Multiple sequence alignment - TraesCS1B01G202400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G202400 chr1B 100.000 5337 0 0 1 5337 363481628 363476292 0.000000e+00 9856.0
1 TraesCS1B01G202400 chr1A 89.662 2631 195 49 2743 5335 321112889 321115480 0.000000e+00 3280.0
2 TraesCS1B01G202400 chr1A 93.383 1889 72 20 264 2115 321109774 321111646 0.000000e+00 2747.0
3 TraesCS1B01G202400 chr1A 90.821 207 10 7 2501 2706 321112696 321112894 8.810000e-68 268.0
4 TraesCS1B01G202400 chr1D 93.162 1711 92 18 3635 5337 250925190 250926883 0.000000e+00 2488.0
5 TraesCS1B01G202400 chr1D 95.691 1462 34 7 675 2109 250922154 250923613 0.000000e+00 2324.0
6 TraesCS1B01G202400 chr1D 87.748 1110 112 17 853 1954 29692879 29691786 0.000000e+00 1275.0
7 TraesCS1B01G202400 chr1D 89.175 970 95 7 982 1951 30025634 30026593 0.000000e+00 1201.0
8 TraesCS1B01G202400 chr1D 91.864 762 37 6 2813 3550 250924316 250925076 0.000000e+00 1040.0
9 TraesCS1B01G202400 chr1D 88.084 663 48 13 1 649 250921518 250922163 0.000000e+00 758.0
10 TraesCS1B01G202400 chr1D 87.281 629 45 15 2111 2710 250923652 250924274 0.000000e+00 686.0
11 TraesCS1B01G202400 chr1D 83.062 614 103 1 3667 4280 29690160 29689548 1.680000e-154 556.0
12 TraesCS1B01G202400 chr1D 97.917 48 1 0 2748 2795 250924269 250924316 3.430000e-12 84.2
13 TraesCS1B01G202400 chr3D 88.455 1100 98 17 867 1955 41784538 41783457 0.000000e+00 1301.0
14 TraesCS1B01G202400 chr3D 84.105 648 103 0 3666 4313 41783072 41782425 1.260000e-175 627.0
15 TraesCS1B01G202400 chr3B 88.402 1095 103 16 867 1955 66170774 66171850 0.000000e+00 1297.0
16 TraesCS1B01G202400 chr3B 84.308 650 98 3 3666 4313 66172884 66173531 2.710000e-177 632.0
17 TraesCS1B01G202400 chr3A 88.192 1084 105 14 868 1946 53738518 53739583 0.000000e+00 1271.0
18 TraesCS1B01G202400 chr3A 79.970 659 113 10 3655 4313 53740723 53741362 8.090000e-128 468.0
19 TraesCS1B01G202400 chr2D 86.243 1134 112 17 858 1975 589318687 589317582 0.000000e+00 1190.0
20 TraesCS1B01G202400 chr2D 83.491 636 105 0 3666 4301 589316766 589316131 1.280000e-165 593.0
21 TraesCS1B01G202400 chr2D 79.437 355 64 8 84 432 529360778 529361129 5.340000e-60 243.0
22 TraesCS1B01G202400 chr2A 85.538 1134 121 17 858 1975 723652610 723651504 0.000000e+00 1146.0
23 TraesCS1B01G202400 chr2A 84.462 650 101 0 3664 4313 723650474 723649825 4.510000e-180 641.0
24 TraesCS1B01G202400 chr2B 84.992 653 98 0 3661 4313 712959138 712958486 0.000000e+00 664.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G202400 chr1B 363476292 363481628 5336 True 9856.000000 9856 100.000000 1 5337 1 chr1B.!!$R1 5336
1 TraesCS1B01G202400 chr1A 321109774 321115480 5706 False 2098.333333 3280 91.288667 264 5335 3 chr1A.!!$F1 5071
2 TraesCS1B01G202400 chr1D 250921518 250926883 5365 False 1230.033333 2488 92.333167 1 5337 6 chr1D.!!$F2 5336
3 TraesCS1B01G202400 chr1D 30025634 30026593 959 False 1201.000000 1201 89.175000 982 1951 1 chr1D.!!$F1 969
4 TraesCS1B01G202400 chr1D 29689548 29692879 3331 True 915.500000 1275 85.405000 853 4280 2 chr1D.!!$R1 3427
5 TraesCS1B01G202400 chr3D 41782425 41784538 2113 True 964.000000 1301 86.280000 867 4313 2 chr3D.!!$R1 3446
6 TraesCS1B01G202400 chr3B 66170774 66173531 2757 False 964.500000 1297 86.355000 867 4313 2 chr3B.!!$F1 3446
7 TraesCS1B01G202400 chr3A 53738518 53741362 2844 False 869.500000 1271 84.081000 868 4313 2 chr3A.!!$F1 3445
8 TraesCS1B01G202400 chr2D 589316131 589318687 2556 True 891.500000 1190 84.867000 858 4301 2 chr2D.!!$R1 3443
9 TraesCS1B01G202400 chr2A 723649825 723652610 2785 True 893.500000 1146 85.000000 858 4313 2 chr2A.!!$R1 3455
10 TraesCS1B01G202400 chr2B 712958486 712959138 652 True 664.000000 664 84.992000 3661 4313 1 chr2B.!!$R1 652

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
455 469 0.111061 ATTGCAGGACTCACTGGCAA 59.889 50.0 0.00 0.00 38.90 4.52 F
2136 2485 1.026182 TTAATGCCTGGCGAGTGCAG 61.026 55.0 14.98 0.00 45.35 4.41 F
2797 4524 0.101040 TCCTTACGTACCGGAATGCG 59.899 55.0 9.46 4.33 0.00 4.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2303 3395 0.179181 CATGTGCTGGACATTGACGC 60.179 55.000 12.37 0.0 43.2 5.19 R
2947 4674 1.080093 GTTCATGGTCGAGGCGTGA 60.080 57.895 0.00 0.0 0.0 4.35 R
4365 7263 0.681733 CCTGTGCAGCCGGTAGATAT 59.318 55.000 1.90 0.0 0.0 1.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 0.388520 CGGAGCGACTGAACATGACA 60.389 55.000 0.00 0.00 0.00 3.58
65 66 8.587608 TGACCTCATGAAAAGCAAAATAATTCT 58.412 29.630 0.00 0.00 0.00 2.40
110 124 6.379703 TCAAAGGATTGAAAGGAAGAACACAA 59.620 34.615 0.00 0.00 42.47 3.33
113 127 5.767168 AGGATTGAAAGGAAGAACACAAGAG 59.233 40.000 0.00 0.00 0.00 2.85
133 147 3.018149 AGGACGCGAAAGAGAAGAGTAT 58.982 45.455 15.93 0.00 33.96 2.12
142 156 6.146347 GCGAAAGAGAAGAGTATTGAACAGTT 59.854 38.462 0.00 0.00 0.00 3.16
144 158 9.193133 CGAAAGAGAAGAGTATTGAACAGTTAA 57.807 33.333 0.00 0.00 0.00 2.01
172 186 2.158608 ACAAGTGGACCAAGGAAGAAGG 60.159 50.000 0.00 0.00 0.00 3.46
174 188 2.986050 AGTGGACCAAGGAAGAAGGTA 58.014 47.619 0.00 0.00 35.36 3.08
194 208 4.757149 GGTAATCAGTAACATGGATGGCTC 59.243 45.833 0.00 0.00 0.00 4.70
199 213 1.593006 GTAACATGGATGGCTCGAACG 59.407 52.381 0.00 0.00 0.00 3.95
219 233 5.237236 ACGGGGTTGAAGAATAAAGAAGA 57.763 39.130 0.00 0.00 0.00 2.87
259 273 5.539048 ACGATGCACCATACTTATAGGAAC 58.461 41.667 0.00 0.00 0.00 3.62
260 274 5.069914 ACGATGCACCATACTTATAGGAACA 59.930 40.000 0.00 0.00 0.00 3.18
261 275 5.635280 CGATGCACCATACTTATAGGAACAG 59.365 44.000 0.00 0.00 0.00 3.16
262 276 5.290493 TGCACCATACTTATAGGAACAGG 57.710 43.478 0.00 0.00 0.00 4.00
346 360 6.662865 TTGAGAGGGTTTCAAATTTGCATA 57.337 33.333 13.54 0.00 31.98 3.14
366 380 9.445878 TTGCATATATTTTTCAGCCAATTTTCA 57.554 25.926 0.00 0.00 0.00 2.69
376 390 4.057432 CAGCCAATTTTCACCGAAACAAT 58.943 39.130 0.00 0.00 30.83 2.71
390 404 5.008217 ACCGAAACAATTTTTCAGATCACGA 59.992 36.000 0.00 0.00 0.00 4.35
392 406 5.906838 CGAAACAATTTTTCAGATCACGACA 59.093 36.000 0.00 0.00 0.00 4.35
394 408 5.749596 ACAATTTTTCAGATCACGACACA 57.250 34.783 0.00 0.00 0.00 3.72
406 420 0.885879 ACGACACAGATCAACGGCTA 59.114 50.000 0.00 0.00 0.00 3.93
446 460 3.411517 CCCCGGGATTGCAGGACT 61.412 66.667 26.32 0.00 0.00 3.85
448 462 2.669133 CCCGGGATTGCAGGACTCA 61.669 63.158 18.48 0.00 0.00 3.41
449 463 1.450312 CCGGGATTGCAGGACTCAC 60.450 63.158 0.00 0.00 0.00 3.51
450 464 1.599047 CGGGATTGCAGGACTCACT 59.401 57.895 0.00 0.00 0.00 3.41
451 465 0.742281 CGGGATTGCAGGACTCACTG 60.742 60.000 0.00 0.00 41.41 3.66
452 466 0.393537 GGGATTGCAGGACTCACTGG 60.394 60.000 0.00 0.00 38.90 4.00
453 467 1.028868 GGATTGCAGGACTCACTGGC 61.029 60.000 0.00 0.00 38.90 4.85
454 468 0.321919 GATTGCAGGACTCACTGGCA 60.322 55.000 0.00 0.00 38.90 4.92
455 469 0.111061 ATTGCAGGACTCACTGGCAA 59.889 50.000 0.00 0.00 38.90 4.52
503 520 2.818130 TGCATTTGGCTTTGACCTTC 57.182 45.000 0.00 0.00 45.15 3.46
511 528 2.026262 TGGCTTTGACCTTCCATACCTC 60.026 50.000 0.00 0.00 0.00 3.85
644 662 5.966742 ACAGTCAAGCTTTAGGAAAATCC 57.033 39.130 0.00 0.00 36.58 3.01
645 663 5.385198 ACAGTCAAGCTTTAGGAAAATCCA 58.615 37.500 0.00 0.00 39.61 3.41
646 664 6.012745 ACAGTCAAGCTTTAGGAAAATCCAT 58.987 36.000 0.00 0.00 39.61 3.41
647 665 6.151817 ACAGTCAAGCTTTAGGAAAATCCATC 59.848 38.462 0.00 0.00 39.61 3.51
648 666 6.376581 CAGTCAAGCTTTAGGAAAATCCATCT 59.623 38.462 0.00 0.00 39.61 2.90
649 667 6.376581 AGTCAAGCTTTAGGAAAATCCATCTG 59.623 38.462 0.00 0.00 39.61 2.90
650 668 6.151817 GTCAAGCTTTAGGAAAATCCATCTGT 59.848 38.462 0.00 0.00 39.61 3.41
651 669 6.721208 TCAAGCTTTAGGAAAATCCATCTGTT 59.279 34.615 0.00 0.00 39.61 3.16
652 670 7.233348 TCAAGCTTTAGGAAAATCCATCTGTTT 59.767 33.333 0.00 0.00 39.61 2.83
653 671 6.928520 AGCTTTAGGAAAATCCATCTGTTTG 58.071 36.000 0.00 0.00 39.61 2.93
654 672 6.721208 AGCTTTAGGAAAATCCATCTGTTTGA 59.279 34.615 0.00 0.00 39.61 2.69
655 673 7.398332 AGCTTTAGGAAAATCCATCTGTTTGAT 59.602 33.333 0.00 0.00 39.61 2.57
656 674 8.037166 GCTTTAGGAAAATCCATCTGTTTGATT 58.963 33.333 0.00 0.00 39.61 2.57
657 675 9.933723 CTTTAGGAAAATCCATCTGTTTGATTT 57.066 29.630 0.00 0.00 39.61 2.17
712 764 1.571773 ATACACCAGCCCTTCCCACC 61.572 60.000 0.00 0.00 0.00 4.61
713 765 4.366684 CACCAGCCCTTCCCACCC 62.367 72.222 0.00 0.00 0.00 4.61
879 955 1.286305 ATAAACCCGGCACCCTCCAT 61.286 55.000 0.00 0.00 0.00 3.41
1007 1093 1.407618 CGAGTATCCGTCAATGGTGGA 59.592 52.381 0.00 0.00 35.96 4.02
2037 2175 4.699735 ACAGATCACCAACGCAATATTTCA 59.300 37.500 0.00 0.00 0.00 2.69
2078 2245 4.846779 AAGGCAAGCGATTTACTTTTGA 57.153 36.364 0.00 0.00 0.00 2.69
2079 2246 4.160736 AGGCAAGCGATTTACTTTTGAC 57.839 40.909 0.00 0.00 0.00 3.18
2080 2247 3.821033 AGGCAAGCGATTTACTTTTGACT 59.179 39.130 0.00 0.00 32.45 3.41
2136 2485 1.026182 TTAATGCCTGGCGAGTGCAG 61.026 55.000 14.98 0.00 45.35 4.41
2161 2901 7.755822 AGGCGATATCTGACGATTAAATAAGAC 59.244 37.037 0.34 0.00 0.00 3.01
2179 2919 4.931027 AGACACTCCTACTCCAGTAAGA 57.069 45.455 0.00 0.00 0.00 2.10
2180 2920 5.459982 AGACACTCCTACTCCAGTAAGAT 57.540 43.478 0.00 0.00 0.00 2.40
2212 2963 4.665142 CGATCGAGCTGTTCTTCAGTTTTG 60.665 45.833 10.26 0.00 45.23 2.44
2230 2981 6.866770 CAGTTTTGATCGTCCAGAAGTACTAA 59.133 38.462 0.00 0.00 0.00 2.24
2344 3436 5.736813 TGGTGTAATAAACATCCGCTAGTT 58.263 37.500 0.00 0.00 38.56 2.24
2346 3438 5.583457 GGTGTAATAAACATCCGCTAGTTGT 59.417 40.000 0.00 0.00 41.10 3.32
2347 3439 6.456449 GGTGTAATAAACATCCGCTAGTTGTG 60.456 42.308 0.00 0.00 41.10 3.33
2398 3817 3.492421 TTCATCGAAATTCCAGCAAGC 57.508 42.857 0.00 0.00 0.00 4.01
2411 3830 9.971922 AAATTCCAGCAAGCACTAATATATTTC 57.028 29.630 2.68 0.00 0.00 2.17
2434 3853 7.971183 TCTGGCAAATAAAATTAACCCAAAC 57.029 32.000 0.00 0.00 0.00 2.93
2439 4162 9.008965 GGCAAATAAAATTAACCCAAACAGAAT 57.991 29.630 0.00 0.00 0.00 2.40
2445 4168 8.445275 AAAATTAACCCAAACAGAATCCAAAC 57.555 30.769 0.00 0.00 0.00 2.93
2453 4176 6.586082 CCCAAACAGAATCCAAACTTTTATCG 59.414 38.462 0.00 0.00 0.00 2.92
2465 4188 9.632807 TCCAAACTTTTATCGGATTATTTGTTG 57.367 29.630 0.00 0.00 0.00 3.33
2482 4205 2.978010 GTGTGTTGGCCCGAGGTG 60.978 66.667 0.00 0.00 0.00 4.00
2486 4209 3.319198 GTTGGCCCGAGGTGAGGA 61.319 66.667 0.00 0.00 0.00 3.71
2560 4284 1.877576 CGTAGCTGGCAGACACCTCA 61.878 60.000 20.86 0.00 0.00 3.86
2664 4391 1.237285 ACTACGGGCAAGCTGCTTTG 61.237 55.000 13.10 9.54 44.28 2.77
2678 4405 0.310543 GCTTTGACGCATGAACCACA 59.689 50.000 0.00 0.00 0.00 4.17
2693 4420 3.819564 ACCACACATGACGTAGCATAT 57.180 42.857 0.00 0.00 0.00 1.78
2694 4421 3.457234 ACCACACATGACGTAGCATATG 58.543 45.455 0.00 0.00 0.00 1.78
2695 4422 2.221749 CCACACATGACGTAGCATATGC 59.778 50.000 20.36 20.36 42.49 3.14
2697 4424 3.495753 CACACATGACGTAGCATATGCAT 59.504 43.478 28.62 16.04 45.16 3.96
2699 4426 4.686091 ACACATGACGTAGCATATGCATAC 59.314 41.667 28.62 22.98 45.16 2.39
2700 4427 4.685628 CACATGACGTAGCATATGCATACA 59.314 41.667 28.62 19.31 45.16 2.29
2702 4429 5.934043 ACATGACGTAGCATATGCATACAAT 59.066 36.000 28.62 16.78 45.16 2.71
2703 4430 7.063308 CACATGACGTAGCATATGCATACAATA 59.937 37.037 28.62 9.09 45.16 1.90
2704 4431 7.276438 ACATGACGTAGCATATGCATACAATAG 59.724 37.037 28.62 14.77 45.16 1.73
2705 4432 6.099341 TGACGTAGCATATGCATACAATAGG 58.901 40.000 28.62 17.58 45.16 2.57
2706 4433 6.037786 ACGTAGCATATGCATACAATAGGT 57.962 37.500 28.62 18.16 45.16 3.08
2707 4434 7.094118 TGACGTAGCATATGCATACAATAGGTA 60.094 37.037 28.62 6.20 45.16 3.08
2708 4435 7.033791 ACGTAGCATATGCATACAATAGGTAC 58.966 38.462 28.62 16.08 45.16 3.34
2709 4436 6.196538 CGTAGCATATGCATACAATAGGTACG 59.803 42.308 28.62 24.77 45.16 3.67
2710 4437 4.870426 AGCATATGCATACAATAGGTACGC 59.130 41.667 28.62 0.00 41.40 4.42
2713 4440 3.528597 TGCATACAATAGGTACGCACA 57.471 42.857 0.00 0.00 45.35 4.57
2714 4441 3.863041 TGCATACAATAGGTACGCACAA 58.137 40.909 0.00 0.00 45.35 3.33
2715 4442 4.447290 TGCATACAATAGGTACGCACAAT 58.553 39.130 0.00 0.00 45.35 2.71
2716 4443 5.602628 TGCATACAATAGGTACGCACAATA 58.397 37.500 0.00 0.00 45.35 1.90
2717 4444 5.694458 TGCATACAATAGGTACGCACAATAG 59.306 40.000 0.00 0.00 45.35 1.73
2718 4445 5.120208 GCATACAATAGGTACGCACAATAGG 59.880 44.000 0.00 0.00 40.74 2.57
2719 4446 4.748277 ACAATAGGTACGCACAATAGGT 57.252 40.909 0.00 0.00 0.00 3.08
2720 4447 5.857471 ACAATAGGTACGCACAATAGGTA 57.143 39.130 0.00 0.00 0.00 3.08
2721 4448 5.594926 ACAATAGGTACGCACAATAGGTAC 58.405 41.667 0.00 0.00 36.63 3.34
2722 4449 2.857592 AGGTACGCACAATAGGTACG 57.142 50.000 0.00 0.00 42.06 3.67
2727 4454 1.999048 CGCACAATAGGTACGTTGGA 58.001 50.000 0.00 0.00 34.17 3.53
2728 4455 1.657094 CGCACAATAGGTACGTTGGAC 59.343 52.381 0.00 0.00 34.17 4.02
2729 4456 2.673043 CGCACAATAGGTACGTTGGACT 60.673 50.000 0.00 0.00 34.17 3.85
2730 4457 3.332034 GCACAATAGGTACGTTGGACTT 58.668 45.455 0.00 0.00 34.17 3.01
2731 4458 3.749609 GCACAATAGGTACGTTGGACTTT 59.250 43.478 0.00 0.00 34.17 2.66
2732 4459 4.214758 GCACAATAGGTACGTTGGACTTTT 59.785 41.667 0.00 0.00 34.17 2.27
2733 4460 5.278120 GCACAATAGGTACGTTGGACTTTTT 60.278 40.000 0.00 0.00 34.17 1.94
2797 4524 0.101040 TCCTTACGTACCGGAATGCG 59.899 55.000 9.46 4.33 0.00 4.73
2799 4526 1.474017 CTTACGTACCGGAATGCGAG 58.526 55.000 9.46 0.00 0.00 5.03
2803 4530 3.078196 TACCGGAATGCGAGCCCA 61.078 61.111 9.46 0.00 0.00 5.36
2804 4531 2.439960 TACCGGAATGCGAGCCCAT 61.440 57.895 9.46 0.00 0.00 4.00
2877 4604 4.079850 AGCACCGAGAGCTGGCAG 62.080 66.667 10.94 10.94 41.61 4.85
2941 4668 1.543871 CCTTCGTTCGAGGGGGAAAAA 60.544 52.381 14.16 0.00 0.00 1.94
2943 4670 0.469070 TCGTTCGAGGGGGAAAAACA 59.531 50.000 0.00 0.00 0.00 2.83
2947 4674 1.228033 CGAGGGGGAAAAACACCGT 60.228 57.895 0.00 0.00 44.45 4.83
2998 4775 2.203070 GATCGGTGCAGGCGGAAT 60.203 61.111 0.00 0.00 0.00 3.01
3073 4859 5.948992 ATCTGCTTGTACTTTTCAGTTCC 57.051 39.130 0.00 0.00 34.06 3.62
3080 4866 4.204012 TGTACTTTTCAGTTCCCACTTGG 58.796 43.478 0.00 0.00 34.06 3.61
3084 4870 1.961793 TTCAGTTCCCACTTGGTTCG 58.038 50.000 0.00 0.00 34.77 3.95
3122 4916 2.202878 CACCGTGCCCCTACATCG 60.203 66.667 0.00 0.00 0.00 3.84
3178 4973 2.032030 AGAACCAAATCACGCACGAAAG 60.032 45.455 0.00 0.00 0.00 2.62
3311 5111 3.318275 GTCTCCTTCCCAAGTGAAAAACC 59.682 47.826 0.00 0.00 0.00 3.27
3324 5136 3.951680 GTGAAAAACCCTCAACCTCTGAA 59.048 43.478 0.00 0.00 32.17 3.02
3424 5240 2.916502 TTCTGCGGTTGAGTGCACGT 62.917 55.000 12.01 0.00 35.90 4.49
3478 5294 2.033194 GGACCGGCACAGCACTAAC 61.033 63.158 0.00 0.00 0.00 2.34
3503 5319 1.065551 GCGAAATTGGACACCTATGCC 59.934 52.381 0.00 0.00 0.00 4.40
3507 5323 0.748005 ATTGGACACCTATGCCACGC 60.748 55.000 0.00 0.00 33.45 5.34
3521 5340 0.526524 CCACGCTCTACTGCTACTGC 60.527 60.000 0.00 0.00 40.20 4.40
3550 5369 3.261580 CATGACACCTGTTTGCGATCTA 58.738 45.455 0.00 0.00 0.00 1.98
3551 5370 3.610040 TGACACCTGTTTGCGATCTAT 57.390 42.857 0.00 0.00 0.00 1.98
3552 5371 4.729227 TGACACCTGTTTGCGATCTATA 57.271 40.909 0.00 0.00 0.00 1.31
3554 5373 6.399639 TGACACCTGTTTGCGATCTATATA 57.600 37.500 0.00 0.00 0.00 0.86
3609 5478 6.061441 TGTATGACACCTGTTTGTGATTTCT 58.939 36.000 0.00 0.00 39.57 2.52
3926 6824 4.409218 GCGTCGTCGGTGGCTACA 62.409 66.667 1.52 0.00 37.56 2.74
4018 6916 4.353437 GACACGTTCCGGCCGTCT 62.353 66.667 26.12 5.13 36.17 4.18
4060 6958 2.597510 GCTGCCGGGGTTGACTTT 60.598 61.111 2.18 0.00 0.00 2.66
4084 6982 1.518903 GCGGCTGCTTTGAGTTCCTT 61.519 55.000 11.21 0.00 38.39 3.36
4102 7000 3.677648 CCGTTCGGGTCTGGTCGT 61.678 66.667 3.04 0.00 0.00 4.34
4313 7211 1.403647 CCTTGGTCGCTGACGTTGATA 60.404 52.381 0.00 0.00 41.18 2.15
4315 7213 2.665649 TGGTCGCTGACGTTGATATT 57.334 45.000 0.00 0.00 41.18 1.28
4316 7214 3.786516 TGGTCGCTGACGTTGATATTA 57.213 42.857 0.00 0.00 41.18 0.98
4345 7243 3.049912 GCGTCAAGCGTGATATCATACA 58.950 45.455 9.02 0.00 43.66 2.29
4346 7244 3.675225 GCGTCAAGCGTGATATCATACAT 59.325 43.478 9.02 0.00 43.66 2.29
4351 7249 4.652175 AGCGTGATATCATACATTTGCG 57.348 40.909 9.02 6.23 0.00 4.85
4391 7289 2.113986 GGCTGCACAGGGTGAAGT 59.886 61.111 0.50 0.00 41.08 3.01
4475 7373 9.723447 TTTTGTTGTTGTTTTTCTTCTTTTTCC 57.277 25.926 0.00 0.00 0.00 3.13
4492 7391 9.762933 TTCTTTTTCCTGTCTTTTGAATTATGG 57.237 29.630 0.00 0.00 0.00 2.74
4498 7397 7.685481 TCCTGTCTTTTGAATTATGGTACTGA 58.315 34.615 0.00 0.00 0.00 3.41
4499 7398 7.824289 TCCTGTCTTTTGAATTATGGTACTGAG 59.176 37.037 0.00 0.00 0.00 3.35
4622 7521 4.274950 CCGTATTGTTTGAGACTTGTTGGT 59.725 41.667 0.00 0.00 0.00 3.67
4707 7607 7.707035 TCTCCTTTTTCTTATCTCATAAGCGTC 59.293 37.037 0.00 0.00 41.52 5.19
4752 7653 1.017387 GCATGGATTCGAACTCCACC 58.983 55.000 23.07 16.27 45.27 4.61
4783 7684 1.234821 TGCTTGGGTACTTCAAAGCG 58.765 50.000 13.61 0.00 0.00 4.68
4788 7689 1.414897 GGTACTTCAAAGCGCGTCG 59.585 57.895 8.43 0.00 0.00 5.12
4886 7787 2.095059 GTCCCTAGTGTCGAAAACGCTA 60.095 50.000 0.00 0.00 46.85 4.26
4887 7788 2.756760 TCCCTAGTGTCGAAAACGCTAT 59.243 45.455 0.00 0.00 46.95 2.97
4888 7789 3.194116 TCCCTAGTGTCGAAAACGCTATT 59.806 43.478 0.00 0.00 46.95 1.73
4889 7790 3.306166 CCCTAGTGTCGAAAACGCTATTG 59.694 47.826 0.00 0.00 46.95 1.90
4890 7791 3.924686 CCTAGTGTCGAAAACGCTATTGT 59.075 43.478 0.00 0.00 46.95 2.71
4891 7792 5.097529 CCTAGTGTCGAAAACGCTATTGTA 58.902 41.667 0.00 0.00 46.95 2.41
4950 7851 5.374080 CGCACAACTACTCAACTATGTTTG 58.626 41.667 0.00 0.00 0.00 2.93
4996 7897 6.870769 AGCTAGTTATTCTTTACTAACGCCA 58.129 36.000 0.00 0.00 33.93 5.69
5029 7933 7.921786 TTGACAGTAATGCAAATAGCTAGTT 57.078 32.000 0.00 0.00 45.94 2.24
5032 7936 8.236586 TGACAGTAATGCAAATAGCTAGTTTTG 58.763 33.333 13.28 13.28 45.94 2.44
5098 8002 2.352814 CCTTCCACAGTTCGTACAGGAG 60.353 54.545 0.00 0.00 0.00 3.69
5138 8042 6.382869 AATCTAGGCATTAATGTGACTTGC 57.617 37.500 16.61 1.93 38.69 4.01
5139 8043 3.871006 TCTAGGCATTAATGTGACTTGCG 59.129 43.478 16.61 6.02 38.69 4.85
5140 8044 2.710377 AGGCATTAATGTGACTTGCGA 58.290 42.857 16.61 0.00 32.09 5.10
5141 8045 2.420022 AGGCATTAATGTGACTTGCGAC 59.580 45.455 16.61 0.00 32.09 5.19
5142 8046 2.420022 GGCATTAATGTGACTTGCGACT 59.580 45.455 16.61 0.00 34.17 4.18
5143 8047 3.119849 GGCATTAATGTGACTTGCGACTT 60.120 43.478 16.61 0.00 34.17 3.01
5144 8048 3.848019 GCATTAATGTGACTTGCGACTTG 59.152 43.478 16.61 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 5.067544 TCAATTGAGCAGTTTGTCATGTTCA 59.932 36.000 3.38 0.00 35.25 3.18
27 28 4.401022 TCATGAGGTCAATTGAGCAGTTT 58.599 39.130 32.68 16.79 44.42 2.66
65 66 6.971527 TTGATCGCGTATTTCTTTTCCTTA 57.028 33.333 5.77 0.00 0.00 2.69
72 77 5.584649 TCAATCCTTTGATCGCGTATTTCTT 59.415 36.000 5.77 0.00 36.94 2.52
82 96 6.072508 TGTTCTTCCTTTCAATCCTTTGATCG 60.073 38.462 0.00 0.00 41.38 3.69
110 124 1.470890 CTCTTCTCTTTCGCGTCCTCT 59.529 52.381 5.77 0.00 0.00 3.69
113 127 2.915738 TACTCTTCTCTTTCGCGTCC 57.084 50.000 5.77 0.00 0.00 4.79
133 147 5.124776 CACTTGTTCCACCTTAACTGTTCAA 59.875 40.000 0.00 0.00 0.00 2.69
142 156 2.128535 TGGTCCACTTGTTCCACCTTA 58.871 47.619 0.00 0.00 0.00 2.69
144 158 0.923358 TTGGTCCACTTGTTCCACCT 59.077 50.000 0.00 0.00 0.00 4.00
172 186 4.449068 CGAGCCATCCATGTTACTGATTAC 59.551 45.833 0.00 0.00 0.00 1.89
174 188 3.134623 TCGAGCCATCCATGTTACTGATT 59.865 43.478 0.00 0.00 0.00 2.57
194 208 3.998341 TCTTTATTCTTCAACCCCGTTCG 59.002 43.478 0.00 0.00 0.00 3.95
199 213 8.585018 TCAATTTCTTCTTTATTCTTCAACCCC 58.415 33.333 0.00 0.00 0.00 4.95
219 233 4.380867 GCATCGTCCCTTCATGTTCAATTT 60.381 41.667 0.00 0.00 0.00 1.82
259 273 0.886563 ACCGTTCTTCTACGTCCCTG 59.113 55.000 0.00 0.00 39.81 4.45
260 274 1.271656 CAACCGTTCTTCTACGTCCCT 59.728 52.381 0.00 0.00 39.81 4.20
261 275 1.706443 CAACCGTTCTTCTACGTCCC 58.294 55.000 0.00 0.00 39.81 4.46
262 276 1.066136 GCAACCGTTCTTCTACGTCC 58.934 55.000 0.00 0.00 39.81 4.79
346 360 6.696411 TCGGTGAAAATTGGCTGAAAAATAT 58.304 32.000 0.00 0.00 0.00 1.28
353 367 2.690497 TGTTTCGGTGAAAATTGGCTGA 59.310 40.909 0.00 0.00 33.14 4.26
355 369 3.810310 TTGTTTCGGTGAAAATTGGCT 57.190 38.095 0.00 0.00 33.14 4.75
365 379 5.115472 CGTGATCTGAAAAATTGTTTCGGTG 59.885 40.000 7.80 0.00 36.46 4.94
366 380 5.008217 TCGTGATCTGAAAAATTGTTTCGGT 59.992 36.000 7.80 0.00 36.46 4.69
376 390 5.296748 TGATCTGTGTCGTGATCTGAAAAA 58.703 37.500 0.00 0.00 39.63 1.94
390 404 3.243101 CGTCTATAGCCGTTGATCTGTGT 60.243 47.826 0.00 0.00 0.00 3.72
392 406 2.293677 CCGTCTATAGCCGTTGATCTGT 59.706 50.000 2.15 0.00 0.00 3.41
394 408 2.860009 TCCGTCTATAGCCGTTGATCT 58.140 47.619 2.15 0.00 0.00 2.75
406 420 1.068083 CACCTGCGCATCCGTCTAT 59.932 57.895 12.24 0.00 36.67 1.98
433 447 0.393537 CCAGTGAGTCCTGCAATCCC 60.394 60.000 0.00 0.00 0.00 3.85
436 450 0.111061 TTGCCAGTGAGTCCTGCAAT 59.889 50.000 0.00 0.00 0.00 3.56
437 451 0.535780 CTTGCCAGTGAGTCCTGCAA 60.536 55.000 0.00 0.00 31.98 4.08
439 453 1.072159 ACTTGCCAGTGAGTCCTGC 59.928 57.895 0.00 0.00 0.00 4.85
448 462 2.495155 TGCATATGTCACTTGCCAGT 57.505 45.000 4.29 0.00 35.51 4.00
449 463 5.700722 ATATTGCATATGTCACTTGCCAG 57.299 39.130 4.29 0.00 35.51 4.85
450 464 6.151480 CCATATATTGCATATGTCACTTGCCA 59.849 38.462 4.29 0.00 35.51 4.92
451 465 6.375174 TCCATATATTGCATATGTCACTTGCC 59.625 38.462 4.29 0.00 35.51 4.52
452 466 7.381766 TCCATATATTGCATATGTCACTTGC 57.618 36.000 4.29 2.56 36.91 4.01
455 469 9.797642 TCTTTTCCATATATTGCATATGTCACT 57.202 29.630 4.29 0.54 31.77 3.41
486 500 3.967332 ATGGAAGGTCAAAGCCAAATG 57.033 42.857 0.00 0.00 33.51 2.32
492 509 3.636153 AGAGGTATGGAAGGTCAAAGC 57.364 47.619 0.00 0.00 0.00 3.51
503 520 8.930846 AATTGGATCTCATTTTAGAGGTATGG 57.069 34.615 0.00 0.00 36.30 2.74
539 557 5.074804 GGAGTATTTATGGCCCCGTAATTT 58.925 41.667 0.00 0.00 0.00 1.82
540 558 4.507869 GGGAGTATTTATGGCCCCGTAATT 60.508 45.833 0.00 0.56 32.50 1.40
541 559 3.009805 GGGAGTATTTATGGCCCCGTAAT 59.990 47.826 0.00 0.00 32.50 1.89
545 563 1.064825 AGGGAGTATTTATGGCCCCG 58.935 55.000 0.00 0.00 39.68 5.73
547 565 3.653352 AGAGAAGGGAGTATTTATGGCCC 59.347 47.826 0.00 0.00 39.12 5.80
548 566 4.263112 GGAGAGAAGGGAGTATTTATGGCC 60.263 50.000 0.00 0.00 0.00 5.36
676 694 8.364142 GCTGGTGTATAGTAGAAAGAAGATGAT 58.636 37.037 0.00 0.00 0.00 2.45
677 695 7.201920 GGCTGGTGTATAGTAGAAAGAAGATGA 60.202 40.741 0.00 0.00 0.00 2.92
712 764 4.461198 GTGGATTAGGAGTACAAATGGGG 58.539 47.826 0.00 0.00 0.00 4.96
713 765 4.461198 GGTGGATTAGGAGTACAAATGGG 58.539 47.826 0.00 0.00 0.00 4.00
879 955 2.572104 GGGGTAGAGCTGAGGAGAAAAA 59.428 50.000 0.00 0.00 0.00 1.94
2078 2245 7.040473 ACTACGATAAATCAGGATTTCGAGT 57.960 36.000 17.97 14.15 40.99 4.18
2079 2246 9.627395 ATTACTACGATAAATCAGGATTTCGAG 57.373 33.333 17.97 13.73 40.99 4.04
2080 2247 9.976511 AATTACTACGATAAATCAGGATTTCGA 57.023 29.630 17.97 2.43 40.99 3.71
2136 2485 7.541091 TGTCTTATTTAATCGTCAGATATCGCC 59.459 37.037 0.00 0.00 35.74 5.54
2161 2901 9.100554 CGTATATATCTTACTGGAGTAGGAGTG 57.899 40.741 5.08 0.00 39.46 3.51
2179 2919 2.943690 ACAGCTCGATCGCCGTATATAT 59.056 45.455 11.09 0.00 39.75 0.86
2180 2920 2.353323 ACAGCTCGATCGCCGTATATA 58.647 47.619 11.09 0.00 39.75 0.86
2202 2948 4.752101 ACTTCTGGACGATCAAAACTGAAG 59.248 41.667 15.35 15.35 40.60 3.02
2212 2963 4.740695 GCATGTTAGTACTTCTGGACGATC 59.259 45.833 0.00 0.00 0.00 3.69
2267 3359 8.302438 TCGCCATATATATTGAGATATCTGCAG 58.698 37.037 10.74 7.63 31.09 4.41
2303 3395 0.179181 CATGTGCTGGACATTGACGC 60.179 55.000 12.37 0.00 43.20 5.19
2411 3830 7.659390 TCTGTTTGGGTTAATTTTATTTGCCAG 59.341 33.333 0.00 0.00 0.00 4.85
2428 3847 6.586082 CGATAAAAGTTTGGATTCTGTTTGGG 59.414 38.462 0.00 0.00 0.00 4.12
2439 4162 9.632807 CAACAAATAATCCGATAAAAGTTTGGA 57.367 29.630 0.00 0.00 31.54 3.53
2440 4163 9.418045 ACAACAAATAATCCGATAAAAGTTTGG 57.582 29.630 0.00 0.00 31.54 3.28
2445 4168 8.964420 ACACACAACAAATAATCCGATAAAAG 57.036 30.769 0.00 0.00 0.00 2.27
2453 4176 3.993736 GGCCAACACACAACAAATAATCC 59.006 43.478 0.00 0.00 0.00 3.01
2464 4187 3.484806 ACCTCGGGCCAACACACA 61.485 61.111 4.39 0.00 0.00 3.72
2465 4188 2.978010 CACCTCGGGCCAACACAC 60.978 66.667 4.39 0.00 0.00 3.82
2482 4205 2.097142 GCAAGCTTGATCATGTGTCCTC 59.903 50.000 30.39 3.37 0.00 3.71
2486 4209 2.089980 GGAGCAAGCTTGATCATGTGT 58.910 47.619 37.28 10.11 44.90 3.72
2492 4215 2.015587 CTCAAGGGAGCAAGCTTGATC 58.984 52.381 31.68 31.68 42.54 2.92
2547 4270 1.459348 TGAGGTGAGGTGTCTGCCA 60.459 57.895 0.00 0.00 0.00 4.92
2560 4284 2.442413 GTGTCTCTACTGCTCTGAGGT 58.558 52.381 6.83 0.00 0.00 3.85
2600 4324 1.968050 GATCGGGCTTTCGGAAGGGA 61.968 60.000 5.40 0.00 33.34 4.20
2664 4391 1.135972 GTCATGTGTGGTTCATGCGTC 60.136 52.381 0.00 0.00 41.40 5.19
2678 4405 4.881920 TGTATGCATATGCTACGTCATGT 58.118 39.130 27.13 5.97 42.66 3.21
2695 4422 6.220930 ACCTATTGTGCGTACCTATTGTATG 58.779 40.000 0.00 0.00 39.12 2.39
2697 4424 5.857471 ACCTATTGTGCGTACCTATTGTA 57.143 39.130 0.00 0.00 0.00 2.41
2699 4426 4.678287 CGTACCTATTGTGCGTACCTATTG 59.322 45.833 0.00 0.00 46.36 1.90
2700 4427 4.863491 CGTACCTATTGTGCGTACCTATT 58.137 43.478 0.00 0.00 46.36 1.73
2702 4429 3.969117 CGTACCTATTGTGCGTACCTA 57.031 47.619 0.00 0.00 46.36 3.08
2703 4430 2.857592 CGTACCTATTGTGCGTACCT 57.142 50.000 0.00 0.00 46.36 3.08
2709 4436 2.968675 AGTCCAACGTACCTATTGTGC 58.031 47.619 0.00 0.00 0.00 4.57
2710 4437 5.934935 AAAAGTCCAACGTACCTATTGTG 57.065 39.130 0.00 0.00 0.00 3.33
2734 4461 1.606903 ACGTACCCCATTCGCAAAAA 58.393 45.000 0.00 0.00 0.00 1.94
2735 4462 1.267261 CAACGTACCCCATTCGCAAAA 59.733 47.619 0.00 0.00 0.00 2.44
2736 4463 0.875728 CAACGTACCCCATTCGCAAA 59.124 50.000 0.00 0.00 0.00 3.68
2737 4464 0.956410 CCAACGTACCCCATTCGCAA 60.956 55.000 0.00 0.00 0.00 4.85
2738 4465 1.376166 CCAACGTACCCCATTCGCA 60.376 57.895 0.00 0.00 0.00 5.10
2739 4466 1.078988 TCCAACGTACCCCATTCGC 60.079 57.895 0.00 0.00 0.00 4.70
2740 4467 0.741927 GGTCCAACGTACCCCATTCG 60.742 60.000 0.00 0.00 0.00 3.34
2741 4468 3.164026 GGTCCAACGTACCCCATTC 57.836 57.895 0.00 0.00 0.00 2.67
2797 4524 5.707764 GGTCTTAATAAAGATGGATGGGCTC 59.292 44.000 0.00 0.00 43.50 4.70
2799 4526 5.635120 AGGTCTTAATAAAGATGGATGGGC 58.365 41.667 0.00 0.00 43.50 5.36
2941 4668 4.338539 GTCGAGGCGTGACGGTGT 62.339 66.667 7.25 0.00 0.00 4.16
2947 4674 1.080093 GTTCATGGTCGAGGCGTGA 60.080 57.895 0.00 0.00 0.00 4.35
2998 4775 4.859304 TCTCGCTACCTTTCAACAGTAA 57.141 40.909 0.00 0.00 0.00 2.24
3073 4859 1.278637 GCGTGAACGAACCAAGTGG 59.721 57.895 7.10 0.00 43.02 4.00
3080 4866 2.174969 TGTGTGGGCGTGAACGAAC 61.175 57.895 7.10 2.24 43.02 3.95
3084 4870 2.109739 TGTGTGTGTGGGCGTGAAC 61.110 57.895 0.00 0.00 0.00 3.18
3311 5111 1.867233 CGTTGTGTTCAGAGGTTGAGG 59.133 52.381 0.00 0.00 37.07 3.86
3324 5136 3.625745 CTTAGGGAAGCCGTTGTGT 57.374 52.632 0.00 0.00 0.00 3.72
3424 5240 2.032722 CGTGGTCGTTTTTCCATTTCGA 60.033 45.455 0.00 0.00 36.09 3.71
3478 5294 1.792057 GTGTCCAATTTCGCACGCG 60.792 57.895 3.53 3.53 41.35 6.01
3485 5301 2.097466 CGTGGCATAGGTGTCCAATTTC 59.903 50.000 0.00 0.00 34.71 2.17
3503 5319 2.950877 GCAGTAGCAGTAGAGCGTG 58.049 57.895 0.00 0.00 41.58 5.34
3521 5340 1.135939 CAGGTGTCATGCATGCGTG 59.864 57.895 30.20 30.20 0.00 5.34
3577 5446 2.232696 ACAGGTGTCATACATGCGTACA 59.767 45.455 0.00 0.00 44.60 2.90
3632 5502 7.388437 TCCACGTCAACAGGTTAGTTTATATT 58.612 34.615 0.00 0.00 0.00 1.28
3754 6652 1.150567 CGAGCTCCTTCTGCAATCGG 61.151 60.000 8.47 0.00 0.00 4.18
4060 6958 1.377202 CTCAAAGCAGCCGCCCTTA 60.377 57.895 0.00 0.00 39.83 2.69
4084 6982 3.367743 CGACCAGACCCGAACGGA 61.368 66.667 15.07 0.00 37.50 4.69
4156 7054 4.473520 AATCCGTGGGCGAGCTGG 62.474 66.667 0.00 0.00 41.33 4.85
4326 7224 5.848036 GCAAATGTATGATATCACGCTTGAC 59.152 40.000 7.78 0.78 33.38 3.18
4330 7228 4.058124 ACGCAAATGTATGATATCACGCT 58.942 39.130 7.78 0.00 0.00 5.07
4345 7243 2.549926 TCATAGATCGCACACGCAAAT 58.450 42.857 0.00 0.00 39.84 2.32
4346 7244 2.003196 TCATAGATCGCACACGCAAA 57.997 45.000 0.00 0.00 39.84 3.68
4351 7249 5.267009 CGGTAGATATCATAGATCGCACAC 58.733 45.833 5.32 0.00 0.00 3.82
4365 7263 0.681733 CCTGTGCAGCCGGTAGATAT 59.318 55.000 1.90 0.00 0.00 1.63
4391 7289 1.409521 CCACCACCTCTGACCAAACAA 60.410 52.381 0.00 0.00 0.00 2.83
4474 7372 7.066284 CCTCAGTACCATAATTCAAAAGACAGG 59.934 40.741 0.00 0.00 0.00 4.00
4475 7373 7.824289 TCCTCAGTACCATAATTCAAAAGACAG 59.176 37.037 0.00 0.00 0.00 3.51
4489 7388 7.347222 TCCACTTATTATGTTCCTCAGTACCAT 59.653 37.037 0.00 0.00 0.00 3.55
4492 7391 8.643324 AGATCCACTTATTATGTTCCTCAGTAC 58.357 37.037 0.00 0.00 0.00 2.73
4622 7521 6.472887 ACGAAGAAATTTACAGAATCTGGGA 58.527 36.000 15.38 0.00 35.51 4.37
4657 7557 5.047377 AGGCCAATCTTTGCGATCTTAAAAA 60.047 36.000 5.01 0.00 0.00 1.94
4718 7618 3.757184 TCCATGCGAATTTTTCACATCG 58.243 40.909 0.00 0.00 38.28 3.84
4783 7684 0.793861 TGTAAAATGCAGACCGACGC 59.206 50.000 0.00 0.00 0.00 5.19
4788 7689 1.202348 GTGCCCTGTAAAATGCAGACC 59.798 52.381 0.00 0.00 36.12 3.85
4859 7760 0.034767 TCGACACTAGGGACGGATGT 60.035 55.000 16.55 0.00 0.00 3.06
4886 7787 9.533068 TCCCTCCATCCCATAATATAATACAAT 57.467 33.333 0.00 0.00 0.00 2.71
4887 7788 8.941639 TCCCTCCATCCCATAATATAATACAA 57.058 34.615 0.00 0.00 0.00 2.41
4888 7789 8.941639 TTCCCTCCATCCCATAATATAATACA 57.058 34.615 0.00 0.00 0.00 2.29
4923 7824 3.594603 AGTTGAGTAGTTGTGCGCTAT 57.405 42.857 9.73 0.00 0.00 2.97
4950 7851 8.954950 AGCTATATGGAAGTATATGCATTGAC 57.045 34.615 3.54 3.27 33.15 3.18
5029 7933 7.759489 ATTAATCTTGTCCTTGCACTACAAA 57.241 32.000 8.53 2.55 37.96 2.83
5098 8002 7.764443 TGCCTAGATTATCGCACTTAAATATCC 59.236 37.037 0.00 0.00 0.00 2.59
5138 8042 3.242091 CCAAATCATGTACTCGCAAGTCG 60.242 47.826 0.00 0.00 36.92 4.18
5139 8043 3.684788 ACCAAATCATGTACTCGCAAGTC 59.315 43.478 0.00 0.00 36.92 3.01
5140 8044 3.674997 ACCAAATCATGTACTCGCAAGT 58.325 40.909 0.00 0.00 39.66 3.16
5141 8045 3.684305 TGACCAAATCATGTACTCGCAAG 59.316 43.478 0.00 0.00 29.99 4.01
5142 8046 3.435327 GTGACCAAATCATGTACTCGCAA 59.565 43.478 0.00 0.00 40.28 4.85
5143 8047 3.000041 GTGACCAAATCATGTACTCGCA 59.000 45.455 0.00 0.00 40.28 5.10
5144 8048 2.351726 GGTGACCAAATCATGTACTCGC 59.648 50.000 0.00 0.00 40.28 5.03
5283 8187 7.552687 TCTGCCGAATTTCTTATTTGAGTACAT 59.447 33.333 0.00 0.00 0.00 2.29
5284 8188 6.876789 TCTGCCGAATTTCTTATTTGAGTACA 59.123 34.615 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.