Multiple sequence alignment - TraesCS1B01G203300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G203300 chr1B 100.000 5263 0 0 1 5263 365018305 365023567 0.000000e+00 9720
1 TraesCS1B01G203300 chr1B 99.800 500 1 0 1 500 366290786 366290287 0.000000e+00 918
2 TraesCS1B01G203300 chr1B 98.649 74 0 1 427 500 365013977 365013905 4.280000e-26 130
3 TraesCS1B01G203300 chr1D 95.227 4819 130 32 497 5261 231467735 231462963 0.000000e+00 7533
4 TraesCS1B01G203300 chr1A 95.134 4829 125 35 497 5261 317810678 317815460 0.000000e+00 7515
5 TraesCS1B01G203300 chr7B 99.799 497 0 1 1 496 711537862 711538358 0.000000e+00 911
6 TraesCS1B01G203300 chr7B 99.398 498 1 1 1 496 685273142 685272645 0.000000e+00 902
7 TraesCS1B01G203300 chr7B 100.000 71 0 0 427 497 685277470 685277540 1.190000e-26 132
8 TraesCS1B01G203300 chr7B 100.000 71 0 0 427 497 711533534 711533464 1.190000e-26 132
9 TraesCS1B01G203300 chr2B 99.197 498 2 1 1 496 68607145 68607642 0.000000e+00 896
10 TraesCS1B01G203300 chr2B 87.455 279 35 0 3176 3454 578137511 578137233 6.570000e-84 322
11 TraesCS1B01G203300 chr2B 85.897 156 22 0 2086 2241 578138610 578138455 3.260000e-37 167
12 TraesCS1B01G203300 chr4D 97.791 498 9 1 1 496 182087100 182087597 0.000000e+00 857
13 TraesCS1B01G203300 chr5A 95.960 495 18 1 4 496 221348413 221348907 0.000000e+00 802
14 TraesCS1B01G203300 chr5A 86.885 305 33 6 3177 3479 708807355 708807056 8.450000e-88 335
15 TraesCS1B01G203300 chr2A 88.172 279 33 0 3176 3454 637678932 637678654 3.040000e-87 333
16 TraesCS1B01G203300 chr2A 85.897 156 22 0 2086 2241 637680040 637679885 3.260000e-37 167
17 TraesCS1B01G203300 chr4B 86.799 303 32 7 3177 3475 671632078 671631780 1.090000e-86 331
18 TraesCS1B01G203300 chrUn 87.633 283 31 4 3177 3457 28396958 28397238 5.080000e-85 326
19 TraesCS1B01G203300 chr2D 87.455 279 35 0 3176 3454 492509715 492509437 6.570000e-84 322
20 TraesCS1B01G203300 chr2D 84.713 157 22 2 2086 2241 492510808 492510653 7.060000e-34 156
21 TraesCS1B01G203300 chr6D 86.667 285 33 4 3172 3454 313281969 313281688 1.420000e-80 311
22 TraesCS1B01G203300 chr6D 83.660 153 23 2 2085 2236 313282694 313282543 5.490000e-30 143
23 TraesCS1B01G203300 chr3B 89.510 143 15 0 6 148 620611667 620611809 1.160000e-41 182
24 TraesCS1B01G203300 chr6B 82.051 156 26 2 2082 2236 512872807 512872961 1.190000e-26 132
25 TraesCS1B01G203300 chr6A 82.237 152 27 0 2085 2236 450465984 450465833 1.190000e-26 132


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G203300 chr1B 365018305 365023567 5262 False 9720.0 9720 100.0000 1 5263 1 chr1B.!!$F1 5262
1 TraesCS1B01G203300 chr1D 231462963 231467735 4772 True 7533.0 7533 95.2270 497 5261 1 chr1D.!!$R1 4764
2 TraesCS1B01G203300 chr1A 317810678 317815460 4782 False 7515.0 7515 95.1340 497 5261 1 chr1A.!!$F1 4764
3 TraesCS1B01G203300 chr2B 578137233 578138610 1377 True 244.5 322 86.6760 2086 3454 2 chr2B.!!$R1 1368
4 TraesCS1B01G203300 chr2A 637678654 637680040 1386 True 250.0 333 87.0345 2086 3454 2 chr2A.!!$R1 1368
5 TraesCS1B01G203300 chr2D 492509437 492510808 1371 True 239.0 322 86.0840 2086 3454 2 chr2D.!!$R1 1368
6 TraesCS1B01G203300 chr6D 313281688 313282694 1006 True 227.0 311 85.1635 2085 3454 2 chr6D.!!$R1 1369

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
327 328 0.034616 GCAGATAGCTTGGCCGATCT 59.965 55.0 1.11 1.11 41.15 2.75 F
1483 1518 0.035056 CTGGAGGCCGGAAATTGTCT 60.035 55.0 5.05 0.00 29.82 3.41 F
1724 1770 0.466124 AGTAAGCTTCAGATCCGGCC 59.534 55.0 0.00 0.00 0.00 6.13 F
1725 1771 0.876342 GTAAGCTTCAGATCCGGCCG 60.876 60.0 21.04 21.04 0.00 6.13 F
2223 2272 0.957395 AGACGTACCGCTTCTTCCGA 60.957 55.0 0.00 0.00 0.00 4.55 F
4036 4376 1.694955 GACGAGGACGAGGACGACTC 61.695 65.0 0.00 0.00 42.66 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1726 1772 0.552848 TTCTCTGGGATTGATGCCCC 59.447 55.000 0.00 0.0 45.4 5.80 R
2394 2569 0.538287 AGAAGCTCAAGTTGCCCACC 60.538 55.000 0.00 0.0 0.0 4.61 R
3258 3598 2.245438 CTTCCCAGAGCGGTCCCTTC 62.245 65.000 11.73 0.0 0.0 3.46 R
3633 3973 3.569690 CCGCCGCCATTACCGTTC 61.570 66.667 0.00 0.0 0.0 3.95 R
4100 4440 0.111061 TCTGATGTTGTTGCTGCCCT 59.889 50.000 0.00 0.0 0.0 5.19 R
4937 5304 2.239654 CACCTTTCTTCCTCATGGCCTA 59.760 50.000 3.32 0.0 0.0 3.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.751552 GTACGACTAGCATGTACGCC 58.248 55.000 0.00 0.00 30.35 5.68
21 22 0.305617 TACGACTAGCATGTACGCCG 59.694 55.000 0.00 0.00 0.00 6.46
22 23 2.293627 CGACTAGCATGTACGCCGC 61.294 63.158 0.00 0.00 0.00 6.53
23 24 1.949631 GACTAGCATGTACGCCGCC 60.950 63.158 0.00 0.00 0.00 6.13
24 25 2.661866 CTAGCATGTACGCCGCCC 60.662 66.667 0.00 0.00 0.00 6.13
25 26 3.439513 CTAGCATGTACGCCGCCCA 62.440 63.158 0.00 0.00 0.00 5.36
26 27 3.439513 TAGCATGTACGCCGCCCAG 62.440 63.158 0.00 0.00 0.00 4.45
78 79 1.082235 GTCTATACGACGAGGCCGC 60.082 63.158 0.00 0.00 39.95 6.53
79 80 2.254651 CTATACGACGAGGCCGCC 59.745 66.667 0.00 0.00 39.95 6.13
80 81 2.203252 TATACGACGAGGCCGCCT 60.203 61.111 13.16 13.16 39.95 5.52
81 82 2.185103 CTATACGACGAGGCCGCCTC 62.185 65.000 27.17 27.17 46.44 4.70
92 93 3.452786 CCGCCTCGCCTCTCTGAA 61.453 66.667 0.00 0.00 0.00 3.02
93 94 2.103934 CGCCTCGCCTCTCTGAAG 59.896 66.667 0.00 0.00 0.00 3.02
94 95 2.498726 GCCTCGCCTCTCTGAAGG 59.501 66.667 2.66 2.66 39.62 3.46
95 96 2.055042 GCCTCGCCTCTCTGAAGGA 61.055 63.158 9.23 0.00 38.87 3.36
96 97 2.015227 GCCTCGCCTCTCTGAAGGAG 62.015 65.000 9.23 6.66 43.12 3.69
97 98 1.437160 CTCGCCTCTCTGAAGGAGC 59.563 63.158 9.23 0.00 41.60 4.70
98 99 2.015227 CTCGCCTCTCTGAAGGAGCC 62.015 65.000 9.23 0.00 41.60 4.70
99 100 2.498726 GCCTCTCTGAAGGAGCCG 59.501 66.667 9.23 0.00 41.60 5.52
100 101 3.087666 GCCTCTCTGAAGGAGCCGG 62.088 68.421 0.00 0.00 41.60 6.13
101 102 2.498726 CTCTCTGAAGGAGCCGGC 59.501 66.667 21.89 21.89 41.60 6.13
102 103 3.077556 TCTCTGAAGGAGCCGGCC 61.078 66.667 26.15 15.07 41.60 6.13
103 104 4.521062 CTCTGAAGGAGCCGGCCG 62.521 72.222 26.15 21.04 35.08 6.13
105 106 4.821589 CTGAAGGAGCCGGCCGTC 62.822 72.222 26.15 15.79 37.02 4.79
128 129 4.593864 GCCGACGAGCAGGGGATC 62.594 72.222 0.00 0.00 0.00 3.36
133 134 4.598894 CGAGCAGGGGATCGCCTG 62.599 72.222 40.68 40.68 46.63 4.85
134 135 4.247380 GAGCAGGGGATCGCCTGG 62.247 72.222 42.86 30.39 34.91 4.45
136 137 4.554036 GCAGGGGATCGCCTGGTC 62.554 72.222 42.86 30.45 34.91 4.02
137 138 4.227134 CAGGGGATCGCCTGGTCG 62.227 72.222 38.71 21.47 0.00 4.79
142 143 4.899239 GATCGCCTGGTCGCCCTG 62.899 72.222 5.78 0.00 0.00 4.45
148 149 3.003173 CTGGTCGCCCTGGAGGAA 61.003 66.667 0.00 0.00 38.24 3.36
149 150 3.316573 CTGGTCGCCCTGGAGGAAC 62.317 68.421 0.00 0.00 38.24 3.62
150 151 4.097361 GGTCGCCCTGGAGGAACC 62.097 72.222 0.00 0.00 38.24 3.62
151 152 4.452733 GTCGCCCTGGAGGAACCG 62.453 72.222 0.00 0.00 42.61 4.44
154 155 4.097361 GCCCTGGAGGAACCGGTC 62.097 72.222 8.04 0.72 43.20 4.79
162 163 3.468063 GGAACCGGTCCTGACACT 58.532 61.111 8.04 0.00 43.98 3.55
163 164 1.004918 GGAACCGGTCCTGACACTG 60.005 63.158 8.04 0.00 43.98 3.66
164 165 1.668151 GAACCGGTCCTGACACTGC 60.668 63.158 8.04 0.00 0.00 4.40
165 166 3.178540 AACCGGTCCTGACACTGCC 62.179 63.158 8.04 0.00 0.00 4.85
166 167 4.742201 CCGGTCCTGACACTGCCG 62.742 72.222 0.00 0.00 41.82 5.69
167 168 3.680786 CGGTCCTGACACTGCCGA 61.681 66.667 0.00 0.00 44.57 5.54
168 169 2.048127 GGTCCTGACACTGCCGAC 60.048 66.667 0.00 0.00 0.00 4.79
169 170 2.734591 GTCCTGACACTGCCGACA 59.265 61.111 0.00 0.00 0.00 4.35
170 171 1.069090 GTCCTGACACTGCCGACAA 59.931 57.895 0.00 0.00 0.00 3.18
171 172 0.946221 GTCCTGACACTGCCGACAAG 60.946 60.000 0.00 0.00 0.00 3.16
172 173 2.320587 CCTGACACTGCCGACAAGC 61.321 63.158 0.00 0.00 0.00 4.01
173 174 1.595109 CTGACACTGCCGACAAGCA 60.595 57.895 0.00 0.00 41.46 3.91
179 180 3.329889 TGCCGACAAGCAGGGGAT 61.330 61.111 0.00 0.00 38.00 3.85
180 181 2.514824 GCCGACAAGCAGGGGATC 60.515 66.667 0.00 0.00 0.00 3.36
181 182 2.202932 CCGACAAGCAGGGGATCG 60.203 66.667 0.00 0.00 0.00 3.69
182 183 2.892425 CGACAAGCAGGGGATCGC 60.892 66.667 0.06 0.06 0.00 4.58
183 184 2.514824 GACAAGCAGGGGATCGCC 60.515 66.667 20.86 20.86 0.00 5.54
184 185 3.011517 ACAAGCAGGGGATCGCCT 61.012 61.111 24.97 24.97 0.00 5.52
185 186 2.203126 CAAGCAGGGGATCGCCTC 60.203 66.667 27.52 20.64 33.50 4.70
186 187 3.854669 AAGCAGGGGATCGCCTCG 61.855 66.667 27.52 21.90 40.72 4.63
187 188 4.841617 AGCAGGGGATCGCCTCGA 62.842 66.667 27.52 0.00 40.72 4.04
188 189 4.593864 GCAGGGGATCGCCTCGAC 62.594 72.222 27.52 16.27 40.72 4.20
189 190 4.271816 CAGGGGATCGCCTCGACG 62.272 72.222 27.52 13.37 40.72 5.12
192 193 4.286320 GGGATCGCCTCGACGCAT 62.286 66.667 7.18 0.08 39.18 4.73
193 194 2.731348 GGATCGCCTCGACGCATC 60.731 66.667 7.18 8.24 39.18 3.91
202 203 4.933064 CGACGCATCGGAGGAGGC 62.933 72.222 0.00 0.00 46.06 4.70
207 208 3.473647 CATCGGAGGAGGCAGCCA 61.474 66.667 15.80 0.00 0.00 4.75
208 209 2.447379 ATCGGAGGAGGCAGCCAT 60.447 61.111 15.80 0.00 0.00 4.40
209 210 2.815945 ATCGGAGGAGGCAGCCATG 61.816 63.158 15.80 0.00 0.00 3.66
210 211 4.559063 CGGAGGAGGCAGCCATGG 62.559 72.222 15.80 7.63 0.00 3.66
211 212 4.201122 GGAGGAGGCAGCCATGGG 62.201 72.222 15.80 0.00 0.00 4.00
212 213 4.201122 GAGGAGGCAGCCATGGGG 62.201 72.222 15.80 0.00 37.18 4.96
233 234 2.264124 TCCAACGAGGAGGAAGTCG 58.736 57.895 0.00 0.00 43.07 4.18
234 235 1.446272 CCAACGAGGAGGAAGTCGC 60.446 63.158 0.00 0.00 41.22 5.19
235 236 1.446272 CAACGAGGAGGAAGTCGCC 60.446 63.158 0.00 0.00 39.89 5.54
241 242 4.856607 GAGGAAGTCGCCTCGCCG 62.857 72.222 0.00 0.00 44.52 6.46
251 252 3.458163 CCTCGCCGCCTGAAGGTA 61.458 66.667 0.00 0.00 37.57 3.08
252 253 2.105128 CTCGCCGCCTGAAGGTAG 59.895 66.667 0.00 0.00 37.57 3.18
253 254 4.143333 TCGCCGCCTGAAGGTAGC 62.143 66.667 0.00 0.76 37.57 3.58
254 255 4.451150 CGCCGCCTGAAGGTAGCA 62.451 66.667 11.64 0.00 35.83 3.49
255 256 2.820037 GCCGCCTGAAGGTAGCAC 60.820 66.667 7.60 0.00 36.03 4.40
256 257 2.662596 CCGCCTGAAGGTAGCACA 59.337 61.111 0.00 0.00 37.57 4.57
257 258 1.221840 CCGCCTGAAGGTAGCACAT 59.778 57.895 0.00 0.00 37.57 3.21
258 259 0.811616 CCGCCTGAAGGTAGCACATC 60.812 60.000 0.00 0.00 37.57 3.06
259 260 0.811616 CGCCTGAAGGTAGCACATCC 60.812 60.000 0.00 0.00 37.57 3.51
260 261 0.543749 GCCTGAAGGTAGCACATCCT 59.456 55.000 0.00 0.00 37.57 3.24
261 262 1.745141 GCCTGAAGGTAGCACATCCTG 60.745 57.143 0.00 0.00 37.57 3.86
262 263 1.833630 CCTGAAGGTAGCACATCCTGA 59.166 52.381 0.00 0.00 33.97 3.86
263 264 2.419297 CCTGAAGGTAGCACATCCTGAC 60.419 54.545 0.00 0.00 33.97 3.51
264 265 1.204704 TGAAGGTAGCACATCCTGACG 59.795 52.381 0.00 0.00 33.97 4.35
265 266 0.108138 AAGGTAGCACATCCTGACGC 60.108 55.000 0.00 0.00 33.97 5.19
266 267 1.878522 GGTAGCACATCCTGACGCG 60.879 63.158 3.53 3.53 0.00 6.01
267 268 1.153823 GTAGCACATCCTGACGCGT 60.154 57.895 13.85 13.85 0.00 6.01
268 269 1.138883 TAGCACATCCTGACGCGTC 59.861 57.895 31.66 31.66 0.00 5.19
269 270 2.592623 TAGCACATCCTGACGCGTCG 62.593 60.000 31.88 25.06 0.00 5.12
270 271 2.178273 CACATCCTGACGCGTCGA 59.822 61.111 31.88 24.31 0.00 4.20
271 272 1.443702 CACATCCTGACGCGTCGAA 60.444 57.895 31.88 20.61 0.00 3.71
272 273 1.006825 CACATCCTGACGCGTCGAAA 61.007 55.000 31.88 20.26 0.00 3.46
273 274 0.732880 ACATCCTGACGCGTCGAAAG 60.733 55.000 31.88 23.52 0.00 2.62
274 275 0.456142 CATCCTGACGCGTCGAAAGA 60.456 55.000 31.88 24.40 38.16 2.52
275 276 0.179161 ATCCTGACGCGTCGAAAGAG 60.179 55.000 31.88 22.82 43.49 2.85
276 277 1.209383 CCTGACGCGTCGAAAGAGA 59.791 57.895 31.88 13.47 43.49 3.10
277 278 0.179161 CCTGACGCGTCGAAAGAGAT 60.179 55.000 31.88 0.00 43.49 2.75
278 279 1.184349 CTGACGCGTCGAAAGAGATC 58.816 55.000 31.88 7.53 43.49 2.75
279 280 0.520619 TGACGCGTCGAAAGAGATCG 60.521 55.000 31.88 0.00 43.49 3.69
280 281 1.789591 GACGCGTCGAAAGAGATCGC 61.790 60.000 25.19 4.44 43.49 4.58
281 282 1.867812 CGCGTCGAAAGAGATCGCA 60.868 57.895 13.56 0.00 45.77 5.10
282 283 1.202973 CGCGTCGAAAGAGATCGCAT 61.203 55.000 13.56 0.00 45.77 4.73
283 284 0.500597 GCGTCGAAAGAGATCGCATC 59.499 55.000 9.13 0.00 45.01 3.91
284 285 1.124462 CGTCGAAAGAGATCGCATCC 58.876 55.000 0.00 0.00 43.49 3.51
285 286 1.533965 CGTCGAAAGAGATCGCATCCA 60.534 52.381 0.00 0.00 43.49 3.41
286 287 1.855360 GTCGAAAGAGATCGCATCCAC 59.145 52.381 0.00 0.00 43.49 4.02
287 288 1.476488 TCGAAAGAGATCGCATCCACA 59.524 47.619 0.00 0.00 42.44 4.17
288 289 1.590238 CGAAAGAGATCGCATCCACAC 59.410 52.381 0.00 0.00 35.85 3.82
289 290 2.621338 GAAAGAGATCGCATCCACACA 58.379 47.619 0.00 0.00 0.00 3.72
290 291 2.306341 AAGAGATCGCATCCACACAG 57.694 50.000 0.00 0.00 0.00 3.66
291 292 0.179089 AGAGATCGCATCCACACAGC 60.179 55.000 0.00 0.00 0.00 4.40
292 293 1.153289 AGATCGCATCCACACAGCC 60.153 57.895 0.00 0.00 0.00 4.85
293 294 1.450134 GATCGCATCCACACAGCCA 60.450 57.895 0.00 0.00 0.00 4.75
294 295 0.816825 GATCGCATCCACACAGCCAT 60.817 55.000 0.00 0.00 0.00 4.40
295 296 1.099295 ATCGCATCCACACAGCCATG 61.099 55.000 0.00 0.00 0.00 3.66
296 297 1.746239 CGCATCCACACAGCCATGA 60.746 57.895 0.00 0.00 0.00 3.07
297 298 1.712018 CGCATCCACACAGCCATGAG 61.712 60.000 0.00 0.00 0.00 2.90
298 299 1.381928 GCATCCACACAGCCATGAGG 61.382 60.000 0.00 0.00 38.23 3.86
299 300 0.750546 CATCCACACAGCCATGAGGG 60.751 60.000 0.00 0.00 40.85 4.30
300 301 1.929860 ATCCACACAGCCATGAGGGG 61.930 60.000 0.00 0.00 41.62 4.79
301 302 2.605607 CCACACAGCCATGAGGGGA 61.606 63.158 0.00 0.00 42.80 4.81
302 303 1.379916 CACACAGCCATGAGGGGAA 59.620 57.895 0.00 0.00 37.04 3.97
303 304 0.962356 CACACAGCCATGAGGGGAAC 60.962 60.000 0.00 0.00 37.04 3.62
304 305 1.136329 ACACAGCCATGAGGGGAACT 61.136 55.000 0.00 0.00 37.04 3.01
305 306 0.679002 CACAGCCATGAGGGGAACTG 60.679 60.000 0.00 0.00 37.04 3.16
306 307 1.077212 CAGCCATGAGGGGAACTGG 60.077 63.158 0.00 0.00 37.04 4.00
307 308 1.229951 AGCCATGAGGGGAACTGGA 60.230 57.895 0.00 0.00 37.04 3.86
308 309 1.225704 GCCATGAGGGGAACTGGAG 59.774 63.158 0.00 0.00 37.04 3.86
309 310 1.225704 CCATGAGGGGAACTGGAGC 59.774 63.158 0.00 0.00 0.00 4.70
310 311 1.565390 CCATGAGGGGAACTGGAGCA 61.565 60.000 0.00 0.00 0.00 4.26
311 312 0.107312 CATGAGGGGAACTGGAGCAG 60.107 60.000 0.00 0.00 37.52 4.24
312 313 0.252881 ATGAGGGGAACTGGAGCAGA 60.253 55.000 0.00 0.00 35.18 4.26
313 314 0.252881 TGAGGGGAACTGGAGCAGAT 60.253 55.000 0.00 0.00 35.18 2.90
314 315 1.008327 TGAGGGGAACTGGAGCAGATA 59.992 52.381 0.00 0.00 35.18 1.98
315 316 1.691434 GAGGGGAACTGGAGCAGATAG 59.309 57.143 0.00 0.00 35.18 2.08
316 317 0.107643 GGGGAACTGGAGCAGATAGC 59.892 60.000 0.00 0.00 46.19 2.97
325 326 4.787871 GCAGATAGCTTGGCCGAT 57.212 55.556 0.00 0.00 41.15 4.18
326 327 2.537863 GCAGATAGCTTGGCCGATC 58.462 57.895 0.00 0.00 41.15 3.69
327 328 0.034616 GCAGATAGCTTGGCCGATCT 59.965 55.000 1.11 1.11 41.15 2.75
328 329 1.793258 CAGATAGCTTGGCCGATCTG 58.207 55.000 6.60 10.89 40.53 2.90
329 330 0.683973 AGATAGCTTGGCCGATCTGG 59.316 55.000 6.60 0.00 42.50 3.86
330 331 0.321122 GATAGCTTGGCCGATCTGGG 60.321 60.000 6.60 0.00 38.63 4.45
340 341 4.593864 GATCTGGGCGAGCCGGTC 62.594 72.222 1.90 0.00 36.85 4.79
352 353 4.796231 CCGGTCGTCGCTTGGGAG 62.796 72.222 0.00 0.00 37.59 4.30
353 354 3.744719 CGGTCGTCGCTTGGGAGA 61.745 66.667 0.00 0.00 0.00 3.71
354 355 2.182030 GGTCGTCGCTTGGGAGAG 59.818 66.667 0.00 0.00 0.00 3.20
355 356 2.341101 GGTCGTCGCTTGGGAGAGA 61.341 63.158 0.00 0.00 0.00 3.10
356 357 1.585006 GTCGTCGCTTGGGAGAGAA 59.415 57.895 0.00 0.00 33.35 2.87
357 358 0.038526 GTCGTCGCTTGGGAGAGAAA 60.039 55.000 0.00 0.00 33.35 2.52
358 359 0.243907 TCGTCGCTTGGGAGAGAAAG 59.756 55.000 0.00 0.00 33.35 2.62
359 360 0.737715 CGTCGCTTGGGAGAGAAAGG 60.738 60.000 0.00 0.00 33.35 3.11
360 361 0.608640 GTCGCTTGGGAGAGAAAGGA 59.391 55.000 0.00 0.00 33.35 3.36
361 362 1.002087 GTCGCTTGGGAGAGAAAGGAA 59.998 52.381 0.00 0.00 33.35 3.36
362 363 1.697432 TCGCTTGGGAGAGAAAGGAAA 59.303 47.619 0.00 0.00 0.00 3.13
363 364 1.807142 CGCTTGGGAGAGAAAGGAAAC 59.193 52.381 0.00 0.00 0.00 2.78
364 365 2.163509 GCTTGGGAGAGAAAGGAAACC 58.836 52.381 0.00 0.00 0.00 3.27
365 366 2.427506 CTTGGGAGAGAAAGGAAACCG 58.572 52.381 0.00 0.00 0.00 4.44
366 367 0.036306 TGGGAGAGAAAGGAAACCGC 59.964 55.000 0.00 0.00 0.00 5.68
367 368 0.677098 GGGAGAGAAAGGAAACCGCC 60.677 60.000 0.00 0.00 0.00 6.13
368 369 1.019805 GGAGAGAAAGGAAACCGCCG 61.020 60.000 0.00 0.00 0.00 6.46
369 370 1.003718 AGAGAAAGGAAACCGCCGG 60.004 57.895 0.00 0.00 0.00 6.13
370 371 2.033602 AGAAAGGAAACCGCCGGG 59.966 61.111 8.57 0.00 40.11 5.73
371 372 2.032987 GAAAGGAAACCGCCGGGA 59.967 61.111 8.57 0.00 36.97 5.14
372 373 1.378119 GAAAGGAAACCGCCGGGAT 60.378 57.895 8.57 0.00 36.97 3.85
373 374 0.963856 GAAAGGAAACCGCCGGGATT 60.964 55.000 8.57 1.27 36.97 3.01
374 375 0.541063 AAAGGAAACCGCCGGGATTT 60.541 50.000 8.57 0.00 36.97 2.17
375 376 0.541063 AAGGAAACCGCCGGGATTTT 60.541 50.000 8.57 0.00 36.97 1.82
376 377 0.541063 AGGAAACCGCCGGGATTTTT 60.541 50.000 8.57 0.00 36.97 1.94
408 409 8.871686 TTTTATCTTTTCCTTTTCAGTTCAGC 57.128 30.769 0.00 0.00 0.00 4.26
409 410 4.552166 TCTTTTCCTTTTCAGTTCAGCG 57.448 40.909 0.00 0.00 0.00 5.18
410 411 2.774439 TTTCCTTTTCAGTTCAGCGC 57.226 45.000 0.00 0.00 0.00 5.92
411 412 0.586319 TTCCTTTTCAGTTCAGCGCG 59.414 50.000 0.00 0.00 0.00 6.86
412 413 1.441016 CCTTTTCAGTTCAGCGCGC 60.441 57.895 26.66 26.66 0.00 6.86
413 414 1.789739 CTTTTCAGTTCAGCGCGCG 60.790 57.895 28.44 28.44 0.00 6.86
414 415 3.855209 TTTTCAGTTCAGCGCGCGC 62.855 57.895 45.10 45.10 42.33 6.86
449 450 3.407657 CGTCGGACGGACTCCTAG 58.592 66.667 22.18 0.00 43.79 3.02
450 451 1.449246 CGTCGGACGGACTCCTAGT 60.449 63.158 22.18 0.00 43.79 2.57
451 452 1.427592 CGTCGGACGGACTCCTAGTC 61.428 65.000 22.18 0.00 44.32 2.59
452 453 0.392193 GTCGGACGGACTCCTAGTCA 60.392 60.000 9.15 0.00 46.79 3.41
453 454 0.107800 TCGGACGGACTCCTAGTCAG 60.108 60.000 9.15 7.43 46.79 3.51
454 455 1.716826 CGGACGGACTCCTAGTCAGC 61.717 65.000 9.15 2.34 46.79 4.26
455 456 1.385756 GGACGGACTCCTAGTCAGCC 61.386 65.000 9.15 7.03 46.79 4.85
456 457 0.394625 GACGGACTCCTAGTCAGCCT 60.395 60.000 9.15 0.00 46.79 4.58
457 458 0.681564 ACGGACTCCTAGTCAGCCTG 60.682 60.000 9.15 0.00 46.79 4.85
458 459 0.681564 CGGACTCCTAGTCAGCCTGT 60.682 60.000 9.15 0.00 46.79 4.00
459 460 1.408405 CGGACTCCTAGTCAGCCTGTA 60.408 57.143 9.15 0.00 46.79 2.74
460 461 2.736347 GGACTCCTAGTCAGCCTGTAA 58.264 52.381 9.15 0.00 46.79 2.41
461 462 3.097614 GGACTCCTAGTCAGCCTGTAAA 58.902 50.000 9.15 0.00 46.79 2.01
462 463 3.514309 GGACTCCTAGTCAGCCTGTAAAA 59.486 47.826 9.15 0.00 46.79 1.52
463 464 4.496360 GACTCCTAGTCAGCCTGTAAAAC 58.504 47.826 2.22 0.00 44.45 2.43
464 465 3.056749 ACTCCTAGTCAGCCTGTAAAACG 60.057 47.826 0.00 0.00 0.00 3.60
465 466 2.000447 CCTAGTCAGCCTGTAAAACGC 59.000 52.381 0.00 0.00 0.00 4.84
466 467 2.000447 CTAGTCAGCCTGTAAAACGCC 59.000 52.381 0.00 0.00 0.00 5.68
467 468 0.605589 AGTCAGCCTGTAAAACGCCC 60.606 55.000 0.00 0.00 0.00 6.13
468 469 1.669760 TCAGCCTGTAAAACGCCCG 60.670 57.895 0.00 0.00 0.00 6.13
469 470 1.964373 CAGCCTGTAAAACGCCCGT 60.964 57.895 0.00 0.00 0.00 5.28
470 471 0.671163 CAGCCTGTAAAACGCCCGTA 60.671 55.000 0.00 0.00 0.00 4.02
471 472 0.035176 AGCCTGTAAAACGCCCGTAA 59.965 50.000 0.00 0.00 0.00 3.18
472 473 1.089112 GCCTGTAAAACGCCCGTAAT 58.911 50.000 0.00 0.00 0.00 1.89
473 474 1.063027 GCCTGTAAAACGCCCGTAATC 59.937 52.381 0.00 0.00 0.00 1.75
474 475 2.624636 CCTGTAAAACGCCCGTAATCT 58.375 47.619 0.00 0.00 0.00 2.40
475 476 2.606272 CCTGTAAAACGCCCGTAATCTC 59.394 50.000 0.00 0.00 0.00 2.75
476 477 2.606272 CTGTAAAACGCCCGTAATCTCC 59.394 50.000 0.00 0.00 0.00 3.71
477 478 2.234414 TGTAAAACGCCCGTAATCTCCT 59.766 45.455 0.00 0.00 0.00 3.69
478 479 1.734163 AAAACGCCCGTAATCTCCTG 58.266 50.000 0.00 0.00 0.00 3.86
479 480 0.611714 AAACGCCCGTAATCTCCTGT 59.388 50.000 0.00 0.00 0.00 4.00
480 481 1.477553 AACGCCCGTAATCTCCTGTA 58.522 50.000 0.00 0.00 0.00 2.74
481 482 0.743097 ACGCCCGTAATCTCCTGTAC 59.257 55.000 0.00 0.00 0.00 2.90
482 483 0.317603 CGCCCGTAATCTCCTGTACG 60.318 60.000 0.00 0.00 42.10 3.67
483 484 0.743097 GCCCGTAATCTCCTGTACGT 59.257 55.000 0.00 0.00 41.13 3.57
484 485 1.535437 GCCCGTAATCTCCTGTACGTG 60.535 57.143 0.00 0.00 41.13 4.49
485 486 1.747355 CCCGTAATCTCCTGTACGTGT 59.253 52.381 0.00 0.00 41.13 4.49
486 487 2.945008 CCCGTAATCTCCTGTACGTGTA 59.055 50.000 0.00 0.00 41.13 2.90
487 488 3.003068 CCCGTAATCTCCTGTACGTGTAG 59.997 52.174 0.00 0.00 41.13 2.74
488 489 3.547613 CCGTAATCTCCTGTACGTGTAGC 60.548 52.174 0.00 0.00 41.13 3.58
489 490 3.064408 CGTAATCTCCTGTACGTGTAGCA 59.936 47.826 0.00 0.00 38.58 3.49
490 491 4.261072 CGTAATCTCCTGTACGTGTAGCAT 60.261 45.833 0.00 0.00 38.58 3.79
491 492 4.737855 AATCTCCTGTACGTGTAGCATT 57.262 40.909 0.00 0.00 0.00 3.56
492 493 5.847111 AATCTCCTGTACGTGTAGCATTA 57.153 39.130 0.00 0.00 0.00 1.90
493 494 6.406692 AATCTCCTGTACGTGTAGCATTAT 57.593 37.500 0.00 0.00 0.00 1.28
494 495 5.847111 TCTCCTGTACGTGTAGCATTATT 57.153 39.130 0.00 0.00 0.00 1.40
495 496 5.588240 TCTCCTGTACGTGTAGCATTATTG 58.412 41.667 0.00 0.00 0.00 1.90
532 533 0.730265 TCGTCTGCACACAACAAACC 59.270 50.000 0.00 0.00 0.00 3.27
570 571 4.377431 CGCTGTACTCAACATTTCACTTCC 60.377 45.833 0.00 0.00 37.50 3.46
625 626 6.779539 TCTCCTTCACAGCTATCATATTCTCA 59.220 38.462 0.00 0.00 0.00 3.27
639 640 5.315645 TCATATTCTCATCCCCTCTCTCTCT 59.684 44.000 0.00 0.00 0.00 3.10
640 641 3.593442 TTCTCATCCCCTCTCTCTCTC 57.407 52.381 0.00 0.00 0.00 3.20
733 738 2.285668 TCCCCTCTCCCTTGCAGG 60.286 66.667 0.00 0.00 34.30 4.85
788 793 5.609284 TGTACTAGAGCTCCTCTATTCCTCT 59.391 44.000 10.93 0.00 41.49 3.69
789 794 5.663158 ACTAGAGCTCCTCTATTCCTCTT 57.337 43.478 10.93 0.00 41.49 2.85
790 795 5.385198 ACTAGAGCTCCTCTATTCCTCTTG 58.615 45.833 10.93 0.00 41.49 3.02
791 796 4.264373 AGAGCTCCTCTATTCCTCTTGT 57.736 45.455 10.93 0.00 39.28 3.16
882 914 2.562298 CTCTCTCTGTGCTCTTTCTGGT 59.438 50.000 0.00 0.00 0.00 4.00
939 971 5.130809 TCATGTACTGATCATTCCATCACCA 59.869 40.000 0.00 0.00 0.00 4.17
957 989 0.178981 CACCATTCCCTATGCCCCTG 60.179 60.000 0.00 0.00 32.60 4.45
1040 1075 4.864334 GCATCAGGGTGGAGGCCG 62.864 72.222 0.00 0.00 38.57 6.13
1097 1132 1.519455 CATTCTCGCCGTCCAGGAC 60.519 63.158 9.92 9.92 45.00 3.85
1483 1518 0.035056 CTGGAGGCCGGAAATTGTCT 60.035 55.000 5.05 0.00 29.82 3.41
1487 1522 0.676782 AGGCCGGAAATTGTCTTCGG 60.677 55.000 5.05 0.00 43.13 4.30
1665 1700 1.002857 CTTCCCCACCTTTCCCTGAT 58.997 55.000 0.00 0.00 0.00 2.90
1723 1769 2.362717 ACTAGTAAGCTTCAGATCCGGC 59.637 50.000 0.00 0.00 0.00 6.13
1724 1770 0.466124 AGTAAGCTTCAGATCCGGCC 59.534 55.000 0.00 0.00 0.00 6.13
1725 1771 0.876342 GTAAGCTTCAGATCCGGCCG 60.876 60.000 21.04 21.04 0.00 6.13
1726 1772 2.028125 TAAGCTTCAGATCCGGCCGG 62.028 60.000 39.13 39.13 0.00 6.13
1788 1836 5.050567 CCTCTGAATTTCTGCAAACAAAAGC 60.051 40.000 0.00 0.00 0.00 3.51
1986 2035 5.004922 TGCATGATGTGTGAGTTCGTATA 57.995 39.130 0.00 0.00 0.00 1.47
1988 2037 6.744112 TGCATGATGTGTGAGTTCGTATATA 58.256 36.000 0.00 0.00 0.00 0.86
1991 2040 7.329471 GCATGATGTGTGAGTTCGTATATATGT 59.671 37.037 0.00 0.00 0.00 2.29
1992 2041 8.642020 CATGATGTGTGAGTTCGTATATATGTG 58.358 37.037 1.91 0.00 0.00 3.21
1993 2042 6.640907 TGATGTGTGAGTTCGTATATATGTGC 59.359 38.462 1.91 0.00 0.00 4.57
1994 2043 4.973663 TGTGTGAGTTCGTATATATGTGCG 59.026 41.667 3.59 3.59 0.00 5.34
1995 2044 3.978855 TGTGAGTTCGTATATATGTGCGC 59.021 43.478 0.00 0.00 0.00 6.09
1996 2045 3.057739 GTGAGTTCGTATATATGTGCGCG 59.942 47.826 0.00 0.00 0.00 6.86
2223 2272 0.957395 AGACGTACCGCTTCTTCCGA 60.957 55.000 0.00 0.00 0.00 4.55
2310 2482 4.660938 GTGCCTGGGGTGGTGGTC 62.661 72.222 0.00 0.00 0.00 4.02
2458 2636 2.031516 GACGAGGACGACTCCGACA 61.032 63.158 0.00 0.00 43.57 4.35
3531 3871 3.057548 CACGCCAATGCAGCTCCA 61.058 61.111 0.00 0.00 37.32 3.86
3558 3898 1.736645 CATCGAGGCGTTCACCGTT 60.737 57.895 0.00 0.00 39.32 4.44
3561 3901 2.970324 GAGGCGTTCACCGTTGCA 60.970 61.111 0.00 0.00 39.32 4.08
3615 3955 2.665185 GTGGCCAAGAACGACGCT 60.665 61.111 7.24 0.00 0.00 5.07
4036 4376 1.694955 GACGAGGACGAGGACGACTC 61.695 65.000 0.00 0.00 42.66 3.36
4100 4440 3.674997 GCAGTACAAGATCCAGTTCCAA 58.325 45.455 0.00 0.00 0.00 3.53
4578 4943 4.528596 CGATATACACCTTCCCTCTCCATT 59.471 45.833 0.00 0.00 0.00 3.16
4708 5073 6.313658 TGATTTGTCGTGGTGATCAATAAGAG 59.686 38.462 0.00 0.00 0.00 2.85
4767 5134 3.703052 ACTACTACATCGGGGTGGTAAAG 59.297 47.826 5.45 0.73 34.85 1.85
4798 5165 1.610363 TAAGATCGATCCAGCTCGCT 58.390 50.000 21.66 0.00 38.52 4.93
4816 5183 2.770532 GCTCGCGGTTAAAATGAAGAC 58.229 47.619 6.13 0.00 0.00 3.01
4828 5195 2.820059 ATGAAGACAAGAGCGTGTGA 57.180 45.000 0.00 0.00 0.00 3.58
4840 5207 4.377021 AGAGCGTGTGATTGTTACTTTCA 58.623 39.130 0.00 0.00 0.00 2.69
4903 5270 3.451894 GGGCTGCAATGGAACGGG 61.452 66.667 0.50 0.00 0.00 5.28
4930 5297 3.663995 TGAAAAAGGATCGACGGTACA 57.336 42.857 0.00 0.00 0.00 2.90
4937 5304 1.664321 GATCGACGGTACAGGCCTGT 61.664 60.000 38.92 38.92 46.87 4.00
4954 5321 2.239654 CCTGTAGGCCATGAGGAAGAAA 59.760 50.000 5.01 0.00 36.89 2.52
5043 5411 7.857569 ACCGAAATTGTCCATTATGTATTACG 58.142 34.615 0.00 0.00 0.00 3.18
5137 5505 0.662619 TTCTTGCTGTTCTTGCACCG 59.337 50.000 0.00 0.00 40.40 4.94
5175 5543 9.259832 AGTATATATGAACTCCATCACTGCATA 57.740 33.333 0.00 0.00 36.71 3.14
5261 5629 9.733556 TTCACCTCTGATTATACTCTAGATCTC 57.266 37.037 0.00 0.00 0.00 2.75
5262 5630 8.885346 TCACCTCTGATTATACTCTAGATCTCA 58.115 37.037 0.00 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.751552 GGCGTACATGCTAGTCGTAC 58.248 55.000 0.00 7.86 33.67 3.67
2 3 0.305617 CGGCGTACATGCTAGTCGTA 59.694 55.000 0.00 0.00 34.52 3.43
3 4 1.063649 CGGCGTACATGCTAGTCGT 59.936 57.895 0.00 0.00 34.52 4.34
4 5 2.293627 GCGGCGTACATGCTAGTCG 61.294 63.158 9.37 4.82 34.52 4.18
5 6 1.949631 GGCGGCGTACATGCTAGTC 60.950 63.158 9.37 0.00 34.52 2.59
6 7 2.106332 GGCGGCGTACATGCTAGT 59.894 61.111 9.37 0.00 34.52 2.57
7 8 2.661866 GGGCGGCGTACATGCTAG 60.662 66.667 9.37 0.00 34.52 3.42
8 9 3.439513 CTGGGCGGCGTACATGCTA 62.440 63.158 9.37 0.00 34.52 3.49
9 10 4.838152 CTGGGCGGCGTACATGCT 62.838 66.667 9.37 0.00 34.52 3.79
60 61 1.082235 GCGGCCTCGTCGTATAGAC 60.082 63.158 0.00 0.00 46.16 2.59
61 62 2.256591 GGCGGCCTCGTCGTATAGA 61.257 63.158 12.87 0.00 38.89 1.98
62 63 2.185103 GAGGCGGCCTCGTCGTATAG 62.185 65.000 31.44 0.00 46.91 1.31
63 64 2.203252 AGGCGGCCTCGTCGTATA 60.203 61.111 17.69 0.00 46.91 1.47
64 65 3.593794 GAGGCGGCCTCGTCGTAT 61.594 66.667 31.44 2.62 46.91 3.06
75 76 3.423162 CTTCAGAGAGGCGAGGCGG 62.423 68.421 0.00 0.00 0.00 6.13
76 77 2.103934 CTTCAGAGAGGCGAGGCG 59.896 66.667 0.00 0.00 0.00 5.52
77 78 2.015227 CTCCTTCAGAGAGGCGAGGC 62.015 65.000 0.00 0.00 46.50 4.70
78 79 2.015227 GCTCCTTCAGAGAGGCGAGG 62.015 65.000 0.00 0.00 46.50 4.63
79 80 1.437160 GCTCCTTCAGAGAGGCGAG 59.563 63.158 0.00 0.00 46.50 5.03
80 81 2.055042 GGCTCCTTCAGAGAGGCGA 61.055 63.158 0.00 0.00 46.50 5.54
81 82 2.498726 GGCTCCTTCAGAGAGGCG 59.501 66.667 0.00 0.00 46.50 5.52
83 84 3.087666 GCCGGCTCCTTCAGAGAGG 62.088 68.421 22.15 0.00 46.50 3.69
84 85 2.498726 GCCGGCTCCTTCAGAGAG 59.501 66.667 22.15 0.00 46.50 3.20
85 86 3.077556 GGCCGGCTCCTTCAGAGA 61.078 66.667 28.56 0.00 46.50 3.10
86 87 4.521062 CGGCCGGCTCCTTCAGAG 62.521 72.222 28.56 2.86 46.29 3.35
88 89 4.821589 GACGGCCGGCTCCTTCAG 62.822 72.222 31.76 11.32 0.00 3.02
111 112 4.593864 GATCCCCTGCTCGTCGGC 62.594 72.222 0.00 0.00 0.00 5.54
112 113 4.271816 CGATCCCCTGCTCGTCGG 62.272 72.222 0.00 0.00 0.00 4.79
113 114 4.933064 GCGATCCCCTGCTCGTCG 62.933 72.222 0.00 0.00 37.23 5.12
114 115 4.593864 GGCGATCCCCTGCTCGTC 62.594 72.222 0.00 0.00 37.23 4.20
116 117 4.598894 CAGGCGATCCCCTGCTCG 62.599 72.222 13.42 0.00 45.28 5.03
134 135 4.452733 CGGTTCCTCCAGGGCGAC 62.453 72.222 0.00 0.00 35.57 5.19
137 138 4.097361 GACCGGTTCCTCCAGGGC 62.097 72.222 9.42 0.00 35.34 5.19
138 139 3.400054 GGACCGGTTCCTCCAGGG 61.400 72.222 9.42 0.00 41.95 4.45
145 146 1.004918 CAGTGTCAGGACCGGTTCC 60.005 63.158 9.42 11.98 46.33 3.62
146 147 1.668151 GCAGTGTCAGGACCGGTTC 60.668 63.158 9.42 6.68 0.00 3.62
147 148 2.426023 GCAGTGTCAGGACCGGTT 59.574 61.111 9.42 0.00 0.00 4.44
148 149 3.626924 GGCAGTGTCAGGACCGGT 61.627 66.667 6.92 6.92 0.00 5.28
149 150 4.742201 CGGCAGTGTCAGGACCGG 62.742 72.222 0.00 0.00 40.18 5.28
150 151 3.680786 TCGGCAGTGTCAGGACCG 61.681 66.667 0.00 0.00 45.15 4.79
151 152 2.048127 GTCGGCAGTGTCAGGACC 60.048 66.667 0.00 0.00 0.00 4.46
152 153 0.946221 CTTGTCGGCAGTGTCAGGAC 60.946 60.000 0.00 0.00 0.00 3.85
153 154 1.367471 CTTGTCGGCAGTGTCAGGA 59.633 57.895 0.00 0.00 0.00 3.86
154 155 2.320587 GCTTGTCGGCAGTGTCAGG 61.321 63.158 0.00 0.00 0.00 3.86
155 156 1.595109 TGCTTGTCGGCAGTGTCAG 60.595 57.895 0.00 0.00 37.29 3.51
156 157 2.503546 TGCTTGTCGGCAGTGTCA 59.496 55.556 0.00 0.00 37.29 3.58
162 163 3.329542 GATCCCCTGCTTGTCGGCA 62.330 63.158 0.00 0.00 40.15 5.69
163 164 2.514824 GATCCCCTGCTTGTCGGC 60.515 66.667 0.00 0.00 0.00 5.54
164 165 2.202932 CGATCCCCTGCTTGTCGG 60.203 66.667 0.00 0.00 0.00 4.79
165 166 2.892425 GCGATCCCCTGCTTGTCG 60.892 66.667 0.00 0.00 35.56 4.35
166 167 2.514824 GGCGATCCCCTGCTTGTC 60.515 66.667 0.00 0.00 0.00 3.18
167 168 3.011517 AGGCGATCCCCTGCTTGT 61.012 61.111 0.00 0.00 32.84 3.16
168 169 2.203126 GAGGCGATCCCCTGCTTG 60.203 66.667 2.89 0.00 34.69 4.01
169 170 3.854669 CGAGGCGATCCCCTGCTT 61.855 66.667 2.89 0.00 34.69 3.91
170 171 4.841617 TCGAGGCGATCCCCTGCT 62.842 66.667 2.89 0.00 34.69 4.24
171 172 4.593864 GTCGAGGCGATCCCCTGC 62.594 72.222 2.89 0.00 38.42 4.85
172 173 4.271816 CGTCGAGGCGATCCCCTG 62.272 72.222 2.89 0.00 38.42 4.45
175 176 4.286320 ATGCGTCGAGGCGATCCC 62.286 66.667 23.54 0.00 38.42 3.85
176 177 2.731348 GATGCGTCGAGGCGATCC 60.731 66.667 23.54 9.76 38.42 3.36
186 187 3.781770 CTGCCTCCTCCGATGCGTC 62.782 68.421 0.00 0.00 32.72 5.19
187 188 3.842923 CTGCCTCCTCCGATGCGT 61.843 66.667 0.00 0.00 32.72 5.24
189 190 4.925861 GGCTGCCTCCTCCGATGC 62.926 72.222 12.43 0.00 0.00 3.91
190 191 2.815945 ATGGCTGCCTCCTCCGATG 61.816 63.158 21.03 0.00 0.00 3.84
191 192 2.447379 ATGGCTGCCTCCTCCGAT 60.447 61.111 21.03 0.00 0.00 4.18
192 193 3.473647 CATGGCTGCCTCCTCCGA 61.474 66.667 21.03 0.00 0.00 4.55
193 194 4.559063 CCATGGCTGCCTCCTCCG 62.559 72.222 21.03 1.70 0.00 4.63
194 195 4.201122 CCCATGGCTGCCTCCTCC 62.201 72.222 21.03 0.00 0.00 4.30
195 196 4.201122 CCCCATGGCTGCCTCCTC 62.201 72.222 21.03 0.00 0.00 3.71
205 206 1.825191 CTCGTTGGATGCCCCATGG 60.825 63.158 4.14 4.14 46.10 3.66
206 207 1.825191 CCTCGTTGGATGCCCCATG 60.825 63.158 0.00 0.00 46.10 3.66
207 208 1.987807 CTCCTCGTTGGATGCCCCAT 61.988 60.000 0.85 0.00 46.10 4.00
208 209 2.609299 TCCTCGTTGGATGCCCCA 60.609 61.111 0.00 0.00 44.93 4.96
209 210 2.190578 CTCCTCGTTGGATGCCCC 59.809 66.667 0.85 0.00 45.16 5.80
210 211 1.910580 TTCCTCCTCGTTGGATGCCC 61.911 60.000 0.85 0.00 45.16 5.36
211 212 0.462759 CTTCCTCCTCGTTGGATGCC 60.463 60.000 0.85 0.00 45.16 4.40
212 213 0.250513 ACTTCCTCCTCGTTGGATGC 59.749 55.000 0.85 0.00 45.16 3.91
213 214 1.469940 CGACTTCCTCCTCGTTGGATG 60.470 57.143 0.85 0.00 45.16 3.51
214 215 0.818296 CGACTTCCTCCTCGTTGGAT 59.182 55.000 0.85 0.00 45.16 3.41
215 216 1.874345 GCGACTTCCTCCTCGTTGGA 61.874 60.000 0.00 0.58 43.86 3.53
216 217 1.446272 GCGACTTCCTCCTCGTTGG 60.446 63.158 0.00 0.00 32.30 3.77
217 218 1.446272 GGCGACTTCCTCCTCGTTG 60.446 63.158 0.00 0.00 32.30 4.10
218 219 1.596895 GAGGCGACTTCCTCCTCGTT 61.597 60.000 0.00 0.00 45.40 3.85
219 220 2.035940 AGGCGACTTCCTCCTCGT 59.964 61.111 0.00 0.00 37.44 4.18
220 221 2.802106 GAGGCGACTTCCTCCTCG 59.198 66.667 0.00 0.00 45.40 4.63
234 235 3.432051 CTACCTTCAGGCGGCGAGG 62.432 68.421 21.50 21.50 39.32 4.63
235 236 2.105128 CTACCTTCAGGCGGCGAG 59.895 66.667 12.98 0.00 39.32 5.03
236 237 4.143333 GCTACCTTCAGGCGGCGA 62.143 66.667 12.98 0.76 39.32 5.54
237 238 4.451150 TGCTACCTTCAGGCGGCG 62.451 66.667 0.51 0.51 38.32 6.46
238 239 2.820037 GTGCTACCTTCAGGCGGC 60.820 66.667 0.00 0.00 39.32 6.53
239 240 0.811616 GATGTGCTACCTTCAGGCGG 60.812 60.000 0.00 0.00 39.32 6.13
240 241 0.811616 GGATGTGCTACCTTCAGGCG 60.812 60.000 0.00 0.00 39.32 5.52
241 242 0.543749 AGGATGTGCTACCTTCAGGC 59.456 55.000 0.00 0.00 39.32 4.85
242 243 1.833630 TCAGGATGTGCTACCTTCAGG 59.166 52.381 0.00 0.00 38.28 3.86
243 244 2.736719 CGTCAGGATGTGCTACCTTCAG 60.737 54.545 0.00 0.00 37.40 3.02
244 245 1.204704 CGTCAGGATGTGCTACCTTCA 59.795 52.381 0.00 0.00 37.40 3.02
245 246 1.927895 CGTCAGGATGTGCTACCTTC 58.072 55.000 0.00 0.00 37.40 3.46
246 247 0.108138 GCGTCAGGATGTGCTACCTT 60.108 55.000 0.00 0.00 36.07 3.50
247 248 1.517832 GCGTCAGGATGTGCTACCT 59.482 57.895 0.00 0.00 36.07 3.08
248 249 1.878522 CGCGTCAGGATGTGCTACC 60.879 63.158 0.00 0.00 36.64 3.18
249 250 1.140407 GACGCGTCAGGATGTGCTAC 61.140 60.000 33.09 1.78 36.64 3.58
250 251 1.138883 GACGCGTCAGGATGTGCTA 59.861 57.895 33.09 0.00 36.64 3.49
251 252 2.125912 GACGCGTCAGGATGTGCT 60.126 61.111 33.09 0.00 36.64 4.40
252 253 3.545481 CGACGCGTCAGGATGTGC 61.545 66.667 35.71 9.36 37.40 4.57
253 254 1.006825 TTTCGACGCGTCAGGATGTG 61.007 55.000 35.71 19.26 37.40 3.21
254 255 0.732880 CTTTCGACGCGTCAGGATGT 60.733 55.000 35.71 0.00 37.40 3.06
255 256 0.456142 TCTTTCGACGCGTCAGGATG 60.456 55.000 35.71 23.63 37.54 3.51
256 257 0.179161 CTCTTTCGACGCGTCAGGAT 60.179 55.000 35.71 1.33 0.00 3.24
257 258 1.209383 CTCTTTCGACGCGTCAGGA 59.791 57.895 35.71 23.98 0.00 3.86
258 259 0.179161 ATCTCTTTCGACGCGTCAGG 60.179 55.000 35.71 22.11 0.00 3.86
259 260 1.184349 GATCTCTTTCGACGCGTCAG 58.816 55.000 35.71 27.28 0.00 3.51
260 261 0.520619 CGATCTCTTTCGACGCGTCA 60.521 55.000 35.71 21.40 41.62 4.35
261 262 1.789591 GCGATCTCTTTCGACGCGTC 61.790 60.000 28.96 28.96 41.62 5.19
262 263 1.868251 GCGATCTCTTTCGACGCGT 60.868 57.895 13.85 13.85 41.62 6.01
263 264 2.906910 GCGATCTCTTTCGACGCG 59.093 61.111 3.53 3.53 41.62 6.01
265 266 1.124462 GGATGCGATCTCTTTCGACG 58.876 55.000 0.00 0.00 41.62 5.12
266 267 1.855360 GTGGATGCGATCTCTTTCGAC 59.145 52.381 0.00 0.00 41.62 4.20
267 268 1.476488 TGTGGATGCGATCTCTTTCGA 59.524 47.619 0.00 0.00 41.62 3.71
268 269 1.590238 GTGTGGATGCGATCTCTTTCG 59.410 52.381 0.00 0.00 41.99 3.46
269 270 2.606725 CTGTGTGGATGCGATCTCTTTC 59.393 50.000 0.00 0.00 0.00 2.62
270 271 2.625737 CTGTGTGGATGCGATCTCTTT 58.374 47.619 0.00 0.00 0.00 2.52
271 272 1.741732 GCTGTGTGGATGCGATCTCTT 60.742 52.381 0.00 0.00 0.00 2.85
272 273 0.179089 GCTGTGTGGATGCGATCTCT 60.179 55.000 0.00 0.00 0.00 3.10
273 274 1.156645 GGCTGTGTGGATGCGATCTC 61.157 60.000 0.00 0.00 0.00 2.75
274 275 1.153289 GGCTGTGTGGATGCGATCT 60.153 57.895 0.00 0.00 0.00 2.75
275 276 0.816825 ATGGCTGTGTGGATGCGATC 60.817 55.000 0.00 0.00 0.00 3.69
276 277 1.099295 CATGGCTGTGTGGATGCGAT 61.099 55.000 0.00 0.00 0.00 4.58
277 278 1.746239 CATGGCTGTGTGGATGCGA 60.746 57.895 0.00 0.00 0.00 5.10
278 279 1.712018 CTCATGGCTGTGTGGATGCG 61.712 60.000 0.00 0.00 0.00 4.73
279 280 1.381928 CCTCATGGCTGTGTGGATGC 61.382 60.000 0.00 0.00 35.31 3.91
280 281 0.750546 CCCTCATGGCTGTGTGGATG 60.751 60.000 11.40 0.00 35.31 3.51
281 282 1.611419 CCCTCATGGCTGTGTGGAT 59.389 57.895 11.40 0.00 35.31 3.41
282 283 2.605607 CCCCTCATGGCTGTGTGGA 61.606 63.158 11.40 0.00 35.31 4.02
283 284 2.044650 CCCCTCATGGCTGTGTGG 60.045 66.667 0.00 5.08 33.58 4.17
284 285 0.962356 GTTCCCCTCATGGCTGTGTG 60.962 60.000 0.00 0.00 0.00 3.82
285 286 1.136329 AGTTCCCCTCATGGCTGTGT 61.136 55.000 0.00 0.00 0.00 3.72
286 287 0.679002 CAGTTCCCCTCATGGCTGTG 60.679 60.000 0.00 0.00 0.00 3.66
287 288 1.687612 CAGTTCCCCTCATGGCTGT 59.312 57.895 0.00 0.00 0.00 4.40
288 289 1.077212 CCAGTTCCCCTCATGGCTG 60.077 63.158 0.00 0.00 0.00 4.85
289 290 1.229951 TCCAGTTCCCCTCATGGCT 60.230 57.895 0.00 0.00 32.63 4.75
290 291 1.225704 CTCCAGTTCCCCTCATGGC 59.774 63.158 0.00 0.00 32.63 4.40
291 292 1.225704 GCTCCAGTTCCCCTCATGG 59.774 63.158 0.00 0.00 0.00 3.66
292 293 0.107312 CTGCTCCAGTTCCCCTCATG 60.107 60.000 0.00 0.00 0.00 3.07
293 294 0.252881 TCTGCTCCAGTTCCCCTCAT 60.253 55.000 0.00 0.00 32.61 2.90
294 295 0.252881 ATCTGCTCCAGTTCCCCTCA 60.253 55.000 0.00 0.00 32.61 3.86
295 296 1.691434 CTATCTGCTCCAGTTCCCCTC 59.309 57.143 0.00 0.00 32.61 4.30
296 297 1.799933 CTATCTGCTCCAGTTCCCCT 58.200 55.000 0.00 0.00 32.61 4.79
297 298 0.107643 GCTATCTGCTCCAGTTCCCC 59.892 60.000 0.00 0.00 38.95 4.81
298 299 3.696306 GCTATCTGCTCCAGTTCCC 57.304 57.895 0.00 0.00 38.95 3.97
308 309 0.034616 AGATCGGCCAAGCTATCTGC 59.965 55.000 2.24 0.00 43.29 4.26
309 310 1.607509 CCAGATCGGCCAAGCTATCTG 60.608 57.143 12.96 12.96 42.61 2.90
310 311 0.683973 CCAGATCGGCCAAGCTATCT 59.316 55.000 2.24 0.00 33.83 1.98
311 312 0.321122 CCCAGATCGGCCAAGCTATC 60.321 60.000 2.24 0.00 0.00 2.08
312 313 1.757306 CCCAGATCGGCCAAGCTAT 59.243 57.895 2.24 0.00 0.00 2.97
313 314 3.106986 GCCCAGATCGGCCAAGCTA 62.107 63.158 2.24 0.00 43.66 3.32
314 315 4.496336 GCCCAGATCGGCCAAGCT 62.496 66.667 2.24 0.00 43.66 3.74
316 317 4.161295 TCGCCCAGATCGGCCAAG 62.161 66.667 2.24 0.00 46.98 3.61
317 318 4.161295 CTCGCCCAGATCGGCCAA 62.161 66.667 2.24 0.00 46.98 4.52
323 324 4.593864 GACCGGCTCGCCCAGATC 62.594 72.222 0.00 0.00 0.00 2.75
335 336 4.796231 CTCCCAAGCGACGACCGG 62.796 72.222 0.00 0.00 39.04 5.28
336 337 3.685214 CTCTCCCAAGCGACGACCG 62.685 68.421 0.00 0.00 42.21 4.79
337 338 1.874345 TTCTCTCCCAAGCGACGACC 61.874 60.000 0.00 0.00 0.00 4.79
338 339 0.038526 TTTCTCTCCCAAGCGACGAC 60.039 55.000 0.00 0.00 0.00 4.34
339 340 0.243907 CTTTCTCTCCCAAGCGACGA 59.756 55.000 0.00 0.00 0.00 4.20
340 341 0.737715 CCTTTCTCTCCCAAGCGACG 60.738 60.000 0.00 0.00 0.00 5.12
341 342 0.608640 TCCTTTCTCTCCCAAGCGAC 59.391 55.000 0.00 0.00 0.00 5.19
342 343 1.348064 TTCCTTTCTCTCCCAAGCGA 58.652 50.000 0.00 0.00 0.00 4.93
343 344 1.807142 GTTTCCTTTCTCTCCCAAGCG 59.193 52.381 0.00 0.00 0.00 4.68
344 345 2.163509 GGTTTCCTTTCTCTCCCAAGC 58.836 52.381 0.00 0.00 0.00 4.01
345 346 2.427506 CGGTTTCCTTTCTCTCCCAAG 58.572 52.381 0.00 0.00 0.00 3.61
346 347 1.544759 GCGGTTTCCTTTCTCTCCCAA 60.545 52.381 0.00 0.00 0.00 4.12
347 348 0.036306 GCGGTTTCCTTTCTCTCCCA 59.964 55.000 0.00 0.00 0.00 4.37
348 349 0.677098 GGCGGTTTCCTTTCTCTCCC 60.677 60.000 0.00 0.00 0.00 4.30
349 350 1.019805 CGGCGGTTTCCTTTCTCTCC 61.020 60.000 0.00 0.00 0.00 3.71
350 351 1.019805 CCGGCGGTTTCCTTTCTCTC 61.020 60.000 19.97 0.00 0.00 3.20
351 352 1.003718 CCGGCGGTTTCCTTTCTCT 60.004 57.895 19.97 0.00 0.00 3.10
352 353 2.038837 CCCGGCGGTTTCCTTTCTC 61.039 63.158 26.32 0.00 0.00 2.87
353 354 1.848886 ATCCCGGCGGTTTCCTTTCT 61.849 55.000 26.32 0.00 0.00 2.52
354 355 0.963856 AATCCCGGCGGTTTCCTTTC 60.964 55.000 26.32 0.00 0.00 2.62
355 356 0.541063 AAATCCCGGCGGTTTCCTTT 60.541 50.000 26.32 13.02 0.00 3.11
356 357 0.541063 AAAATCCCGGCGGTTTCCTT 60.541 50.000 26.32 8.40 0.00 3.36
357 358 0.541063 AAAAATCCCGGCGGTTTCCT 60.541 50.000 26.32 7.83 0.00 3.36
358 359 1.969085 AAAAATCCCGGCGGTTTCC 59.031 52.632 26.32 0.00 0.00 3.13
382 383 9.481340 GCTGAACTGAAAAGGAAAAGATAAAAT 57.519 29.630 0.00 0.00 0.00 1.82
383 384 7.647715 CGCTGAACTGAAAAGGAAAAGATAAAA 59.352 33.333 0.00 0.00 0.00 1.52
384 385 7.138736 CGCTGAACTGAAAAGGAAAAGATAAA 58.861 34.615 0.00 0.00 0.00 1.40
385 386 6.668323 CGCTGAACTGAAAAGGAAAAGATAA 58.332 36.000 0.00 0.00 0.00 1.75
386 387 5.334879 GCGCTGAACTGAAAAGGAAAAGATA 60.335 40.000 0.00 0.00 0.00 1.98
387 388 4.557496 GCGCTGAACTGAAAAGGAAAAGAT 60.557 41.667 0.00 0.00 0.00 2.40
388 389 3.243068 GCGCTGAACTGAAAAGGAAAAGA 60.243 43.478 0.00 0.00 0.00 2.52
389 390 3.045688 GCGCTGAACTGAAAAGGAAAAG 58.954 45.455 0.00 0.00 0.00 2.27
390 391 2.540769 CGCGCTGAACTGAAAAGGAAAA 60.541 45.455 5.56 0.00 0.00 2.29
391 392 1.002900 CGCGCTGAACTGAAAAGGAAA 60.003 47.619 5.56 0.00 0.00 3.13
392 393 0.586319 CGCGCTGAACTGAAAAGGAA 59.414 50.000 5.56 0.00 0.00 3.36
393 394 1.841663 GCGCGCTGAACTGAAAAGGA 61.842 55.000 26.67 0.00 0.00 3.36
394 395 1.441016 GCGCGCTGAACTGAAAAGG 60.441 57.895 26.67 0.00 0.00 3.11
395 396 1.789739 CGCGCGCTGAACTGAAAAG 60.790 57.895 30.48 4.48 0.00 2.27
396 397 2.248140 CGCGCGCTGAACTGAAAA 59.752 55.556 30.48 0.00 0.00 2.29
397 398 4.368808 GCGCGCGCTGAACTGAAA 62.369 61.111 44.38 0.00 38.26 2.69
428 429 4.773117 GAGTCCGTCCGACGTGGC 62.773 72.222 19.13 12.11 46.92 5.01
429 430 4.112341 GGAGTCCGTCCGACGTGG 62.112 72.222 19.13 5.58 46.92 4.94
436 437 1.385756 GGCTGACTAGGAGTCCGTCC 61.386 65.000 12.96 1.84 44.44 4.79
437 438 0.394625 AGGCTGACTAGGAGTCCGTC 60.395 60.000 2.76 6.89 44.44 4.79
438 439 0.681564 CAGGCTGACTAGGAGTCCGT 60.682 60.000 9.42 0.00 44.44 4.69
439 440 0.681564 ACAGGCTGACTAGGAGTCCG 60.682 60.000 23.66 0.00 44.44 4.79
440 441 2.438800 TACAGGCTGACTAGGAGTCC 57.561 55.000 23.66 0.00 44.44 3.85
441 442 4.496360 GTTTTACAGGCTGACTAGGAGTC 58.504 47.826 23.66 0.00 45.26 3.36
442 443 3.056749 CGTTTTACAGGCTGACTAGGAGT 60.057 47.826 23.66 0.00 0.00 3.85
443 444 3.512680 CGTTTTACAGGCTGACTAGGAG 58.487 50.000 23.66 2.91 0.00 3.69
444 445 2.353406 GCGTTTTACAGGCTGACTAGGA 60.353 50.000 23.66 0.00 33.17 2.94
445 446 2.000447 GCGTTTTACAGGCTGACTAGG 59.000 52.381 23.66 9.77 33.17 3.02
446 447 2.000447 GGCGTTTTACAGGCTGACTAG 59.000 52.381 23.66 8.17 36.45 2.57
447 448 1.338389 GGGCGTTTTACAGGCTGACTA 60.338 52.381 23.66 0.24 36.45 2.59
448 449 0.605589 GGGCGTTTTACAGGCTGACT 60.606 55.000 23.66 1.42 36.45 3.41
449 450 1.873863 GGGCGTTTTACAGGCTGAC 59.126 57.895 23.66 7.81 36.45 3.51
450 451 1.669760 CGGGCGTTTTACAGGCTGA 60.670 57.895 23.66 1.56 41.20 4.26
451 452 0.671163 TACGGGCGTTTTACAGGCTG 60.671 55.000 14.16 14.16 43.84 4.85
452 453 0.035176 TTACGGGCGTTTTACAGGCT 59.965 50.000 0.00 0.00 36.45 4.58
453 454 1.063027 GATTACGGGCGTTTTACAGGC 59.937 52.381 0.00 0.00 35.37 4.85
454 455 2.606272 GAGATTACGGGCGTTTTACAGG 59.394 50.000 0.00 0.00 0.00 4.00
455 456 2.606272 GGAGATTACGGGCGTTTTACAG 59.394 50.000 0.00 0.00 0.00 2.74
456 457 2.234414 AGGAGATTACGGGCGTTTTACA 59.766 45.455 0.00 0.00 0.00 2.41
457 458 2.606272 CAGGAGATTACGGGCGTTTTAC 59.394 50.000 0.00 0.00 0.00 2.01
458 459 2.234414 ACAGGAGATTACGGGCGTTTTA 59.766 45.455 0.00 0.00 0.00 1.52
459 460 1.002773 ACAGGAGATTACGGGCGTTTT 59.997 47.619 0.00 0.00 0.00 2.43
460 461 0.611714 ACAGGAGATTACGGGCGTTT 59.388 50.000 0.00 0.00 0.00 3.60
461 462 1.135721 GTACAGGAGATTACGGGCGTT 59.864 52.381 0.00 0.00 0.00 4.84
462 463 0.743097 GTACAGGAGATTACGGGCGT 59.257 55.000 0.00 0.00 0.00 5.68
463 464 0.317603 CGTACAGGAGATTACGGGCG 60.318 60.000 0.00 0.00 37.92 6.13
464 465 0.743097 ACGTACAGGAGATTACGGGC 59.257 55.000 6.16 0.00 44.30 6.13
465 466 2.486951 CACGTACAGGAGATTACGGG 57.513 55.000 6.16 0.00 44.30 5.28
466 467 3.547613 GCTACACGTACAGGAGATTACGG 60.548 52.174 6.16 0.00 44.30 4.02
467 468 3.064408 TGCTACACGTACAGGAGATTACG 59.936 47.826 0.00 0.00 45.27 3.18
468 469 4.627611 TGCTACACGTACAGGAGATTAC 57.372 45.455 0.00 0.00 0.00 1.89
469 470 5.847111 AATGCTACACGTACAGGAGATTA 57.153 39.130 0.00 0.00 0.00 1.75
470 471 4.737855 AATGCTACACGTACAGGAGATT 57.262 40.909 0.00 0.00 0.00 2.40
471 472 6.216569 CAATAATGCTACACGTACAGGAGAT 58.783 40.000 0.00 0.00 0.00 2.75
472 473 5.588240 CAATAATGCTACACGTACAGGAGA 58.412 41.667 0.00 0.00 0.00 3.71
473 474 5.890110 CAATAATGCTACACGTACAGGAG 57.110 43.478 0.00 0.00 0.00 3.69
488 489 3.770046 TGAGGGGGATGATGCAATAATG 58.230 45.455 0.00 0.00 0.00 1.90
489 490 4.044952 TGATGAGGGGGATGATGCAATAAT 59.955 41.667 0.00 0.00 0.00 1.28
490 491 3.398629 TGATGAGGGGGATGATGCAATAA 59.601 43.478 0.00 0.00 0.00 1.40
491 492 2.988148 TGATGAGGGGGATGATGCAATA 59.012 45.455 0.00 0.00 0.00 1.90
492 493 1.784593 TGATGAGGGGGATGATGCAAT 59.215 47.619 0.00 0.00 0.00 3.56
493 494 1.224436 TGATGAGGGGGATGATGCAA 58.776 50.000 0.00 0.00 0.00 4.08
494 495 1.353358 GATGATGAGGGGGATGATGCA 59.647 52.381 0.00 0.00 0.00 3.96
495 496 1.678123 CGATGATGAGGGGGATGATGC 60.678 57.143 0.00 0.00 0.00 3.91
532 533 3.591835 GCGAGAGGAGAGAGGGCG 61.592 72.222 0.00 0.00 0.00 6.13
591 592 3.511146 AGCTGTGAAGGAGAGAGAGAAAG 59.489 47.826 0.00 0.00 0.00 2.62
592 593 3.505386 AGCTGTGAAGGAGAGAGAGAAA 58.495 45.455 0.00 0.00 0.00 2.52
593 594 3.168035 AGCTGTGAAGGAGAGAGAGAA 57.832 47.619 0.00 0.00 0.00 2.87
594 595 2.897271 AGCTGTGAAGGAGAGAGAGA 57.103 50.000 0.00 0.00 0.00 3.10
595 596 4.206375 TGATAGCTGTGAAGGAGAGAGAG 58.794 47.826 0.00 0.00 0.00 3.20
625 626 1.158007 GGAGGAGAGAGAGAGGGGAT 58.842 60.000 0.00 0.00 0.00 3.85
639 640 7.905144 ATAAATAATAGGGTGGATTGGAGGA 57.095 36.000 0.00 0.00 0.00 3.71
640 641 7.093771 GCAATAAATAATAGGGTGGATTGGAGG 60.094 40.741 0.00 0.00 0.00 4.30
788 793 5.308825 GTCAGGGATGAAGAAGAAGAACAA 58.691 41.667 0.00 0.00 0.00 2.83
789 794 4.263068 GGTCAGGGATGAAGAAGAAGAACA 60.263 45.833 0.00 0.00 0.00 3.18
790 795 4.019771 AGGTCAGGGATGAAGAAGAAGAAC 60.020 45.833 0.00 0.00 0.00 3.01
791 796 4.019860 CAGGTCAGGGATGAAGAAGAAGAA 60.020 45.833 0.00 0.00 0.00 2.52
882 914 0.846427 AAGATGGGAGGCCAGGACAA 60.846 55.000 5.01 0.00 0.00 3.18
939 971 0.627469 ACAGGGGCATAGGGAATGGT 60.627 55.000 0.00 0.00 35.99 3.55
957 989 2.559330 CCGGCAAAGCGTTACCAC 59.441 61.111 2.45 0.00 0.00 4.16
1226 1261 2.881352 GCGCCTCTTCGTCGAAGG 60.881 66.667 29.52 19.49 39.82 3.46
1461 1496 2.996330 AATTTCCGGCCTCCAGGGG 61.996 63.158 0.00 0.00 35.18 4.79
1723 1769 3.797507 CTGGGATTGATGCCCCCGG 62.798 68.421 0.00 0.00 45.40 5.73
1724 1770 2.203394 CTGGGATTGATGCCCCCG 60.203 66.667 0.00 0.00 45.40 5.73
1725 1771 1.152368 CTCTGGGATTGATGCCCCC 59.848 63.158 0.00 0.00 45.40 5.40
1726 1772 0.552848 TTCTCTGGGATTGATGCCCC 59.447 55.000 0.00 0.00 45.40 5.80
1788 1836 7.945134 AGATTAAATCGGGAATCAAAATCCAG 58.055 34.615 0.00 0.00 38.80 3.86
1986 2035 1.063912 CAACCACAATCGCGCACATAT 59.936 47.619 8.75 0.00 0.00 1.78
1988 2037 1.209898 CAACCACAATCGCGCACAT 59.790 52.632 8.75 0.00 0.00 3.21
1991 2040 1.906994 GCTACAACCACAATCGCGCA 61.907 55.000 8.75 0.00 0.00 6.09
1992 2041 1.226018 GCTACAACCACAATCGCGC 60.226 57.895 0.00 0.00 0.00 6.86
1993 2042 1.058748 CGCTACAACCACAATCGCG 59.941 57.895 0.00 0.00 0.00 5.87
1994 2043 1.323534 CTACGCTACAACCACAATCGC 59.676 52.381 0.00 0.00 0.00 4.58
1995 2044 2.852413 CTCTACGCTACAACCACAATCG 59.148 50.000 0.00 0.00 0.00 3.34
1996 2045 2.603560 GCTCTACGCTACAACCACAATC 59.396 50.000 0.00 0.00 35.14 2.67
2121 2170 4.038763 TCGAACTTCTCCTTGCACTTCTTA 59.961 41.667 0.00 0.00 0.00 2.10
2223 2272 2.786539 TTTGCATCGCCTCGAGCTGT 62.787 55.000 6.99 0.00 39.91 4.40
2277 2449 3.616721 ACTCCAACGGCTGTCGCT 61.617 61.111 0.00 0.00 43.89 4.93
2394 2569 0.538287 AGAAGCTCAAGTTGCCCACC 60.538 55.000 0.00 0.00 0.00 4.61
2458 2636 4.353437 GTCGTCGGTGCCCTCGTT 62.353 66.667 0.00 0.00 0.00 3.85
2835 3037 2.309613 GGCATGAATGTAATGGCCTGA 58.690 47.619 3.32 0.00 42.98 3.86
3074 3300 3.126858 GTCCATGCAGCTTGAATTTACGA 59.873 43.478 9.87 0.00 0.00 3.43
3258 3598 2.245438 CTTCCCAGAGCGGTCCCTTC 62.245 65.000 11.73 0.00 0.00 3.46
3531 3871 4.521062 GCCTCGATGCGCTCCTGT 62.521 66.667 9.73 0.00 0.00 4.00
3633 3973 3.569690 CCGCCGCCATTACCGTTC 61.570 66.667 0.00 0.00 0.00 3.95
4036 4376 1.152943 TCCTCGTCCTCATCCTCGG 60.153 63.158 0.00 0.00 0.00 4.63
4067 4407 1.095600 TGTACTGCGTTTTGTTGCCA 58.904 45.000 0.00 0.00 0.00 4.92
4100 4440 0.111061 TCTGATGTTGTTGCTGCCCT 59.889 50.000 0.00 0.00 0.00 5.19
4437 4777 1.621672 GCTTGGTGGAGGAGGAGAGG 61.622 65.000 0.00 0.00 0.00 3.69
4578 4943 3.695830 AGCTTGTATCTTGAACGGGAA 57.304 42.857 0.00 0.00 0.00 3.97
4681 5046 5.902613 ATTGATCACCACGACAAATCAAT 57.097 34.783 0.00 3.67 40.46 2.57
4682 5047 6.652900 TCTTATTGATCACCACGACAAATCAA 59.347 34.615 0.00 0.00 39.78 2.57
4708 5073 4.803908 CCCTCCGGCAAGAAGGGC 62.804 72.222 12.02 0.00 32.55 5.19
4767 5134 4.492611 GATCGATCTTATTACCGGGGTTC 58.507 47.826 18.29 0.00 0.00 3.62
4798 5165 4.059511 TCTTGTCTTCATTTTAACCGCGA 58.940 39.130 8.23 0.00 0.00 5.87
4816 5183 4.732285 AAGTAACAATCACACGCTCTTG 57.268 40.909 0.00 0.00 0.00 3.02
4828 5195 7.215789 TGCACCAAATTGATGAAAGTAACAAT 58.784 30.769 0.00 0.00 34.99 2.71
4840 5207 2.378038 AGCCGTATGCACCAAATTGAT 58.622 42.857 0.00 0.00 44.83 2.57
4887 5254 3.451894 CCCCGTTCCATTGCAGCC 61.452 66.667 0.00 0.00 0.00 4.85
4903 5270 4.857037 CCGTCGATCCTTTTTCATTTTTCC 59.143 41.667 0.00 0.00 0.00 3.13
4937 5304 2.239654 CACCTTTCTTCCTCATGGCCTA 59.760 50.000 3.32 0.00 0.00 3.93
5043 5411 7.067129 ACAGTTGGTAAGAAGAAGAAAAACTCC 59.933 37.037 0.00 0.00 0.00 3.85
5137 5505 9.364989 GAGTTCATATATACTCAGAAGAATGCC 57.635 37.037 9.78 0.00 40.35 4.40
5175 5543 7.524717 AAAATACAGAAAACACAGTAGGCAT 57.475 32.000 0.00 0.00 0.00 4.40
5176 5544 6.952773 AAAATACAGAAAACACAGTAGGCA 57.047 33.333 0.00 0.00 0.00 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.