36.000 0.00 0.00 0.00 4.02
5707 7477 3.243134 GCGTTAACAAAGCCTTACCACAA 60.243 43.478 6.39 0.00 0.00 3.33
5805 7575 9.490379 AACAAACAAACACACCAAAAATAAGTA 57.510 25.926 0.00 0.00 0.00 2.24
5843 7613 9.531942 CACAAGCATTATCCAGCAAATTATTAA 57.468 29.630 0.00 0.00 0.00 1.40
5951 7721 7.605691 CCCACAAAAATGCATAAACTTAATCCA 59.394 33.333 0.00 0.00 0.00 3.41
5954 7724 8.916628 AACCCACAAAAATGCATAAACTTAAT 57.083 26.923 0.00 0.00 0.00 1.40
6222 7993 2.041755 TCTGACTTCTCAGAGGCCTGTA 59.958 50.000 12.00 0.00 46.79 2.74
6223 7994 1.203112 TCTGACTTCTCAGAGGCCTGT 60.203 52.381 12.00 1.36 46.79 4.00
6320 8095 6.767902 AGTTCAGCAAAACAGTAGAGAAATCA 59.232 34.615 4.34 0.00 0.00 2.57
6331 8106 2.877043 AGGCAAGTTCAGCAAAACAG 57.123 45.000 4.34 0.00 0.00 3.16
6332 8107 3.608316 AAAGGCAAGTTCAGCAAAACA 57.392 38.095 4.34 0.00 0.00 2.83
6333 8108 3.063861 CCAAAAGGCAAGTTCAGCAAAAC 59.936 43.478 0.00 0.00 0.00 2.43
6334 8109 3.269178 CCAAAAGGCAAGTTCAGCAAAA 58.731 40.909 0.00 0.00 0.00 2.44
6335 8110 2.419851 CCCAAAAGGCAAGTTCAGCAAA 60.420 45.455 0.00 0.00 0.00 3.68
6336 8111 1.138661 CCCAAAAGGCAAGTTCAGCAA 59.861 47.619 0.00 0.00 0.00 3.91
6337 8112 0.752054 CCCAAAAGGCAAGTTCAGCA 59.248 50.000 0.00 0.00 0.00 4.41
6338 8113 0.033920 CCCCAAAAGGCAAGTTCAGC 59.966 55.000 0.00 0.00 0.00 4.26
6348 8123 0.617535 CCCCTAAAGGCCCCAAAAGG 60.618 60.000 0.00 0.00 0.00 3.11
6349 8124 0.617535 CCCCCTAAAGGCCCCAAAAG 60.618 60.000 0.00 0.00 0.00 2.27
6350 8125 1.080927 TCCCCCTAAAGGCCCCAAAA 61.081 55.000 0.00 0.00 0.00 2.44
6351 8126 1.080927 TTCCCCCTAAAGGCCCCAAA 61.081 55.000 0.00 0.00 0.00 3.28
6352 8127 1.468405 TTCCCCCTAAAGGCCCCAA 60.468 57.895 0.00 0.00 0.00 4.12
6353 8128 2.214554 TTCCCCCTAAAGGCCCCA 59.785 61.111 0.00 0.00 0.00 4.96
6354 8129 1.515754 AAGTTCCCCCTAAAGGCCCC 61.516 60.000 0.00 0.00 0.00 5.80
6355 8130 0.324368 CAAGTTCCCCCTAAAGGCCC 60.324 60.000 0.00 0.00 0.00 5.80
6356 8131 0.408309 ACAAGTTCCCCCTAAAGGCC 59.592 55.000 0.00 0.00 0.00 5.19
6357 8132 1.074889 TGACAAGTTCCCCCTAAAGGC 59.925 52.381 0.00 0.00 0.00 4.35
6358 8133 3.421844 CTTGACAAGTTCCCCCTAAAGG 58.578 50.000 7.05 0.00 0.00 3.11
6359 8134 2.820197 GCTTGACAAGTTCCCCCTAAAG 59.180 50.000 16.39 0.00 0.00 1.85
6360 8135 2.490168 GGCTTGACAAGTTCCCCCTAAA 60.490 50.000 16.39 0.00 0.00 1.85
6361 8136 1.074889 GGCTTGACAAGTTCCCCCTAA 59.925 52.381 16.39 0.00 0.00 2.69
6362 8137 0.696501 GGCTTGACAAGTTCCCCCTA 59.303 55.000 16.39 0.00 0.00 3.53
6363 8138 1.068352 AGGCTTGACAAGTTCCCCCT 61.068 55.000 16.39 10.66 0.00 4.79
6364 8139 0.178961 AAGGCTTGACAAGTTCCCCC 60.179 55.000 16.39 8.61 0.00 5.40
6365 8140 1.341209 CAAAGGCTTGACAAGTTCCCC 59.659 52.381 16.39 8.96 34.14 4.81
6366 8141 1.341209 CCAAAGGCTTGACAAGTTCCC 59.659 52.381 16.39 9.30 34.14 3.97
6367 8142 1.341209 CCCAAAGGCTTGACAAGTTCC 59.659 52.381 16.39 9.98 34.14 3.62
6368 8143 2.800881 CCCAAAGGCTTGACAAGTTC 57.199 50.000 16.39 9.32 34.14 3.01
6380 8155 1.463553 AAACAGCGAAGGCCCAAAGG 61.464 55.000 0.00 0.00 41.24 3.11
6381 8156 0.389025 AAAACAGCGAAGGCCCAAAG 59.611 50.000 0.00 0.00 41.24 2.77
6382 8157 0.827368 AAAAACAGCGAAGGCCCAAA 59.173 45.000 0.00 0.00 41.24 3.28
6383 8158 2.510664 AAAAACAGCGAAGGCCCAA 58.489 47.368 0.00 0.00 41.24 4.12
6384 8159 4.268720 AAAAACAGCGAAGGCCCA 57.731 50.000 0.00 0.00 41.24 5.36
6405 8180 8.780249 GCTACAACTACTACCATTTTCTTCAAA 58.220 33.333 0.00 0.00 0.00 2.69
6406 8181 7.389607 GGCTACAACTACTACCATTTTCTTCAA 59.610 37.037 0.00 0.00 0.00 2.69
6407 8182 6.877322 GGCTACAACTACTACCATTTTCTTCA 59.123 38.462 0.00 0.00 0.00 3.02
6408 8183 6.315642 GGGCTACAACTACTACCATTTTCTTC 59.684 42.308 0.00 0.00 0.00 2.87
6409 8184 6.178324 GGGCTACAACTACTACCATTTTCTT 58.822 40.000 0.00 0.00 0.00 2.52
6410 8185 5.626116 CGGGCTACAACTACTACCATTTTCT 60.626 44.000 0.00 0.00 0.00 2.52
6411 8186 4.569564 CGGGCTACAACTACTACCATTTTC 59.430 45.833 0.00 0.00 0.00 2.29
6412 8187 4.223477 TCGGGCTACAACTACTACCATTTT 59.777 41.667 0.00 0.00 0.00 1.82
6413 8188 3.770933 TCGGGCTACAACTACTACCATTT 59.229 43.478 0.00 0.00 0.00 2.32
6414 8189 3.368248 TCGGGCTACAACTACTACCATT 58.632 45.455 0.00 0.00 0.00 3.16
6415 8190 3.022557 TCGGGCTACAACTACTACCAT 57.977 47.619 0.00 0.00 0.00 3.55
6416 8191 2.512692 TCGGGCTACAACTACTACCA 57.487 50.000 0.00 0.00 0.00 3.25
6417 8192 4.099113 AGAAATCGGGCTACAACTACTACC 59.901 45.833 0.00 0.00 0.00 3.18
6418 8193 5.259832 AGAAATCGGGCTACAACTACTAC 57.740 43.478 0.00 0.00 0.00 2.73
6419 8194 6.015688 CCATAGAAATCGGGCTACAACTACTA 60.016 42.308 0.00 0.00 0.00 1.82
6420 8195 5.221461 CCATAGAAATCGGGCTACAACTACT 60.221 44.000 0.00 0.00 0.00 2.57
6421 8196 4.989168 CCATAGAAATCGGGCTACAACTAC 59.011 45.833 0.00 0.00 0.00 2.73
6422 8197 4.652421 ACCATAGAAATCGGGCTACAACTA 59.348 41.667 0.00 0.00 0.00 2.24
6423 8198 3.454812 ACCATAGAAATCGGGCTACAACT 59.545 43.478 0.00 0.00 0.00 3.16
6424 8199 3.805207 ACCATAGAAATCGGGCTACAAC 58.195 45.455 0.00 0.00 0.00 3.32
6425 8200 4.497291 AACCATAGAAATCGGGCTACAA 57.503 40.909 0.00 0.00 0.00 2.41
6426 8201 4.497291 AAACCATAGAAATCGGGCTACA 57.503 40.909 0.00 0.00 0.00 2.74
6427 8202 4.497507 GCAAAACCATAGAAATCGGGCTAC 60.498 45.833 0.00 0.00 0.00 3.58
6428 8203 3.630312 GCAAAACCATAGAAATCGGGCTA 59.370 43.478 0.00 0.00 0.00 3.93
6429 8204 2.427095 GCAAAACCATAGAAATCGGGCT 59.573 45.455 0.00 0.00 0.00 5.19
6430 8205 2.427095 AGCAAAACCATAGAAATCGGGC 59.573 45.455 0.00 0.00 0.00 6.13
6431 8206 3.694072 TCAGCAAAACCATAGAAATCGGG 59.306 43.478 0.00 0.00 0.00 5.14
6432 8207 4.963276 TCAGCAAAACCATAGAAATCGG 57.037 40.909 0.00 0.00 0.00 4.18
6433 8208 5.942872 AGTTCAGCAAAACCATAGAAATCG 58.057 37.500 0.00 0.00 0.00 3.34
6434 8209 7.370383 TGAAGTTCAGCAAAACCATAGAAATC 58.630 34.615 0.08 0.00 0.00 2.17
6435 8210 7.288810 TGAAGTTCAGCAAAACCATAGAAAT 57.711 32.000 0.08 0.00 0.00 2.17
6436 8211 6.707440 TGAAGTTCAGCAAAACCATAGAAA 57.293 33.333 0.08 0.00 0.00 2.52
6437 8212 6.707440 TTGAAGTTCAGCAAAACCATAGAA 57.293 33.333 5.56 0.00 0.00 2.10
6438 8213 5.278463 GCTTGAAGTTCAGCAAAACCATAGA 60.278 40.000 17.22 0.00 0.00 1.98
6439 8214 4.919754 GCTTGAAGTTCAGCAAAACCATAG 59.080 41.667 17.22 6.13 0.00 2.23
6440 8215 4.261994 GGCTTGAAGTTCAGCAAAACCATA 60.262 41.667 21.15 0.00 0.00 2.74
6441 8216 3.493176 GGCTTGAAGTTCAGCAAAACCAT 60.493 43.478 21.15 0.00 0.00 3.55
6474 8359 5.424895 CCACCATCCATCAAAATTCCCTAAA 59.575 40.000 0.00 0.00 0.00 1.85
6515 8400 4.101741 CCCCAAAATTTACTCCAACCACAA 59.898 41.667 0.00 0.00 0.00 3.33
6541 8426 7.439955 GGGAGTACCTTAAAAACCACATTTTTG 59.560 37.037 7.46 0.00 42.16 2.44
6563 8448 5.542779 CCTTCTAAATTATGACGGAGGGAG 58.457 45.833 0.00 0.00 0.00 4.30
6564 8449 4.202326 GCCTTCTAAATTATGACGGAGGGA 60.202 45.833 7.14 0.00 0.00 4.20
6565 8450 4.065789 GCCTTCTAAATTATGACGGAGGG 58.934 47.826 7.14 0.00 0.00 4.30
6566 8451 4.511826 GTGCCTTCTAAATTATGACGGAGG 59.488 45.833 7.14 0.00 0.00 4.30
6567 8452 5.116180 TGTGCCTTCTAAATTATGACGGAG 58.884 41.667 7.14 0.00 0.00 4.63
6568 8453 5.092554 TGTGCCTTCTAAATTATGACGGA 57.907 39.130 7.14 0.00 0.00 4.69
6569 8454 4.876107 ACTGTGCCTTCTAAATTATGACGG 59.124 41.667 0.00 0.00 0.00 4.79
6570 8455 6.422776 AACTGTGCCTTCTAAATTATGACG 57.577 37.500 0.00 0.00 0.00 4.35
6576 8461 9.620660 CGTAAATTTAACTGTGCCTTCTAAATT 57.379 29.630 0.00 1.69 34.98 1.82
6577 8462 8.789762 ACGTAAATTTAACTGTGCCTTCTAAAT 58.210 29.630 0.00 0.00 0.00 1.40
6578 8463 8.071368 CACGTAAATTTAACTGTGCCTTCTAAA 58.929 33.333 0.00 0.00 0.00 1.85
6579 8464 7.577979 CACGTAAATTTAACTGTGCCTTCTAA 58.422 34.615 0.00 0.00 0.00 2.10
6580 8465 6.347888 GCACGTAAATTTAACTGTGCCTTCTA 60.348 38.462 25.89 0.00 45.07 2.10
6581 8466 5.562113 GCACGTAAATTTAACTGTGCCTTCT 60.562 40.000 25.89 0.00 45.07 2.85
6582 8467 4.615541 GCACGTAAATTTAACTGTGCCTTC 59.384 41.667 25.89 10.57 45.07 3.46
6583 8468 4.542735 GCACGTAAATTTAACTGTGCCTT 58.457 39.130 25.89 0.00 45.07 4.35
6584 8469 4.155310 GCACGTAAATTTAACTGTGCCT 57.845 40.909 25.89 0.00 45.07 4.75
6586 8471 3.547601 ACGCACGTAAATTTAACTGTGC 58.452 40.909 26.15 26.15 46.73 4.57
6587 8472 5.114423 GGAAACGCACGTAAATTTAACTGTG 59.886 40.000 16.39 16.39 0.00 3.66
6588 8473 5.207033 GGAAACGCACGTAAATTTAACTGT 58.793 37.500 0.00 0.00 0.00 3.55
6589 8474 5.114423 GTGGAAACGCACGTAAATTTAACTG 59.886 40.000 0.00 0.00 41.67 3.16
6590 8475 5.207033 GTGGAAACGCACGTAAATTTAACT 58.793 37.500 0.00 0.00 41.67 2.24
6591 8476 5.470168 GTGGAAACGCACGTAAATTTAAC 57.530 39.130 0.00 0.00 41.67 2.01
6604 8489 2.812011 ACCTTGTCTATTGTGGAAACGC 59.188 45.455 0.00 0.00 42.66 4.84
6605 8490 5.432885 AAACCTTGTCTATTGTGGAAACG 57.567 39.130 0.00 0.00 0.00 3.60
6606 8491 6.072119 CCCTAAACCTTGTCTATTGTGGAAAC 60.072 42.308 0.00 0.00 0.00 2.78
6607 8492 6.007703 CCCTAAACCTTGTCTATTGTGGAAA 58.992 40.000 0.00 0.00 0.00 3.13
6608 8493 5.566469 CCCTAAACCTTGTCTATTGTGGAA 58.434 41.667 0.00 0.00 0.00 3.53
6609 8494 4.566907 GCCCTAAACCTTGTCTATTGTGGA 60.567 45.833 0.00 0.00 0.00 4.02
6610 8495 3.694566 GCCCTAAACCTTGTCTATTGTGG 59.305 47.826 0.00 0.00 0.00 4.17
6611 8496 3.374058 CGCCCTAAACCTTGTCTATTGTG 59.626 47.826 0.00 0.00 0.00 3.33
6612 8497 3.606687 CGCCCTAAACCTTGTCTATTGT 58.393 45.455 0.00 0.00 0.00 2.71
6613 8498 2.354821 GCGCCCTAAACCTTGTCTATTG 59.645 50.000 0.00 0.00 0.00 1.90
6614 8499 2.026636 TGCGCCCTAAACCTTGTCTATT 60.027 45.455 4.18 0.00 0.00 1.73
6615 8500 1.557832 TGCGCCCTAAACCTTGTCTAT 59.442 47.619 4.18 0.00 0.00 1.98
6616 8501 0.978151 TGCGCCCTAAACCTTGTCTA 59.022 50.000 4.18 0.00 0.00 2.59
6617 8502 0.328258 ATGCGCCCTAAACCTTGTCT 59.672 50.000 4.18 0.00 0.00 3.41
6618 8503 1.135402 CAATGCGCCCTAAACCTTGTC 60.135 52.381 4.18 0.00 0.00 3.18
6619 8504 0.887933 CAATGCGCCCTAAACCTTGT 59.112 50.000 4.18 0.00 0.00 3.16
6620 8505 0.458370 GCAATGCGCCCTAAACCTTG 60.458 55.000 4.18 0.00 32.94 3.61
6621 8506 0.897863 TGCAATGCGCCCTAAACCTT 60.898 50.000 4.18 0.00 41.33 3.50
6622 8507 0.684153 ATGCAATGCGCCCTAAACCT 60.684 50.000 4.18 0.00 41.33 3.50
6623 8508 0.175531 AATGCAATGCGCCCTAAACC 59.824 50.000 4.18 0.00 41.33 3.27
6624 8509 2.008752 AAATGCAATGCGCCCTAAAC 57.991 45.000 4.18 0.00 41.33 2.01
6625 8510 4.399004 AATAAATGCAATGCGCCCTAAA 57.601 36.364 4.18 0.00 41.33 1.85
6626 8511 4.099266 AGAAATAAATGCAATGCGCCCTAA 59.901 37.500 4.18 0.00 41.33 2.69
6627 8512 3.636300 AGAAATAAATGCAATGCGCCCTA 59.364 39.130 4.18 0.00 41.33 3.53
6628 8513 2.431782 AGAAATAAATGCAATGCGCCCT 59.568 40.909 4.18 0.00 41.33 5.19
6629 8514 2.825205 AGAAATAAATGCAATGCGCCC 58.175 42.857 4.18 0.00 41.33 6.13
6630 8515 4.610945 ACTAGAAATAAATGCAATGCGCC 58.389 39.130 4.18 0.00 41.33 6.53
6631 8516 5.340667 GCTACTAGAAATAAATGCAATGCGC 59.659 40.000 0.00 0.00 42.89 6.09
6632 8517 6.662616 AGCTACTAGAAATAAATGCAATGCG 58.337 36.000 0.00 0.00 0.00 4.73
6633 8518 9.604626 CTTAGCTACTAGAAATAAATGCAATGC 57.395 33.333 0.00 0.00 0.00 3.56
6634 8519 9.604626 GCTTAGCTACTAGAAATAAATGCAATG 57.395 33.333 0.00 0.00 0.00 2.82
6635 8520 9.342308 TGCTTAGCTACTAGAAATAAATGCAAT 57.658 29.630 5.60 0.00 0.00 3.56
6636 8521 8.731275 TGCTTAGCTACTAGAAATAAATGCAA 57.269 30.769 5.60 0.00 0.00 4.08
6637 8522 8.731275 TTGCTTAGCTACTAGAAATAAATGCA 57.269 30.769 5.60 0.00 0.00 3.96
6643 8528 9.856488 CGGAATATTGCTTAGCTACTAGAAATA 57.144 33.333 5.60 7.91 0.00 1.40
6644 8529 8.585881 TCGGAATATTGCTTAGCTACTAGAAAT 58.414 33.333 5.60 4.41 0.00 2.17
6645 8530 7.948357 TCGGAATATTGCTTAGCTACTAGAAA 58.052 34.615 5.60 0.00 0.00 2.52
6646 8531 7.520451 TCGGAATATTGCTTAGCTACTAGAA 57.480 36.000 5.60 0.00 0.00 2.10
6647 8532 7.704578 ATCGGAATATTGCTTAGCTACTAGA 57.295 36.000 5.60 0.00 0.00 2.43
6650 8535 9.191479 AGTATATCGGAATATTGCTTAGCTACT 57.809 33.333 5.60 0.00 30.59 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.