Multiple sequence alignment - TraesCS1B01G202700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G202700 chr1B 100.000 5691 0 0 1 5691 364294860 364289170 0.000000e+00 10510.0
1 TraesCS1B01G202700 chr1B 91.071 504 37 3 5194 5691 600467815 600468316 0.000000e+00 675.0
2 TraesCS1B01G202700 chr1B 82.960 223 29 6 5466 5686 669710602 669710817 5.820000e-45 193.0
3 TraesCS1B01G202700 chr1B 96.471 85 3 0 4942 5026 600467740 600467824 2.140000e-29 141.0
4 TraesCS1B01G202700 chr1D 90.619 1567 91 34 58 1593 250215119 250216660 0.000000e+00 2028.0
5 TraesCS1B01G202700 chr1D 91.687 1227 47 19 3735 4914 250219182 250220400 0.000000e+00 1650.0
6 TraesCS1B01G202700 chr1D 95.082 244 12 0 3264 3507 250218800 250219043 8.940000e-103 385.0
7 TraesCS1B01G202700 chr1D 93.478 138 9 0 3549 3686 250219038 250219175 7.470000e-49 206.0
8 TraesCS1B01G202700 chr1A 87.412 1557 84 48 3424 4917 320336909 320338416 0.000000e+00 1687.0
9 TraesCS1B01G202700 chr1A 87.991 1349 87 39 58 1375 320333683 320334987 0.000000e+00 1524.0
10 TraesCS1B01G202700 chr1A 91.753 776 46 11 1723 2482 320335359 320336132 0.000000e+00 1062.0
11 TraesCS1B01G202700 chr1A 88.341 446 43 7 2992 3432 320336316 320336757 1.400000e-145 527.0
12 TraesCS1B01G202700 chr1A 94.318 176 3 4 5027 5195 543641304 543641479 4.370000e-66 263.0
13 TraesCS1B01G202700 chr1A 83.556 225 32 5 5466 5686 319444113 319444336 7.470000e-49 206.0
14 TraesCS1B01G202700 chr1A 94.340 106 6 0 1582 1687 320335091 320335196 4.560000e-36 163.0
15 TraesCS1B01G202700 chr1A 97.143 70 1 1 2899 2968 320336155 320336223 3.600000e-22 117.0
16 TraesCS1B01G202700 chr1A 95.161 62 2 1 1673 1734 320335282 320335342 4.690000e-16 97.1
17 TraesCS1B01G202700 chr1A 86.567 67 1 5 1422 1480 320334985 320335051 3.680000e-07 67.6
18 TraesCS1B01G202700 chr1A 96.970 33 1 0 3131 3163 91415237 91415205 7.970000e-04 56.5
19 TraesCS1B01G202700 chr3A 91.434 502 34 3 5194 5686 594814201 594813700 0.000000e+00 680.0
20 TraesCS1B01G202700 chr3A 92.090 177 6 4 5027 5195 703639846 703640022 5.700000e-60 243.0
21 TraesCS1B01G202700 chr3A 90.503 179 9 4 5026 5196 695402602 695402780 4.440000e-56 230.0
22 TraesCS1B01G202700 chr3A 94.118 85 5 0 4942 5026 594814276 594814192 4.630000e-26 130.0
23 TraesCS1B01G202700 chr2A 88.561 542 39 9 3450 3978 626859 627390 2.240000e-178 636.0
24 TraesCS1B01G202700 chr2A 92.614 176 13 0 4447 4622 627386 627561 2.630000e-63 254.0
25 TraesCS1B01G202700 chr2A 87.571 177 13 4 5027 5194 510886374 510886198 4.500000e-46 196.0
26 TraesCS1B01G202700 chr2A 83.491 212 27 4 5478 5686 445370592 445370386 2.090000e-44 191.0
27 TraesCS1B01G202700 chr2A 83.412 211 27 8 5479 5683 320186563 320186771 7.530000e-44 189.0
28 TraesCS1B01G202700 chr2A 92.208 77 4 2 3264 3339 626558 626633 2.170000e-19 108.0
29 TraesCS1B01G202700 chr2A 100.000 42 0 0 1110 1151 626107 626148 1.700000e-10 78.7
30 TraesCS1B01G202700 chr6A 94.350 177 3 4 5027 5196 203521178 203521354 1.220000e-66 265.0
31 TraesCS1B01G202700 chr6A 90.449 178 8 4 5027 5195 277941568 277941745 5.740000e-55 226.0
32 TraesCS1B01G202700 chr6A 89.286 84 9 0 3127 3210 594439786 594439869 7.800000e-19 106.0
33 TraesCS1B01G202700 chr7B 94.318 176 3 4 5027 5195 750337622 750337447 4.370000e-66 263.0
34 TraesCS1B01G202700 chr2B 91.534 189 6 7 5019 5200 236849440 236849255 9.470000e-63 252.0
35 TraesCS1B01G202700 chr3B 89.944 179 8 6 5027 5195 779532942 779533120 7.420000e-54 222.0
36 TraesCS1B01G202700 chr3B 90.789 76 3 4 4949 5023 397320267 397320339 1.300000e-16 99.0
37 TraesCS1B01G202700 chr5D 86.387 191 22 3 5499 5686 561694741 561694930 7.470000e-49 206.0
38 TraesCS1B01G202700 chr5D 81.538 130 18 6 3139 3265 509672639 509672513 1.010000e-17 102.0
39 TraesCS1B01G202700 chr2D 83.732 209 26 6 5479 5686 26493823 26493622 2.090000e-44 191.0
40 TraesCS1B01G202700 chr2D 78.947 152 26 6 3117 3265 453606763 453606911 1.300000e-16 99.0
41 TraesCS1B01G202700 chr7D 83.412 211 27 6 5478 5685 100661074 100660869 7.530000e-44 189.0
42 TraesCS1B01G202700 chr7D 87.838 74 9 0 3137 3210 577589350 577589423 2.820000e-13 87.9
43 TraesCS1B01G202700 chr7D 95.745 47 1 1 2992 3037 104370056 104370102 2.200000e-09 75.0
44 TraesCS1B01G202700 chr3D 97.938 97 1 1 3845 3940 588792899 588792803 3.530000e-37 167.0
45 TraesCS1B01G202700 chr5B 89.873 79 4 4 4949 5026 580178371 580178446 1.300000e-16 99.0
46 TraesCS1B01G202700 chr4A 92.982 57 4 0 3129 3185 575806729 575806673 3.650000e-12 84.2
47 TraesCS1B01G202700 chr4D 87.692 65 5 3 4963 5025 231230823 231230886 7.910000e-09 73.1
48 TraesCS1B01G202700 chr7A 93.478 46 2 1 2992 3036 116626104 116626149 3.680000e-07 67.6
49 TraesCS1B01G202700 chr6D 100.000 28 0 0 3127 3154 447846419 447846446 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G202700 chr1B 364289170 364294860 5690 True 10510.0000 10510 100.00000 1 5691 1 chr1B.!!$R1 5690
1 TraesCS1B01G202700 chr1B 600467740 600468316 576 False 408.0000 675 93.77100 4942 5691 2 chr1B.!!$F2 749
2 TraesCS1B01G202700 chr1D 250215119 250220400 5281 False 1067.2500 2028 92.71650 58 4914 4 chr1D.!!$F1 4856
3 TraesCS1B01G202700 chr1A 320333683 320338416 4733 False 655.5875 1687 91.08850 58 4917 8 chr1A.!!$F3 4859
4 TraesCS1B01G202700 chr3A 594813700 594814276 576 True 405.0000 680 92.77600 4942 5686 2 chr3A.!!$R1 744
5 TraesCS1B01G202700 chr2A 626107 627561 1454 False 269.1750 636 93.34575 1110 4622 4 chr2A.!!$F2 3512

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
178 184 0.103208 GATGACGCGATCTCAACCCT 59.897 55.0 15.93 0.00 0.00 4.34 F
1006 1035 0.322975 GCAGAGTGGTGTGATGGAGT 59.677 55.0 0.00 0.00 0.00 3.85 F
1495 1669 0.449786 CACACGGAGCACAAAACACA 59.550 50.0 0.00 0.00 0.00 3.72 F
1527 1701 0.624785 ACGTAGGGTCCTGCTAGAGT 59.375 55.0 0.00 0.00 0.00 3.24 F
1530 1704 0.631753 TAGGGTCCTGCTAGAGTGCT 59.368 55.0 0.00 0.00 0.00 4.40 F
1531 1705 0.631753 AGGGTCCTGCTAGAGTGCTA 59.368 55.0 0.00 0.00 0.00 3.49 F
1617 1791 0.961019 GGCAGATCAGGTGCACAAAA 59.039 50.0 20.43 2.68 43.12 2.44 F
3770 5052 0.457035 TTGTCGGACGTACATAGGCC 59.543 55.0 0.00 0.00 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1481 1655 0.031178 CTGGCTGTGTTTTGTGCTCC 59.969 55.000 0.00 0.00 0.00 4.70 R
2788 3456 0.252193 TTGGCCAGCTTAATTGCCCT 60.252 50.000 5.11 0.00 43.35 5.19 R
2789 3457 0.612744 TTTGGCCAGCTTAATTGCCC 59.387 50.000 5.11 0.00 43.35 5.36 R
3425 4514 0.984230 AGGGAAGCAACCATTCTCGA 59.016 50.000 1.88 0.00 32.16 4.04 R
3614 4873 3.333029 TCAGCGGTCTTGATCATCAAA 57.667 42.857 0.75 0.00 35.73 2.69 R
3693 4952 8.548880 TTTTCCTAGCACTAGTACCATATTCT 57.451 34.615 0.00 0.00 0.00 2.40 R
3772 5054 0.107703 GATTCGTGGGTCATGGCTCA 60.108 55.000 0.00 0.00 0.00 4.26 R
5271 6630 0.029163 TAGGAGGATGGGCCATTGGA 60.029 55.000 22.20 0.38 40.02 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.111375 GATGGCTCGAGAAACTTAGTGA 57.889 45.455 18.75 0.00 0.00 3.41
22 23 4.495422 GATGGCTCGAGAAACTTAGTGAA 58.505 43.478 18.75 0.00 0.00 3.18
23 24 3.914312 TGGCTCGAGAAACTTAGTGAAG 58.086 45.455 18.75 0.00 38.76 3.02
24 25 3.572682 TGGCTCGAGAAACTTAGTGAAGA 59.427 43.478 18.75 0.00 36.45 2.87
25 26 4.220821 TGGCTCGAGAAACTTAGTGAAGAT 59.779 41.667 18.75 0.00 36.45 2.40
26 27 4.564769 GGCTCGAGAAACTTAGTGAAGATG 59.435 45.833 18.75 0.00 36.45 2.90
27 28 5.164954 GCTCGAGAAACTTAGTGAAGATGT 58.835 41.667 18.75 0.00 36.45 3.06
28 29 5.635700 GCTCGAGAAACTTAGTGAAGATGTT 59.364 40.000 18.75 0.00 36.45 2.71
29 30 6.183360 GCTCGAGAAACTTAGTGAAGATGTTC 60.183 42.308 18.75 0.00 36.45 3.18
30 31 6.982852 TCGAGAAACTTAGTGAAGATGTTCT 58.017 36.000 4.03 0.00 35.97 3.01
31 32 7.085116 TCGAGAAACTTAGTGAAGATGTTCTC 58.915 38.462 4.03 9.44 40.48 2.87
32 33 7.040340 TCGAGAAACTTAGTGAAGATGTTCTCT 60.040 37.037 11.38 11.38 40.96 3.10
43 44 4.363991 AGATGTTCTCTTCAGTTTGGCT 57.636 40.909 0.00 0.00 0.00 4.75
44 45 4.723309 AGATGTTCTCTTCAGTTTGGCTT 58.277 39.130 0.00 0.00 0.00 4.35
45 46 5.136105 AGATGTTCTCTTCAGTTTGGCTTT 58.864 37.500 0.00 0.00 0.00 3.51
46 47 6.299141 AGATGTTCTCTTCAGTTTGGCTTTA 58.701 36.000 0.00 0.00 0.00 1.85
47 48 6.944862 AGATGTTCTCTTCAGTTTGGCTTTAT 59.055 34.615 0.00 0.00 0.00 1.40
48 49 6.560253 TGTTCTCTTCAGTTTGGCTTTATC 57.440 37.500 0.00 0.00 0.00 1.75
49 50 6.299141 TGTTCTCTTCAGTTTGGCTTTATCT 58.701 36.000 0.00 0.00 0.00 1.98
50 51 6.428159 TGTTCTCTTCAGTTTGGCTTTATCTC 59.572 38.462 0.00 0.00 0.00 2.75
51 52 5.171476 TCTCTTCAGTTTGGCTTTATCTCG 58.829 41.667 0.00 0.00 0.00 4.04
52 53 4.894784 TCTTCAGTTTGGCTTTATCTCGT 58.105 39.130 0.00 0.00 0.00 4.18
53 54 5.305585 TCTTCAGTTTGGCTTTATCTCGTT 58.694 37.500 0.00 0.00 0.00 3.85
54 55 5.408604 TCTTCAGTTTGGCTTTATCTCGTTC 59.591 40.000 0.00 0.00 0.00 3.95
55 56 4.637276 TCAGTTTGGCTTTATCTCGTTCA 58.363 39.130 0.00 0.00 0.00 3.18
56 57 5.060506 TCAGTTTGGCTTTATCTCGTTCAA 58.939 37.500 0.00 0.00 0.00 2.69
71 72 8.954950 ATCTCGTTCAAAGTTATCTGATGAAT 57.045 30.769 0.00 0.00 34.88 2.57
85 88 2.125106 GAATCGCCCGCTCCACTT 60.125 61.111 0.00 0.00 0.00 3.16
110 116 5.576384 CACTGCTTGTTTGCTTGTCTTAAAA 59.424 36.000 0.00 0.00 0.00 1.52
111 117 5.576774 ACTGCTTGTTTGCTTGTCTTAAAAC 59.423 36.000 0.00 0.00 33.98 2.43
112 118 5.719173 TGCTTGTTTGCTTGTCTTAAAACT 58.281 33.333 0.00 0.00 34.39 2.66
114 120 7.316640 TGCTTGTTTGCTTGTCTTAAAACTAA 58.683 30.769 0.00 0.00 34.39 2.24
115 121 7.978975 TGCTTGTTTGCTTGTCTTAAAACTAAT 59.021 29.630 0.00 0.00 34.39 1.73
116 122 8.268738 GCTTGTTTGCTTGTCTTAAAACTAATG 58.731 33.333 0.00 0.00 34.39 1.90
117 123 7.692908 TGTTTGCTTGTCTTAAAACTAATGC 57.307 32.000 0.00 0.00 34.39 3.56
118 124 7.488322 TGTTTGCTTGTCTTAAAACTAATGCT 58.512 30.769 0.00 0.00 34.39 3.79
119 125 8.625651 TGTTTGCTTGTCTTAAAACTAATGCTA 58.374 29.630 0.00 0.00 34.39 3.49
120 126 9.118236 GTTTGCTTGTCTTAAAACTAATGCTAG 57.882 33.333 0.00 0.00 31.37 3.42
121 127 7.979444 TGCTTGTCTTAAAACTAATGCTAGT 57.021 32.000 0.00 0.00 40.25 2.57
122 128 9.496873 TTGCTTGTCTTAAAACTAATGCTAGTA 57.503 29.630 0.00 0.00 37.39 1.82
123 129 8.932791 TGCTTGTCTTAAAACTAATGCTAGTAC 58.067 33.333 0.00 0.00 37.39 2.73
124 130 8.108782 GCTTGTCTTAAAACTAATGCTAGTACG 58.891 37.037 0.00 0.00 37.39 3.67
156 162 8.044309 TCATCACTCGTTTAATTCAGGGATTTA 58.956 33.333 0.00 0.00 25.62 1.40
157 163 7.605410 TCACTCGTTTAATTCAGGGATTTAC 57.395 36.000 0.00 0.00 0.00 2.01
173 179 3.775661 TTTACTGATGACGCGATCTCA 57.224 42.857 15.93 6.76 0.00 3.27
175 181 1.914634 ACTGATGACGCGATCTCAAC 58.085 50.000 15.93 5.74 0.00 3.18
178 184 0.103208 GATGACGCGATCTCAACCCT 59.897 55.000 15.93 0.00 0.00 4.34
292 298 2.125391 TCGCCTCATGTGCTCTGC 60.125 61.111 8.05 0.00 0.00 4.26
319 325 6.887545 ACTTCGGCTATATAGATAGACAGCTT 59.112 38.462 14.16 0.00 43.16 3.74
347 353 0.995675 CCCACTCCATCCCTCCCATT 60.996 60.000 0.00 0.00 0.00 3.16
404 410 1.331214 CACCACCTGCATTTCCACTT 58.669 50.000 0.00 0.00 0.00 3.16
468 474 1.205893 CTGCTCCAACCCTAGAGTGAC 59.794 57.143 0.00 0.00 32.47 3.67
471 477 0.613853 TCCAACCCTAGAGTGACCGG 60.614 60.000 0.00 0.00 0.00 5.28
476 482 0.752376 CCCTAGAGTGACCGGTCCTC 60.752 65.000 30.52 30.52 0.00 3.71
512 522 2.710902 GGCACCATTTCCCTTCCGC 61.711 63.158 0.00 0.00 0.00 5.54
587 605 0.541863 ATCGACCCAGATCCAACCAC 59.458 55.000 0.00 0.00 0.00 4.16
636 662 5.197451 TCCTAGTTTCAAAAGGTTGCAGAA 58.803 37.500 0.00 0.00 34.50 3.02
637 663 5.654650 TCCTAGTTTCAAAAGGTTGCAGAAA 59.345 36.000 0.00 0.00 34.50 2.52
638 664 6.153680 TCCTAGTTTCAAAAGGTTGCAGAAAA 59.846 34.615 0.00 0.00 34.50 2.29
639 665 6.986231 CCTAGTTTCAAAAGGTTGCAGAAAAT 59.014 34.615 1.81 1.81 34.50 1.82
640 666 6.908870 AGTTTCAAAAGGTTGCAGAAAATC 57.091 33.333 0.00 0.00 34.50 2.17
641 667 6.643388 AGTTTCAAAAGGTTGCAGAAAATCT 58.357 32.000 0.00 0.00 34.50 2.40
642 668 7.781056 AGTTTCAAAAGGTTGCAGAAAATCTA 58.219 30.769 0.00 0.00 34.50 1.98
742 768 2.964978 GCCGTCTTTGCTTGCCAT 59.035 55.556 0.00 0.00 0.00 4.40
744 770 1.135315 CCGTCTTTGCTTGCCATCG 59.865 57.895 0.00 0.00 0.00 3.84
747 773 1.442769 GTCTTTGCTTGCCATCGAGA 58.557 50.000 0.00 0.00 0.00 4.04
870 896 2.813908 GCCGTAGCACCACCTTCG 60.814 66.667 0.00 0.00 39.53 3.79
871 897 2.813908 CCGTAGCACCACCTTCGC 60.814 66.667 0.00 0.00 0.00 4.70
872 898 2.048597 CGTAGCACCACCTTCGCA 60.049 61.111 0.00 0.00 0.00 5.10
914 942 3.385111 AGTTAGTGAGCCTCCTATTTCCG 59.615 47.826 0.00 0.00 0.00 4.30
925 953 1.003812 CCTATTTCCGTTCCACCACCA 59.996 52.381 0.00 0.00 0.00 4.17
977 1006 0.539518 GGGAGAAGAGAGAGTTGGCC 59.460 60.000 0.00 0.00 0.00 5.36
1006 1035 0.322975 GCAGAGTGGTGTGATGGAGT 59.677 55.000 0.00 0.00 0.00 3.85
1159 1194 1.447838 GTGGATGCGTGGATGTCGT 60.448 57.895 0.00 0.00 0.00 4.34
1280 1321 2.242926 CCATATTCGGCCTCTCTCTCA 58.757 52.381 0.00 0.00 0.00 3.27
1281 1322 2.230992 CCATATTCGGCCTCTCTCTCAG 59.769 54.545 0.00 0.00 0.00 3.35
1283 1324 2.738587 ATTCGGCCTCTCTCTCAGTA 57.261 50.000 0.00 0.00 0.00 2.74
1286 1327 0.871722 CGGCCTCTCTCTCAGTATCG 59.128 60.000 0.00 0.00 0.00 2.92
1403 1564 7.880195 CCGTATCTGGAAATGGATTTATCTTCT 59.120 37.037 0.00 0.00 0.00 2.85
1410 1571 7.613801 TGGAAATGGATTTATCTTCTTTTCCGA 59.386 33.333 14.44 7.40 0.00 4.55
1419 1580 2.616842 TCTTCTTTTCCGAAACTGTGCC 59.383 45.455 0.00 0.00 0.00 5.01
1480 1654 3.577667 ACAATGTTATGCATGCACACAC 58.422 40.909 28.31 22.04 37.96 3.82
1481 1655 2.547913 ATGTTATGCATGCACACACG 57.452 45.000 28.31 0.00 36.26 4.49
1484 1658 1.085893 TTATGCATGCACACACGGAG 58.914 50.000 25.37 0.00 0.00 4.63
1485 1659 1.368345 TATGCATGCACACACGGAGC 61.368 55.000 25.37 0.00 0.00 4.70
1495 1669 0.449786 CACACGGAGCACAAAACACA 59.550 50.000 0.00 0.00 0.00 3.72
1513 1687 2.476619 CACAGCCAGTTTCAGAACGTAG 59.523 50.000 0.00 0.00 40.75 3.51
1516 1690 1.270678 GCCAGTTTCAGAACGTAGGGT 60.271 52.381 0.00 0.00 40.75 4.34
1523 1697 1.005097 TCAGAACGTAGGGTCCTGCTA 59.995 52.381 0.00 0.00 0.00 3.49
1524 1698 1.405821 CAGAACGTAGGGTCCTGCTAG 59.594 57.143 0.00 0.00 0.00 3.42
1526 1700 1.677052 GAACGTAGGGTCCTGCTAGAG 59.323 57.143 0.00 0.00 0.00 2.43
1527 1701 0.624785 ACGTAGGGTCCTGCTAGAGT 59.375 55.000 0.00 0.00 0.00 3.24
1528 1702 1.025812 CGTAGGGTCCTGCTAGAGTG 58.974 60.000 0.00 0.00 0.00 3.51
1530 1704 0.631753 TAGGGTCCTGCTAGAGTGCT 59.368 55.000 0.00 0.00 0.00 4.40
1531 1705 0.631753 AGGGTCCTGCTAGAGTGCTA 59.368 55.000 0.00 0.00 0.00 3.49
1597 1771 2.202743 GCAGCCATGACTCGCGTA 60.203 61.111 5.77 0.00 0.00 4.42
1598 1772 2.233654 GCAGCCATGACTCGCGTAG 61.234 63.158 5.77 4.90 0.00 3.51
1617 1791 0.961019 GGCAGATCAGGTGCACAAAA 59.039 50.000 20.43 2.68 43.12 2.44
1793 2313 3.506810 CTCTAGTGAACTCGAGGCAAAG 58.493 50.000 18.41 14.08 33.59 2.77
1967 2501 7.582719 ACCTTTAATATCACCATGCTCCTTTA 58.417 34.615 0.00 0.00 0.00 1.85
2005 2542 8.537728 TGGGAACATGCTTCTATATCATTTTT 57.462 30.769 0.00 0.00 33.40 1.94
2135 2673 8.941977 ACTTCACAATTTTTGGTAAAAAGAACC 58.058 29.630 5.79 0.00 42.97 3.62
2179 2717 7.801104 TGATAAGTGGCATTATACTTTGGAGA 58.199 34.615 0.00 0.00 38.11 3.71
2217 2758 7.013369 CACTCCCTCCATTACTTTTTATAAGGC 59.987 40.741 0.00 0.00 0.00 4.35
2302 2848 7.883391 ATCGAGTCGGTATTATTAGATCCAT 57.117 36.000 13.54 0.00 0.00 3.41
2303 2849 7.317842 TCGAGTCGGTATTATTAGATCCATC 57.682 40.000 13.54 0.00 0.00 3.51
2304 2850 6.036844 TCGAGTCGGTATTATTAGATCCATCG 59.963 42.308 13.54 0.00 0.00 3.84
2305 2851 6.452494 AGTCGGTATTATTAGATCCATCGG 57.548 41.667 0.00 0.00 0.00 4.18
2306 2852 5.360144 AGTCGGTATTATTAGATCCATCGGG 59.640 44.000 0.00 0.00 0.00 5.14
2350 2905 5.869753 ACTATTGCAGTCATTGACAGTTC 57.130 39.130 18.57 5.37 34.60 3.01
2417 2975 9.361315 CAAAATAAACTTATAAAAAGGGACGGG 57.639 33.333 0.00 0.00 0.00 5.28
2463 3021 8.908786 ATGCAATAAGTTTGCTAGCTCTATAA 57.091 30.769 17.23 0.00 45.13 0.98
2475 3033 8.040716 TGCTAGCTCTATAAAAACCTTTGAAC 57.959 34.615 17.23 0.00 0.00 3.18
2482 3040 8.245195 TCTATAAAAACCTTTGAACTTGGCTT 57.755 30.769 0.00 0.00 0.00 4.35
2483 3041 9.357161 TCTATAAAAACCTTTGAACTTGGCTTA 57.643 29.630 0.00 0.00 0.00 3.09
2499 3057 2.357952 GGCTTATCCGTTGTTTCCATCC 59.642 50.000 0.00 0.00 0.00 3.51
2503 3061 2.649531 TCCGTTGTTTCCATCCAACT 57.350 45.000 0.00 0.00 38.99 3.16
2505 3063 1.539827 CCGTTGTTTCCATCCAACTCC 59.460 52.381 0.00 0.00 38.99 3.85
2506 3064 2.504367 CGTTGTTTCCATCCAACTCCT 58.496 47.619 0.00 0.00 38.99 3.69
2509 3067 2.238521 TGTTTCCATCCAACTCCTTGC 58.761 47.619 0.00 0.00 0.00 4.01
2511 3069 1.909700 TTCCATCCAACTCCTTGCAC 58.090 50.000 0.00 0.00 0.00 4.57
2531 3090 7.283625 TGCACAACCTTGAACTAAATATGTT 57.716 32.000 0.00 0.00 0.00 2.71
2532 3091 7.144661 TGCACAACCTTGAACTAAATATGTTG 58.855 34.615 0.00 0.00 38.18 3.33
2533 3092 6.089417 GCACAACCTTGAACTAAATATGTTGC 59.911 38.462 0.00 0.00 36.26 4.17
2534 3093 7.144661 CACAACCTTGAACTAAATATGTTGCA 58.855 34.615 0.00 0.00 36.26 4.08
2537 3096 9.853555 CAACCTTGAACTAAATATGTTGCAATA 57.146 29.630 0.59 0.00 0.00 1.90
2573 3132 8.567948 TGGTCAAGAAATTTCATCTAAAGTGTC 58.432 33.333 19.99 3.47 0.00 3.67
2611 3170 9.520204 AAAATGTTGCAGATAAATATAGTGTGC 57.480 29.630 0.00 0.00 0.00 4.57
2614 3173 8.593492 TGTTGCAGATAAATATAGTGTGCTAG 57.407 34.615 0.00 0.00 0.00 3.42
2627 3186 5.939764 AGTGTGCTAGAATATCACCAAGA 57.060 39.130 0.00 0.00 36.91 3.02
2629 3188 6.286758 AGTGTGCTAGAATATCACCAAGATG 58.713 40.000 0.00 0.00 36.91 2.90
2631 3190 6.933521 GTGTGCTAGAATATCACCAAGATGAT 59.066 38.462 0.00 0.00 36.91 2.45
2632 3191 7.117523 GTGTGCTAGAATATCACCAAGATGATC 59.882 40.741 0.00 0.00 36.91 2.92
2636 3304 9.364989 GCTAGAATATCACCAAGATGATCTAAC 57.635 37.037 0.00 0.00 39.97 2.34
2641 3309 5.661056 TCACCAAGATGATCTAACGAGTT 57.339 39.130 0.00 0.00 0.00 3.01
2642 3310 6.037786 TCACCAAGATGATCTAACGAGTTT 57.962 37.500 0.00 0.00 0.00 2.66
2645 3313 5.869888 ACCAAGATGATCTAACGAGTTTGTC 59.130 40.000 0.00 0.00 0.00 3.18
2652 3320 9.302345 GATGATCTAACGAGTTTGTCTGAAATA 57.698 33.333 0.00 0.00 0.00 1.40
2654 3322 8.922676 TGATCTAACGAGTTTGTCTGAAATAAC 58.077 33.333 0.00 0.00 0.00 1.89
2657 3325 4.374399 ACGAGTTTGTCTGAAATAACGGT 58.626 39.130 0.00 0.00 0.00 4.83
2659 3327 5.050567 ACGAGTTTGTCTGAAATAACGGTTC 60.051 40.000 0.00 0.00 0.00 3.62
2661 3329 6.510478 CGAGTTTGTCTGAAATAACGGTTCAA 60.510 38.462 0.00 0.00 34.68 2.69
2662 3330 7.090953 AGTTTGTCTGAAATAACGGTTCAAA 57.909 32.000 0.00 0.00 34.68 2.69
2663 3331 7.540299 AGTTTGTCTGAAATAACGGTTCAAAA 58.460 30.769 0.00 0.00 34.68 2.44
2668 3336 9.026074 TGTCTGAAATAACGGTTCAAAATTTTC 57.974 29.630 0.00 0.60 34.68 2.29
2674 3342 9.497030 AAATAACGGTTCAAAATTTTCAAAAGC 57.503 25.926 0.00 5.15 0.00 3.51
2676 3344 3.959385 CGGTTCAAAATTTTCAAAAGCGC 59.041 39.130 19.79 0.00 32.10 5.92
2680 3348 5.553692 TCAAAATTTTCAAAAGCGCGTAG 57.446 34.783 8.43 0.00 0.00 3.51
2701 3369 7.241376 CGTAGCGAATAGTTTTGGAAAATTCT 58.759 34.615 0.00 0.00 0.00 2.40
2702 3370 7.216317 CGTAGCGAATAGTTTTGGAAAATTCTG 59.784 37.037 0.00 0.00 0.00 3.02
2708 3376 8.970691 AATAGTTTTGGAAAATTCTGATGACG 57.029 30.769 0.00 0.00 0.00 4.35
2713 3381 3.431912 TGGAAAATTCTGATGACGTCGTG 59.568 43.478 16.54 1.43 0.00 4.35
2733 3401 5.353956 TCGTGAATCCAACATACTCCATTTG 59.646 40.000 0.00 0.00 0.00 2.32
2740 3408 7.681939 TCCAACATACTCCATTTGTTAGTTC 57.318 36.000 0.00 0.00 32.57 3.01
2742 3410 7.942341 TCCAACATACTCCATTTGTTAGTTCTT 59.058 33.333 0.00 0.00 32.57 2.52
2781 3449 6.650390 GGTTTGTCAGGAAAATACAATGCATT 59.350 34.615 5.99 5.99 33.44 3.56
2783 3451 6.839124 TGTCAGGAAAATACAATGCATTCT 57.161 33.333 9.53 0.00 0.00 2.40
2787 3455 7.062605 GTCAGGAAAATACAATGCATTCTGTTG 59.937 37.037 9.53 1.72 0.00 3.33
2788 3456 7.039853 TCAGGAAAATACAATGCATTCTGTTGA 60.040 33.333 9.53 2.64 0.00 3.18
2789 3457 7.274904 CAGGAAAATACAATGCATTCTGTTGAG 59.725 37.037 9.53 0.00 0.00 3.02
2790 3458 6.532657 GGAAAATACAATGCATTCTGTTGAGG 59.467 38.462 9.53 0.00 0.00 3.86
2791 3459 5.587388 AATACAATGCATTCTGTTGAGGG 57.413 39.130 9.53 0.00 0.00 4.30
2792 3460 1.547372 ACAATGCATTCTGTTGAGGGC 59.453 47.619 9.53 0.00 0.00 5.19
2794 3462 1.927487 ATGCATTCTGTTGAGGGCAA 58.073 45.000 0.00 0.00 36.91 4.52
2795 3463 1.927487 TGCATTCTGTTGAGGGCAAT 58.073 45.000 0.00 0.00 36.22 3.56
2796 3464 2.250031 TGCATTCTGTTGAGGGCAATT 58.750 42.857 0.00 0.00 36.22 2.32
2798 3466 3.831333 TGCATTCTGTTGAGGGCAATTAA 59.169 39.130 0.00 0.00 36.22 1.40
2799 3467 4.082081 TGCATTCTGTTGAGGGCAATTAAG 60.082 41.667 0.00 0.00 36.22 1.85
2812 3666 3.132824 GGCAATTAAGCTGGCCAAATACT 59.867 43.478 7.01 0.00 45.70 2.12
2817 3671 7.319646 CAATTAAGCTGGCCAAATACTGTTTA 58.680 34.615 7.01 0.00 0.00 2.01
2818 3672 6.902771 TTAAGCTGGCCAAATACTGTTTAA 57.097 33.333 7.01 6.13 0.00 1.52
2820 3674 6.358974 AAGCTGGCCAAATACTGTTTAAAT 57.641 33.333 7.01 0.00 0.00 1.40
2822 3676 7.475137 AGCTGGCCAAATACTGTTTAAATAA 57.525 32.000 7.01 0.00 0.00 1.40
2824 3678 7.817478 AGCTGGCCAAATACTGTTTAAATAAAC 59.183 33.333 7.01 8.72 44.32 2.01
2826 3680 9.705290 CTGGCCAAATACTGTTTAAATAAACTT 57.295 29.630 7.01 6.74 44.36 2.66
2934 3788 3.373439 GTGGACTTGCTATTTCTCTGCTG 59.627 47.826 0.00 0.00 0.00 4.41
2977 3885 1.952296 GCCTAACATGGGCTGATTCTG 59.048 52.381 4.37 0.00 45.57 3.02
2983 3891 2.158652 ACATGGGCTGATTCTGAGATGG 60.159 50.000 0.00 0.00 0.00 3.51
3087 4039 2.684374 TCCATCAACATGCATGCACTAC 59.316 45.455 25.37 0.00 0.00 2.73
3153 4107 1.832883 TGTTCGGGATTTGACCATGG 58.167 50.000 11.19 11.19 0.00 3.66
3164 4118 2.721274 TGACCATGGCAAATCAAACG 57.279 45.000 13.04 0.00 0.00 3.60
3197 4151 9.699410 ATGACAATTTTATTAACAGGAGGATGA 57.301 29.630 0.00 0.00 0.00 2.92
3210 4165 5.071788 ACAGGAGGATGACAAGTTTAGTTGA 59.928 40.000 4.40 0.00 0.00 3.18
3213 4168 5.940470 GGAGGATGACAAGTTTAGTTGACAT 59.060 40.000 12.73 12.73 42.81 3.06
3216 4171 4.829064 TGACAAGTTTAGTTGACATGCC 57.171 40.909 4.40 0.00 29.04 4.40
3217 4172 4.460263 TGACAAGTTTAGTTGACATGCCT 58.540 39.130 4.40 0.00 29.04 4.75
3218 4173 4.887071 TGACAAGTTTAGTTGACATGCCTT 59.113 37.500 4.40 0.00 29.04 4.35
3219 4174 5.186996 ACAAGTTTAGTTGACATGCCTTG 57.813 39.130 4.40 0.00 35.40 3.61
3230 4185 1.342174 ACATGCCTTGCAACTTTCTGG 59.658 47.619 0.00 0.00 43.62 3.86
3235 4190 3.055530 TGCCTTGCAACTTTCTGGAAAAA 60.056 39.130 0.00 0.00 34.76 1.94
3365 4454 3.056821 TGGACGTGACATAAGAGGACAAG 60.057 47.826 0.00 0.00 0.00 3.16
3410 4499 4.180057 CTCAATATATCGCCTCAGCCTTC 58.820 47.826 0.00 0.00 34.57 3.46
3487 4736 1.135915 ACATGTCCGATCTGACTCTGC 59.864 52.381 16.89 0.00 36.21 4.26
3568 4827 1.385528 AAAATCCAACGGGGTATCGC 58.614 50.000 0.00 0.00 38.11 4.58
3754 5036 3.860641 CTGGGCTTTGTTTGTTCTTTGT 58.139 40.909 0.00 0.00 0.00 2.83
3755 5037 3.855858 TGGGCTTTGTTTGTTCTTTGTC 58.144 40.909 0.00 0.00 0.00 3.18
3756 5038 2.857748 GGGCTTTGTTTGTTCTTTGTCG 59.142 45.455 0.00 0.00 0.00 4.35
3757 5039 2.857748 GGCTTTGTTTGTTCTTTGTCGG 59.142 45.455 0.00 0.00 0.00 4.79
3758 5040 3.428316 GGCTTTGTTTGTTCTTTGTCGGA 60.428 43.478 0.00 0.00 0.00 4.55
3759 5041 3.546271 GCTTTGTTTGTTCTTTGTCGGAC 59.454 43.478 0.00 0.00 0.00 4.79
3760 5042 3.392769 TTGTTTGTTCTTTGTCGGACG 57.607 42.857 3.34 0.00 0.00 4.79
3761 5043 2.348660 TGTTTGTTCTTTGTCGGACGT 58.651 42.857 3.34 0.00 0.00 4.34
3762 5044 3.519579 TGTTTGTTCTTTGTCGGACGTA 58.480 40.909 3.34 0.00 0.00 3.57
3763 5045 3.306703 TGTTTGTTCTTTGTCGGACGTAC 59.693 43.478 3.34 0.00 0.00 3.67
3764 5046 2.867287 TGTTCTTTGTCGGACGTACA 57.133 45.000 0.00 0.00 0.00 2.90
3765 5047 3.374220 TGTTCTTTGTCGGACGTACAT 57.626 42.857 0.00 0.00 0.00 2.29
3766 5048 4.502171 TGTTCTTTGTCGGACGTACATA 57.498 40.909 0.00 0.00 0.00 2.29
3767 5049 4.478699 TGTTCTTTGTCGGACGTACATAG 58.521 43.478 0.00 0.00 0.00 2.23
3768 5050 3.770263 TCTTTGTCGGACGTACATAGG 57.230 47.619 0.00 0.00 0.00 2.57
3769 5051 2.159338 TCTTTGTCGGACGTACATAGGC 60.159 50.000 0.00 0.00 0.00 3.93
3770 5052 0.457035 TTGTCGGACGTACATAGGCC 59.543 55.000 0.00 0.00 0.00 5.19
3771 5053 0.680601 TGTCGGACGTACATAGGCCA 60.681 55.000 5.01 0.00 0.00 5.36
3772 5054 0.672342 GTCGGACGTACATAGGCCAT 59.328 55.000 5.01 0.00 0.00 4.40
3773 5055 0.671796 TCGGACGTACATAGGCCATG 59.328 55.000 5.01 9.62 40.78 3.66
3774 5056 0.671796 CGGACGTACATAGGCCATGA 59.328 55.000 18.41 0.00 38.10 3.07
3775 5057 1.335964 CGGACGTACATAGGCCATGAG 60.336 57.143 18.41 12.34 38.10 2.90
3789 5071 0.392863 CATGAGCCATGACCCACGAA 60.393 55.000 8.92 0.00 43.81 3.85
3795 5077 1.668419 CCATGACCCACGAATCCTTC 58.332 55.000 0.00 0.00 0.00 3.46
3813 5095 4.766891 TCCTTCAAAACTGACCCATGAATC 59.233 41.667 0.00 0.00 30.39 2.52
3819 5106 5.649782 AAACTGACCCATGAATCACAATC 57.350 39.130 0.00 0.00 0.00 2.67
3828 5115 1.733912 TGAATCACAATCGTGCAGCTC 59.266 47.619 0.00 0.00 43.28 4.09
3984 5271 3.822192 TCGACGGGCCACATCTCG 61.822 66.667 4.39 0.00 0.00 4.04
4023 5310 2.125552 CTGACCATCGCCTTCGCA 60.126 61.111 0.00 0.00 35.26 5.10
4091 5378 2.191641 GGTGCTGGGCTCCATCTC 59.808 66.667 5.85 0.00 41.27 2.75
4273 5560 1.589993 CGTCGCTAGCTGACCATGG 60.590 63.158 24.20 11.19 32.68 3.66
4284 5571 1.211212 CTGACCATGGCTGAATCCTCA 59.789 52.381 13.04 4.36 0.00 3.86
4285 5572 1.848388 TGACCATGGCTGAATCCTCAT 59.152 47.619 13.04 0.00 0.00 2.90
4290 5577 1.146930 GGCTGAATCCTCATCGCCA 59.853 57.895 0.00 0.00 36.86 5.69
4437 5746 1.010125 GCAACGTGCGTGTGAATGT 60.010 52.632 0.00 0.00 31.71 2.71
4439 5748 1.333347 GCAACGTGCGTGTGAATGTAA 60.333 47.619 0.00 0.00 31.71 2.41
4442 5751 1.790623 ACGTGCGTGTGAATGTAACTC 59.209 47.619 0.00 0.00 0.00 3.01
4443 5752 2.058798 CGTGCGTGTGAATGTAACTCT 58.941 47.619 0.00 0.00 0.00 3.24
4447 5756 2.668457 GCGTGTGAATGTAACTCTCAGG 59.332 50.000 0.00 0.00 0.00 3.86
4448 5757 3.614150 GCGTGTGAATGTAACTCTCAGGA 60.614 47.826 0.00 0.00 0.00 3.86
4456 5765 5.850557 ATGTAACTCTCAGGACAGAGATG 57.149 43.478 4.48 0.00 43.27 2.90
4459 5768 3.737559 ACTCTCAGGACAGAGATGTCT 57.262 47.619 8.18 0.00 43.27 3.41
4486 5795 3.679980 GTCTGTAATGATGACTGTGCGTT 59.320 43.478 0.00 0.00 0.00 4.84
4633 5946 2.667318 CGGCGTGTACAAGCTGGTG 61.667 63.158 28.55 15.22 38.30 4.17
4660 5973 2.254651 GACGTGAACGGCGAGACT 59.745 61.111 16.62 0.00 44.95 3.24
4739 6073 2.083774 CATGTACGGTTGGTTGCTGAT 58.916 47.619 0.00 0.00 0.00 2.90
4777 6111 4.810730 CGGACGCCGGTAAACATA 57.189 55.556 1.90 0.00 44.15 2.29
4778 6112 3.277652 CGGACGCCGGTAAACATAT 57.722 52.632 1.90 0.00 44.15 1.78
4780 6114 2.741612 CGGACGCCGGTAAACATATTA 58.258 47.619 1.90 0.00 44.15 0.98
4781 6115 2.472488 CGGACGCCGGTAAACATATTAC 59.528 50.000 1.90 0.00 44.15 1.89
4783 6117 3.737774 GGACGCCGGTAAACATATTACTC 59.262 47.826 1.90 0.00 0.00 2.59
4808 6152 1.133025 GATTTCCATGTTCCAGTGCCG 59.867 52.381 0.00 0.00 0.00 5.69
4812 6156 4.015406 ATGTTCCAGTGCCGCGGA 62.015 61.111 33.48 11.82 0.00 5.54
4873 6222 8.967552 TTGTAATAAATGAATTAACGCCGTTT 57.032 26.923 8.19 0.00 0.00 3.60
4899 6256 2.432628 CCAGAACGGCGTGGACTC 60.433 66.667 15.70 7.43 35.67 3.36
4917 6275 6.757478 GTGGACTCTGCTTTATTTACTCCTAC 59.243 42.308 0.00 0.00 0.00 3.18
4918 6276 6.668283 TGGACTCTGCTTTATTTACTCCTACT 59.332 38.462 0.00 0.00 0.00 2.57
4919 6277 7.837689 TGGACTCTGCTTTATTTACTCCTACTA 59.162 37.037 0.00 0.00 0.00 1.82
4920 6278 8.693625 GGACTCTGCTTTATTTACTCCTACTAA 58.306 37.037 0.00 0.00 0.00 2.24
4932 6290 8.757982 TTTACTCCTACTAATAGAATGTCCGT 57.242 34.615 0.00 0.00 0.00 4.69
4933 6291 6.636562 ACTCCTACTAATAGAATGTCCGTG 57.363 41.667 0.00 0.00 0.00 4.94
4934 6292 5.009811 ACTCCTACTAATAGAATGTCCGTGC 59.990 44.000 0.00 0.00 0.00 5.34
4935 6293 4.891168 TCCTACTAATAGAATGTCCGTGCA 59.109 41.667 0.00 0.00 0.00 4.57
4936 6294 5.538813 TCCTACTAATAGAATGTCCGTGCAT 59.461 40.000 0.00 0.00 0.00 3.96
4937 6295 6.041637 TCCTACTAATAGAATGTCCGTGCATT 59.958 38.462 0.00 1.98 41.28 3.56
4938 6296 5.991328 ACTAATAGAATGTCCGTGCATTG 57.009 39.130 6.44 0.00 38.98 2.82
4939 6297 3.698029 AATAGAATGTCCGTGCATTGC 57.302 42.857 0.46 0.46 38.98 3.56
4940 6298 2.401583 TAGAATGTCCGTGCATTGCT 57.598 45.000 10.49 6.47 38.98 3.91
4961 6319 6.711277 TGCTATGATTAAGTGACAGTCCTTT 58.289 36.000 8.93 1.81 0.00 3.11
5031 6389 2.424601 CAACTATGCACCAATCCAGTGG 59.575 50.000 1.40 1.40 44.92 4.00
5032 6390 1.027357 CTATGCACCAATCCAGTGGC 58.973 55.000 3.51 0.00 43.00 5.01
5033 6391 0.747644 TATGCACCAATCCAGTGGCG 60.748 55.000 3.51 0.00 43.00 5.69
5034 6392 3.443045 GCACCAATCCAGTGGCGG 61.443 66.667 3.51 7.43 43.00 6.13
5035 6393 2.350895 CACCAATCCAGTGGCGGA 59.649 61.111 16.45 0.00 43.00 5.54
5036 6394 1.746615 CACCAATCCAGTGGCGGAG 60.747 63.158 16.45 7.03 43.00 4.63
5055 6413 1.114627 GCTTGGGCTAAAATCAGGGG 58.885 55.000 0.00 0.00 35.22 4.79
5056 6414 1.780503 CTTGGGCTAAAATCAGGGGG 58.219 55.000 0.00 0.00 0.00 5.40
5071 6429 2.517919 GGGGGCATTGGCTAGGAG 59.482 66.667 10.31 0.00 40.87 3.69
5072 6430 2.517919 GGGGCATTGGCTAGGAGG 59.482 66.667 10.31 0.00 40.87 4.30
5073 6431 2.517919 GGGCATTGGCTAGGAGGG 59.482 66.667 10.31 0.00 40.87 4.30
5074 6432 2.517919 GGCATTGGCTAGGAGGGG 59.482 66.667 2.42 0.00 40.87 4.79
5075 6433 2.203408 GCATTGGCTAGGAGGGGC 60.203 66.667 0.00 0.00 36.96 5.80
5076 6434 3.060614 GCATTGGCTAGGAGGGGCA 62.061 63.158 0.00 0.00 36.96 5.36
5078 6436 3.930144 TTGGCTAGGAGGGGCAAA 58.070 55.556 0.00 0.00 44.18 3.68
5079 6437 1.382629 TTGGCTAGGAGGGGCAAAC 59.617 57.895 0.00 0.00 44.18 2.93
5080 6438 1.431195 TTGGCTAGGAGGGGCAAACA 61.431 55.000 0.00 0.00 44.18 2.83
5081 6439 1.382629 GGCTAGGAGGGGCAAACAA 59.617 57.895 0.00 0.00 0.00 2.83
5082 6440 0.251608 GGCTAGGAGGGGCAAACAAA 60.252 55.000 0.00 0.00 0.00 2.83
5083 6441 1.627864 GCTAGGAGGGGCAAACAAAA 58.372 50.000 0.00 0.00 0.00 2.44
5084 6442 2.179427 GCTAGGAGGGGCAAACAAAAT 58.821 47.619 0.00 0.00 0.00 1.82
5085 6443 2.166459 GCTAGGAGGGGCAAACAAAATC 59.834 50.000 0.00 0.00 0.00 2.17
5086 6444 2.397044 AGGAGGGGCAAACAAAATCA 57.603 45.000 0.00 0.00 0.00 2.57
5087 6445 1.970640 AGGAGGGGCAAACAAAATCAC 59.029 47.619 0.00 0.00 0.00 3.06
5088 6446 1.691434 GGAGGGGCAAACAAAATCACA 59.309 47.619 0.00 0.00 0.00 3.58
5089 6447 2.103941 GGAGGGGCAAACAAAATCACAA 59.896 45.455 0.00 0.00 0.00 3.33
5090 6448 3.244526 GGAGGGGCAAACAAAATCACAAT 60.245 43.478 0.00 0.00 0.00 2.71
5091 6449 4.020662 GGAGGGGCAAACAAAATCACAATA 60.021 41.667 0.00 0.00 0.00 1.90
5092 6450 5.338300 GGAGGGGCAAACAAAATCACAATAT 60.338 40.000 0.00 0.00 0.00 1.28
5093 6451 5.490159 AGGGGCAAACAAAATCACAATATG 58.510 37.500 0.00 0.00 0.00 1.78
5094 6452 4.094739 GGGGCAAACAAAATCACAATATGC 59.905 41.667 0.00 0.00 0.00 3.14
5095 6453 4.937015 GGGCAAACAAAATCACAATATGCT 59.063 37.500 0.00 0.00 0.00 3.79
5096 6454 5.163834 GGGCAAACAAAATCACAATATGCTG 60.164 40.000 0.00 0.00 0.00 4.41
5097 6455 5.638657 GGCAAACAAAATCACAATATGCTGA 59.361 36.000 0.00 0.00 0.00 4.26
5098 6456 6.314400 GGCAAACAAAATCACAATATGCTGAT 59.686 34.615 0.00 0.00 0.00 2.90
5099 6457 7.148373 GGCAAACAAAATCACAATATGCTGATT 60.148 33.333 3.32 3.32 38.50 2.57
5100 6458 8.231837 GCAAACAAAATCACAATATGCTGATTT 58.768 29.630 12.20 12.20 45.09 2.17
5128 6486 8.066612 AGTGAAAAATGGGTCAAATACATAGG 57.933 34.615 0.00 0.00 0.00 2.57
5129 6487 7.673926 AGTGAAAAATGGGTCAAATACATAGGT 59.326 33.333 0.00 0.00 0.00 3.08
5130 6488 8.962679 GTGAAAAATGGGTCAAATACATAGGTA 58.037 33.333 0.00 0.00 0.00 3.08
5131 6489 9.707957 TGAAAAATGGGTCAAATACATAGGTAT 57.292 29.630 0.00 0.00 41.98 2.73
5138 6496 9.052365 TGGGTCAAATACATAGGTATATATGCA 57.948 33.333 0.00 0.00 39.28 3.96
5139 6497 9.899661 GGGTCAAATACATAGGTATATATGCAA 57.100 33.333 0.00 0.00 39.28 4.08
5151 6509 8.332996 AGGTATATATGCAATTCTTTGAGCTG 57.667 34.615 0.00 0.00 34.60 4.24
5152 6510 7.392673 AGGTATATATGCAATTCTTTGAGCTGG 59.607 37.037 0.00 0.00 34.60 4.85
5153 6511 7.391554 GGTATATATGCAATTCTTTGAGCTGGA 59.608 37.037 0.00 0.00 34.60 3.86
5154 6512 5.769484 ATATGCAATTCTTTGAGCTGGAG 57.231 39.130 0.00 0.00 34.60 3.86
5155 6513 2.165167 TGCAATTCTTTGAGCTGGAGG 58.835 47.619 0.00 0.00 34.60 4.30
5156 6514 1.475682 GCAATTCTTTGAGCTGGAGGG 59.524 52.381 0.00 0.00 34.60 4.30
5157 6515 1.475682 CAATTCTTTGAGCTGGAGGGC 59.524 52.381 0.00 0.00 34.60 5.19
5158 6516 0.033699 ATTCTTTGAGCTGGAGGGCC 60.034 55.000 0.00 0.00 0.00 5.80
5159 6517 1.426251 TTCTTTGAGCTGGAGGGCCA 61.426 55.000 6.18 0.00 43.47 5.36
5160 6518 1.676967 CTTTGAGCTGGAGGGCCAC 60.677 63.158 6.18 0.00 39.92 5.01
5161 6519 3.210012 TTTGAGCTGGAGGGCCACC 62.210 63.158 13.74 13.74 39.92 4.61
5180 6538 4.783501 CCCAGGTTGGCCCCCATG 62.784 72.222 10.93 4.05 35.79 3.66
5181 6539 3.671410 CCAGGTTGGCCCCCATGA 61.671 66.667 10.93 0.00 31.53 3.07
5182 6540 2.444696 CAGGTTGGCCCCCATGAA 59.555 61.111 10.93 0.00 31.53 2.57
5183 6541 1.683365 CAGGTTGGCCCCCATGAAG 60.683 63.158 10.93 0.00 31.53 3.02
5184 6542 3.076916 GGTTGGCCCCCATGAAGC 61.077 66.667 0.00 0.00 31.53 3.86
5185 6543 2.037847 GTTGGCCCCCATGAAGCT 59.962 61.111 0.00 0.00 31.53 3.74
5186 6544 2.054453 GTTGGCCCCCATGAAGCTC 61.054 63.158 0.00 0.00 31.53 4.09
5187 6545 3.301222 TTGGCCCCCATGAAGCTCC 62.301 63.158 0.00 0.00 31.53 4.70
5188 6546 4.883354 GGCCCCCATGAAGCTCCG 62.883 72.222 0.00 0.00 0.00 4.63
5190 6548 4.883354 CCCCCATGAAGCTCCGCC 62.883 72.222 0.00 0.00 0.00 6.13
5191 6549 4.113815 CCCCATGAAGCTCCGCCA 62.114 66.667 0.00 0.00 0.00 5.69
5192 6550 2.825836 CCCATGAAGCTCCGCCAC 60.826 66.667 0.00 0.00 0.00 5.01
5193 6551 2.270205 CCATGAAGCTCCGCCACT 59.730 61.111 0.00 0.00 0.00 4.00
5194 6552 2.110967 CCATGAAGCTCCGCCACTG 61.111 63.158 0.00 0.00 0.00 3.66
5195 6553 2.437359 ATGAAGCTCCGCCACTGC 60.437 61.111 0.00 0.00 0.00 4.40
5196 6554 3.258228 ATGAAGCTCCGCCACTGCA 62.258 57.895 0.00 0.00 37.32 4.41
5197 6555 3.426568 GAAGCTCCGCCACTGCAC 61.427 66.667 0.00 0.00 37.32 4.57
5201 6559 2.360350 CTCCGCCACTGCACCAAT 60.360 61.111 0.00 0.00 37.32 3.16
5202 6560 2.359850 TCCGCCACTGCACCAATC 60.360 61.111 0.00 0.00 37.32 2.67
5203 6561 3.803082 CCGCCACTGCACCAATCG 61.803 66.667 0.00 0.00 37.32 3.34
5204 6562 4.465512 CGCCACTGCACCAATCGC 62.466 66.667 0.00 0.00 37.32 4.58
5205 6563 4.120331 GCCACTGCACCAATCGCC 62.120 66.667 0.00 0.00 37.47 5.54
5206 6564 2.360350 CCACTGCACCAATCGCCT 60.360 61.111 0.00 0.00 0.00 5.52
5207 6565 2.693762 CCACTGCACCAATCGCCTG 61.694 63.158 0.00 0.00 0.00 4.85
5208 6566 3.058160 ACTGCACCAATCGCCTGC 61.058 61.111 0.00 0.00 0.00 4.85
5209 6567 3.057548 CTGCACCAATCGCCTGCA 61.058 61.111 0.00 0.00 38.60 4.41
5271 6630 2.300437 CCTTCGTCTTCCTCCTTCTGTT 59.700 50.000 0.00 0.00 0.00 3.16
5276 6635 3.307059 CGTCTTCCTCCTTCTGTTCCAAT 60.307 47.826 0.00 0.00 0.00 3.16
5323 6682 1.202348 CCGATGTCGATGTCTTGCTCT 60.202 52.381 3.62 0.00 43.02 4.09
5330 6689 6.641169 TGTCGATGTCTTGCTCTAATCTAT 57.359 37.500 0.00 0.00 0.00 1.98
5337 6696 4.217550 GTCTTGCTCTAATCTATCCGAGCT 59.782 45.833 10.89 0.00 46.70 4.09
5346 6705 1.133637 TCTATCCGAGCTGCCTTCTCT 60.134 52.381 0.00 0.00 0.00 3.10
5399 6758 0.874390 CCGGTGTTGATGTTGACCTG 59.126 55.000 0.00 0.00 0.00 4.00
5443 6802 8.206325 TGCAAATCTCAGATAATCTCTTCAAC 57.794 34.615 0.00 0.00 29.16 3.18
5444 6803 7.825761 TGCAAATCTCAGATAATCTCTTCAACA 59.174 33.333 0.00 0.00 29.16 3.33
5476 6835 3.508762 GCAATGGCATATGCATAGCTTC 58.491 45.455 28.07 10.16 44.36 3.86
5542 6908 8.806146 ACCTGAATATATTGCTCAAAAAGTTGT 58.194 29.630 1.78 0.00 36.07 3.32
5576 6942 0.037734 ACCCCTTAAGTTTCGGCTGG 59.962 55.000 0.97 0.00 0.00 4.85
5653 7019 1.269778 GGAAACCAGGCTGAAAACTGC 60.270 52.381 17.94 0.00 33.43 4.40
5671 7037 3.815401 ACTGCACAAGTAGCAAAGGTTAG 59.185 43.478 0.00 0.00 42.17 2.34
5686 7052 8.864087 AGCAAAGGTTAGAAAAGATGAGAAAAT 58.136 29.630 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.111375 TCACTAAGTTTCTCGAGCCATC 57.889 45.455 7.81 0.00 0.00 3.51
1 2 4.220821 TCTTCACTAAGTTTCTCGAGCCAT 59.779 41.667 7.81 0.00 34.13 4.40
2 3 3.572682 TCTTCACTAAGTTTCTCGAGCCA 59.427 43.478 7.81 0.00 34.13 4.75
3 4 4.175787 TCTTCACTAAGTTTCTCGAGCC 57.824 45.455 7.81 0.00 34.13 4.70
4 5 5.164954 ACATCTTCACTAAGTTTCTCGAGC 58.835 41.667 7.81 0.00 34.13 5.03
5 6 7.087639 AGAACATCTTCACTAAGTTTCTCGAG 58.912 38.462 5.93 5.93 34.13 4.04
6 7 6.982852 AGAACATCTTCACTAAGTTTCTCGA 58.017 36.000 0.00 0.00 34.13 4.04
7 8 7.087639 AGAGAACATCTTCACTAAGTTTCTCG 58.912 38.462 14.20 0.00 42.01 4.04
8 9 8.825667 AAGAGAACATCTTCACTAAGTTTCTC 57.174 34.615 13.23 13.23 45.50 2.87
22 23 4.363991 AGCCAAACTGAAGAGAACATCT 57.636 40.909 0.00 0.00 41.27 2.90
23 24 5.444663 AAAGCCAAACTGAAGAGAACATC 57.555 39.130 0.00 0.00 0.00 3.06
24 25 6.944862 AGATAAAGCCAAACTGAAGAGAACAT 59.055 34.615 0.00 0.00 0.00 2.71
25 26 6.299141 AGATAAAGCCAAACTGAAGAGAACA 58.701 36.000 0.00 0.00 0.00 3.18
26 27 6.401581 CGAGATAAAGCCAAACTGAAGAGAAC 60.402 42.308 0.00 0.00 0.00 3.01
27 28 5.639506 CGAGATAAAGCCAAACTGAAGAGAA 59.360 40.000 0.00 0.00 0.00 2.87
28 29 5.171476 CGAGATAAAGCCAAACTGAAGAGA 58.829 41.667 0.00 0.00 0.00 3.10
29 30 4.932200 ACGAGATAAAGCCAAACTGAAGAG 59.068 41.667 0.00 0.00 0.00 2.85
30 31 4.894784 ACGAGATAAAGCCAAACTGAAGA 58.105 39.130 0.00 0.00 0.00 2.87
31 32 5.179368 TGAACGAGATAAAGCCAAACTGAAG 59.821 40.000 0.00 0.00 0.00 3.02
32 33 5.060506 TGAACGAGATAAAGCCAAACTGAA 58.939 37.500 0.00 0.00 0.00 3.02
33 34 4.637276 TGAACGAGATAAAGCCAAACTGA 58.363 39.130 0.00 0.00 0.00 3.41
34 35 5.356882 TTGAACGAGATAAAGCCAAACTG 57.643 39.130 0.00 0.00 0.00 3.16
35 36 5.531287 ACTTTGAACGAGATAAAGCCAAACT 59.469 36.000 0.00 0.00 35.40 2.66
36 37 5.758924 ACTTTGAACGAGATAAAGCCAAAC 58.241 37.500 0.00 0.00 35.40 2.93
37 38 6.385649 AACTTTGAACGAGATAAAGCCAAA 57.614 33.333 0.00 0.00 35.40 3.28
38 39 7.606456 AGATAACTTTGAACGAGATAAAGCCAA 59.394 33.333 0.00 0.00 35.40 4.52
39 40 7.064609 CAGATAACTTTGAACGAGATAAAGCCA 59.935 37.037 0.00 0.00 35.40 4.75
40 41 7.277981 TCAGATAACTTTGAACGAGATAAAGCC 59.722 37.037 0.00 0.00 35.40 4.35
41 42 8.186178 TCAGATAACTTTGAACGAGATAAAGC 57.814 34.615 0.00 0.00 35.40 3.51
43 44 9.869757 TCATCAGATAACTTTGAACGAGATAAA 57.130 29.630 0.00 0.00 0.00 1.40
44 45 9.869757 TTCATCAGATAACTTTGAACGAGATAA 57.130 29.630 0.00 0.00 0.00 1.75
46 47 8.954950 ATTCATCAGATAACTTTGAACGAGAT 57.045 30.769 0.00 0.00 32.34 2.75
47 48 7.220875 CGATTCATCAGATAACTTTGAACGAGA 59.779 37.037 0.00 0.00 32.34 4.04
48 49 7.333269 CGATTCATCAGATAACTTTGAACGAG 58.667 38.462 0.00 0.00 32.34 4.18
49 50 6.237835 GCGATTCATCAGATAACTTTGAACGA 60.238 38.462 14.21 0.00 32.34 3.85
50 51 5.898606 GCGATTCATCAGATAACTTTGAACG 59.101 40.000 0.00 0.00 32.34 3.95
51 52 6.195165 GGCGATTCATCAGATAACTTTGAAC 58.805 40.000 0.00 0.00 32.34 3.18
52 53 5.296780 GGGCGATTCATCAGATAACTTTGAA 59.703 40.000 0.00 0.00 33.33 2.69
53 54 4.816385 GGGCGATTCATCAGATAACTTTGA 59.184 41.667 0.00 0.00 0.00 2.69
54 55 4.319046 CGGGCGATTCATCAGATAACTTTG 60.319 45.833 0.00 0.00 0.00 2.77
55 56 3.809832 CGGGCGATTCATCAGATAACTTT 59.190 43.478 0.00 0.00 0.00 2.66
56 57 3.393800 CGGGCGATTCATCAGATAACTT 58.606 45.455 0.00 0.00 0.00 2.66
71 72 4.373116 GTGAAGTGGAGCGGGCGA 62.373 66.667 0.00 0.00 0.00 5.54
85 88 2.368439 AGACAAGCAAACAAGCAGTGA 58.632 42.857 0.00 0.00 36.85 3.41
110 116 6.426025 TGATGATCGTACGTACTAGCATTAGT 59.574 38.462 25.62 9.98 42.66 2.24
111 117 6.737301 GTGATGATCGTACGTACTAGCATTAG 59.263 42.308 25.62 9.02 29.79 1.73
112 118 6.426025 AGTGATGATCGTACGTACTAGCATTA 59.574 38.462 25.62 20.72 29.79 1.90
114 120 4.755629 AGTGATGATCGTACGTACTAGCAT 59.244 41.667 25.29 25.29 31.87 3.79
115 121 4.124970 AGTGATGATCGTACGTACTAGCA 58.875 43.478 22.55 20.57 0.00 3.49
116 122 4.663639 CGAGTGATGATCGTACGTACTAGC 60.664 50.000 22.55 15.57 35.48 3.42
117 123 4.932364 CGAGTGATGATCGTACGTACTAG 58.068 47.826 22.55 9.03 35.48 2.57
118 124 4.961433 CGAGTGATGATCGTACGTACTA 57.039 45.455 22.55 13.18 35.48 1.82
119 125 3.856104 CGAGTGATGATCGTACGTACT 57.144 47.619 22.55 5.64 35.48 2.73
156 162 1.469940 GGTTGAGATCGCGTCATCAGT 60.470 52.381 5.77 0.00 0.00 3.41
157 163 1.203928 GGTTGAGATCGCGTCATCAG 58.796 55.000 5.77 0.00 0.00 2.90
173 179 2.338809 TCACAAGACATGGAGAGGGTT 58.661 47.619 0.00 0.00 0.00 4.11
175 181 3.641434 AATCACAAGACATGGAGAGGG 57.359 47.619 0.00 0.00 0.00 4.30
178 184 4.142160 CCGACTAATCACAAGACATGGAGA 60.142 45.833 0.00 0.00 0.00 3.71
292 298 7.713507 AGCTGTCTATCTATATAGCCGAAGTAG 59.286 40.741 4.75 0.37 35.90 2.57
319 325 1.535444 ATGGAGTGGGTGTGGACGA 60.535 57.895 0.00 0.00 0.00 4.20
347 353 0.616111 GAGGAGGAAGGAGCAGTGGA 60.616 60.000 0.00 0.00 0.00 4.02
404 410 1.701031 TTGCAGGAACAGGAACGGGA 61.701 55.000 0.00 0.00 0.00 5.14
468 474 3.556999 TCTATCTCAAGAAGAGGACCGG 58.443 50.000 0.00 0.00 44.81 5.28
471 477 4.037923 CCAGCTCTATCTCAAGAAGAGGAC 59.962 50.000 15.07 5.70 44.81 3.85
476 482 2.433604 TGCCCAGCTCTATCTCAAGAAG 59.566 50.000 0.00 0.00 0.00 2.85
503 513 1.905512 GCTAAGGAAGCGGAAGGGA 59.094 57.895 0.00 0.00 42.53 4.20
512 522 4.021102 TCTCAAGGTTTGGCTAAGGAAG 57.979 45.455 0.00 0.00 0.00 3.46
564 582 1.412710 GTTGGATCTGGGTCGATGCTA 59.587 52.381 0.00 0.00 33.48 3.49
641 667 6.378564 GTGAATCCAGCCTACTAGATATGCTA 59.621 42.308 0.00 0.00 33.40 3.49
642 668 5.186797 GTGAATCCAGCCTACTAGATATGCT 59.813 44.000 0.00 0.00 35.33 3.79
769 795 6.575162 ACATGATTGGAGTTTCTGTTAACC 57.425 37.500 0.00 0.00 0.00 2.85
773 799 5.065218 GCGATACATGATTGGAGTTTCTGTT 59.935 40.000 0.00 0.00 0.00 3.16
914 942 0.872388 GACGAATGTGGTGGTGGAAC 59.128 55.000 0.00 0.00 0.00 3.62
968 997 2.014068 GCTAATCAAGCGGCCAACTCT 61.014 52.381 2.24 0.00 42.53 3.24
970 999 2.482326 GCTAATCAAGCGGCCAACT 58.518 52.632 2.24 0.00 42.53 3.16
1261 1302 2.890311 ACTGAGAGAGAGGCCGAATATG 59.110 50.000 0.00 0.00 0.00 1.78
1337 1497 6.037940 AGCACTCACAAGAACAGCAATATATG 59.962 38.462 0.00 0.00 0.00 1.78
1370 1530 4.408921 TCCATTTCCAGATACGGAACTCAT 59.591 41.667 0.00 0.00 44.80 2.90
1371 1531 3.772572 TCCATTTCCAGATACGGAACTCA 59.227 43.478 0.00 0.00 44.80 3.41
1397 1558 3.253432 GGCACAGTTTCGGAAAAGAAGAT 59.747 43.478 4.46 0.00 0.00 2.40
1403 1564 2.026522 CCGGCACAGTTTCGGAAAA 58.973 52.632 4.46 0.00 45.96 2.29
1410 1571 1.981256 AAATGTCTCCGGCACAGTTT 58.019 45.000 11.83 9.29 27.81 2.66
1443 1609 1.083489 TTGTACCGTCCCGTACTACG 58.917 55.000 1.32 1.32 39.51 3.51
1480 1654 1.008538 GGCTGTGTTTTGTGCTCCG 60.009 57.895 0.00 0.00 0.00 4.63
1481 1655 0.031178 CTGGCTGTGTTTTGTGCTCC 59.969 55.000 0.00 0.00 0.00 4.70
1484 1658 1.926510 GAAACTGGCTGTGTTTTGTGC 59.073 47.619 0.00 0.00 37.70 4.57
1485 1659 3.119531 TCTGAAACTGGCTGTGTTTTGTG 60.120 43.478 0.00 0.00 37.70 3.33
1495 1669 1.002087 CCCTACGTTCTGAAACTGGCT 59.998 52.381 0.00 0.00 32.95 4.75
1513 1687 1.036707 CTAGCACTCTAGCAGGACCC 58.963 60.000 0.00 0.00 36.24 4.46
1516 1690 2.516227 ACACTAGCACTCTAGCAGGA 57.484 50.000 0.00 0.00 44.83 3.86
1597 1771 0.111061 TTTGTGCACCTGATCTGCCT 59.889 50.000 15.69 0.00 33.36 4.75
1598 1772 0.961019 TTTTGTGCACCTGATCTGCC 59.039 50.000 15.69 0.00 33.36 4.85
1603 1777 2.550639 GCCCAAATTTTGTGCACCTGAT 60.551 45.455 15.69 2.09 34.02 2.90
1617 1791 2.999063 GCAGTGCCAGGCCCAAAT 60.999 61.111 9.64 0.00 0.00 2.32
1662 1842 1.346395 TGGTATGGCGTCACAGAGTTT 59.654 47.619 0.00 0.00 0.00 2.66
1793 2313 8.617809 TGGTATTTTAAGATCTCCGCAAATTAC 58.382 33.333 0.00 5.85 0.00 1.89
1817 2337 5.571784 ATTTGTAAGTGATGCACTCATGG 57.428 39.130 0.00 0.00 44.62 3.66
1868 2401 4.189231 ACGTTAGAATACATTGGACTGGC 58.811 43.478 0.00 0.00 0.00 4.85
1910 2443 4.957954 TCAATGAAGGCATAATTTCCAGCT 59.042 37.500 0.00 0.00 33.44 4.24
1967 2501 6.435164 AGCATGTTCCCATACTTTCCTTAAT 58.565 36.000 0.00 0.00 0.00 1.40
2033 2570 7.786178 ATAGCAAAATATTGTGCGAAGAGTA 57.214 32.000 22.05 10.38 45.62 2.59
2135 2673 4.292186 TCAAATTGGAACTCTCCTCTGG 57.708 45.455 0.00 0.00 42.94 3.86
2191 2732 7.013369 GCCTTATAAAAAGTAATGGAGGGAGTG 59.987 40.741 0.00 0.00 0.00 3.51
2196 2737 6.937436 ACGCCTTATAAAAAGTAATGGAGG 57.063 37.500 0.00 0.00 0.00 4.30
2350 2905 4.739716 GTGTGTTTGACTACATTTGCAAGG 59.260 41.667 0.00 0.00 0.00 3.61
2399 2957 3.201487 CCCTCCCGTCCCTTTTTATAAGT 59.799 47.826 0.00 0.00 0.00 2.24
2404 2962 0.476219 ACCCCTCCCGTCCCTTTTTA 60.476 55.000 0.00 0.00 0.00 1.52
2463 3021 5.508994 CGGATAAGCCAAGTTCAAAGGTTTT 60.509 40.000 0.00 0.00 35.94 2.43
2475 3033 2.817258 TGGAAACAACGGATAAGCCAAG 59.183 45.455 0.00 0.00 37.44 3.61
2499 3057 2.023673 TCAAGGTTGTGCAAGGAGTTG 58.976 47.619 0.00 0.00 36.67 3.16
2503 3061 2.435372 AGTTCAAGGTTGTGCAAGGA 57.565 45.000 0.00 0.00 0.00 3.36
2505 3063 7.370383 ACATATTTAGTTCAAGGTTGTGCAAG 58.630 34.615 0.00 0.00 0.00 4.01
2506 3064 7.283625 ACATATTTAGTTCAAGGTTGTGCAA 57.716 32.000 0.00 0.00 0.00 4.08
2509 3067 7.144661 TGCAACATATTTAGTTCAAGGTTGTG 58.855 34.615 0.00 0.00 37.34 3.33
2511 3069 8.761575 ATTGCAACATATTTAGTTCAAGGTTG 57.238 30.769 0.00 0.00 37.88 3.77
2547 3106 8.463930 ACACTTTAGATGAAATTTCTTGACCA 57.536 30.769 18.64 0.00 0.00 4.02
2548 3107 8.567948 TGACACTTTAGATGAAATTTCTTGACC 58.432 33.333 18.64 2.09 0.00 4.02
2549 3108 9.604626 CTGACACTTTAGATGAAATTTCTTGAC 57.395 33.333 18.64 7.77 0.00 3.18
2555 3114 7.177216 TGCATCCTGACACTTTAGATGAAATTT 59.823 33.333 2.63 0.00 37.16 1.82
2556 3115 6.660521 TGCATCCTGACACTTTAGATGAAATT 59.339 34.615 2.63 0.00 37.16 1.82
2566 3125 7.444299 ACATTTTTATTGCATCCTGACACTTT 58.556 30.769 0.00 0.00 0.00 2.66
2611 3170 9.566530 CGTTAGATCATCTTGGTGATATTCTAG 57.433 37.037 0.00 0.00 38.88 2.43
2614 3173 8.085296 ACTCGTTAGATCATCTTGGTGATATTC 58.915 37.037 0.00 0.00 38.88 1.75
2619 3178 5.661056 AACTCGTTAGATCATCTTGGTGA 57.339 39.130 0.00 0.00 0.00 4.02
2627 3186 9.653287 TTATTTCAGACAAACTCGTTAGATCAT 57.347 29.630 0.00 0.00 0.00 2.45
2629 3188 8.102716 CGTTATTTCAGACAAACTCGTTAGATC 58.897 37.037 0.00 0.00 0.00 2.75
2631 3190 6.364165 CCGTTATTTCAGACAAACTCGTTAGA 59.636 38.462 0.00 0.00 0.00 2.10
2632 3191 6.145048 ACCGTTATTTCAGACAAACTCGTTAG 59.855 38.462 0.00 0.00 0.00 2.34
2636 3304 4.985044 ACCGTTATTTCAGACAAACTCG 57.015 40.909 0.00 0.00 0.00 4.18
2641 3309 8.934507 AAATTTTGAACCGTTATTTCAGACAA 57.065 26.923 0.00 0.00 34.50 3.18
2642 3310 8.934507 AAAATTTTGAACCGTTATTTCAGACA 57.065 26.923 1.75 0.00 34.50 3.41
2652 3320 5.555552 CGCTTTTGAAAATTTTGAACCGTT 58.444 33.333 8.47 0.00 0.00 4.44
2654 3322 3.959385 GCGCTTTTGAAAATTTTGAACCG 59.041 39.130 8.47 9.77 0.00 4.44
2657 3325 4.849111 ACGCGCTTTTGAAAATTTTGAA 57.151 31.818 8.47 3.01 0.00 2.69
2659 3327 4.133836 GCTACGCGCTTTTGAAAATTTTG 58.866 39.130 8.47 0.00 35.14 2.44
2676 3344 7.216317 CAGAATTTTCCAAAACTATTCGCTACG 59.784 37.037 0.00 0.00 0.00 3.51
2680 3348 7.754924 TCATCAGAATTTTCCAAAACTATTCGC 59.245 33.333 0.00 0.00 0.00 4.70
2682 3350 9.065871 CGTCATCAGAATTTTCCAAAACTATTC 57.934 33.333 0.00 0.00 0.00 1.75
2684 3352 8.110860 ACGTCATCAGAATTTTCCAAAACTAT 57.889 30.769 0.00 0.00 0.00 2.12
2687 3355 5.339611 CGACGTCATCAGAATTTTCCAAAAC 59.660 40.000 17.16 0.00 0.00 2.43
2701 3369 2.288518 TGTTGGATTCACGACGTCATCA 60.289 45.455 17.16 6.27 0.00 3.07
2702 3370 2.333926 TGTTGGATTCACGACGTCATC 58.666 47.619 17.16 10.50 0.00 2.92
2708 3376 3.857052 TGGAGTATGTTGGATTCACGAC 58.143 45.455 0.00 0.00 0.00 4.34
2713 3381 8.281212 ACTAACAAATGGAGTATGTTGGATTC 57.719 34.615 7.99 0.00 37.63 2.52
2742 3410 9.575868 TTCCTGACAAACCTATACATACAAAAA 57.424 29.630 0.00 0.00 0.00 1.94
2745 3413 9.747898 ATTTTCCTGACAAACCTATACATACAA 57.252 29.630 0.00 0.00 0.00 2.41
2749 3417 9.747898 TTGTATTTTCCTGACAAACCTATACAT 57.252 29.630 0.00 0.00 30.37 2.29
2750 3418 9.747898 ATTGTATTTTCCTGACAAACCTATACA 57.252 29.630 0.00 0.00 36.70 2.29
2757 3425 7.599998 AGAATGCATTGTATTTTCCTGACAAAC 59.400 33.333 18.59 0.00 36.70 2.93
2777 3445 4.427312 CTTAATTGCCCTCAACAGAATGC 58.573 43.478 0.00 0.00 42.53 3.56
2781 3449 3.084039 CAGCTTAATTGCCCTCAACAGA 58.916 45.455 0.00 0.00 34.60 3.41
2783 3451 2.170166 CCAGCTTAATTGCCCTCAACA 58.830 47.619 0.00 0.00 34.60 3.33
2787 3455 0.684153 TGGCCAGCTTAATTGCCCTC 60.684 55.000 0.00 0.00 43.35 4.30
2788 3456 0.252193 TTGGCCAGCTTAATTGCCCT 60.252 50.000 5.11 0.00 43.35 5.19
2789 3457 0.612744 TTTGGCCAGCTTAATTGCCC 59.387 50.000 5.11 0.00 43.35 5.36
2790 3458 2.696989 ATTTGGCCAGCTTAATTGCC 57.303 45.000 5.11 0.00 44.27 4.52
2791 3459 4.114794 CAGTATTTGGCCAGCTTAATTGC 58.885 43.478 5.11 0.15 0.00 3.56
2792 3460 5.329035 ACAGTATTTGGCCAGCTTAATTG 57.671 39.130 5.11 1.84 0.00 2.32
2794 3462 7.475137 TTAAACAGTATTTGGCCAGCTTAAT 57.525 32.000 5.11 5.48 0.00 1.40
2795 3463 6.902771 TTAAACAGTATTTGGCCAGCTTAA 57.097 33.333 5.11 0.00 0.00 1.85
2796 3464 6.902771 TTTAAACAGTATTTGGCCAGCTTA 57.097 33.333 5.11 0.00 0.00 3.09
2798 3466 7.475137 TTATTTAAACAGTATTTGGCCAGCT 57.525 32.000 5.11 0.00 0.00 4.24
2799 3467 7.817478 AGTTTATTTAAACAGTATTTGGCCAGC 59.183 33.333 5.11 0.00 45.97 4.85
2934 3788 3.432046 CCATGTATGTTTGATTTGCCCCC 60.432 47.826 0.00 0.00 0.00 5.40
3037 3963 6.787085 AAGTGTGTCTCAACTTACATTAGC 57.213 37.500 0.00 0.00 0.00 3.09
3099 4051 9.777008 ATCATTTCCAATTTTTAGGGGTAGTAA 57.223 29.630 0.00 0.00 0.00 2.24
3104 4056 7.292356 GGGATATCATTTCCAATTTTTAGGGGT 59.708 37.037 4.83 0.00 34.77 4.95
3115 4067 5.238432 CGAACATTCGGGATATCATTTCCAA 59.762 40.000 4.83 0.00 46.30 3.53
3153 4107 8.986039 ATTGTCATTAAAAACGTTTGATTTGC 57.014 26.923 15.46 3.79 0.00 3.68
3183 4137 7.074653 ACTAAACTTGTCATCCTCCTGTTAA 57.925 36.000 0.00 0.00 0.00 2.01
3188 4142 5.071788 TGTCAACTAAACTTGTCATCCTCCT 59.928 40.000 0.00 0.00 0.00 3.69
3189 4143 5.305585 TGTCAACTAAACTTGTCATCCTCC 58.694 41.667 0.00 0.00 0.00 4.30
3197 4151 4.499696 GCAAGGCATGTCAACTAAACTTGT 60.500 41.667 0.00 0.00 37.12 3.16
3210 4165 1.342174 CCAGAAAGTTGCAAGGCATGT 59.658 47.619 0.00 0.00 38.76 3.21
3213 4168 1.774110 TTCCAGAAAGTTGCAAGGCA 58.226 45.000 0.00 0.00 36.47 4.75
3235 4190 5.387279 CAAATCGGCGTGTAGTGTATTTTT 58.613 37.500 6.85 0.00 0.00 1.94
3237 4192 3.181514 GCAAATCGGCGTGTAGTGTATTT 60.182 43.478 6.85 0.00 0.00 1.40
3238 4193 2.350498 GCAAATCGGCGTGTAGTGTATT 59.650 45.455 6.85 0.00 0.00 1.89
3239 4194 1.931172 GCAAATCGGCGTGTAGTGTAT 59.069 47.619 6.85 0.00 0.00 2.29
3365 4454 5.182001 AGTCAACTATGAGTTTTGGACATGC 59.818 40.000 9.59 0.00 36.03 4.06
3424 4513 1.087501 GGGAAGCAACCATTCTCGAC 58.912 55.000 1.88 0.00 0.00 4.20
3425 4514 0.984230 AGGGAAGCAACCATTCTCGA 59.016 50.000 1.88 0.00 32.16 4.04
3614 4873 3.333029 TCAGCGGTCTTGATCATCAAA 57.667 42.857 0.75 0.00 35.73 2.69
3691 4950 8.865420 TTCCTAGCACTAGTACCATATTCTAG 57.135 38.462 0.00 0.00 37.67 2.43
3692 4951 9.650714 TTTTCCTAGCACTAGTACCATATTCTA 57.349 33.333 0.00 0.00 0.00 2.10
3693 4952 8.548880 TTTTCCTAGCACTAGTACCATATTCT 57.451 34.615 0.00 0.00 0.00 2.40
3754 5036 0.671796 CATGGCCTATGTACGTCCGA 59.328 55.000 3.32 0.00 31.92 4.55
3755 5037 0.671796 TCATGGCCTATGTACGTCCG 59.328 55.000 3.32 0.00 38.01 4.79
3756 5038 1.605712 GCTCATGGCCTATGTACGTCC 60.606 57.143 3.32 0.00 38.01 4.79
3757 5039 1.784525 GCTCATGGCCTATGTACGTC 58.215 55.000 3.32 0.00 38.01 4.34
3758 5040 3.989104 GCTCATGGCCTATGTACGT 57.011 52.632 3.32 0.00 38.01 3.57
3768 5050 2.123428 GTGGGTCATGGCTCATGGC 61.123 63.158 1.61 11.77 44.67 4.40
3769 5051 1.820906 CGTGGGTCATGGCTCATGG 60.821 63.158 11.81 0.00 41.66 3.66
3770 5052 0.392863 TTCGTGGGTCATGGCTCATG 60.393 55.000 13.49 13.49 42.60 3.07
3771 5053 0.548031 ATTCGTGGGTCATGGCTCAT 59.452 50.000 1.61 0.00 0.00 2.90
3772 5054 0.107703 GATTCGTGGGTCATGGCTCA 60.108 55.000 0.00 0.00 0.00 4.26
3773 5055 0.815615 GGATTCGTGGGTCATGGCTC 60.816 60.000 0.00 0.00 0.00 4.70
3774 5056 1.224592 GGATTCGTGGGTCATGGCT 59.775 57.895 0.00 0.00 0.00 4.75
3775 5057 0.394352 AAGGATTCGTGGGTCATGGC 60.394 55.000 0.00 0.00 0.00 4.40
3789 5071 4.387026 TCATGGGTCAGTTTTGAAGGAT 57.613 40.909 0.00 0.00 34.49 3.24
3795 5077 4.852134 TGTGATTCATGGGTCAGTTTTG 57.148 40.909 0.00 0.00 0.00 2.44
3843 5130 0.747255 AGATGAGGATGAACGTCCCG 59.253 55.000 9.16 0.00 39.17 5.14
3846 5133 3.794028 CGAAGAAGATGAGGATGAACGTC 59.206 47.826 0.00 0.00 0.00 4.34
3948 5235 1.204704 GACAGGATGATGGTCGTCACA 59.795 52.381 2.03 0.00 39.69 3.58
4159 5446 3.402681 CTGGGCGGTGGAGATGGT 61.403 66.667 0.00 0.00 0.00 3.55
4273 5560 0.462581 TGTGGCGATGAGGATTCAGC 60.463 55.000 0.00 0.00 36.61 4.26
4448 5757 1.815613 CAGACCACGAGACATCTCTGT 59.184 52.381 7.29 4.37 40.75 3.41
4456 5765 4.106197 GTCATCATTACAGACCACGAGAC 58.894 47.826 0.00 0.00 0.00 3.36
4459 5768 3.509967 ACAGTCATCATTACAGACCACGA 59.490 43.478 0.00 0.00 32.82 4.35
4633 5946 1.009389 CGTTCACGTCCCTGAGCTTC 61.009 60.000 0.00 0.00 34.11 3.86
4692 6005 1.081242 GGAGTTTGCGTGCACATGG 60.081 57.895 18.64 1.23 0.00 3.66
4723 6037 2.093306 CTGATCAGCAACCAACCGTA 57.907 50.000 10.38 0.00 0.00 4.02
4739 6073 2.904866 GCACCCGGTTGTTGCTGA 60.905 61.111 0.00 0.00 0.00 4.26
4773 6107 7.963532 ACATGGAAATCGTAGGAGTAATATGT 58.036 34.615 0.00 0.00 0.00 2.29
4774 6108 8.833231 AACATGGAAATCGTAGGAGTAATATG 57.167 34.615 0.00 0.00 0.00 1.78
4776 6110 7.070198 TGGAACATGGAAATCGTAGGAGTAATA 59.930 37.037 0.00 0.00 0.00 0.98
4777 6111 6.126883 TGGAACATGGAAATCGTAGGAGTAAT 60.127 38.462 0.00 0.00 0.00 1.89
4778 6112 5.188163 TGGAACATGGAAATCGTAGGAGTAA 59.812 40.000 0.00 0.00 0.00 2.24
4780 6114 3.517901 TGGAACATGGAAATCGTAGGAGT 59.482 43.478 0.00 0.00 0.00 3.85
4781 6115 4.122776 CTGGAACATGGAAATCGTAGGAG 58.877 47.826 0.00 0.00 38.20 3.69
4783 6117 3.623060 CACTGGAACATGGAAATCGTAGG 59.377 47.826 0.00 0.00 38.20 3.18
4812 6156 1.006102 GCTAGCAGTCACGGTGTGT 60.006 57.895 10.63 0.00 34.79 3.72
4917 6275 4.512944 AGCAATGCACGGACATTCTATTAG 59.487 41.667 8.35 0.00 38.19 1.73
4918 6276 4.450976 AGCAATGCACGGACATTCTATTA 58.549 39.130 8.35 0.00 38.19 0.98
4919 6277 3.282021 AGCAATGCACGGACATTCTATT 58.718 40.909 8.35 0.00 38.19 1.73
4920 6278 2.923121 AGCAATGCACGGACATTCTAT 58.077 42.857 8.35 0.00 38.19 1.98
4921 6279 2.401583 AGCAATGCACGGACATTCTA 57.598 45.000 8.35 0.00 38.19 2.10
4922 6280 2.401583 TAGCAATGCACGGACATTCT 57.598 45.000 8.35 6.19 38.19 2.40
4923 6281 2.613595 TCATAGCAATGCACGGACATTC 59.386 45.455 8.35 0.04 38.19 2.67
4924 6282 2.642427 TCATAGCAATGCACGGACATT 58.358 42.857 8.35 0.00 40.90 2.71
4925 6283 2.330440 TCATAGCAATGCACGGACAT 57.670 45.000 8.35 0.00 32.76 3.06
4926 6284 2.330440 ATCATAGCAATGCACGGACA 57.670 45.000 8.35 0.00 32.76 4.02
4927 6285 4.273480 ACTTAATCATAGCAATGCACGGAC 59.727 41.667 8.35 0.00 32.76 4.79
4928 6286 4.273235 CACTTAATCATAGCAATGCACGGA 59.727 41.667 8.35 1.26 32.76 4.69
4929 6287 4.273235 TCACTTAATCATAGCAATGCACGG 59.727 41.667 8.35 0.00 32.76 4.94
4930 6288 5.200454 GTCACTTAATCATAGCAATGCACG 58.800 41.667 8.35 0.00 32.76 5.34
4931 6289 6.122850 TGTCACTTAATCATAGCAATGCAC 57.877 37.500 8.35 0.00 32.76 4.57
4932 6290 5.882000 ACTGTCACTTAATCATAGCAATGCA 59.118 36.000 8.35 0.00 32.76 3.96
4933 6291 6.369059 ACTGTCACTTAATCATAGCAATGC 57.631 37.500 0.00 0.00 32.76 3.56
4934 6292 6.765036 AGGACTGTCACTTAATCATAGCAATG 59.235 38.462 10.38 0.00 0.00 2.82
4935 6293 6.893583 AGGACTGTCACTTAATCATAGCAAT 58.106 36.000 10.38 0.00 0.00 3.56
4936 6294 6.299805 AGGACTGTCACTTAATCATAGCAA 57.700 37.500 10.38 0.00 0.00 3.91
4937 6295 5.939764 AGGACTGTCACTTAATCATAGCA 57.060 39.130 10.38 0.00 0.00 3.49
4938 6296 6.818644 TCAAAGGACTGTCACTTAATCATAGC 59.181 38.462 10.38 0.00 0.00 2.97
4939 6297 8.777865 TTCAAAGGACTGTCACTTAATCATAG 57.222 34.615 10.38 0.00 0.00 2.23
5036 6394 1.114627 CCCCTGATTTTAGCCCAAGC 58.885 55.000 0.00 0.00 40.32 4.01
5037 6395 1.780503 CCCCCTGATTTTAGCCCAAG 58.219 55.000 0.00 0.00 0.00 3.61
5054 6412 2.517919 CTCCTAGCCAATGCCCCC 59.482 66.667 0.00 0.00 38.69 5.40
5055 6413 2.517919 CCTCCTAGCCAATGCCCC 59.482 66.667 0.00 0.00 38.69 5.80
5056 6414 2.517919 CCCTCCTAGCCAATGCCC 59.482 66.667 0.00 0.00 38.69 5.36
5057 6415 2.517919 CCCCTCCTAGCCAATGCC 59.482 66.667 0.00 0.00 38.69 4.40
5058 6416 2.203408 GCCCCTCCTAGCCAATGC 60.203 66.667 0.00 0.00 37.95 3.56
5059 6417 0.033208 TTTGCCCCTCCTAGCCAATG 60.033 55.000 0.00 0.00 0.00 2.82
5060 6418 0.033109 GTTTGCCCCTCCTAGCCAAT 60.033 55.000 0.00 0.00 0.00 3.16
5061 6419 1.382629 GTTTGCCCCTCCTAGCCAA 59.617 57.895 0.00 0.00 0.00 4.52
5062 6420 1.431195 TTGTTTGCCCCTCCTAGCCA 61.431 55.000 0.00 0.00 0.00 4.75
5063 6421 0.251608 TTTGTTTGCCCCTCCTAGCC 60.252 55.000 0.00 0.00 0.00 3.93
5064 6422 1.627864 TTTTGTTTGCCCCTCCTAGC 58.372 50.000 0.00 0.00 0.00 3.42
5065 6423 3.193479 GTGATTTTGTTTGCCCCTCCTAG 59.807 47.826 0.00 0.00 0.00 3.02
5066 6424 3.161866 GTGATTTTGTTTGCCCCTCCTA 58.838 45.455 0.00 0.00 0.00 2.94
5067 6425 1.970640 GTGATTTTGTTTGCCCCTCCT 59.029 47.619 0.00 0.00 0.00 3.69
5068 6426 1.691434 TGTGATTTTGTTTGCCCCTCC 59.309 47.619 0.00 0.00 0.00 4.30
5069 6427 3.467374 TTGTGATTTTGTTTGCCCCTC 57.533 42.857 0.00 0.00 0.00 4.30
5070 6428 5.490159 CATATTGTGATTTTGTTTGCCCCT 58.510 37.500 0.00 0.00 0.00 4.79
5071 6429 4.094739 GCATATTGTGATTTTGTTTGCCCC 59.905 41.667 0.00 0.00 0.00 5.80
5072 6430 4.937015 AGCATATTGTGATTTTGTTTGCCC 59.063 37.500 0.00 0.00 0.00 5.36
5073 6431 5.638657 TCAGCATATTGTGATTTTGTTTGCC 59.361 36.000 0.00 0.00 0.00 4.52
5074 6432 6.709145 TCAGCATATTGTGATTTTGTTTGC 57.291 33.333 0.00 0.00 0.00 3.68
5102 6460 9.184523 CCTATGTATTTGACCCATTTTTCACTA 57.815 33.333 0.00 0.00 0.00 2.74
5103 6461 7.673926 ACCTATGTATTTGACCCATTTTTCACT 59.326 33.333 0.00 0.00 0.00 3.41
5104 6462 7.836842 ACCTATGTATTTGACCCATTTTTCAC 58.163 34.615 0.00 0.00 0.00 3.18
5105 6463 9.707957 ATACCTATGTATTTGACCCATTTTTCA 57.292 29.630 0.00 0.00 33.86 2.69
5112 6470 9.052365 TGCATATATACCTATGTATTTGACCCA 57.948 33.333 0.00 0.00 38.60 4.51
5113 6471 9.899661 TTGCATATATACCTATGTATTTGACCC 57.100 33.333 0.00 0.00 38.60 4.46
5125 6483 9.440773 CAGCTCAAAGAATTGCATATATACCTA 57.559 33.333 0.00 0.00 36.45 3.08
5126 6484 7.392673 CCAGCTCAAAGAATTGCATATATACCT 59.607 37.037 0.00 0.00 36.45 3.08
5127 6485 7.391554 TCCAGCTCAAAGAATTGCATATATACC 59.608 37.037 0.00 0.00 36.45 2.73
5128 6486 8.327941 TCCAGCTCAAAGAATTGCATATATAC 57.672 34.615 0.00 0.00 36.45 1.47
5129 6487 7.609146 CCTCCAGCTCAAAGAATTGCATATATA 59.391 37.037 0.00 0.00 36.45 0.86
5130 6488 6.433404 CCTCCAGCTCAAAGAATTGCATATAT 59.567 38.462 0.00 0.00 36.45 0.86
5131 6489 5.766670 CCTCCAGCTCAAAGAATTGCATATA 59.233 40.000 0.00 0.00 36.45 0.86
5132 6490 4.583489 CCTCCAGCTCAAAGAATTGCATAT 59.417 41.667 0.00 0.00 36.45 1.78
5133 6491 3.949754 CCTCCAGCTCAAAGAATTGCATA 59.050 43.478 0.00 0.00 36.45 3.14
5134 6492 2.758979 CCTCCAGCTCAAAGAATTGCAT 59.241 45.455 0.00 0.00 36.45 3.96
5135 6493 2.165167 CCTCCAGCTCAAAGAATTGCA 58.835 47.619 0.00 0.00 36.45 4.08
5136 6494 1.475682 CCCTCCAGCTCAAAGAATTGC 59.524 52.381 0.00 0.00 36.45 3.56
5137 6495 1.475682 GCCCTCCAGCTCAAAGAATTG 59.524 52.381 0.00 0.00 37.92 2.32
5138 6496 1.618074 GGCCCTCCAGCTCAAAGAATT 60.618 52.381 0.00 0.00 0.00 2.17
5139 6497 0.033699 GGCCCTCCAGCTCAAAGAAT 60.034 55.000 0.00 0.00 0.00 2.40
5140 6498 1.380302 GGCCCTCCAGCTCAAAGAA 59.620 57.895 0.00 0.00 0.00 2.52
5141 6499 1.847506 TGGCCCTCCAGCTCAAAGA 60.848 57.895 0.00 0.00 37.47 2.52
5142 6500 1.676967 GTGGCCCTCCAGCTCAAAG 60.677 63.158 0.00 0.00 44.48 2.77
5143 6501 2.436109 GTGGCCCTCCAGCTCAAA 59.564 61.111 0.00 0.00 44.48 2.69
5163 6521 4.783501 CATGGGGGCCAACCTGGG 62.784 72.222 15.84 3.09 38.19 4.45
5164 6522 3.236769 TTCATGGGGGCCAACCTGG 62.237 63.158 15.84 8.58 41.55 4.45
5165 6523 1.683365 CTTCATGGGGGCCAACCTG 60.683 63.158 15.84 11.47 36.95 4.00
5166 6524 2.772924 CTTCATGGGGGCCAACCT 59.227 61.111 15.84 0.48 36.95 3.50
5167 6525 3.076916 GCTTCATGGGGGCCAACC 61.077 66.667 4.39 6.97 36.95 3.77
5168 6526 2.037847 AGCTTCATGGGGGCCAAC 59.962 61.111 4.39 0.00 36.95 3.77
5169 6527 2.360191 GAGCTTCATGGGGGCCAA 59.640 61.111 4.39 0.00 36.95 4.52
5170 6528 3.743017 GGAGCTTCATGGGGGCCA 61.743 66.667 4.39 0.00 38.19 5.36
5171 6529 4.883354 CGGAGCTTCATGGGGGCC 62.883 72.222 0.00 0.00 0.00 5.80
5184 6542 2.360350 ATTGGTGCAGTGGCGGAG 60.360 61.111 0.00 0.00 45.35 4.63
5185 6543 2.359850 GATTGGTGCAGTGGCGGA 60.360 61.111 0.00 0.00 45.35 5.54
5186 6544 3.803082 CGATTGGTGCAGTGGCGG 61.803 66.667 0.00 0.00 45.35 6.13
5187 6545 4.465512 GCGATTGGTGCAGTGGCG 62.466 66.667 0.00 0.00 45.35 5.69
5188 6546 4.120331 GGCGATTGGTGCAGTGGC 62.120 66.667 0.00 0.00 41.68 5.01
5189 6547 2.360350 AGGCGATTGGTGCAGTGG 60.360 61.111 0.00 0.00 0.00 4.00
5190 6548 2.872557 CAGGCGATTGGTGCAGTG 59.127 61.111 0.00 0.00 0.00 3.66
5191 6549 3.058160 GCAGGCGATTGGTGCAGT 61.058 61.111 0.00 0.00 37.16 4.40
5192 6550 3.057548 TGCAGGCGATTGGTGCAG 61.058 61.111 0.00 0.00 42.20 4.41
5194 6552 0.390209 AAAATGCAGGCGATTGGTGC 60.390 50.000 0.00 0.00 37.73 5.01
5195 6553 2.083167 AAAAATGCAGGCGATTGGTG 57.917 45.000 0.00 0.00 0.00 4.17
5227 6585 5.711976 GGGAGGAAGAAGATGATCACAAAAA 59.288 40.000 0.00 0.00 0.00 1.94
5271 6630 0.029163 TAGGAGGATGGGCCATTGGA 60.029 55.000 22.20 0.38 40.02 3.53
5276 6635 0.399091 CAGAGTAGGAGGATGGGCCA 60.399 60.000 9.61 9.61 40.02 5.36
5323 6682 3.501349 AGAAGGCAGCTCGGATAGATTA 58.499 45.455 0.00 0.00 0.00 1.75
5330 6689 1.599606 GACAGAGAAGGCAGCTCGGA 61.600 60.000 12.14 0.00 37.46 4.55
5337 6696 2.353109 CGATGAACTGACAGAGAAGGCA 60.353 50.000 10.08 0.00 0.00 4.75
5346 6705 0.605319 GGGGCAACGATGAACTGACA 60.605 55.000 0.00 0.00 37.60 3.58
5440 6799 3.002553 GCCATTGCCAAGAACTTTTGTTG 59.997 43.478 0.00 0.00 43.66 3.33
5443 6802 2.836262 TGCCATTGCCAAGAACTTTTG 58.164 42.857 0.00 0.00 36.33 2.44
5444 6803 3.775261 ATGCCATTGCCAAGAACTTTT 57.225 38.095 0.00 0.00 36.33 2.27
5542 6908 1.671742 GGGTGACTCTTGGCTTCGA 59.328 57.895 0.00 0.00 0.00 3.71
5576 6942 9.832445 TGATCATGTTTCCCTTATAAACTAGAC 57.168 33.333 0.00 0.00 37.64 2.59
5644 7010 4.439974 CCTTTGCTACTTGTGCAGTTTTCA 60.440 41.667 0.00 0.00 41.71 2.69
5653 7019 7.259290 TCTTTTCTAACCTTTGCTACTTGTG 57.741 36.000 0.00 0.00 0.00 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.