Multiple sequence alignment - TraesCS1B01G203200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G203200 chr1B 100.000 3156 0 0 1 3156 364920637 364917482 0.000000e+00 5829.0
1 TraesCS1B01G203200 chr1B 92.879 323 22 1 2642 2964 24356500 24356179 4.770000e-128 468.0
2 TraesCS1B01G203200 chr1D 90.331 2534 129 56 21 2496 249559118 249561593 0.000000e+00 3216.0
3 TraesCS1B01G203200 chr1D 88.835 206 3 8 2964 3156 249561804 249562002 5.260000e-58 235.0
4 TraesCS1B01G203200 chr1D 88.028 142 9 5 2501 2642 249561673 249561806 9.060000e-36 161.0
5 TraesCS1B01G203200 chr1A 92.314 1236 50 20 1401 2608 319320460 319321678 0.000000e+00 1714.0
6 TraesCS1B01G203200 chr1A 91.069 1254 53 22 168 1372 319319215 319320458 0.000000e+00 1640.0
7 TraesCS1B01G203200 chr1A 92.879 323 22 1 2642 2964 545755159 545755480 4.770000e-128 468.0
8 TraesCS1B01G203200 chr1A 86.813 182 4 5 2979 3154 319321690 319321857 5.380000e-43 185.0
9 TraesCS1B01G203200 chr4B 93.578 327 20 1 2640 2966 37726350 37726675 1.320000e-133 486.0
10 TraesCS1B01G203200 chr4B 78.723 564 87 22 1555 2097 670850350 670849799 2.330000e-91 346.0
11 TraesCS1B01G203200 chr4B 85.246 244 22 6 1122 1352 670850698 670850456 4.070000e-59 239.0
12 TraesCS1B01G203200 chr5A 93.293 328 21 1 2639 2966 374885836 374886162 1.700000e-132 483.0
13 TraesCS1B01G203200 chr5A 92.355 327 24 1 2640 2966 228892252 228892577 6.170000e-127 464.0
14 TraesCS1B01G203200 chr5A 78.114 562 90 22 1557 2097 708723262 708722713 3.040000e-85 326.0
15 TraesCS1B01G203200 chr5A 85.656 244 21 5 1122 1352 708723609 708723367 8.740000e-61 244.0
16 TraesCS1B01G203200 chr5A 85.470 117 12 5 1181 1293 645412954 645412839 1.990000e-22 117.0
17 TraesCS1B01G203200 chr2A 92.447 331 24 1 2636 2966 15461435 15461106 3.680000e-129 472.0
18 TraesCS1B01G203200 chr2A 91.837 49 4 0 1825 1873 570608626 570608674 5.650000e-08 69.4
19 TraesCS1B01G203200 chr7B 92.378 328 24 1 2640 2967 658058933 658058607 1.710000e-127 466.0
20 TraesCS1B01G203200 chr7B 92.570 323 22 2 2642 2964 435675954 435675634 2.220000e-126 462.0
21 TraesCS1B01G203200 chr3B 92.593 324 22 2 2642 2964 333447602 333447924 6.170000e-127 464.0
22 TraesCS1B01G203200 chrUn 78.276 557 96 18 1555 2097 28674849 28675394 5.040000e-88 335.0
23 TraesCS1B01G203200 chrUn 85.246 244 22 8 1122 1352 28674504 28674746 4.070000e-59 239.0
24 TraesCS1B01G203200 chr6A 81.279 219 38 3 1132 1347 450108236 450108018 1.160000e-39 174.0
25 TraesCS1B01G203200 chr6D 80.822 219 39 3 1132 1347 313188161 313187943 5.410000e-38 169.0
26 TraesCS1B01G203200 chr6B 80.365 219 40 3 1132 1347 513135661 513135879 2.520000e-36 163.0
27 TraesCS1B01G203200 chr2D 92.308 52 4 0 1825 1876 419364816 419364765 1.210000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G203200 chr1B 364917482 364920637 3155 True 5829.000000 5829 100.000000 1 3156 1 chr1B.!!$R2 3155
1 TraesCS1B01G203200 chr1D 249559118 249562002 2884 False 1204.000000 3216 89.064667 21 3156 3 chr1D.!!$F1 3135
2 TraesCS1B01G203200 chr1A 319319215 319321857 2642 False 1179.666667 1714 90.065333 168 3154 3 chr1A.!!$F2 2986
3 TraesCS1B01G203200 chr4B 670849799 670850698 899 True 292.500000 346 81.984500 1122 2097 2 chr4B.!!$R1 975
4 TraesCS1B01G203200 chr5A 708722713 708723609 896 True 285.000000 326 81.885000 1122 2097 2 chr5A.!!$R2 975
5 TraesCS1B01G203200 chrUn 28674504 28675394 890 False 287.000000 335 81.761000 1122 2097 2 chrUn.!!$F1 975

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
907 963 0.322906 GAGGAAGCCAGAACCCCAAG 60.323 60.0 0.0 0.0 0.0 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2865 3104 0.034186 CTCCCCAATGCAAGCTACCA 60.034 55.0 0.0 0.0 0.0 3.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 1.285962 CCCTCCCAATTCATGTCACCT 59.714 52.381 0.00 0.00 0.00 4.00
32 33 4.567537 CCTCCCAATTCATGTCACCTAACA 60.568 45.833 0.00 0.00 0.00 2.41
34 35 5.389520 TCCCAATTCATGTCACCTAACAAA 58.610 37.500 0.00 0.00 31.81 2.83
37 38 6.239289 CCCAATTCATGTCACCTAACAAAACT 60.239 38.462 0.00 0.00 31.81 2.66
38 39 6.642131 CCAATTCATGTCACCTAACAAAACTG 59.358 38.462 0.00 0.00 31.81 3.16
40 41 4.787551 TCATGTCACCTAACAAAACTGGT 58.212 39.130 0.00 0.00 31.81 4.00
42 43 4.974368 TGTCACCTAACAAAACTGGTTG 57.026 40.909 0.00 0.00 34.52 3.77
43 44 3.129638 TGTCACCTAACAAAACTGGTTGC 59.870 43.478 0.00 0.00 31.29 4.17
44 45 3.129638 GTCACCTAACAAAACTGGTTGCA 59.870 43.478 0.00 0.00 31.29 4.08
46 47 3.380004 CACCTAACAAAACTGGTTGCAGA 59.620 43.478 0.00 0.00 31.29 4.26
50 51 5.519927 CCTAACAAAACTGGTTGCAGAAAAG 59.480 40.000 0.00 0.00 31.29 2.27
51 52 3.860641 ACAAAACTGGTTGCAGAAAAGG 58.139 40.909 0.00 0.00 31.29 3.11
56 57 1.821136 CTGGTTGCAGAAAAGGGGATC 59.179 52.381 0.00 0.00 0.00 3.36
65 68 5.187576 TGCAGAAAAGGGGATCCTAATTTTG 59.812 40.000 19.81 13.06 44.07 2.44
78 81 8.864087 GGATCCTAATTTTGAGATTAAGGCAAT 58.136 33.333 3.84 0.00 0.00 3.56
140 143 8.014070 TCAACCACTATATTCGAGGTGATAAA 57.986 34.615 0.00 0.00 31.86 1.40
141 144 8.141909 TCAACCACTATATTCGAGGTGATAAAG 58.858 37.037 0.00 0.00 31.86 1.85
143 146 6.267928 ACCACTATATTCGAGGTGATAAAGCT 59.732 38.462 0.00 0.00 40.07 3.74
144 147 6.587990 CCACTATATTCGAGGTGATAAAGCTG 59.412 42.308 0.00 0.00 36.52 4.24
152 155 0.375106 GTGATAAAGCTGCACCGAGC 59.625 55.000 1.02 0.00 45.96 5.03
161 164 3.737172 GCACCGAGCAAATGCCGT 61.737 61.111 0.94 0.00 44.79 5.68
162 165 2.480555 CACCGAGCAAATGCCGTC 59.519 61.111 0.94 0.00 43.38 4.79
163 166 2.034879 CACCGAGCAAATGCCGTCT 61.035 57.895 0.94 0.00 43.38 4.18
164 167 1.741770 ACCGAGCAAATGCCGTCTC 60.742 57.895 0.94 0.00 43.38 3.36
166 169 1.699656 CCGAGCAAATGCCGTCTCTG 61.700 60.000 0.94 0.00 43.38 3.35
174 178 1.825341 TGCCGTCTCTGCATAGCAT 59.175 52.632 0.00 0.00 38.13 3.79
217 223 6.734104 TCCAACACAACCAAAAAGAAAATG 57.266 33.333 0.00 0.00 0.00 2.32
242 248 8.657729 TGTCATTTTACTGCGATAATACGAAAA 58.342 29.630 0.00 0.00 35.09 2.29
279 288 4.760715 CCTATTTGATCTTGATCAGGGCTG 59.239 45.833 12.31 5.15 31.46 4.85
306 315 3.509575 ACCACAAATGTAAATGGCACGAT 59.490 39.130 0.00 0.00 35.49 3.73
325 334 4.220821 ACGATGAAGCCTTTTCTAGAGACA 59.779 41.667 0.00 0.00 0.00 3.41
349 358 5.208890 AGCATCATCAGGTGTACCTTACTA 58.791 41.667 0.00 0.00 46.09 1.82
488 500 3.427503 CGCCAATAATCCGTTTTCAAGCT 60.428 43.478 0.00 0.00 0.00 3.74
547 559 2.226330 TGATCCAATTATTTCGCCCCG 58.774 47.619 0.00 0.00 0.00 5.73
624 649 2.450476 GGTGAGCCCATGACAGATTTT 58.550 47.619 0.00 0.00 0.00 1.82
630 667 3.758554 AGCCCATGACAGATTTTGTGTAC 59.241 43.478 0.00 0.00 41.05 2.90
744 789 2.438021 TGGTTCTGGTTCTACACTTGCT 59.562 45.455 0.00 0.00 0.00 3.91
758 803 2.127708 ACTTGCTATTCCTACCCCTGG 58.872 52.381 0.00 0.00 0.00 4.45
844 894 3.451178 CGCACCCACCTATATATAAGCCT 59.549 47.826 0.00 0.00 0.00 4.58
851 901 7.186779 ACCCACCTATATATAAGCCTCTCTACT 59.813 40.741 0.00 0.00 0.00 2.57
907 963 0.322906 GAGGAAGCCAGAACCCCAAG 60.323 60.000 0.00 0.00 0.00 3.61
912 968 3.966543 CCAGAACCCCAAGGCCGT 61.967 66.667 0.00 0.00 36.11 5.68
913 969 2.359975 CAGAACCCCAAGGCCGTC 60.360 66.667 0.00 0.00 36.11 4.79
914 970 3.647771 AGAACCCCAAGGCCGTCC 61.648 66.667 0.00 0.00 36.11 4.79
915 971 3.961414 GAACCCCAAGGCCGTCCA 61.961 66.667 0.00 0.00 36.11 4.02
916 972 3.501040 GAACCCCAAGGCCGTCCAA 62.501 63.158 0.00 0.00 36.11 3.53
917 973 3.507377 AACCCCAAGGCCGTCCAAG 62.507 63.158 0.00 0.00 36.11 3.61
918 974 3.966543 CCCCAAGGCCGTCCAAGT 61.967 66.667 0.00 0.00 33.74 3.16
919 975 2.359975 CCCAAGGCCGTCCAAGTC 60.360 66.667 0.00 0.00 33.74 3.01
920 976 2.750350 CCAAGGCCGTCCAAGTCT 59.250 61.111 0.00 0.00 33.74 3.24
921 977 1.073199 CCAAGGCCGTCCAAGTCTT 59.927 57.895 0.00 0.00 33.74 3.01
939 995 2.895426 TTCCTCCCTCTCTCGGCTCG 62.895 65.000 0.00 0.00 0.00 5.03
944 1000 2.515991 CTCTCTCGGCTCGGCTCT 60.516 66.667 0.00 0.00 0.00 4.09
945 1001 2.826287 TCTCTCGGCTCGGCTCTG 60.826 66.667 0.00 0.00 0.00 3.35
952 1008 2.202864 GCTCGGCTCTGCTCTTCC 60.203 66.667 0.00 0.00 0.00 3.46
961 1017 1.153939 CTGCTCTTCCCGTCTCGTG 60.154 63.158 0.00 0.00 0.00 4.35
1068 1129 1.009900 CGACGGCGACATAGAGGTC 60.010 63.158 16.62 0.00 40.82 3.85
1372 1445 0.321298 AGGTGCGTGCTTTATTCCGT 60.321 50.000 0.00 0.00 0.00 4.69
1373 1446 0.096454 GGTGCGTGCTTTATTCCGTC 59.904 55.000 0.00 0.00 0.00 4.79
1374 1447 0.247145 GTGCGTGCTTTATTCCGTCG 60.247 55.000 0.00 0.00 0.00 5.12
1375 1448 1.296649 GCGTGCTTTATTCCGTCGC 60.297 57.895 0.00 0.00 35.86 5.19
1376 1449 1.347221 CGTGCTTTATTCCGTCGCC 59.653 57.895 0.00 0.00 0.00 5.54
1377 1450 1.719709 GTGCTTTATTCCGTCGCCC 59.280 57.895 0.00 0.00 0.00 6.13
1378 1451 1.812093 TGCTTTATTCCGTCGCCCG 60.812 57.895 0.00 0.00 0.00 6.13
1379 1452 3.011583 CTTTATTCCGTCGCCCGC 58.988 61.111 0.00 0.00 34.38 6.13
1380 1453 2.867091 CTTTATTCCGTCGCCCGCG 61.867 63.158 0.00 0.00 41.35 6.46
1423 1496 4.299547 TCTGCTCTGTGCCGCGTT 62.300 61.111 4.92 0.00 42.00 4.84
1424 1497 3.349006 CTGCTCTGTGCCGCGTTT 61.349 61.111 4.92 0.00 42.00 3.60
1588 1689 3.687102 CGGGTGTCGGTGGCACTA 61.687 66.667 18.45 3.17 37.07 2.74
1879 1986 2.134287 GGAGCTCCTGACCGGCATA 61.134 63.158 26.25 0.00 0.00 3.14
2116 2241 4.554036 GCGCAGGGGTCCATCCTC 62.554 72.222 0.30 0.00 36.82 3.71
2210 2343 2.681976 GCCAGCTGTAACCTGTGATGAT 60.682 50.000 13.81 0.00 0.00 2.45
2211 2344 2.941064 CCAGCTGTAACCTGTGATGATG 59.059 50.000 13.81 0.00 0.00 3.07
2213 2346 2.573462 AGCTGTAACCTGTGATGATGGT 59.427 45.455 0.00 0.00 35.29 3.55
2214 2347 2.679837 GCTGTAACCTGTGATGATGGTG 59.320 50.000 0.00 0.00 33.89 4.17
2215 2348 3.869912 GCTGTAACCTGTGATGATGGTGT 60.870 47.826 0.00 0.00 33.89 4.16
2216 2349 3.673902 TGTAACCTGTGATGATGGTGTG 58.326 45.455 0.00 0.00 33.89 3.82
2217 2350 3.326297 TGTAACCTGTGATGATGGTGTGA 59.674 43.478 0.00 0.00 33.89 3.58
2218 2351 2.775911 ACCTGTGATGATGGTGTGAG 57.224 50.000 0.00 0.00 32.16 3.51
2295 2439 3.446184 GAGCATATCGAAAAGCCATCG 57.554 47.619 0.00 0.00 41.53 3.84
2379 2538 5.530915 TGATGGGGAATTTCGATGACATTAC 59.469 40.000 0.00 0.00 0.00 1.89
2408 2568 0.106268 TGGCAGTGATTTGGGTGTGT 60.106 50.000 0.00 0.00 0.00 3.72
2410 2570 1.032014 GCAGTGATTTGGGTGTGTGT 58.968 50.000 0.00 0.00 0.00 3.72
2416 2576 2.437651 TGATTTGGGTGTGTGTGAGAGA 59.562 45.455 0.00 0.00 0.00 3.10
2496 2656 5.522097 GGTGATTGTTTGGTTGGTTTGTAAG 59.478 40.000 0.00 0.00 0.00 2.34
2557 2796 2.729467 CGTTTTGTTTGTGGTTCGAGCA 60.729 45.455 0.53 0.00 0.00 4.26
2558 2797 3.246619 GTTTTGTTTGTGGTTCGAGCAA 58.753 40.909 0.53 0.00 0.00 3.91
2559 2798 2.842208 TTGTTTGTGGTTCGAGCAAG 57.158 45.000 0.53 0.00 0.00 4.01
2560 2799 1.745232 TGTTTGTGGTTCGAGCAAGT 58.255 45.000 0.53 0.00 0.00 3.16
2561 2800 1.668751 TGTTTGTGGTTCGAGCAAGTC 59.331 47.619 0.53 0.00 0.00 3.01
2562 2801 1.668751 GTTTGTGGTTCGAGCAAGTCA 59.331 47.619 0.53 0.00 0.00 3.41
2563 2802 1.295792 TTGTGGTTCGAGCAAGTCAC 58.704 50.000 0.53 0.57 0.00 3.67
2564 2803 0.531974 TGTGGTTCGAGCAAGTCACC 60.532 55.000 0.53 0.00 0.00 4.02
2565 2804 1.300620 TGGTTCGAGCAAGTCACCG 60.301 57.895 0.53 0.00 0.00 4.94
2566 2805 2.027625 GGTTCGAGCAAGTCACCGG 61.028 63.158 0.00 0.00 0.00 5.28
2567 2806 2.027625 GTTCGAGCAAGTCACCGGG 61.028 63.158 6.32 0.00 0.00 5.73
2568 2807 3.876589 TTCGAGCAAGTCACCGGGC 62.877 63.158 6.32 0.00 0.00 6.13
2575 2814 0.391263 CAAGTCACCGGGCTTCTACC 60.391 60.000 6.32 0.00 0.00 3.18
2610 2849 4.649674 TGACAGCCTTTCTCTCCGTAATAT 59.350 41.667 0.00 0.00 0.00 1.28
2618 2857 7.441458 GCCTTTCTCTCCGTAATATACAATTGT 59.559 37.037 16.68 16.68 0.00 2.71
2639 2878 0.098728 GTGCTGCCGTGCGAATTTAT 59.901 50.000 0.00 0.00 35.36 1.40
2640 2879 0.808125 TGCTGCCGTGCGAATTTATT 59.192 45.000 0.00 0.00 35.36 1.40
2641 2880 2.010497 TGCTGCCGTGCGAATTTATTA 58.990 42.857 0.00 0.00 35.36 0.98
2642 2881 2.031560 TGCTGCCGTGCGAATTTATTAG 59.968 45.455 0.00 0.00 35.36 1.73
2643 2882 2.602217 GCTGCCGTGCGAATTTATTAGG 60.602 50.000 0.00 0.00 0.00 2.69
2644 2883 1.944024 TGCCGTGCGAATTTATTAGGG 59.056 47.619 0.00 0.00 0.00 3.53
2645 2884 1.334689 GCCGTGCGAATTTATTAGGGC 60.335 52.381 0.00 0.00 0.00 5.19
2646 2885 1.944024 CCGTGCGAATTTATTAGGGCA 59.056 47.619 0.00 0.00 0.00 5.36
2647 2886 2.552315 CCGTGCGAATTTATTAGGGCAT 59.448 45.455 0.00 0.00 32.53 4.40
2648 2887 3.554524 CGTGCGAATTTATTAGGGCATG 58.445 45.455 0.00 0.00 32.53 4.06
2649 2888 3.003275 CGTGCGAATTTATTAGGGCATGT 59.997 43.478 0.00 0.00 33.85 3.21
2650 2889 4.212425 CGTGCGAATTTATTAGGGCATGTA 59.788 41.667 0.00 0.00 33.85 2.29
2651 2890 5.449304 GTGCGAATTTATTAGGGCATGTAC 58.551 41.667 0.00 0.00 32.53 2.90
2652 2891 5.008217 GTGCGAATTTATTAGGGCATGTACA 59.992 40.000 0.00 0.00 32.53 2.90
2653 2892 5.590663 TGCGAATTTATTAGGGCATGTACAA 59.409 36.000 0.00 0.00 0.00 2.41
2654 2893 6.264292 TGCGAATTTATTAGGGCATGTACAAT 59.736 34.615 0.00 0.00 0.00 2.71
2655 2894 6.582295 GCGAATTTATTAGGGCATGTACAATG 59.418 38.462 0.00 0.12 0.00 2.82
2656 2895 6.582295 CGAATTTATTAGGGCATGTACAATGC 59.418 38.462 17.01 17.01 43.85 3.56
2657 2896 6.975196 ATTTATTAGGGCATGTACAATGCA 57.025 33.333 22.92 0.00 46.21 3.96
2658 2897 6.975196 TTTATTAGGGCATGTACAATGCAT 57.025 33.333 22.92 16.26 46.21 3.96
2659 2898 8.648698 ATTTATTAGGGCATGTACAATGCATA 57.351 30.769 22.92 15.58 46.21 3.14
2660 2899 7.686438 TTATTAGGGCATGTACAATGCATAG 57.314 36.000 22.92 2.93 46.21 2.23
2661 2900 2.233271 AGGGCATGTACAATGCATAGC 58.767 47.619 22.92 11.42 46.21 2.97
2662 2901 1.270550 GGGCATGTACAATGCATAGCC 59.729 52.381 22.92 16.30 46.21 3.93
2663 2902 2.233271 GGCATGTACAATGCATAGCCT 58.767 47.619 22.92 0.00 46.21 4.58
2664 2903 2.624838 GGCATGTACAATGCATAGCCTT 59.375 45.455 22.92 0.00 46.21 4.35
2665 2904 3.820467 GGCATGTACAATGCATAGCCTTA 59.180 43.478 22.92 0.00 46.21 2.69
2666 2905 4.278170 GGCATGTACAATGCATAGCCTTAA 59.722 41.667 22.92 0.00 46.21 1.85
2667 2906 5.215160 GCATGTACAATGCATAGCCTTAAC 58.785 41.667 19.12 0.00 44.00 2.01
2668 2907 5.443261 CATGTACAATGCATAGCCTTAACG 58.557 41.667 0.00 0.00 0.00 3.18
2669 2908 4.509616 TGTACAATGCATAGCCTTAACGT 58.490 39.130 0.00 0.00 0.00 3.99
2670 2909 4.331443 TGTACAATGCATAGCCTTAACGTG 59.669 41.667 0.00 0.00 0.00 4.49
2671 2910 3.605634 ACAATGCATAGCCTTAACGTGA 58.394 40.909 0.00 0.00 0.00 4.35
2672 2911 4.199310 ACAATGCATAGCCTTAACGTGAT 58.801 39.130 0.00 0.00 0.00 3.06
2673 2912 4.035558 ACAATGCATAGCCTTAACGTGATG 59.964 41.667 0.00 0.00 0.00 3.07
2674 2913 3.260475 TGCATAGCCTTAACGTGATGT 57.740 42.857 0.00 0.00 0.00 3.06
2675 2914 3.194861 TGCATAGCCTTAACGTGATGTC 58.805 45.455 0.00 0.00 0.00 3.06
2676 2915 3.118775 TGCATAGCCTTAACGTGATGTCT 60.119 43.478 0.00 0.00 0.00 3.41
2677 2916 3.491267 GCATAGCCTTAACGTGATGTCTC 59.509 47.826 0.00 0.00 0.00 3.36
2678 2917 2.279582 AGCCTTAACGTGATGTCTCG 57.720 50.000 0.00 3.25 38.62 4.04
2679 2918 0.645868 GCCTTAACGTGATGTCTCGC 59.354 55.000 4.58 0.00 36.44 5.03
2680 2919 1.990799 CCTTAACGTGATGTCTCGCA 58.009 50.000 4.58 0.00 36.44 5.10
2681 2920 2.540515 CCTTAACGTGATGTCTCGCAT 58.459 47.619 4.58 0.00 41.24 4.73
2682 2921 2.282555 CCTTAACGTGATGTCTCGCATG 59.717 50.000 4.58 0.00 38.06 4.06
2683 2922 1.277326 TAACGTGATGTCTCGCATGC 58.723 50.000 7.91 7.91 38.06 4.06
2684 2923 1.361668 AACGTGATGTCTCGCATGCC 61.362 55.000 13.15 0.00 38.06 4.40
2685 2924 1.810853 CGTGATGTCTCGCATGCCA 60.811 57.895 13.15 4.25 38.06 4.92
2686 2925 1.156034 CGTGATGTCTCGCATGCCAT 61.156 55.000 13.15 9.58 38.06 4.40
2687 2926 0.306840 GTGATGTCTCGCATGCCATG 59.693 55.000 13.15 0.00 38.06 3.66
2688 2927 0.107557 TGATGTCTCGCATGCCATGT 60.108 50.000 13.15 0.00 38.06 3.21
2689 2928 1.138661 TGATGTCTCGCATGCCATGTA 59.861 47.619 13.15 0.00 38.06 2.29
2690 2929 1.797046 GATGTCTCGCATGCCATGTAG 59.203 52.381 13.15 4.83 38.06 2.74
2691 2930 0.179076 TGTCTCGCATGCCATGTAGG 60.179 55.000 13.15 0.00 41.84 3.18
2692 2931 0.104855 GTCTCGCATGCCATGTAGGA 59.895 55.000 13.15 0.14 41.22 2.94
2693 2932 1.051008 TCTCGCATGCCATGTAGGAT 58.949 50.000 13.15 0.00 41.22 3.24
2694 2933 1.001293 TCTCGCATGCCATGTAGGATC 59.999 52.381 13.15 0.00 41.22 3.36
2695 2934 0.319813 TCGCATGCCATGTAGGATCG 60.320 55.000 13.15 0.23 41.22 3.69
2696 2935 1.293963 CGCATGCCATGTAGGATCGG 61.294 60.000 13.15 0.00 41.22 4.18
2697 2936 0.035317 GCATGCCATGTAGGATCGGA 59.965 55.000 6.36 0.00 41.22 4.55
2698 2937 1.339438 GCATGCCATGTAGGATCGGAT 60.339 52.381 6.36 0.00 41.22 4.18
2699 2938 2.093500 GCATGCCATGTAGGATCGGATA 60.093 50.000 6.36 0.00 41.22 2.59
2700 2939 3.432749 GCATGCCATGTAGGATCGGATAT 60.433 47.826 6.36 0.00 41.22 1.63
2701 2940 3.893326 TGCCATGTAGGATCGGATATG 57.107 47.619 0.00 0.00 41.22 1.78
2702 2941 3.440127 TGCCATGTAGGATCGGATATGA 58.560 45.455 0.00 0.00 41.22 2.15
2703 2942 3.195610 TGCCATGTAGGATCGGATATGAC 59.804 47.826 0.00 0.00 41.22 3.06
2704 2943 3.735208 GCCATGTAGGATCGGATATGACG 60.735 52.174 0.00 0.00 41.22 4.35
2705 2944 3.444034 CCATGTAGGATCGGATATGACGT 59.556 47.826 0.00 0.00 41.22 4.34
2706 2945 4.638865 CCATGTAGGATCGGATATGACGTA 59.361 45.833 0.00 0.00 41.22 3.57
2707 2946 5.124936 CCATGTAGGATCGGATATGACGTAA 59.875 44.000 0.00 0.00 41.22 3.18
2708 2947 6.349860 CCATGTAGGATCGGATATGACGTAAA 60.350 42.308 0.00 0.00 41.22 2.01
2709 2948 6.250344 TGTAGGATCGGATATGACGTAAAG 57.750 41.667 0.00 0.00 0.00 1.85
2710 2949 5.766670 TGTAGGATCGGATATGACGTAAAGT 59.233 40.000 0.00 0.00 0.00 2.66
2711 2950 6.936335 TGTAGGATCGGATATGACGTAAAGTA 59.064 38.462 0.00 0.00 0.00 2.24
2712 2951 6.497785 AGGATCGGATATGACGTAAAGTAG 57.502 41.667 0.00 0.00 0.00 2.57
2713 2952 5.415077 AGGATCGGATATGACGTAAAGTAGG 59.585 44.000 0.00 0.00 0.00 3.18
2714 2953 5.182760 GGATCGGATATGACGTAAAGTAGGT 59.817 44.000 0.00 0.00 0.00 3.08
2715 2954 6.294397 GGATCGGATATGACGTAAAGTAGGTT 60.294 42.308 0.00 0.00 0.00 3.50
2716 2955 6.064846 TCGGATATGACGTAAAGTAGGTTC 57.935 41.667 0.00 0.00 0.00 3.62
2717 2956 4.908156 CGGATATGACGTAAAGTAGGTTCG 59.092 45.833 0.00 0.00 0.00 3.95
2718 2957 5.218139 GGATATGACGTAAAGTAGGTTCGG 58.782 45.833 0.00 0.00 0.00 4.30
2719 2958 5.009010 GGATATGACGTAAAGTAGGTTCGGA 59.991 44.000 0.00 0.00 0.00 4.55
2720 2959 4.996788 ATGACGTAAAGTAGGTTCGGAT 57.003 40.909 0.00 0.00 0.00 4.18
2721 2960 7.094634 GGATATGACGTAAAGTAGGTTCGGATA 60.095 40.741 0.00 0.00 0.00 2.59
2722 2961 5.490139 TGACGTAAAGTAGGTTCGGATAG 57.510 43.478 0.00 0.00 0.00 2.08
2723 2962 4.336433 TGACGTAAAGTAGGTTCGGATAGG 59.664 45.833 0.00 0.00 0.00 2.57
2724 2963 3.633986 ACGTAAAGTAGGTTCGGATAGGG 59.366 47.826 0.00 0.00 0.00 3.53
2725 2964 3.885297 CGTAAAGTAGGTTCGGATAGGGA 59.115 47.826 0.00 0.00 0.00 4.20
2726 2965 4.339247 CGTAAAGTAGGTTCGGATAGGGAA 59.661 45.833 0.00 0.00 0.00 3.97
2727 2966 5.506982 CGTAAAGTAGGTTCGGATAGGGAAG 60.507 48.000 0.00 0.00 0.00 3.46
2728 2967 2.317973 AGTAGGTTCGGATAGGGAAGC 58.682 52.381 0.00 0.00 41.06 3.86
2729 2968 1.000496 GTAGGTTCGGATAGGGAAGCG 60.000 57.143 0.00 0.00 44.35 4.68
2730 2969 1.069258 GGTTCGGATAGGGAAGCGG 59.931 63.158 0.00 0.00 32.96 5.52
2731 2970 1.069258 GTTCGGATAGGGAAGCGGG 59.931 63.158 0.00 0.00 0.00 6.13
2732 2971 1.075822 TTCGGATAGGGAAGCGGGA 60.076 57.895 0.00 0.00 0.00 5.14
2733 2972 0.471211 TTCGGATAGGGAAGCGGGAT 60.471 55.000 0.00 0.00 0.00 3.85
2734 2973 0.898789 TCGGATAGGGAAGCGGGATC 60.899 60.000 0.00 0.00 0.00 3.36
2735 2974 1.889530 CGGATAGGGAAGCGGGATCC 61.890 65.000 1.92 1.92 36.16 3.36
2736 2975 0.545548 GGATAGGGAAGCGGGATCCT 60.546 60.000 12.58 0.00 37.14 3.24
2737 2976 1.353091 GATAGGGAAGCGGGATCCTT 58.647 55.000 12.58 0.00 37.14 3.36
2738 2977 1.700186 GATAGGGAAGCGGGATCCTTT 59.300 52.381 12.58 4.04 37.14 3.11
2739 2978 1.591768 TAGGGAAGCGGGATCCTTTT 58.408 50.000 12.58 3.66 37.14 2.27
2740 2979 0.256177 AGGGAAGCGGGATCCTTTTC 59.744 55.000 12.58 12.36 37.14 2.29
2741 2980 0.034477 GGGAAGCGGGATCCTTTTCA 60.034 55.000 12.58 0.00 37.14 2.69
2742 2981 1.383523 GGAAGCGGGATCCTTTTCAG 58.616 55.000 12.58 0.00 33.98 3.02
2743 2982 1.383523 GAAGCGGGATCCTTTTCAGG 58.616 55.000 12.58 0.00 42.50 3.86
2751 2990 3.274823 TCCTTTTCAGGAGGTGGGT 57.725 52.632 0.00 0.00 45.20 4.51
2752 2991 0.771127 TCCTTTTCAGGAGGTGGGTG 59.229 55.000 0.00 0.00 45.20 4.61
2753 2992 0.895559 CCTTTTCAGGAGGTGGGTGC 60.896 60.000 0.00 0.00 44.19 5.01
2754 2993 0.111253 CTTTTCAGGAGGTGGGTGCT 59.889 55.000 0.00 0.00 0.00 4.40
2755 2994 0.555769 TTTTCAGGAGGTGGGTGCTT 59.444 50.000 0.00 0.00 0.00 3.91
2756 2995 1.440618 TTTCAGGAGGTGGGTGCTTA 58.559 50.000 0.00 0.00 0.00 3.09
2757 2996 1.440618 TTCAGGAGGTGGGTGCTTAA 58.559 50.000 0.00 0.00 0.00 1.85
2758 2997 1.440618 TCAGGAGGTGGGTGCTTAAA 58.559 50.000 0.00 0.00 0.00 1.52
2759 2998 1.777878 TCAGGAGGTGGGTGCTTAAAA 59.222 47.619 0.00 0.00 0.00 1.52
2760 2999 2.175931 TCAGGAGGTGGGTGCTTAAAAA 59.824 45.455 0.00 0.00 0.00 1.94
2761 3000 2.558359 CAGGAGGTGGGTGCTTAAAAAG 59.442 50.000 0.00 0.00 0.00 2.27
2762 3001 2.445525 AGGAGGTGGGTGCTTAAAAAGA 59.554 45.455 0.00 0.00 0.00 2.52
2763 3002 3.117284 AGGAGGTGGGTGCTTAAAAAGAA 60.117 43.478 0.00 0.00 0.00 2.52
2764 3003 3.639561 GGAGGTGGGTGCTTAAAAAGAAA 59.360 43.478 0.00 0.00 0.00 2.52
2765 3004 4.100344 GGAGGTGGGTGCTTAAAAAGAAAA 59.900 41.667 0.00 0.00 0.00 2.29
2766 3005 5.395879 GGAGGTGGGTGCTTAAAAAGAAAAA 60.396 40.000 0.00 0.00 0.00 1.94
2786 3025 5.964958 AAAATGTGGTCCTGTGACATAAG 57.035 39.130 0.00 0.00 43.65 1.73
2787 3026 2.472695 TGTGGTCCTGTGACATAAGC 57.527 50.000 0.00 0.00 43.65 3.09
2788 3027 1.977854 TGTGGTCCTGTGACATAAGCT 59.022 47.619 0.00 0.00 43.65 3.74
2789 3028 2.289631 TGTGGTCCTGTGACATAAGCTG 60.290 50.000 0.00 0.00 43.65 4.24
2790 3029 2.028112 GTGGTCCTGTGACATAAGCTGA 60.028 50.000 0.00 0.00 43.65 4.26
2791 3030 2.637382 TGGTCCTGTGACATAAGCTGAA 59.363 45.455 0.00 0.00 43.65 3.02
2792 3031 3.072330 TGGTCCTGTGACATAAGCTGAAA 59.928 43.478 0.00 0.00 43.65 2.69
2793 3032 4.072131 GGTCCTGTGACATAAGCTGAAAA 58.928 43.478 0.00 0.00 43.65 2.29
2794 3033 4.518970 GGTCCTGTGACATAAGCTGAAAAA 59.481 41.667 0.00 0.00 43.65 1.94
2795 3034 5.335191 GGTCCTGTGACATAAGCTGAAAAAG 60.335 44.000 0.00 0.00 43.65 2.27
2796 3035 5.239525 GTCCTGTGACATAAGCTGAAAAAGT 59.760 40.000 0.00 0.00 41.37 2.66
2797 3036 5.827797 TCCTGTGACATAAGCTGAAAAAGTT 59.172 36.000 0.00 0.00 0.00 2.66
2798 3037 5.916883 CCTGTGACATAAGCTGAAAAAGTTG 59.083 40.000 0.00 0.00 0.00 3.16
2799 3038 5.830912 TGTGACATAAGCTGAAAAAGTTGG 58.169 37.500 0.00 0.00 0.00 3.77
2800 3039 5.592282 TGTGACATAAGCTGAAAAAGTTGGA 59.408 36.000 0.00 0.00 0.00 3.53
2801 3040 6.145535 GTGACATAAGCTGAAAAAGTTGGAG 58.854 40.000 0.00 0.00 0.00 3.86
2802 3041 5.827797 TGACATAAGCTGAAAAAGTTGGAGT 59.172 36.000 0.00 0.00 0.00 3.85
2803 3042 6.076981 ACATAAGCTGAAAAAGTTGGAGTG 57.923 37.500 0.00 0.00 0.00 3.51
2804 3043 5.827797 ACATAAGCTGAAAAAGTTGGAGTGA 59.172 36.000 0.00 0.00 0.00 3.41
2805 3044 6.321181 ACATAAGCTGAAAAAGTTGGAGTGAA 59.679 34.615 0.00 0.00 0.00 3.18
2806 3045 5.659440 AAGCTGAAAAAGTTGGAGTGAAA 57.341 34.783 0.00 0.00 0.00 2.69
2807 3046 5.659440 AGCTGAAAAAGTTGGAGTGAAAA 57.341 34.783 0.00 0.00 0.00 2.29
2808 3047 5.654497 AGCTGAAAAAGTTGGAGTGAAAAG 58.346 37.500 0.00 0.00 0.00 2.27
2809 3048 5.185828 AGCTGAAAAAGTTGGAGTGAAAAGT 59.814 36.000 0.00 0.00 0.00 2.66
2810 3049 6.377146 AGCTGAAAAAGTTGGAGTGAAAAGTA 59.623 34.615 0.00 0.00 0.00 2.24
2811 3050 6.693113 GCTGAAAAAGTTGGAGTGAAAAGTAG 59.307 38.462 0.00 0.00 0.00 2.57
2812 3051 7.415206 GCTGAAAAAGTTGGAGTGAAAAGTAGA 60.415 37.037 0.00 0.00 0.00 2.59
2813 3052 7.985476 TGAAAAAGTTGGAGTGAAAAGTAGAG 58.015 34.615 0.00 0.00 0.00 2.43
2814 3053 7.827236 TGAAAAAGTTGGAGTGAAAAGTAGAGA 59.173 33.333 0.00 0.00 0.00 3.10
2815 3054 8.753497 AAAAAGTTGGAGTGAAAAGTAGAGAT 57.247 30.769 0.00 0.00 0.00 2.75
2816 3055 7.736447 AAAGTTGGAGTGAAAAGTAGAGATG 57.264 36.000 0.00 0.00 0.00 2.90
2817 3056 5.241662 AGTTGGAGTGAAAAGTAGAGATGC 58.758 41.667 0.00 0.00 0.00 3.91
2818 3057 4.890158 TGGAGTGAAAAGTAGAGATGCA 57.110 40.909 0.00 0.00 0.00 3.96
2819 3058 5.426689 TGGAGTGAAAAGTAGAGATGCAT 57.573 39.130 0.00 0.00 0.00 3.96
2820 3059 5.181009 TGGAGTGAAAAGTAGAGATGCATG 58.819 41.667 2.46 0.00 0.00 4.06
2821 3060 5.181748 GGAGTGAAAAGTAGAGATGCATGT 58.818 41.667 2.46 0.00 0.00 3.21
2822 3061 6.070824 TGGAGTGAAAAGTAGAGATGCATGTA 60.071 38.462 2.46 0.00 0.00 2.29
2823 3062 6.989169 GGAGTGAAAAGTAGAGATGCATGTAT 59.011 38.462 2.46 0.00 0.00 2.29
2824 3063 8.144478 GGAGTGAAAAGTAGAGATGCATGTATA 58.856 37.037 2.46 0.00 0.00 1.47
2825 3064 8.879342 AGTGAAAAGTAGAGATGCATGTATAC 57.121 34.615 18.19 18.19 0.00 1.47
2826 3065 8.700051 AGTGAAAAGTAGAGATGCATGTATACT 58.300 33.333 21.68 21.68 30.57 2.12
2827 3066 9.967346 GTGAAAAGTAGAGATGCATGTATACTA 57.033 33.333 25.89 11.82 29.43 1.82
2833 3072 9.581289 AGTAGAGATGCATGTATACTAAAGTCT 57.419 33.333 24.83 3.46 27.99 3.24
2877 3116 2.698855 CCACTAGTGGTAGCTTGCAT 57.301 50.000 30.57 0.00 45.53 3.96
2878 3117 2.991250 CCACTAGTGGTAGCTTGCATT 58.009 47.619 30.57 0.00 45.53 3.56
2879 3118 2.679837 CCACTAGTGGTAGCTTGCATTG 59.320 50.000 30.57 3.32 45.53 2.82
2880 3119 2.679837 CACTAGTGGTAGCTTGCATTGG 59.320 50.000 15.49 0.00 0.00 3.16
2881 3120 2.292267 CTAGTGGTAGCTTGCATTGGG 58.708 52.381 0.00 0.00 0.00 4.12
2882 3121 0.323725 AGTGGTAGCTTGCATTGGGG 60.324 55.000 0.00 0.00 0.00 4.96
2883 3122 0.323360 GTGGTAGCTTGCATTGGGGA 60.323 55.000 0.00 0.00 0.00 4.81
2884 3123 0.034186 TGGTAGCTTGCATTGGGGAG 60.034 55.000 0.00 0.00 0.00 4.30
2885 3124 0.255890 GGTAGCTTGCATTGGGGAGA 59.744 55.000 0.00 0.00 0.00 3.71
2886 3125 1.340991 GGTAGCTTGCATTGGGGAGAA 60.341 52.381 0.00 0.00 0.00 2.87
2887 3126 2.446435 GTAGCTTGCATTGGGGAGAAA 58.554 47.619 0.00 0.00 0.00 2.52
2888 3127 2.014010 AGCTTGCATTGGGGAGAAAA 57.986 45.000 0.00 0.00 0.00 2.29
2889 3128 2.328319 AGCTTGCATTGGGGAGAAAAA 58.672 42.857 0.00 0.00 0.00 1.94
2939 3178 6.882610 TTTTGTCATGAGGCATATGTATCC 57.117 37.500 4.29 0.00 0.00 2.59
2940 3179 5.565455 TTGTCATGAGGCATATGTATCCA 57.435 39.130 4.29 0.00 0.00 3.41
2941 3180 5.767277 TGTCATGAGGCATATGTATCCAT 57.233 39.130 4.29 1.04 34.97 3.41
2942 3181 6.872585 TGTCATGAGGCATATGTATCCATA 57.127 37.500 4.29 0.00 37.92 2.74
2943 3182 7.441903 TGTCATGAGGCATATGTATCCATAT 57.558 36.000 4.29 0.00 43.54 1.78
2956 3195 7.870509 ATGTATCCATATGCCATCATTGTAC 57.129 36.000 0.00 0.00 34.22 2.90
2957 3196 6.777782 TGTATCCATATGCCATCATTGTACA 58.222 36.000 0.00 0.00 34.22 2.90
2958 3197 7.404481 TGTATCCATATGCCATCATTGTACAT 58.596 34.615 0.00 0.00 34.22 2.29
2959 3198 6.769134 ATCCATATGCCATCATTGTACATG 57.231 37.500 0.00 0.00 34.22 3.21
2960 3199 4.460034 TCCATATGCCATCATTGTACATGC 59.540 41.667 0.00 0.00 34.22 4.06
2961 3200 4.381185 CCATATGCCATCATTGTACATGCC 60.381 45.833 0.00 0.00 34.22 4.40
2962 3201 1.401761 TGCCATCATTGTACATGCCC 58.598 50.000 0.00 0.00 0.00 5.36
3044 3283 6.405842 CCAGGTTCAAAAGCAGAAAGTAAACT 60.406 38.462 0.00 0.00 0.00 2.66
3045 3284 6.473455 CAGGTTCAAAAGCAGAAAGTAAACTG 59.527 38.462 0.00 0.00 37.22 3.16
3112 3351 2.614057 GCAGATTAGTGGGTTTGGATCG 59.386 50.000 0.00 0.00 0.00 3.69
3113 3352 2.614057 CAGATTAGTGGGTTTGGATCGC 59.386 50.000 0.00 0.00 0.00 4.58
3118 3369 3.508840 GGGTTTGGATCGCGGCAG 61.509 66.667 6.13 0.00 0.00 4.85
3140 3391 2.203126 CCAGAGCGCCAGATTCCC 60.203 66.667 2.29 0.00 0.00 3.97
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.541242 TGAATTGGGAGGGAAACATGT 57.459 42.857 0.00 0.00 0.00 3.21
1 2 3.770933 ACATGAATTGGGAGGGAAACATG 59.229 43.478 0.00 0.00 39.42 3.21
2 3 4.026052 GACATGAATTGGGAGGGAAACAT 58.974 43.478 0.00 0.00 0.00 2.71
3 4 3.181424 TGACATGAATTGGGAGGGAAACA 60.181 43.478 0.00 0.00 0.00 2.83
4 5 3.193479 GTGACATGAATTGGGAGGGAAAC 59.807 47.826 0.00 0.00 0.00 2.78
5 6 3.430453 GTGACATGAATTGGGAGGGAAA 58.570 45.455 0.00 0.00 0.00 3.13
6 7 2.291540 GGTGACATGAATTGGGAGGGAA 60.292 50.000 0.00 0.00 0.00 3.97
7 8 1.284785 GGTGACATGAATTGGGAGGGA 59.715 52.381 0.00 0.00 0.00 4.20
8 9 1.285962 AGGTGACATGAATTGGGAGGG 59.714 52.381 0.00 0.00 0.00 4.30
9 10 2.814805 AGGTGACATGAATTGGGAGG 57.185 50.000 0.00 0.00 0.00 4.30
10 11 4.588899 TGTTAGGTGACATGAATTGGGAG 58.411 43.478 0.00 0.00 0.00 4.30
11 12 4.649267 TGTTAGGTGACATGAATTGGGA 57.351 40.909 0.00 0.00 0.00 4.37
12 13 5.720371 TTTGTTAGGTGACATGAATTGGG 57.280 39.130 0.00 0.00 0.00 4.12
13 14 6.642131 CAGTTTTGTTAGGTGACATGAATTGG 59.358 38.462 0.00 0.00 0.00 3.16
14 15 6.642131 CCAGTTTTGTTAGGTGACATGAATTG 59.358 38.462 0.00 0.00 0.00 2.32
15 16 6.323739 ACCAGTTTTGTTAGGTGACATGAATT 59.676 34.615 0.00 0.00 32.04 2.17
16 17 5.833131 ACCAGTTTTGTTAGGTGACATGAAT 59.167 36.000 0.00 0.00 32.04 2.57
17 18 5.197451 ACCAGTTTTGTTAGGTGACATGAA 58.803 37.500 0.00 0.00 32.04 2.57
18 19 4.787551 ACCAGTTTTGTTAGGTGACATGA 58.212 39.130 0.00 0.00 32.04 3.07
19 20 5.280945 CAACCAGTTTTGTTAGGTGACATG 58.719 41.667 0.00 0.00 33.93 3.21
28 29 5.415221 CCTTTTCTGCAACCAGTTTTGTTA 58.585 37.500 0.00 0.00 40.09 2.41
32 33 2.170397 CCCCTTTTCTGCAACCAGTTTT 59.830 45.455 0.00 0.00 40.09 2.43
34 35 1.063266 TCCCCTTTTCTGCAACCAGTT 60.063 47.619 0.00 0.00 40.09 3.16
37 38 1.549950 GGATCCCCTTTTCTGCAACCA 60.550 52.381 0.00 0.00 0.00 3.67
38 39 1.186200 GGATCCCCTTTTCTGCAACC 58.814 55.000 0.00 0.00 0.00 3.77
40 41 4.608170 ATTAGGATCCCCTTTTCTGCAA 57.392 40.909 8.55 0.00 40.78 4.08
42 43 5.422012 TCAAAATTAGGATCCCCTTTTCTGC 59.578 40.000 8.55 0.00 40.78 4.26
43 44 6.891908 TCTCAAAATTAGGATCCCCTTTTCTG 59.108 38.462 8.55 7.14 40.78 3.02
44 45 7.044496 TCTCAAAATTAGGATCCCCTTTTCT 57.956 36.000 8.55 0.00 40.78 2.52
46 47 9.782900 TTAATCTCAAAATTAGGATCCCCTTTT 57.217 29.630 8.55 9.20 40.78 2.27
50 51 6.209589 GCCTTAATCTCAAAATTAGGATCCCC 59.790 42.308 8.55 0.00 0.00 4.81
51 52 6.777580 TGCCTTAATCTCAAAATTAGGATCCC 59.222 38.462 8.55 0.00 0.00 3.85
104 107 9.787532 CGAATATAGTGGTTGAATGAAAATGTT 57.212 29.630 0.00 0.00 0.00 2.71
115 118 7.591421 TTATCACCTCGAATATAGTGGTTGA 57.409 36.000 3.07 5.27 33.71 3.18
116 119 7.095607 GCTTTATCACCTCGAATATAGTGGTTG 60.096 40.741 3.07 1.36 33.71 3.77
117 120 6.929606 GCTTTATCACCTCGAATATAGTGGTT 59.070 38.462 3.07 0.00 33.71 3.67
119 122 6.587990 CAGCTTTATCACCTCGAATATAGTGG 59.412 42.308 0.00 0.00 0.00 4.00
120 123 6.090088 GCAGCTTTATCACCTCGAATATAGTG 59.910 42.308 0.00 0.00 0.00 2.74
121 124 6.159988 GCAGCTTTATCACCTCGAATATAGT 58.840 40.000 0.00 0.00 0.00 2.12
122 125 6.090088 GTGCAGCTTTATCACCTCGAATATAG 59.910 42.308 0.00 0.00 0.00 1.31
129 132 1.009829 GGTGCAGCTTTATCACCTCG 58.990 55.000 9.07 0.00 45.04 4.63
144 147 3.667429 GACGGCATTTGCTCGGTGC 62.667 63.158 14.70 0.00 41.70 5.01
149 152 1.300971 TGCAGAGACGGCATTTGCTC 61.301 55.000 12.00 0.00 41.70 4.26
174 178 0.106769 AGTGTTGGGTGTGTGCATCA 60.107 50.000 0.00 0.00 0.00 3.07
217 223 9.480538 TTTTTCGTATTATCGCAGTAAAATGAC 57.519 29.630 0.00 0.00 0.00 3.06
242 248 3.846588 TCAAATAGGAGAGTCTGGGCTTT 59.153 43.478 0.00 0.00 0.00 3.51
251 260 6.043012 CCCTGATCAAGATCAAATAGGAGAGT 59.957 42.308 13.25 0.00 46.10 3.24
279 288 3.333804 CCATTTACATTTGTGGTTGCCC 58.666 45.455 0.00 0.00 0.00 5.36
306 315 4.202357 TGCTTGTCTCTAGAAAAGGCTTCA 60.202 41.667 11.08 0.00 39.28 3.02
349 358 6.195700 ACTACTACCACTGATATGACTTGGT 58.804 40.000 0.00 0.00 43.17 3.67
547 559 3.630769 GGACGGGAATAATGGTCCTTTTC 59.369 47.826 1.96 0.00 44.35 2.29
646 683 6.359804 CATCATAACCTTCCATCCAGAAAGA 58.640 40.000 0.00 0.00 0.00 2.52
647 684 5.533903 CCATCATAACCTTCCATCCAGAAAG 59.466 44.000 0.00 0.00 0.00 2.62
716 761 0.250513 AGAACCAGAACCATCTCGCC 59.749 55.000 0.00 0.00 32.03 5.54
744 789 0.327095 TGCAGCCAGGGGTAGGAATA 60.327 55.000 0.00 0.00 0.00 1.75
758 803 5.624344 ACATTAGCAGATCATTATGCAGC 57.376 39.130 7.34 0.00 45.01 5.25
844 894 3.825014 GTGTACTTGGTGTGGAGTAGAGA 59.175 47.826 0.00 0.00 0.00 3.10
851 901 1.049855 ACGGGTGTACTTGGTGTGGA 61.050 55.000 0.00 0.00 0.00 4.02
907 963 1.079057 GAGGAAGACTTGGACGGCC 60.079 63.158 0.00 0.00 0.00 6.13
911 967 1.828595 GAGAGGGAGGAAGACTTGGAC 59.171 57.143 0.00 0.00 0.00 4.02
912 968 1.719378 AGAGAGGGAGGAAGACTTGGA 59.281 52.381 0.00 0.00 0.00 3.53
913 969 2.107366 GAGAGAGGGAGGAAGACTTGG 58.893 57.143 0.00 0.00 0.00 3.61
914 970 1.748493 CGAGAGAGGGAGGAAGACTTG 59.252 57.143 0.00 0.00 0.00 3.16
915 971 1.341581 CCGAGAGAGGGAGGAAGACTT 60.342 57.143 0.00 0.00 0.00 3.01
916 972 0.257616 CCGAGAGAGGGAGGAAGACT 59.742 60.000 0.00 0.00 0.00 3.24
917 973 1.388837 GCCGAGAGAGGGAGGAAGAC 61.389 65.000 0.00 0.00 0.00 3.01
918 974 1.076632 GCCGAGAGAGGGAGGAAGA 60.077 63.158 0.00 0.00 0.00 2.87
919 975 1.076339 AGCCGAGAGAGGGAGGAAG 60.076 63.158 0.00 0.00 0.00 3.46
920 976 1.076632 GAGCCGAGAGAGGGAGGAA 60.077 63.158 0.00 0.00 0.00 3.36
921 977 2.598467 GAGCCGAGAGAGGGAGGA 59.402 66.667 0.00 0.00 0.00 3.71
939 995 2.185608 GACGGGAAGAGCAGAGCC 59.814 66.667 0.00 0.00 0.00 4.70
944 1000 1.863662 GACACGAGACGGGAAGAGCA 61.864 60.000 0.00 0.00 32.98 4.26
945 1001 1.153997 GACACGAGACGGGAAGAGC 60.154 63.158 0.00 0.00 32.98 4.09
952 1008 0.248907 AACACACAGACACGAGACGG 60.249 55.000 0.00 0.00 0.00 4.79
961 1017 3.609103 ATTTCTCGCAAACACACAGAC 57.391 42.857 0.00 0.00 0.00 3.51
1062 1123 3.873449 GACTCGTCGTCGACCTCT 58.127 61.111 19.29 1.53 41.35 3.69
1387 1460 1.097547 AGAAATGAATGCCGGAGCCG 61.098 55.000 5.05 1.06 38.69 5.52
1388 1461 0.665298 GAGAAATGAATGCCGGAGCC 59.335 55.000 5.05 0.00 38.69 4.70
1389 1462 1.332997 CAGAGAAATGAATGCCGGAGC 59.667 52.381 5.05 0.00 40.48 4.70
1390 1463 1.332997 GCAGAGAAATGAATGCCGGAG 59.667 52.381 5.05 0.00 32.49 4.63
1391 1464 1.065199 AGCAGAGAAATGAATGCCGGA 60.065 47.619 5.05 0.00 39.51 5.14
1392 1465 1.332997 GAGCAGAGAAATGAATGCCGG 59.667 52.381 0.00 0.00 39.51 6.13
1393 1466 2.031807 CAGAGCAGAGAAATGAATGCCG 59.968 50.000 0.00 0.00 39.51 5.69
1394 1467 3.015327 ACAGAGCAGAGAAATGAATGCC 58.985 45.455 0.00 0.00 39.51 4.40
1395 1468 3.731264 GCACAGAGCAGAGAAATGAATGC 60.731 47.826 0.00 0.00 44.79 3.56
1396 1469 4.017380 GCACAGAGCAGAGAAATGAATG 57.983 45.455 0.00 0.00 44.79 2.67
1510 1590 1.968493 TGGAGCTTCTCGTACAGGTTT 59.032 47.619 0.00 0.00 0.00 3.27
1585 1686 4.394712 GCCTGCGCCACCTGTAGT 62.395 66.667 4.18 0.00 0.00 2.73
2214 2347 1.919956 GCTCCATGTGTGCAGCTCAC 61.920 60.000 18.83 18.83 45.82 3.51
2215 2348 1.673337 GCTCCATGTGTGCAGCTCA 60.673 57.895 0.00 0.00 33.65 4.26
2216 2349 2.404995 GGCTCCATGTGTGCAGCTC 61.405 63.158 0.00 0.00 35.15 4.09
2217 2350 2.360852 GGCTCCATGTGTGCAGCT 60.361 61.111 0.00 0.00 35.15 4.24
2218 2351 2.360852 AGGCTCCATGTGTGCAGC 60.361 61.111 0.00 0.00 35.15 5.25
2295 2439 1.324383 TTCCCCACGCCTTTTCTTTC 58.676 50.000 0.00 0.00 0.00 2.62
2299 2445 1.684450 TCTTTTTCCCCACGCCTTTTC 59.316 47.619 0.00 0.00 0.00 2.29
2408 2568 6.978674 TTAGTCTTTTTCCTCTCTCTCACA 57.021 37.500 0.00 0.00 0.00 3.58
2410 2570 7.792032 TGTTTTAGTCTTTTTCCTCTCTCTCA 58.208 34.615 0.00 0.00 0.00 3.27
2416 2576 7.147897 CCCAGTTTGTTTTAGTCTTTTTCCTCT 60.148 37.037 0.00 0.00 0.00 3.69
2496 2656 5.683859 CAGCAAGAACACTCAATGTACTTC 58.316 41.667 0.00 0.00 42.31 3.01
2557 2796 0.544595 AGGTAGAAGCCCGGTGACTT 60.545 55.000 0.00 0.17 0.00 3.01
2558 2797 1.078710 AGGTAGAAGCCCGGTGACT 59.921 57.895 0.00 0.00 0.00 3.41
2559 2798 1.218316 CAGGTAGAAGCCCGGTGAC 59.782 63.158 0.00 0.00 0.00 3.67
2560 2799 1.229082 ACAGGTAGAAGCCCGGTGA 60.229 57.895 0.00 0.00 0.00 4.02
2561 2800 1.079127 CACAGGTAGAAGCCCGGTG 60.079 63.158 0.00 0.00 40.80 4.94
2562 2801 1.229082 TCACAGGTAGAAGCCCGGT 60.229 57.895 0.00 0.00 0.00 5.28
2563 2802 1.218316 GTCACAGGTAGAAGCCCGG 59.782 63.158 0.00 0.00 0.00 5.73
2564 2803 1.153823 CGTCACAGGTAGAAGCCCG 60.154 63.158 0.00 0.00 0.00 6.13
2565 2804 1.218316 CCGTCACAGGTAGAAGCCC 59.782 63.158 0.00 0.00 0.00 5.19
2566 2805 1.218316 CCCGTCACAGGTAGAAGCC 59.782 63.158 0.00 0.00 0.00 4.35
2567 2806 0.320697 AACCCGTCACAGGTAGAAGC 59.679 55.000 0.00 0.00 36.27 3.86
2568 2807 2.036733 TCAAACCCGTCACAGGTAGAAG 59.963 50.000 0.00 0.00 36.27 2.85
2575 2814 1.507141 GGCTGTCAAACCCGTCACAG 61.507 60.000 0.00 0.00 39.47 3.66
2610 2849 1.001924 CACGGCAGCACAACAATTGTA 60.002 47.619 12.39 0.00 43.23 2.41
2618 2857 2.069465 AAATTCGCACGGCAGCACAA 62.069 50.000 0.00 0.00 0.00 3.33
2639 2878 3.820467 GCTATGCATTGTACATGCCCTAA 59.180 43.478 20.37 8.34 43.94 2.69
2640 2879 3.411446 GCTATGCATTGTACATGCCCTA 58.589 45.455 20.37 13.77 43.94 3.53
2641 2880 2.233271 GCTATGCATTGTACATGCCCT 58.767 47.619 20.37 13.49 43.94 5.19
2642 2881 1.270550 GGCTATGCATTGTACATGCCC 59.729 52.381 20.37 13.59 43.94 5.36
2643 2882 2.233271 AGGCTATGCATTGTACATGCC 58.767 47.619 20.37 7.92 43.94 4.40
2644 2883 3.996150 AAGGCTATGCATTGTACATGC 57.004 42.857 3.54 17.91 44.76 4.06
2645 2884 5.007626 ACGTTAAGGCTATGCATTGTACATG 59.992 40.000 3.54 0.00 33.64 3.21
2646 2885 5.007626 CACGTTAAGGCTATGCATTGTACAT 59.992 40.000 3.54 0.00 33.64 2.29
2647 2886 4.331443 CACGTTAAGGCTATGCATTGTACA 59.669 41.667 3.54 0.00 33.64 2.90
2648 2887 4.569162 TCACGTTAAGGCTATGCATTGTAC 59.431 41.667 3.54 0.42 33.64 2.90
2649 2888 4.760878 TCACGTTAAGGCTATGCATTGTA 58.239 39.130 3.54 0.00 33.64 2.41
2650 2889 3.605634 TCACGTTAAGGCTATGCATTGT 58.394 40.909 3.54 0.00 33.64 2.71
2651 2890 4.035558 ACATCACGTTAAGGCTATGCATTG 59.964 41.667 3.54 3.55 33.64 2.82
2652 2891 4.199310 ACATCACGTTAAGGCTATGCATT 58.801 39.130 3.54 0.00 36.30 3.56
2653 2892 3.808728 ACATCACGTTAAGGCTATGCAT 58.191 40.909 3.79 3.79 0.00 3.96
2654 2893 3.118775 AGACATCACGTTAAGGCTATGCA 60.119 43.478 9.17 0.00 0.00 3.96
2655 2894 3.458189 AGACATCACGTTAAGGCTATGC 58.542 45.455 9.17 0.00 0.00 3.14
2656 2895 3.731216 CGAGACATCACGTTAAGGCTATG 59.269 47.826 8.14 8.14 0.00 2.23
2657 2896 3.795826 GCGAGACATCACGTTAAGGCTAT 60.796 47.826 0.00 0.00 32.62 2.97
2658 2897 2.479049 GCGAGACATCACGTTAAGGCTA 60.479 50.000 0.00 0.00 32.62 3.93
2659 2898 1.736032 GCGAGACATCACGTTAAGGCT 60.736 52.381 0.84 0.00 32.62 4.58
2660 2899 0.645868 GCGAGACATCACGTTAAGGC 59.354 55.000 0.84 0.00 32.62 4.35
2661 2900 1.990799 TGCGAGACATCACGTTAAGG 58.009 50.000 0.84 0.00 32.62 2.69
2662 2901 2.285256 GCATGCGAGACATCACGTTAAG 60.285 50.000 0.00 0.00 36.64 1.85
2663 2902 1.658596 GCATGCGAGACATCACGTTAA 59.341 47.619 0.00 0.00 36.64 2.01
2664 2903 1.277326 GCATGCGAGACATCACGTTA 58.723 50.000 0.00 0.00 36.64 3.18
2665 2904 1.361668 GGCATGCGAGACATCACGTT 61.362 55.000 12.44 0.00 36.64 3.99
2666 2905 1.811266 GGCATGCGAGACATCACGT 60.811 57.895 12.44 0.00 36.64 4.49
2667 2906 1.156034 ATGGCATGCGAGACATCACG 61.156 55.000 12.44 0.00 36.64 4.35
2668 2907 0.306840 CATGGCATGCGAGACATCAC 59.693 55.000 15.53 0.00 36.64 3.06
2669 2908 0.107557 ACATGGCATGCGAGACATCA 60.108 50.000 26.70 1.95 36.64 3.07
2670 2909 1.797046 CTACATGGCATGCGAGACATC 59.203 52.381 26.70 0.00 36.64 3.06
2671 2910 1.541889 CCTACATGGCATGCGAGACAT 60.542 52.381 26.70 8.49 40.66 3.06
2672 2911 0.179076 CCTACATGGCATGCGAGACA 60.179 55.000 26.70 4.00 0.00 3.41
2673 2912 0.104855 TCCTACATGGCATGCGAGAC 59.895 55.000 26.70 0.00 35.26 3.36
2674 2913 1.001293 GATCCTACATGGCATGCGAGA 59.999 52.381 26.70 19.56 35.26 4.04
2675 2914 1.436600 GATCCTACATGGCATGCGAG 58.563 55.000 26.70 22.01 35.26 5.03
2676 2915 0.319813 CGATCCTACATGGCATGCGA 60.320 55.000 26.70 19.03 35.26 5.10
2677 2916 1.293963 CCGATCCTACATGGCATGCG 61.294 60.000 26.70 19.33 35.26 4.73
2678 2917 0.035317 TCCGATCCTACATGGCATGC 59.965 55.000 26.70 9.90 35.26 4.06
2679 2918 2.775911 ATCCGATCCTACATGGCATG 57.224 50.000 25.31 25.31 35.26 4.06
2680 2919 4.033009 TCATATCCGATCCTACATGGCAT 58.967 43.478 0.00 0.00 35.26 4.40
2681 2920 3.195610 GTCATATCCGATCCTACATGGCA 59.804 47.826 0.00 0.00 35.26 4.92
2682 2921 3.735208 CGTCATATCCGATCCTACATGGC 60.735 52.174 0.00 0.00 35.26 4.40
2683 2922 3.444034 ACGTCATATCCGATCCTACATGG 59.556 47.826 0.00 0.00 37.10 3.66
2684 2923 4.703645 ACGTCATATCCGATCCTACATG 57.296 45.455 0.00 0.00 0.00 3.21
2685 2924 6.433404 ACTTTACGTCATATCCGATCCTACAT 59.567 38.462 0.00 0.00 0.00 2.29
2686 2925 5.766670 ACTTTACGTCATATCCGATCCTACA 59.233 40.000 0.00 0.00 0.00 2.74
2687 2926 6.251655 ACTTTACGTCATATCCGATCCTAC 57.748 41.667 0.00 0.00 0.00 3.18
2688 2927 6.596888 CCTACTTTACGTCATATCCGATCCTA 59.403 42.308 0.00 0.00 0.00 2.94
2689 2928 5.415077 CCTACTTTACGTCATATCCGATCCT 59.585 44.000 0.00 0.00 0.00 3.24
2690 2929 5.182760 ACCTACTTTACGTCATATCCGATCC 59.817 44.000 0.00 0.00 0.00 3.36
2691 2930 6.251655 ACCTACTTTACGTCATATCCGATC 57.748 41.667 0.00 0.00 0.00 3.69
2692 2931 6.567321 CGAACCTACTTTACGTCATATCCGAT 60.567 42.308 0.00 0.00 0.00 4.18
2693 2932 5.277490 CGAACCTACTTTACGTCATATCCGA 60.277 44.000 0.00 0.00 0.00 4.55
2694 2933 4.908156 CGAACCTACTTTACGTCATATCCG 59.092 45.833 0.00 0.00 0.00 4.18
2695 2934 5.009010 TCCGAACCTACTTTACGTCATATCC 59.991 44.000 0.00 0.00 0.00 2.59
2696 2935 6.064846 TCCGAACCTACTTTACGTCATATC 57.935 41.667 0.00 0.00 0.00 1.63
2697 2936 6.645790 ATCCGAACCTACTTTACGTCATAT 57.354 37.500 0.00 0.00 0.00 1.78
2698 2937 6.205464 CCTATCCGAACCTACTTTACGTCATA 59.795 42.308 0.00 0.00 0.00 2.15
2699 2938 4.996788 ATCCGAACCTACTTTACGTCAT 57.003 40.909 0.00 0.00 0.00 3.06
2700 2939 4.336433 CCTATCCGAACCTACTTTACGTCA 59.664 45.833 0.00 0.00 0.00 4.35
2701 2940 4.261363 CCCTATCCGAACCTACTTTACGTC 60.261 50.000 0.00 0.00 0.00 4.34
2702 2941 3.633986 CCCTATCCGAACCTACTTTACGT 59.366 47.826 0.00 0.00 0.00 3.57
2703 2942 3.885297 TCCCTATCCGAACCTACTTTACG 59.115 47.826 0.00 0.00 0.00 3.18
2704 2943 5.738495 GCTTCCCTATCCGAACCTACTTTAC 60.738 48.000 0.00 0.00 0.00 2.01
2705 2944 4.343239 GCTTCCCTATCCGAACCTACTTTA 59.657 45.833 0.00 0.00 0.00 1.85
2706 2945 3.134262 GCTTCCCTATCCGAACCTACTTT 59.866 47.826 0.00 0.00 0.00 2.66
2707 2946 2.699321 GCTTCCCTATCCGAACCTACTT 59.301 50.000 0.00 0.00 0.00 2.24
2708 2947 2.317973 GCTTCCCTATCCGAACCTACT 58.682 52.381 0.00 0.00 0.00 2.57
2709 2948 1.000496 CGCTTCCCTATCCGAACCTAC 60.000 57.143 0.00 0.00 0.00 3.18
2710 2949 1.325355 CGCTTCCCTATCCGAACCTA 58.675 55.000 0.00 0.00 0.00 3.08
2711 2950 1.400530 CCGCTTCCCTATCCGAACCT 61.401 60.000 0.00 0.00 0.00 3.50
2712 2951 1.069258 CCGCTTCCCTATCCGAACC 59.931 63.158 0.00 0.00 0.00 3.62
2713 2952 1.069258 CCCGCTTCCCTATCCGAAC 59.931 63.158 0.00 0.00 0.00 3.95
2714 2953 0.471211 ATCCCGCTTCCCTATCCGAA 60.471 55.000 0.00 0.00 0.00 4.30
2715 2954 0.898789 GATCCCGCTTCCCTATCCGA 60.899 60.000 0.00 0.00 0.00 4.55
2716 2955 1.592223 GATCCCGCTTCCCTATCCG 59.408 63.158 0.00 0.00 0.00 4.18
2717 2956 0.545548 AGGATCCCGCTTCCCTATCC 60.546 60.000 8.55 0.00 37.05 2.59
2718 2957 1.353091 AAGGATCCCGCTTCCCTATC 58.647 55.000 8.55 0.00 33.45 2.08
2719 2958 1.821088 AAAGGATCCCGCTTCCCTAT 58.179 50.000 8.55 0.00 33.45 2.57
2720 2959 1.489230 GAAAAGGATCCCGCTTCCCTA 59.511 52.381 8.55 0.00 33.45 3.53
2721 2960 0.256177 GAAAAGGATCCCGCTTCCCT 59.744 55.000 8.55 0.00 33.45 4.20
2722 2961 0.034477 TGAAAAGGATCCCGCTTCCC 60.034 55.000 8.55 0.00 33.45 3.97
2723 2962 1.383523 CTGAAAAGGATCCCGCTTCC 58.616 55.000 8.55 0.00 0.00 3.46
2724 2963 1.065418 TCCTGAAAAGGATCCCGCTTC 60.065 52.381 8.55 9.44 32.09 3.86
2725 2964 0.991920 TCCTGAAAAGGATCCCGCTT 59.008 50.000 8.55 0.00 32.09 4.68
2726 2965 0.543749 CTCCTGAAAAGGATCCCGCT 59.456 55.000 8.55 0.00 37.34 5.52
2727 2966 0.464554 CCTCCTGAAAAGGATCCCGC 60.465 60.000 8.55 0.00 37.34 6.13
2728 2967 0.912486 ACCTCCTGAAAAGGATCCCG 59.088 55.000 8.55 0.00 37.34 5.14
2729 2968 1.064389 CCACCTCCTGAAAAGGATCCC 60.064 57.143 8.55 0.00 37.34 3.85
2730 2969 1.064389 CCCACCTCCTGAAAAGGATCC 60.064 57.143 2.48 2.48 37.34 3.36
2731 2970 1.636003 ACCCACCTCCTGAAAAGGATC 59.364 52.381 0.00 0.00 37.34 3.36
2732 2971 1.355720 CACCCACCTCCTGAAAAGGAT 59.644 52.381 0.00 0.00 37.34 3.24
2733 2972 0.771127 CACCCACCTCCTGAAAAGGA 59.229 55.000 0.00 0.00 37.35 3.36
2734 2973 0.895559 GCACCCACCTCCTGAAAAGG 60.896 60.000 0.00 0.00 39.96 3.11
2735 2974 0.111253 AGCACCCACCTCCTGAAAAG 59.889 55.000 0.00 0.00 0.00 2.27
2736 2975 0.555769 AAGCACCCACCTCCTGAAAA 59.444 50.000 0.00 0.00 0.00 2.29
2737 2976 1.440618 TAAGCACCCACCTCCTGAAA 58.559 50.000 0.00 0.00 0.00 2.69
2738 2977 1.440618 TTAAGCACCCACCTCCTGAA 58.559 50.000 0.00 0.00 0.00 3.02
2739 2978 1.440618 TTTAAGCACCCACCTCCTGA 58.559 50.000 0.00 0.00 0.00 3.86
2740 2979 2.286365 TTTTAAGCACCCACCTCCTG 57.714 50.000 0.00 0.00 0.00 3.86
2741 2980 2.445525 TCTTTTTAAGCACCCACCTCCT 59.554 45.455 0.00 0.00 0.00 3.69
2742 2981 2.871453 TCTTTTTAAGCACCCACCTCC 58.129 47.619 0.00 0.00 0.00 4.30
2743 2982 4.929819 TTTCTTTTTAAGCACCCACCTC 57.070 40.909 0.00 0.00 0.00 3.85
2744 2983 5.685520 TTTTTCTTTTTAAGCACCCACCT 57.314 34.783 0.00 0.00 0.00 4.00
2763 3002 5.278957 GCTTATGTCACAGGACCACATTTTT 60.279 40.000 0.87 0.00 43.65 1.94
2764 3003 4.218417 GCTTATGTCACAGGACCACATTTT 59.782 41.667 0.87 0.00 43.65 1.82
2765 3004 3.758554 GCTTATGTCACAGGACCACATTT 59.241 43.478 0.87 0.00 43.65 2.32
2766 3005 3.009473 AGCTTATGTCACAGGACCACATT 59.991 43.478 0.87 0.00 43.65 2.71
2767 3006 2.573462 AGCTTATGTCACAGGACCACAT 59.427 45.455 0.00 0.00 43.65 3.21
2768 3007 1.977854 AGCTTATGTCACAGGACCACA 59.022 47.619 0.00 0.00 43.65 4.17
2769 3008 2.028112 TCAGCTTATGTCACAGGACCAC 60.028 50.000 0.00 0.00 43.65 4.16
2770 3009 2.256306 TCAGCTTATGTCACAGGACCA 58.744 47.619 0.00 0.00 43.65 4.02
2771 3010 3.334583 TTCAGCTTATGTCACAGGACC 57.665 47.619 0.00 0.00 43.65 4.46
2772 3011 5.239525 ACTTTTTCAGCTTATGTCACAGGAC 59.760 40.000 0.00 0.00 44.57 3.85
2773 3012 5.376625 ACTTTTTCAGCTTATGTCACAGGA 58.623 37.500 0.00 0.00 0.00 3.86
2774 3013 5.695851 ACTTTTTCAGCTTATGTCACAGG 57.304 39.130 0.00 0.00 0.00 4.00
2775 3014 5.916883 CCAACTTTTTCAGCTTATGTCACAG 59.083 40.000 0.00 0.00 0.00 3.66
2776 3015 5.592282 TCCAACTTTTTCAGCTTATGTCACA 59.408 36.000 0.00 0.00 0.00 3.58
2777 3016 6.072112 TCCAACTTTTTCAGCTTATGTCAC 57.928 37.500 0.00 0.00 0.00 3.67
2778 3017 5.827797 ACTCCAACTTTTTCAGCTTATGTCA 59.172 36.000 0.00 0.00 0.00 3.58
2779 3018 6.017109 TCACTCCAACTTTTTCAGCTTATGTC 60.017 38.462 0.00 0.00 0.00 3.06
2780 3019 5.827797 TCACTCCAACTTTTTCAGCTTATGT 59.172 36.000 0.00 0.00 0.00 2.29
2781 3020 6.317789 TCACTCCAACTTTTTCAGCTTATG 57.682 37.500 0.00 0.00 0.00 1.90
2782 3021 6.959639 TTCACTCCAACTTTTTCAGCTTAT 57.040 33.333 0.00 0.00 0.00 1.73
2783 3022 6.767524 TTTCACTCCAACTTTTTCAGCTTA 57.232 33.333 0.00 0.00 0.00 3.09
2784 3023 5.659440 TTTCACTCCAACTTTTTCAGCTT 57.341 34.783 0.00 0.00 0.00 3.74
2785 3024 5.185828 ACTTTTCACTCCAACTTTTTCAGCT 59.814 36.000 0.00 0.00 0.00 4.24
2786 3025 5.410924 ACTTTTCACTCCAACTTTTTCAGC 58.589 37.500 0.00 0.00 0.00 4.26
2787 3026 7.985476 TCTACTTTTCACTCCAACTTTTTCAG 58.015 34.615 0.00 0.00 0.00 3.02
2788 3027 7.827236 TCTCTACTTTTCACTCCAACTTTTTCA 59.173 33.333 0.00 0.00 0.00 2.69
2789 3028 8.209917 TCTCTACTTTTCACTCCAACTTTTTC 57.790 34.615 0.00 0.00 0.00 2.29
2790 3029 8.624776 CATCTCTACTTTTCACTCCAACTTTTT 58.375 33.333 0.00 0.00 0.00 1.94
2791 3030 7.255277 GCATCTCTACTTTTCACTCCAACTTTT 60.255 37.037 0.00 0.00 0.00 2.27
2792 3031 6.205658 GCATCTCTACTTTTCACTCCAACTTT 59.794 38.462 0.00 0.00 0.00 2.66
2793 3032 5.703130 GCATCTCTACTTTTCACTCCAACTT 59.297 40.000 0.00 0.00 0.00 2.66
2794 3033 5.221722 TGCATCTCTACTTTTCACTCCAACT 60.222 40.000 0.00 0.00 0.00 3.16
2795 3034 4.997395 TGCATCTCTACTTTTCACTCCAAC 59.003 41.667 0.00 0.00 0.00 3.77
2796 3035 5.227569 TGCATCTCTACTTTTCACTCCAA 57.772 39.130 0.00 0.00 0.00 3.53
2797 3036 4.890158 TGCATCTCTACTTTTCACTCCA 57.110 40.909 0.00 0.00 0.00 3.86
2798 3037 5.181748 ACATGCATCTCTACTTTTCACTCC 58.818 41.667 0.00 0.00 0.00 3.85
2799 3038 8.973378 GTATACATGCATCTCTACTTTTCACTC 58.027 37.037 0.00 0.00 0.00 3.51
2800 3039 8.700051 AGTATACATGCATCTCTACTTTTCACT 58.300 33.333 5.50 0.00 0.00 3.41
2801 3040 8.879342 AGTATACATGCATCTCTACTTTTCAC 57.121 34.615 5.50 0.00 0.00 3.18
2807 3046 9.581289 AGACTTTAGTATACATGCATCTCTACT 57.419 33.333 5.50 6.53 0.00 2.57
2845 3084 4.340617 CCACTAGTGGGCCTCATTAAAAA 58.659 43.478 31.15 0.00 46.81 1.94
2846 3085 3.963129 CCACTAGTGGGCCTCATTAAAA 58.037 45.455 31.15 0.00 46.81 1.52
2847 3086 3.644966 CCACTAGTGGGCCTCATTAAA 57.355 47.619 31.15 0.00 46.81 1.52
2859 3098 2.679837 CCAATGCAAGCTACCACTAGTG 59.320 50.000 16.34 16.34 0.00 2.74
2860 3099 2.356125 CCCAATGCAAGCTACCACTAGT 60.356 50.000 0.00 0.00 0.00 2.57
2861 3100 2.292267 CCCAATGCAAGCTACCACTAG 58.708 52.381 0.00 0.00 0.00 2.57
2862 3101 1.064758 CCCCAATGCAAGCTACCACTA 60.065 52.381 0.00 0.00 0.00 2.74
2863 3102 0.323725 CCCCAATGCAAGCTACCACT 60.324 55.000 0.00 0.00 0.00 4.00
2864 3103 0.323360 TCCCCAATGCAAGCTACCAC 60.323 55.000 0.00 0.00 0.00 4.16
2865 3104 0.034186 CTCCCCAATGCAAGCTACCA 60.034 55.000 0.00 0.00 0.00 3.25
2866 3105 0.255890 TCTCCCCAATGCAAGCTACC 59.744 55.000 0.00 0.00 0.00 3.18
2867 3106 2.128771 TTCTCCCCAATGCAAGCTAC 57.871 50.000 0.00 0.00 0.00 3.58
2868 3107 2.897271 TTTCTCCCCAATGCAAGCTA 57.103 45.000 0.00 0.00 0.00 3.32
2869 3108 2.014010 TTTTCTCCCCAATGCAAGCT 57.986 45.000 0.00 0.00 0.00 3.74
2870 3109 2.837532 TTTTTCTCCCCAATGCAAGC 57.162 45.000 0.00 0.00 0.00 4.01
2915 3154 6.832900 TGGATACATATGCCTCATGACAAAAA 59.167 34.615 1.58 0.00 46.17 1.94
2916 3155 6.363882 TGGATACATATGCCTCATGACAAAA 58.636 36.000 1.58 0.00 46.17 2.44
2917 3156 5.939447 TGGATACATATGCCTCATGACAAA 58.061 37.500 1.58 0.00 46.17 2.83
2918 3157 5.565455 TGGATACATATGCCTCATGACAA 57.435 39.130 1.58 0.00 46.17 3.18
2933 3172 6.777782 TGTACAATGATGGCATATGGATACA 58.222 36.000 0.00 4.71 43.07 2.29
2934 3173 7.680350 GCATGTACAATGATGGCATATGGATAC 60.680 40.741 0.00 2.02 33.44 2.24
2935 3174 6.319405 GCATGTACAATGATGGCATATGGATA 59.681 38.462 0.00 0.00 33.44 2.59
2936 3175 5.126545 GCATGTACAATGATGGCATATGGAT 59.873 40.000 0.00 0.00 33.44 3.41
2937 3176 4.460034 GCATGTACAATGATGGCATATGGA 59.540 41.667 0.00 0.00 33.44 3.41
2938 3177 4.381185 GGCATGTACAATGATGGCATATGG 60.381 45.833 14.01 0.00 43.00 2.74
2939 3178 4.381185 GGGCATGTACAATGATGGCATATG 60.381 45.833 18.87 2.78 44.77 1.78
2940 3179 3.765511 GGGCATGTACAATGATGGCATAT 59.234 43.478 18.87 0.00 44.77 1.78
2941 3180 3.156293 GGGCATGTACAATGATGGCATA 58.844 45.455 18.87 0.00 44.77 3.14
2942 3181 1.965643 GGGCATGTACAATGATGGCAT 59.034 47.619 18.87 0.00 44.77 4.40
2943 3182 1.063792 AGGGCATGTACAATGATGGCA 60.064 47.619 18.87 0.00 44.77 4.92
2944 3183 1.696063 AGGGCATGTACAATGATGGC 58.304 50.000 11.25 11.25 42.82 4.40
2945 3184 3.569701 GGTAAGGGCATGTACAATGATGG 59.430 47.826 0.00 0.00 0.00 3.51
2946 3185 3.250762 CGGTAAGGGCATGTACAATGATG 59.749 47.826 0.00 0.00 0.00 3.07
2947 3186 3.476552 CGGTAAGGGCATGTACAATGAT 58.523 45.455 0.00 0.00 0.00 2.45
2948 3187 2.912771 CGGTAAGGGCATGTACAATGA 58.087 47.619 0.00 0.00 0.00 2.57
2949 3188 1.333619 GCGGTAAGGGCATGTACAATG 59.666 52.381 0.00 0.12 0.00 2.82
2950 3189 1.211949 AGCGGTAAGGGCATGTACAAT 59.788 47.619 0.00 0.00 0.00 2.71
2951 3190 0.616371 AGCGGTAAGGGCATGTACAA 59.384 50.000 0.00 0.00 0.00 2.41
2952 3191 1.487300 TAGCGGTAAGGGCATGTACA 58.513 50.000 0.00 0.00 0.00 2.90
2953 3192 2.833631 ATAGCGGTAAGGGCATGTAC 57.166 50.000 0.00 0.00 0.00 2.90
2954 3193 3.503365 ACTATAGCGGTAAGGGCATGTA 58.497 45.455 0.00 0.00 0.00 2.29
2955 3194 2.326428 ACTATAGCGGTAAGGGCATGT 58.674 47.619 0.00 0.00 0.00 3.21
2956 3195 4.530710 TTACTATAGCGGTAAGGGCATG 57.469 45.455 0.00 0.00 0.00 4.06
2957 3196 6.183360 CCATATTACTATAGCGGTAAGGGCAT 60.183 42.308 0.00 0.00 33.50 4.40
2958 3197 5.128171 CCATATTACTATAGCGGTAAGGGCA 59.872 44.000 0.00 0.00 33.50 5.36
2959 3198 5.128335 ACCATATTACTATAGCGGTAAGGGC 59.872 44.000 0.00 0.00 33.50 5.19
2960 3199 6.786967 ACCATATTACTATAGCGGTAAGGG 57.213 41.667 0.00 0.00 33.50 3.95
2961 3200 7.412853 CGTACCATATTACTATAGCGGTAAGG 58.587 42.308 0.00 0.00 33.41 2.69
2962 3201 7.066284 ACCGTACCATATTACTATAGCGGTAAG 59.934 40.741 10.69 8.85 45.38 2.34
3050 3289 2.373269 CGTCGTATTAAGAGGACGCAG 58.627 52.381 26.07 7.05 46.64 5.18
3051 3290 2.463553 CGTCGTATTAAGAGGACGCA 57.536 50.000 26.07 2.61 46.64 5.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.