Multiple sequence alignment - TraesCS1B01G202000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G202000 chr1B 100.000 6296 0 0 1 6296 362595569 362601864 0.000000e+00 11627.0
1 TraesCS1B01G202000 chr1B 91.028 457 31 7 1792 2241 130133705 130133252 6.170000e-170 608.0
2 TraesCS1B01G202000 chr1B 90.364 467 27 10 1788 2241 20692579 20693040 1.330000e-166 597.0
3 TraesCS1B01G202000 chr1B 100.000 267 0 0 6921 7187 362602489 362602755 1.800000e-135 494.0
4 TraesCS1B01G202000 chr1B 100.000 37 0 0 5155 5191 362600688 362600724 1.290000e-07 69.4
5 TraesCS1B01G202000 chr1B 100.000 37 0 0 5120 5156 362600723 362600759 1.290000e-07 69.4
6 TraesCS1B01G202000 chr1D 96.318 2933 69 17 2242 5156 251715759 251712848 0.000000e+00 4782.0
7 TraesCS1B01G202000 chr1D 93.652 1150 39 14 5155 6296 251712883 251711760 0.000000e+00 1688.0
8 TraesCS1B01G202000 chr1D 91.135 925 57 8 870 1789 251716655 251715751 0.000000e+00 1230.0
9 TraesCS1B01G202000 chr1D 90.168 417 35 5 1797 2208 226730433 226730018 8.200000e-149 538.0
10 TraesCS1B01G202000 chr1D 88.424 311 34 2 421 729 251721080 251720770 2.450000e-99 374.0
11 TraesCS1B01G202000 chr1D 85.000 100 6 4 6998 7089 251711326 251711228 7.680000e-15 93.5
12 TraesCS1B01G202000 chr1A 97.318 1715 26 5 3450 5149 321885812 321884103 0.000000e+00 2894.0
13 TraesCS1B01G202000 chr1A 97.694 1214 26 2 2241 3452 321887229 321886016 0.000000e+00 2085.0
14 TraesCS1B01G202000 chr1A 94.196 1120 38 10 5183 6296 321883988 321882890 0.000000e+00 1683.0
15 TraesCS1B01G202000 chr1A 90.323 930 64 9 870 1791 321888129 321887218 0.000000e+00 1195.0
16 TraesCS1B01G202000 chr1A 83.885 453 68 3 420 871 321889643 321889195 1.850000e-115 427.0
17 TraesCS1B01G202000 chr1A 97.368 152 3 1 6993 7144 321880963 321880813 2.570000e-64 257.0
18 TraesCS1B01G202000 chr1A 85.425 247 22 11 1 244 321891847 321891612 2.000000e-60 244.0
19 TraesCS1B01G202000 chr2B 93.275 684 41 3 1108 1791 73149149 73148471 0.000000e+00 1003.0
20 TraesCS1B01G202000 chr2B 91.026 468 28 5 1787 2241 702728459 702727993 2.850000e-173 619.0
21 TraesCS1B01G202000 chr2B 97.759 357 8 0 2256 2612 73148361 73148005 3.680000e-172 616.0
22 TraesCS1B01G202000 chr3D 91.503 459 31 6 1789 2242 234811100 234810645 6.120000e-175 625.0
23 TraesCS1B01G202000 chr4A 90.870 471 29 5 1789 2246 403172218 403171749 2.850000e-173 619.0
24 TraesCS1B01G202000 chr4A 90.851 470 29 5 1786 2242 304782566 304782098 1.020000e-172 617.0
25 TraesCS1B01G202000 chr3A 90.832 469 29 5 1786 2241 334784493 334784960 3.680000e-172 616.0
26 TraesCS1B01G202000 chr6B 90.254 472 31 7 1789 2247 23548389 23547920 2.870000e-168 603.0
27 TraesCS1B01G202000 chr7D 88.987 454 39 10 1792 2241 101035677 101036123 1.050000e-152 551.0
28 TraesCS1B01G202000 chr7D 87.257 463 42 9 1792 2241 552061331 552061789 4.970000e-141 512.0
29 TraesCS1B01G202000 chr4D 87.500 464 43 12 1789 2241 112225864 112226323 8.260000e-144 521.0
30 TraesCS1B01G202000 chr2A 83.186 452 46 17 1792 2241 404907383 404906960 3.140000e-103 387.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G202000 chr1B 362595569 362602755 7186 False 3064.950 11627 100.000000 1 7187 4 chr1B.!!$F2 7186
1 TraesCS1B01G202000 chr1D 251711228 251716655 5427 True 1948.375 4782 91.526250 870 7089 4 chr1D.!!$R3 6219
2 TraesCS1B01G202000 chr1A 321880813 321891847 11034 True 1255.000 2894 92.315571 1 7144 7 chr1A.!!$R1 7143
3 TraesCS1B01G202000 chr2B 73148005 73149149 1144 True 809.500 1003 95.517000 1108 2612 2 chr2B.!!$R2 1504

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
626 2464 0.033699 AGAAAGGCAATGGAGGGAGC 60.034 55.000 0.00 0.00 0.00 4.70 F
1799 4732 0.038166 GGATTGTTCAGACCTGGCCA 59.962 55.000 4.71 4.71 0.00 5.36 F
1880 4813 0.172352 CCGCCATGGCACGTTTTAAT 59.828 50.000 34.93 0.00 42.06 1.40 F
1888 4821 0.248336 GCACGTTTTAATAGCCGGGC 60.248 55.000 12.11 12.11 42.94 6.13 F
3374 6412 0.320374 TAGGAGTTTGCCGTCACCAG 59.680 55.000 0.00 0.00 0.00 4.00 F
4702 7975 4.186159 CCATTTCATTTGCCTTCCATGAC 58.814 43.478 0.00 0.00 0.00 3.06 F
5223 8577 0.385751 GCCTCGTATCTGCAGTGCTA 59.614 55.000 17.60 4.84 0.00 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1861 4794 0.172352 ATTAAAACGTGCCATGGCGG 59.828 50.000 30.87 26.12 45.51 6.13 R
2765 5803 0.682852 GTATACCATGGGGCGCTACA 59.317 55.000 18.09 7.26 37.90 2.74 R
3342 6380 5.278957 GGCAAACTCCTAAATGAGCTGAAAA 60.279 40.000 0.00 0.00 35.72 2.29 R
3795 7039 6.896021 ACATACGCTACTAGGTAATGTCAT 57.104 37.500 0.00 0.00 0.00 3.06 R
4860 8133 0.169672 CTGCAATTCTTGTGCCTCCG 59.830 55.000 0.00 0.00 41.49 4.63 R
5828 9186 0.864455 GCAGACAGCTCACACTTGTC 59.136 55.000 0.00 0.00 41.10 3.18 R
6191 9552 1.134580 CCTGCACAGGTGATCAGTAGG 60.135 57.143 8.61 0.00 43.61 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 72 9.762381 AAACTCACTATTTATATGTTTTCCCCA 57.238 29.630 0.00 0.00 0.00 4.96
178 181 2.236893 CCTAACTGGGCCTAACCGTTTA 59.763 50.000 4.53 0.00 40.62 2.01
179 182 2.189594 AACTGGGCCTAACCGTTTAC 57.810 50.000 4.53 0.00 40.62 2.01
189 192 1.777941 AACCGTTTACTTTGGGCCAA 58.222 45.000 16.66 16.66 0.00 4.52
200 203 0.181350 TTGGGCCAAATTTTGCGGTT 59.819 45.000 18.51 0.00 0.00 4.44
219 222 2.735478 CGCCGAGCAACCGTTACA 60.735 61.111 0.00 0.00 0.00 2.41
220 223 2.858158 GCCGAGCAACCGTTACAC 59.142 61.111 0.00 0.00 0.00 2.90
221 224 3.007070 GCCGAGCAACCGTTACACG 62.007 63.158 0.00 0.00 42.11 4.49
222 225 1.662446 CCGAGCAACCGTTACACGT 60.662 57.895 1.49 0.00 40.58 4.49
223 226 1.216941 CCGAGCAACCGTTACACGTT 61.217 55.000 0.00 0.00 40.58 3.99
224 227 1.407434 CGAGCAACCGTTACACGTTA 58.593 50.000 0.00 0.00 40.58 3.18
225 228 1.384409 CGAGCAACCGTTACACGTTAG 59.616 52.381 0.00 0.00 40.58 2.34
226 229 1.125566 GAGCAACCGTTACACGTTAGC 59.874 52.381 0.00 0.00 40.58 3.09
227 230 0.164432 GCAACCGTTACACGTTAGCC 59.836 55.000 0.00 0.00 40.58 3.93
228 231 1.500108 CAACCGTTACACGTTAGCCA 58.500 50.000 0.00 0.00 40.58 4.75
229 232 2.070783 CAACCGTTACACGTTAGCCAT 58.929 47.619 0.00 0.00 40.58 4.40
230 233 2.460757 ACCGTTACACGTTAGCCATT 57.539 45.000 0.00 0.00 40.58 3.16
232 235 2.481185 ACCGTTACACGTTAGCCATTTG 59.519 45.455 0.00 0.00 40.58 2.32
233 236 2.501881 CGTTACACGTTAGCCATTTGC 58.498 47.619 0.00 0.00 36.74 3.68
243 246 2.813100 GCCATTTGCTCGTTTGTGG 58.187 52.632 0.00 0.00 36.87 4.17
245 248 1.930371 GCCATTTGCTCGTTTGTGGAC 60.930 52.381 0.00 0.00 36.87 4.02
246 249 1.335872 CCATTTGCTCGTTTGTGGACC 60.336 52.381 0.00 0.00 0.00 4.46
247 250 0.958822 ATTTGCTCGTTTGTGGACCC 59.041 50.000 0.00 0.00 0.00 4.46
248 251 1.104577 TTTGCTCGTTTGTGGACCCC 61.105 55.000 0.00 0.00 0.00 4.95
249 252 1.990160 TTGCTCGTTTGTGGACCCCT 61.990 55.000 0.00 0.00 0.00 4.79
250 253 1.122632 TGCTCGTTTGTGGACCCCTA 61.123 55.000 0.00 0.00 0.00 3.53
251 254 0.035739 GCTCGTTTGTGGACCCCTAA 59.964 55.000 0.00 0.00 0.00 2.69
252 255 1.543871 GCTCGTTTGTGGACCCCTAAA 60.544 52.381 0.00 0.00 0.00 1.85
253 256 2.853705 CTCGTTTGTGGACCCCTAAAA 58.146 47.619 0.00 0.00 0.00 1.52
254 257 3.215975 CTCGTTTGTGGACCCCTAAAAA 58.784 45.455 0.00 0.00 0.00 1.94
274 277 3.791973 AAAATTGCTCGTTTGTGGTCA 57.208 38.095 0.00 0.00 0.00 4.02
275 278 2.774439 AATTGCTCGTTTGTGGTCAC 57.226 45.000 0.00 0.00 0.00 3.67
276 279 1.674359 ATTGCTCGTTTGTGGTCACA 58.326 45.000 0.00 0.00 39.98 3.58
288 291 3.560636 GTGGTCACACTATGGGCTATT 57.439 47.619 0.00 0.00 44.29 1.73
289 292 3.886123 GTGGTCACACTATGGGCTATTT 58.114 45.455 0.00 0.00 44.29 1.40
290 293 3.627577 GTGGTCACACTATGGGCTATTTG 59.372 47.826 0.00 0.00 44.29 2.32
300 303 1.066257 GGCTATTTGGCATGCACGG 59.934 57.895 21.36 4.13 41.37 4.94
301 304 1.589727 GCTATTTGGCATGCACGGC 60.590 57.895 21.36 0.00 0.00 5.68
306 309 2.745906 TTTGGCATGCACGGCGAAAG 62.746 55.000 21.36 3.87 34.69 2.62
308 311 2.202349 GCATGCACGGCGAAAGAC 60.202 61.111 16.62 0.00 0.00 3.01
331 334 9.667107 AGACGATTCATAAACAAGAATTCCTAA 57.333 29.630 0.65 0.00 34.79 2.69
337 340 2.828661 ACAAGAATTCCTAAGCCCCC 57.171 50.000 0.65 0.00 0.00 5.40
359 363 5.469479 CCCAATACTCATGGTTTTGTTGAC 58.531 41.667 12.71 0.00 35.89 3.18
368 372 7.231317 ACTCATGGTTTTGTTGACTGATACATT 59.769 33.333 0.00 0.00 0.00 2.71
392 396 1.003580 GAGATCAGCTCCAAACCACCA 59.996 52.381 0.00 0.00 37.69 4.17
394 398 1.747355 GATCAGCTCCAAACCACCATG 59.253 52.381 0.00 0.00 0.00 3.66
396 400 1.607467 AGCTCCAAACCACCATGGC 60.607 57.895 13.04 0.00 42.67 4.40
397 401 2.993471 GCTCCAAACCACCATGGCG 61.993 63.158 13.04 0.90 42.67 5.69
398 402 2.988684 TCCAAACCACCATGGCGC 60.989 61.111 13.04 0.00 42.67 6.53
399 403 3.301554 CCAAACCACCATGGCGCA 61.302 61.111 13.04 0.00 42.67 6.09
400 404 2.259204 CAAACCACCATGGCGCAG 59.741 61.111 13.04 0.00 42.67 5.18
401 405 2.115052 AAACCACCATGGCGCAGA 59.885 55.556 13.04 0.00 42.67 4.26
402 406 2.268076 AAACCACCATGGCGCAGAC 61.268 57.895 13.04 0.00 42.67 3.51
423 2261 1.597027 CCGCCCGTTGGGTATGATC 60.597 63.158 3.40 0.00 46.51 2.92
432 2270 2.162264 TGGGTATGATCGGTGTGGTA 57.838 50.000 0.00 0.00 0.00 3.25
435 2273 2.367567 GGGTATGATCGGTGTGGTATGT 59.632 50.000 0.00 0.00 0.00 2.29
438 2276 4.321750 GGTATGATCGGTGTGGTATGTAGG 60.322 50.000 0.00 0.00 0.00 3.18
446 2284 2.997986 GTGTGGTATGTAGGAACAACGG 59.002 50.000 0.00 0.00 39.58 4.44
447 2285 2.898612 TGTGGTATGTAGGAACAACGGA 59.101 45.455 0.00 0.00 39.58 4.69
452 2290 2.825861 TGTAGGAACAACGGAGGTTC 57.174 50.000 7.36 7.36 42.99 3.62
460 2298 3.053831 ACAACGGAGGTTCATACTTGG 57.946 47.619 0.00 0.00 32.98 3.61
463 2301 0.180406 CGGAGGTTCATACTTGGGGG 59.820 60.000 0.00 0.00 0.00 5.40
467 2305 0.335019 GGTTCATACTTGGGGGCCTT 59.665 55.000 0.84 0.00 0.00 4.35
469 2307 1.005450 GTTCATACTTGGGGGCCTTCA 59.995 52.381 0.84 0.00 0.00 3.02
483 2321 2.693074 GGCCTTCACCAGAGTTTTTGAA 59.307 45.455 0.00 0.00 0.00 2.69
499 2337 1.627864 TGAAGGTGTGACTGATCCGA 58.372 50.000 0.00 0.00 0.00 4.55
512 2350 1.096416 GATCCGACAACTCTCGAGGT 58.904 55.000 13.56 6.66 35.58 3.85
522 2360 2.029073 CTCGAGGTGTTGGCGTGT 59.971 61.111 3.91 0.00 0.00 4.49
525 2363 0.319211 TCGAGGTGTTGGCGTGTAAG 60.319 55.000 0.00 0.00 0.00 2.34
526 2364 0.319211 CGAGGTGTTGGCGTGTAAGA 60.319 55.000 0.00 0.00 0.00 2.10
540 2378 3.751698 CGTGTAAGAAAGCTTTAGCCCTT 59.248 43.478 12.68 13.19 43.38 3.95
561 2399 2.292845 TGCGAGTGATTTGATGCAAACA 59.707 40.909 0.00 0.00 36.13 2.83
563 2401 2.904319 CGAGTGATTTGATGCAAACACG 59.096 45.455 0.00 0.00 38.75 4.49
565 2403 4.151258 AGTGATTTGATGCAAACACGAG 57.849 40.909 0.00 0.00 38.75 4.18
582 2420 1.597663 CGAGTTGTTGTCACTTGGGAC 59.402 52.381 0.00 0.00 38.29 4.46
588 2426 1.748493 GTTGTCACTTGGGACTGCAAA 59.252 47.619 4.58 0.00 38.61 3.68
612 2450 8.898983 AAAAATCATTGCAAACAACAAGAAAG 57.101 26.923 1.71 0.00 38.99 2.62
613 2451 6.607735 AATCATTGCAAACAACAAGAAAGG 57.392 33.333 1.71 0.00 38.99 3.11
614 2452 3.870419 TCATTGCAAACAACAAGAAAGGC 59.130 39.130 1.71 0.00 38.99 4.35
616 2454 3.325293 TGCAAACAACAAGAAAGGCAA 57.675 38.095 0.00 0.00 0.00 4.52
617 2455 3.871485 TGCAAACAACAAGAAAGGCAAT 58.129 36.364 0.00 0.00 0.00 3.56
619 2457 3.002553 GCAAACAACAAGAAAGGCAATGG 59.997 43.478 0.00 0.00 0.00 3.16
620 2458 4.440880 CAAACAACAAGAAAGGCAATGGA 58.559 39.130 0.00 0.00 0.00 3.41
626 2464 0.033699 AGAAAGGCAATGGAGGGAGC 60.034 55.000 0.00 0.00 0.00 4.70
666 2504 8.803397 ATGAGAAATTCAGATCATGTCTTTGA 57.197 30.769 0.00 0.00 39.68 2.69
673 2511 6.471976 TCAGATCATGTCTTTGAAGTTTCG 57.528 37.500 0.00 0.00 34.00 3.46
674 2512 5.409520 TCAGATCATGTCTTTGAAGTTTCGG 59.590 40.000 0.00 0.00 34.00 4.30
690 2528 0.387929 TCGGTCTTGCTCTTTCGTGT 59.612 50.000 0.00 0.00 0.00 4.49
713 2551 5.407407 TTGAAGAAAGAGCCTCGAATACT 57.593 39.130 0.00 0.00 0.00 2.12
716 2554 4.647424 AGAAAGAGCCTCGAATACTGAG 57.353 45.455 0.00 0.00 0.00 3.35
737 2575 0.173255 CACATAGCCCCCGCAAAAAG 59.827 55.000 0.00 0.00 37.52 2.27
742 2580 1.415200 AGCCCCCGCAAAAAGTAAAA 58.585 45.000 0.00 0.00 37.52 1.52
743 2581 1.763545 AGCCCCCGCAAAAAGTAAAAA 59.236 42.857 0.00 0.00 37.52 1.94
744 2582 2.370519 AGCCCCCGCAAAAAGTAAAAAT 59.629 40.909 0.00 0.00 37.52 1.82
745 2583 3.579151 AGCCCCCGCAAAAAGTAAAAATA 59.421 39.130 0.00 0.00 37.52 1.40
752 2590 9.175060 CCCCGCAAAAAGTAAAAATAAAAATTG 57.825 29.630 0.00 0.00 0.00 2.32
763 2601 9.083080 GTAAAAATAAAAATTGAGGCGCATAGT 57.917 29.630 10.83 0.00 0.00 2.12
774 2612 1.612156 GCGCATAGTCTCGCTAGATG 58.388 55.000 0.30 0.00 46.92 2.90
795 2633 4.893608 TGCACACTTAATCTTGCAGTAGA 58.106 39.130 1.89 0.00 40.01 2.59
797 2635 5.582269 TGCACACTTAATCTTGCAGTAGATC 59.418 40.000 1.39 0.00 40.01 2.75
817 2655 0.251354 GTCATCTCTGGCTCCTGCAA 59.749 55.000 0.00 0.00 41.91 4.08
821 2659 3.635268 CTCTGGCTCCTGCAACCCC 62.635 68.421 0.00 0.00 41.91 4.95
822 2660 3.655211 CTGGCTCCTGCAACCCCT 61.655 66.667 0.00 0.00 41.91 4.79
823 2661 3.933048 CTGGCTCCTGCAACCCCTG 62.933 68.421 0.00 0.00 41.91 4.45
825 2663 3.971702 GCTCCTGCAACCCCTGGT 61.972 66.667 0.00 0.00 39.41 4.00
830 2669 1.203001 TCCTGCAACCCCTGGTTTAAG 60.203 52.381 0.00 0.00 44.33 1.85
833 2672 3.308832 CCTGCAACCCCTGGTTTAAGATA 60.309 47.826 0.00 0.00 44.33 1.98
835 2674 5.398581 CCTGCAACCCCTGGTTTAAGATATA 60.399 44.000 0.00 0.00 44.33 0.86
841 2680 7.723109 ACCCCTGGTTTAAGATATATTCCTT 57.277 36.000 0.00 0.00 27.29 3.36
878 3784 9.986833 TGATCAATAAATGAATTGTTACTCACG 57.013 29.630 0.00 0.00 42.54 4.35
993 3899 2.229589 CGCGCTCTGCTTCAGCTAG 61.230 63.158 5.56 0.00 43.27 3.42
1071 3977 0.042731 TCCTGCTGCTACCCCTACTT 59.957 55.000 0.00 0.00 0.00 2.24
1217 4123 0.178909 TCCCCCACCGTTAAGTACCA 60.179 55.000 0.00 0.00 0.00 3.25
1221 4127 2.237893 CCCCACCGTTAAGTACCATCTT 59.762 50.000 0.00 0.00 0.00 2.40
1223 4129 3.055675 CCCACCGTTAAGTACCATCTTCA 60.056 47.826 0.00 0.00 0.00 3.02
1240 4146 5.614324 TCTTCACTTCTCTGTTCCTTCAA 57.386 39.130 0.00 0.00 0.00 2.69
1302 4208 2.233676 GCCCTTTTATCTGTTTGGGTGG 59.766 50.000 0.00 0.00 37.09 4.61
1308 4230 6.211384 CCTTTTATCTGTTTGGGTGGATTTCT 59.789 38.462 0.00 0.00 0.00 2.52
1309 4231 6.588719 TTTATCTGTTTGGGTGGATTTCTG 57.411 37.500 0.00 0.00 0.00 3.02
1310 4232 3.593442 TCTGTTTGGGTGGATTTCTGT 57.407 42.857 0.00 0.00 0.00 3.41
1311 4233 3.221771 TCTGTTTGGGTGGATTTCTGTG 58.778 45.455 0.00 0.00 0.00 3.66
1312 4234 2.297033 CTGTTTGGGTGGATTTCTGTGG 59.703 50.000 0.00 0.00 0.00 4.17
1313 4235 2.091610 TGTTTGGGTGGATTTCTGTGGA 60.092 45.455 0.00 0.00 0.00 4.02
1314 4236 2.962421 GTTTGGGTGGATTTCTGTGGAA 59.038 45.455 0.00 0.00 0.00 3.53
1315 4237 2.286365 TGGGTGGATTTCTGTGGAAC 57.714 50.000 0.00 0.00 37.35 3.62
1316 4238 1.203001 TGGGTGGATTTCTGTGGAACC 60.203 52.381 0.00 0.00 34.36 3.62
1317 4239 1.075536 GGGTGGATTTCTGTGGAACCT 59.924 52.381 0.00 0.00 34.36 3.50
1318 4240 2.307686 GGGTGGATTTCTGTGGAACCTA 59.692 50.000 0.00 0.00 34.36 3.08
1319 4241 3.053619 GGGTGGATTTCTGTGGAACCTAT 60.054 47.826 0.00 0.00 34.36 2.57
1320 4242 4.200092 GGTGGATTTCTGTGGAACCTATC 58.800 47.826 0.00 0.00 34.36 2.08
1321 4243 4.324254 GGTGGATTTCTGTGGAACCTATCA 60.324 45.833 0.00 0.00 34.36 2.15
1322 4244 5.440610 GTGGATTTCTGTGGAACCTATCAT 58.559 41.667 0.00 0.00 34.36 2.45
1323 4245 5.529060 GTGGATTTCTGTGGAACCTATCATC 59.471 44.000 0.00 0.00 34.36 2.92
1373 4295 4.751060 ACTAGATAAATTTGTGCGGTCGA 58.249 39.130 0.00 0.00 0.00 4.20
1374 4296 5.357257 ACTAGATAAATTTGTGCGGTCGAT 58.643 37.500 0.00 0.00 0.00 3.59
1416 4340 4.925068 AGATTTTTGTATGGATTCTGCGC 58.075 39.130 0.00 0.00 0.00 6.09
1532 4456 9.669353 ATGTCTCAAAATGCATCGAATAATAAC 57.331 29.630 0.00 0.00 0.00 1.89
1605 4530 3.053831 CTGTAAACCAGGTGGATCGTT 57.946 47.619 2.10 0.00 37.54 3.85
1609 4534 0.476771 AACCAGGTGGATCGTTTGGT 59.523 50.000 2.10 4.54 43.66 3.67
1723 4653 6.937465 TGTAGAACAAAGCACATGGTTATGTA 59.063 34.615 0.00 0.00 45.53 2.29
1791 4724 1.616725 GCATGGTGGGGATTGTTCAGA 60.617 52.381 0.00 0.00 0.00 3.27
1792 4725 2.094675 CATGGTGGGGATTGTTCAGAC 58.905 52.381 0.00 0.00 0.00 3.51
1793 4726 0.404040 TGGTGGGGATTGTTCAGACC 59.596 55.000 0.00 0.00 0.00 3.85
1795 4728 1.614317 GGTGGGGATTGTTCAGACCTG 60.614 57.143 0.00 0.00 0.00 4.00
1796 4729 0.698238 TGGGGATTGTTCAGACCTGG 59.302 55.000 0.00 0.00 0.00 4.45
1797 4730 0.681243 GGGGATTGTTCAGACCTGGC 60.681 60.000 0.00 0.00 0.00 4.85
1798 4731 0.681243 GGGATTGTTCAGACCTGGCC 60.681 60.000 0.00 0.00 0.00 5.36
1799 4732 0.038166 GGATTGTTCAGACCTGGCCA 59.962 55.000 4.71 4.71 0.00 5.36
1800 4733 1.547675 GGATTGTTCAGACCTGGCCAA 60.548 52.381 7.01 0.00 0.00 4.52
1801 4734 2.238521 GATTGTTCAGACCTGGCCAAA 58.761 47.619 7.01 0.00 0.00 3.28
1802 4735 1.398692 TTGTTCAGACCTGGCCAAAC 58.601 50.000 7.01 7.93 0.00 2.93
1803 4736 0.257328 TGTTCAGACCTGGCCAAACA 59.743 50.000 13.21 13.21 0.00 2.83
1804 4737 0.954452 GTTCAGACCTGGCCAAACAG 59.046 55.000 7.01 0.00 38.21 3.16
1840 4773 4.265206 GGCATGGCCTGTGCTAAT 57.735 55.556 25.76 0.00 46.69 1.73
1841 4774 2.036236 GGCATGGCCTGTGCTAATC 58.964 57.895 25.76 11.19 46.69 1.75
1842 4775 1.650912 GCATGGCCTGTGCTAATCG 59.349 57.895 21.64 0.00 39.45 3.34
1843 4776 1.097547 GCATGGCCTGTGCTAATCGT 61.098 55.000 21.64 0.00 39.45 3.73
1844 4777 0.659427 CATGGCCTGTGCTAATCGTG 59.341 55.000 3.32 0.00 37.74 4.35
1845 4778 1.097547 ATGGCCTGTGCTAATCGTGC 61.098 55.000 3.32 0.00 37.74 5.34
1846 4779 2.472909 GGCCTGTGCTAATCGTGCC 61.473 63.158 0.00 0.00 37.74 5.01
1847 4780 1.450312 GCCTGTGCTAATCGTGCCT 60.450 57.895 0.00 0.00 33.53 4.75
1848 4781 1.709147 GCCTGTGCTAATCGTGCCTG 61.709 60.000 0.00 0.00 33.53 4.85
1849 4782 1.091771 CCTGTGCTAATCGTGCCTGG 61.092 60.000 0.00 0.00 0.00 4.45
1850 4783 1.709147 CTGTGCTAATCGTGCCTGGC 61.709 60.000 12.87 12.87 0.00 4.85
1851 4784 2.124736 TGCTAATCGTGCCTGGCC 60.125 61.111 17.53 6.66 0.00 5.36
1852 4785 2.902343 GCTAATCGTGCCTGGCCC 60.902 66.667 17.53 2.94 0.00 5.80
1853 4786 2.588877 CTAATCGTGCCTGGCCCG 60.589 66.667 17.67 17.67 0.00 6.13
1854 4787 4.169696 TAATCGTGCCTGGCCCGG 62.170 66.667 22.84 9.24 0.00 5.73
1877 4810 3.679738 CCCGCCATGGCACGTTTT 61.680 61.111 34.93 0.00 42.06 2.43
1878 4811 2.336478 CCCGCCATGGCACGTTTTA 61.336 57.895 34.93 0.00 42.06 1.52
1879 4812 1.581954 CCGCCATGGCACGTTTTAA 59.418 52.632 34.93 0.00 42.06 1.52
1880 4813 0.172352 CCGCCATGGCACGTTTTAAT 59.828 50.000 34.93 0.00 42.06 1.40
1881 4814 1.402259 CCGCCATGGCACGTTTTAATA 59.598 47.619 34.93 0.00 42.06 0.98
1882 4815 2.540769 CCGCCATGGCACGTTTTAATAG 60.541 50.000 34.93 14.50 42.06 1.73
1883 4816 2.459934 GCCATGGCACGTTTTAATAGC 58.540 47.619 32.08 0.00 41.49 2.97
1884 4817 2.798145 GCCATGGCACGTTTTAATAGCC 60.798 50.000 32.08 3.98 45.41 3.93
1886 4819 3.909957 GGCACGTTTTAATAGCCGG 57.090 52.632 0.00 0.00 35.42 6.13
1887 4820 0.379316 GGCACGTTTTAATAGCCGGG 59.621 55.000 2.18 0.00 35.42 5.73
1888 4821 0.248336 GCACGTTTTAATAGCCGGGC 60.248 55.000 12.11 12.11 42.94 6.13
1889 4822 0.379316 CACGTTTTAATAGCCGGGCC 59.621 55.000 17.02 0.00 0.00 5.80
1890 4823 1.091197 ACGTTTTAATAGCCGGGCCG 61.091 55.000 21.46 21.46 0.00 6.13
1891 4824 1.091197 CGTTTTAATAGCCGGGCCGT 61.091 55.000 26.32 10.07 0.00 5.68
1892 4825 0.379316 GTTTTAATAGCCGGGCCGTG 59.621 55.000 26.32 17.25 0.00 4.94
1893 4826 1.378124 TTTTAATAGCCGGGCCGTGC 61.378 55.000 26.32 25.86 0.00 5.34
1932 4865 3.970410 CTCCTTGGCCCAGGCACA 61.970 66.667 18.38 0.00 44.11 4.57
1933 4866 3.506743 TCCTTGGCCCAGGCACAA 61.507 61.111 18.38 11.06 44.11 3.33
1934 4867 3.305516 CCTTGGCCCAGGCACAAC 61.306 66.667 10.51 0.00 44.11 3.32
1935 4868 2.521465 CTTGGCCCAGGCACAACA 60.521 61.111 11.50 0.00 44.11 3.33
1936 4869 1.909781 CTTGGCCCAGGCACAACAT 60.910 57.895 11.50 0.00 44.11 2.71
1937 4870 2.162338 CTTGGCCCAGGCACAACATG 62.162 60.000 11.50 0.00 44.11 3.21
1938 4871 2.283101 GGCCCAGGCACAACATGA 60.283 61.111 11.50 0.00 44.11 3.07
1939 4872 1.683365 GGCCCAGGCACAACATGAT 60.683 57.895 11.50 0.00 44.11 2.45
1940 4873 1.259840 GGCCCAGGCACAACATGATT 61.260 55.000 11.50 0.00 44.11 2.57
1941 4874 1.473258 GCCCAGGCACAACATGATTA 58.527 50.000 3.12 0.00 41.49 1.75
1942 4875 1.406539 GCCCAGGCACAACATGATTAG 59.593 52.381 3.12 0.00 41.49 1.73
1943 4876 2.726821 CCCAGGCACAACATGATTAGT 58.273 47.619 0.00 0.00 0.00 2.24
1944 4877 3.884895 CCCAGGCACAACATGATTAGTA 58.115 45.455 0.00 0.00 0.00 1.82
1945 4878 4.269183 CCCAGGCACAACATGATTAGTAA 58.731 43.478 0.00 0.00 0.00 2.24
1946 4879 4.704540 CCCAGGCACAACATGATTAGTAAA 59.295 41.667 0.00 0.00 0.00 2.01
1947 4880 5.393027 CCCAGGCACAACATGATTAGTAAAC 60.393 44.000 0.00 0.00 0.00 2.01
1948 4881 5.323900 CAGGCACAACATGATTAGTAAACG 58.676 41.667 0.00 0.00 0.00 3.60
1949 4882 4.394920 AGGCACAACATGATTAGTAAACGG 59.605 41.667 0.00 0.00 0.00 4.44
1950 4883 4.438200 GGCACAACATGATTAGTAAACGGG 60.438 45.833 0.00 0.00 0.00 5.28
1951 4884 4.658071 CACAACATGATTAGTAAACGGGC 58.342 43.478 0.00 0.00 0.00 6.13
1952 4885 3.692593 ACAACATGATTAGTAAACGGGCC 59.307 43.478 0.00 0.00 0.00 5.80
1953 4886 3.637911 ACATGATTAGTAAACGGGCCA 57.362 42.857 4.39 0.00 0.00 5.36
1954 4887 3.541632 ACATGATTAGTAAACGGGCCAG 58.458 45.455 4.39 1.85 0.00 4.85
1955 4888 2.032680 TGATTAGTAAACGGGCCAGC 57.967 50.000 4.39 0.00 0.00 4.85
1956 4889 1.306148 GATTAGTAAACGGGCCAGCC 58.694 55.000 4.39 0.00 0.00 4.85
1972 4905 2.900337 CCCGATGGCCCGTTTAGC 60.900 66.667 0.00 0.00 0.00 3.09
1973 4906 2.124901 CCGATGGCCCGTTTAGCA 60.125 61.111 0.00 0.00 0.00 3.49
1974 4907 2.469516 CCGATGGCCCGTTTAGCAC 61.470 63.158 0.00 0.00 0.00 4.40
1975 4908 1.743623 CGATGGCCCGTTTAGCACA 60.744 57.895 0.00 0.00 0.00 4.57
1976 4909 1.800681 GATGGCCCGTTTAGCACAC 59.199 57.895 0.00 0.00 0.00 3.82
1977 4910 0.676782 GATGGCCCGTTTAGCACACT 60.677 55.000 0.00 0.00 0.00 3.55
1978 4911 0.960364 ATGGCCCGTTTAGCACACTG 60.960 55.000 0.00 0.00 0.00 3.66
1979 4912 2.332654 GGCCCGTTTAGCACACTGG 61.333 63.158 0.00 0.00 0.00 4.00
1980 4913 2.332654 GCCCGTTTAGCACACTGGG 61.333 63.158 0.00 0.00 39.72 4.45
1981 4914 2.332654 CCCGTTTAGCACACTGGGC 61.333 63.158 0.00 0.00 0.00 5.36
1982 4915 1.302511 CCGTTTAGCACACTGGGCT 60.303 57.895 11.40 11.40 45.18 5.19
1983 4916 1.577328 CCGTTTAGCACACTGGGCTG 61.577 60.000 16.53 0.00 42.62 4.85
1984 4917 1.581447 GTTTAGCACACTGGGCTGC 59.419 57.895 16.53 2.53 42.62 5.25
1985 4918 1.150308 TTTAGCACACTGGGCTGCA 59.850 52.632 16.53 0.00 42.62 4.41
1986 4919 1.172180 TTTAGCACACTGGGCTGCAC 61.172 55.000 16.53 0.00 42.62 4.57
1987 4920 2.336484 TTAGCACACTGGGCTGCACA 62.336 55.000 16.53 3.77 42.62 4.57
1988 4921 2.128290 TAGCACACTGGGCTGCACAT 62.128 55.000 16.53 0.00 42.62 3.21
1989 4922 2.567497 GCACACTGGGCTGCACATT 61.567 57.895 4.43 0.00 33.31 2.71
1990 4923 2.043625 CACACTGGGCTGCACATTT 58.956 52.632 4.43 0.00 0.00 2.32
1991 4924 0.390124 CACACTGGGCTGCACATTTT 59.610 50.000 4.43 0.00 0.00 1.82
1992 4925 0.675633 ACACTGGGCTGCACATTTTC 59.324 50.000 4.43 0.00 0.00 2.29
1993 4926 0.675083 CACTGGGCTGCACATTTTCA 59.325 50.000 4.43 0.00 0.00 2.69
1994 4927 0.963962 ACTGGGCTGCACATTTTCAG 59.036 50.000 4.43 0.00 0.00 3.02
2000 4933 2.806608 CTGCACATTTTCAGCCTGTT 57.193 45.000 0.00 0.00 0.00 3.16
2001 4934 2.400399 CTGCACATTTTCAGCCTGTTG 58.600 47.619 0.00 0.00 0.00 3.33
2002 4935 1.068895 TGCACATTTTCAGCCTGTTGG 59.931 47.619 0.00 0.00 0.00 3.77
2003 4936 1.606224 GCACATTTTCAGCCTGTTGGG 60.606 52.381 0.00 0.00 38.36 4.12
2014 4947 1.256812 CCTGTTGGGCTGGTTTTAGG 58.743 55.000 0.00 0.00 0.00 2.69
2015 4948 0.603065 CTGTTGGGCTGGTTTTAGGC 59.397 55.000 0.00 0.00 42.08 3.93
2022 4955 2.031870 GGCTGGTTTTAGGCCTATTGG 58.968 52.381 14.74 2.61 42.31 3.16
2023 4956 2.031870 GCTGGTTTTAGGCCTATTGGG 58.968 52.381 14.74 3.67 38.36 4.12
2090 5023 1.785768 AAAAATTAAACGGGCGTGCC 58.214 45.000 1.16 1.16 0.00 5.01
2091 5024 0.387494 AAAATTAAACGGGCGTGCCG 60.387 50.000 4.53 3.09 36.85 5.69
2092 5025 1.517210 AAATTAAACGGGCGTGCCGT 61.517 50.000 4.53 0.00 46.18 5.68
2093 5026 2.190101 AATTAAACGGGCGTGCCGTG 62.190 55.000 6.29 2.43 43.33 4.94
2162 5095 3.428282 GTGCCCGTTTAGCCCGTG 61.428 66.667 0.00 0.00 0.00 4.94
2167 5100 3.784412 CGTTTAGCCCGTGCCGTG 61.784 66.667 0.00 0.00 38.69 4.94
2168 5101 4.097863 GTTTAGCCCGTGCCGTGC 62.098 66.667 0.00 0.00 38.69 5.34
2214 5147 4.379243 CTCGCGGGCTGACCTGTT 62.379 66.667 6.13 0.00 45.10 3.16
2215 5148 3.883744 CTCGCGGGCTGACCTGTTT 62.884 63.158 6.13 0.00 45.10 2.83
2216 5149 3.726517 CGCGGGCTGACCTGTTTG 61.727 66.667 0.00 0.00 45.10 2.93
2217 5150 3.365265 GCGGGCTGACCTGTTTGG 61.365 66.667 0.00 0.00 45.10 3.28
2226 5159 2.672996 CCTGTTTGGTCCGGCCTG 60.673 66.667 14.76 0.00 38.35 4.85
2227 5160 2.113139 CTGTTTGGTCCGGCCTGT 59.887 61.111 14.76 0.00 38.35 4.00
2228 5161 1.528309 CTGTTTGGTCCGGCCTGTT 60.528 57.895 14.76 0.00 38.35 3.16
2229 5162 1.076632 TGTTTGGTCCGGCCTGTTT 60.077 52.632 14.76 0.00 38.35 2.83
2230 5163 1.362355 GTTTGGTCCGGCCTGTTTG 59.638 57.895 14.76 0.00 38.35 2.93
2231 5164 1.830408 TTTGGTCCGGCCTGTTTGG 60.830 57.895 14.76 0.00 38.35 3.28
2245 5178 3.327757 CCTGTTTGGCCAGCTATAGGATA 59.672 47.826 17.22 0.00 0.00 2.59
2254 5187 5.221742 GGCCAGCTATAGGATAGTTCAGTTT 60.222 44.000 0.00 0.00 0.00 2.66
2442 5480 9.991906 ACAACTACTTAGCTGTGAGTTTATTAA 57.008 29.630 0.00 0.00 31.92 1.40
2765 5803 8.597167 ACACCTGTGCATGTACTATATATTGAT 58.403 33.333 15.25 0.00 0.00 2.57
2766 5804 8.876790 CACCTGTGCATGTACTATATATTGATG 58.123 37.037 15.25 0.00 0.00 3.07
2776 5814 4.714802 ACTATATATTGATGTAGCGCCCCA 59.285 41.667 2.29 0.08 31.60 4.96
2780 5818 1.920734 TTGATGTAGCGCCCCATGGT 61.921 55.000 11.73 0.00 0.00 3.55
2792 5830 3.295973 GCCCCATGGTATACACATGTTT 58.704 45.455 22.26 0.00 43.15 2.83
3374 6412 0.320374 TAGGAGTTTGCCGTCACCAG 59.680 55.000 0.00 0.00 0.00 4.00
3654 6898 8.363390 TCTGTCCTATTGCTACTCATATTTCTG 58.637 37.037 0.00 0.00 0.00 3.02
3795 7039 5.247084 CCTTTTGGATGGCATGAAATTTCA 58.753 37.500 22.52 22.52 44.07 2.69
4151 7424 7.884877 TGCTATCAAGAATATAGGGACCAATTG 59.115 37.037 0.00 0.00 0.00 2.32
4204 7477 9.265901 GCATAACATGAATACTTCACTGTAGAT 57.734 33.333 0.00 0.00 43.48 1.98
4687 7960 4.646945 TGTTTCTTACCAAGCACCATTTCA 59.353 37.500 0.00 0.00 0.00 2.69
4702 7975 4.186159 CCATTTCATTTGCCTTCCATGAC 58.814 43.478 0.00 0.00 0.00 3.06
4860 8133 8.718102 ATGTGTCCATGACAAACTTATACTAC 57.282 34.615 0.00 0.00 44.49 2.73
4941 8214 7.325338 GCCTGTTACGATTTTAACTTTCTTTCC 59.675 37.037 0.00 0.00 33.73 3.13
5130 8404 6.739008 GCAGGTAAGTATGTCAGGTAAGGATC 60.739 46.154 0.00 0.00 0.00 3.36
5173 8447 8.375493 AGAATACAGGTAAGGATCAGTTAACA 57.625 34.615 8.61 0.00 0.00 2.41
5174 8448 8.993424 AGAATACAGGTAAGGATCAGTTAACAT 58.007 33.333 8.61 0.00 0.00 2.71
5177 8451 7.125792 ACAGGTAAGGATCAGTTAACATAGG 57.874 40.000 8.61 0.00 0.00 2.57
5178 8452 6.672657 ACAGGTAAGGATCAGTTAACATAGGT 59.327 38.462 8.61 0.00 0.00 3.08
5179 8453 7.842743 ACAGGTAAGGATCAGTTAACATAGGTA 59.157 37.037 8.61 0.00 0.00 3.08
5180 8454 8.701895 CAGGTAAGGATCAGTTAACATAGGTAA 58.298 37.037 8.61 0.00 0.00 2.85
5181 8455 9.275572 AGGTAAGGATCAGTTAACATAGGTAAA 57.724 33.333 8.61 0.00 0.00 2.01
5223 8577 0.385751 GCCTCGTATCTGCAGTGCTA 59.614 55.000 17.60 4.84 0.00 3.49
5231 8585 1.002868 CTGCAGTGCTAACAGCCCT 60.003 57.895 17.60 0.00 41.51 5.19
5267 8621 7.533426 CCATTGGAAGCTTTATATGTGATAGC 58.467 38.462 0.00 0.00 0.00 2.97
5268 8622 7.175467 CCATTGGAAGCTTTATATGTGATAGCA 59.825 37.037 0.00 0.00 34.37 3.49
5269 8623 8.570488 CATTGGAAGCTTTATATGTGATAGCAA 58.430 33.333 0.00 0.00 34.37 3.91
5270 8624 8.518430 TTGGAAGCTTTATATGTGATAGCAAA 57.482 30.769 0.00 0.00 34.37 3.68
5271 8625 8.696043 TGGAAGCTTTATATGTGATAGCAAAT 57.304 30.769 0.00 0.00 34.37 2.32
5272 8626 9.791801 TGGAAGCTTTATATGTGATAGCAAATA 57.208 29.630 0.00 0.00 34.37 1.40
5274 8628 9.766277 GAAGCTTTATATGTGATAGCAAATAGC 57.234 33.333 0.00 0.00 46.19 2.97
5293 8647 8.301720 CAAATAGCAATAGCATGGTGTATGAAT 58.698 33.333 7.89 0.00 45.49 2.57
5330 8684 5.749596 TCCAATTATGCGTAGTGATTTGG 57.250 39.130 0.00 0.00 0.00 3.28
5344 8701 7.065324 CGTAGTGATTTGGGCTAATTACTTCAA 59.935 37.037 12.67 0.00 36.26 2.69
5434 8791 6.965866 TCCTAATATATATGTTGCCTCCCTGT 59.034 38.462 5.06 0.00 0.00 4.00
5828 9186 5.639082 AGGTTCTTTTTGTTTGCAACTGAAG 59.361 36.000 0.00 0.00 33.82 3.02
6002 9360 5.947228 ACAGCAATAATATCATTGGACCG 57.053 39.130 0.71 0.00 36.58 4.79
6019 9377 6.155475 TGGACCGATTCTTTTGAACAATTT 57.845 33.333 0.00 0.00 41.77 1.82
6020 9378 7.278461 TGGACCGATTCTTTTGAACAATTTA 57.722 32.000 0.00 0.00 41.77 1.40
6021 9379 7.367285 TGGACCGATTCTTTTGAACAATTTAG 58.633 34.615 0.00 0.00 41.77 1.85
6022 9380 6.308041 GGACCGATTCTTTTGAACAATTTAGC 59.692 38.462 0.00 0.00 41.77 3.09
6023 9381 6.744112 ACCGATTCTTTTGAACAATTTAGCA 58.256 32.000 0.00 0.00 41.77 3.49
6024 9382 7.378181 ACCGATTCTTTTGAACAATTTAGCAT 58.622 30.769 0.00 0.00 41.77 3.79
6025 9383 7.872483 ACCGATTCTTTTGAACAATTTAGCATT 59.128 29.630 0.00 0.00 41.77 3.56
6026 9384 8.164153 CCGATTCTTTTGAACAATTTAGCATTG 58.836 33.333 0.00 0.00 41.77 2.82
6056 9417 1.001633 GTGTCTACATGTTCACCCCGT 59.998 52.381 2.30 0.00 0.00 5.28
6187 9548 4.119556 TGGAGCATAGCTACCTACTGAT 57.880 45.455 0.00 0.00 39.07 2.90
6188 9549 4.082845 TGGAGCATAGCTACCTACTGATC 58.917 47.826 0.00 0.00 39.07 2.92
6189 9550 4.202620 TGGAGCATAGCTACCTACTGATCT 60.203 45.833 8.87 0.00 39.07 2.75
6190 9551 5.014228 TGGAGCATAGCTACCTACTGATCTA 59.986 44.000 8.87 1.44 39.07 1.98
6191 9552 5.355910 GGAGCATAGCTACCTACTGATCTAC 59.644 48.000 8.87 0.00 39.88 2.59
6192 9553 5.258051 AGCATAGCTACCTACTGATCTACC 58.742 45.833 0.00 0.00 36.99 3.18
6193 9554 5.014755 AGCATAGCTACCTACTGATCTACCT 59.985 44.000 0.00 0.00 36.99 3.08
6194 9555 6.215841 AGCATAGCTACCTACTGATCTACCTA 59.784 42.308 0.00 0.00 36.99 3.08
6195 9556 6.316890 GCATAGCTACCTACTGATCTACCTAC 59.683 46.154 0.00 0.00 0.00 3.18
6196 9557 7.626390 CATAGCTACCTACTGATCTACCTACT 58.374 42.308 0.00 0.00 0.00 2.57
6197 9558 5.871834 AGCTACCTACTGATCTACCTACTG 58.128 45.833 0.00 0.00 0.00 2.74
6198 9559 5.607592 AGCTACCTACTGATCTACCTACTGA 59.392 44.000 0.00 0.00 0.00 3.41
6242 9603 6.018262 ACGCACGATATTGCTGTTATTTACAT 60.018 34.615 0.00 0.00 40.62 2.29
6937 10298 2.360475 GAGCTTGGGCACACCTCC 60.360 66.667 4.78 0.00 41.70 4.30
6938 10299 3.927481 GAGCTTGGGCACACCTCCC 62.927 68.421 4.78 0.00 44.17 4.30
6939 10300 3.971702 GCTTGGGCACACCTCCCT 61.972 66.667 0.00 0.00 44.23 4.20
6940 10301 2.846532 CTTGGGCACACCTCCCTT 59.153 61.111 0.00 0.00 44.23 3.95
6941 10302 1.153756 CTTGGGCACACCTCCCTTT 59.846 57.895 0.00 0.00 44.23 3.11
6942 10303 0.469892 CTTGGGCACACCTCCCTTTT 60.470 55.000 0.00 0.00 44.23 2.27
6943 10304 0.031616 TTGGGCACACCTCCCTTTTT 60.032 50.000 0.00 0.00 44.23 1.94
6968 10329 1.137404 CTTTTTCAGATGGCGGGCG 59.863 57.895 0.00 0.00 0.00 6.13
7062 11848 3.974757 GGCGATCGGTACTCGGGG 61.975 72.222 18.30 0.00 39.77 5.73
7148 11934 3.420943 GCACCGGCTGCGATATTT 58.579 55.556 0.00 0.00 35.72 1.40
7149 11935 1.727467 GCACCGGCTGCGATATTTT 59.273 52.632 0.00 0.00 35.72 1.82
7150 11936 0.941542 GCACCGGCTGCGATATTTTA 59.058 50.000 0.00 0.00 35.72 1.52
7151 11937 1.332375 GCACCGGCTGCGATATTTTAA 59.668 47.619 0.00 0.00 35.72 1.52
7152 11938 2.223386 GCACCGGCTGCGATATTTTAAA 60.223 45.455 0.00 0.00 35.72 1.52
7153 11939 3.732471 GCACCGGCTGCGATATTTTAAAA 60.732 43.478 0.00 2.51 35.72 1.52
7154 11940 4.416620 CACCGGCTGCGATATTTTAAAAA 58.583 39.130 0.00 0.00 0.00 1.94
7177 11963 9.920946 AAAAACATATGTACTCCCAGTTCATAT 57.079 29.630 9.21 9.00 44.59 1.78
7178 11964 9.920946 AAAACATATGTACTCCCAGTTCATATT 57.079 29.630 9.21 0.00 42.62 1.28
7179 11965 8.908786 AACATATGTACTCCCAGTTCATATTG 57.091 34.615 9.21 9.92 42.62 1.90
7180 11966 8.262601 ACATATGTACTCCCAGTTCATATTGA 57.737 34.615 6.56 0.00 42.62 2.57
7181 11967 8.713971 ACATATGTACTCCCAGTTCATATTGAA 58.286 33.333 6.56 0.00 42.62 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 9.807649 CATGATCATGATTTCATATGCATGAAT 57.192 29.630 28.37 12.06 46.87 2.57
15 16 8.250332 CCATGATCATGATTTCATATGCATGAA 58.750 33.333 32.71 3.73 46.87 2.57
17 18 7.547227 ACCATGATCATGATTTCATATGCATG 58.453 34.615 32.71 14.50 41.20 4.06
18 19 7.718334 ACCATGATCATGATTTCATATGCAT 57.282 32.000 32.71 3.79 41.20 3.96
160 163 1.701292 AGTAAACGGTTAGGCCCAGTT 59.299 47.619 0.00 0.00 0.00 3.16
162 165 2.484742 AAGTAAACGGTTAGGCCCAG 57.515 50.000 0.00 0.00 0.00 4.45
178 181 1.592064 CGCAAAATTTGGCCCAAAGT 58.408 45.000 15.21 9.43 36.76 2.66
179 182 0.873721 CCGCAAAATTTGGCCCAAAG 59.126 50.000 15.21 1.93 36.76 2.77
225 228 0.313672 TCCACAAACGAGCAAATGGC 59.686 50.000 0.00 0.00 45.30 4.40
226 229 1.335872 GGTCCACAAACGAGCAAATGG 60.336 52.381 0.00 0.00 0.00 3.16
227 230 1.335872 GGGTCCACAAACGAGCAAATG 60.336 52.381 0.00 0.00 0.00 2.32
228 231 0.958822 GGGTCCACAAACGAGCAAAT 59.041 50.000 0.00 0.00 0.00 2.32
229 232 1.104577 GGGGTCCACAAACGAGCAAA 61.105 55.000 0.00 0.00 0.00 3.68
230 233 1.527380 GGGGTCCACAAACGAGCAA 60.527 57.895 0.00 0.00 0.00 3.91
232 235 0.035739 TTAGGGGTCCACAAACGAGC 59.964 55.000 0.00 0.00 0.00 5.03
233 236 2.554370 TTTAGGGGTCCACAAACGAG 57.446 50.000 0.00 0.00 0.00 4.18
253 256 3.862845 GTGACCACAAACGAGCAATTTTT 59.137 39.130 0.00 0.00 0.00 1.94
254 257 3.119316 TGTGACCACAAACGAGCAATTTT 60.119 39.130 0.00 0.00 38.56 1.82
255 258 2.425312 TGTGACCACAAACGAGCAATTT 59.575 40.909 0.00 0.00 38.56 1.82
256 259 2.020720 TGTGACCACAAACGAGCAATT 58.979 42.857 0.00 0.00 38.56 2.32
257 260 1.333619 GTGTGACCACAAACGAGCAAT 59.666 47.619 4.21 0.00 43.77 3.56
258 261 0.730265 GTGTGACCACAAACGAGCAA 59.270 50.000 4.21 0.00 43.77 3.91
259 262 0.107897 AGTGTGACCACAAACGAGCA 60.108 50.000 4.21 0.00 44.39 4.26
260 263 1.860676 TAGTGTGACCACAAACGAGC 58.139 50.000 4.21 0.00 44.39 5.03
261 264 2.736721 CCATAGTGTGACCACAAACGAG 59.263 50.000 4.21 0.00 44.39 4.18
262 265 2.549134 CCCATAGTGTGACCACAAACGA 60.549 50.000 4.21 0.00 44.39 3.85
263 266 1.804151 CCCATAGTGTGACCACAAACG 59.196 52.381 4.21 0.00 44.39 3.60
264 267 1.539827 GCCCATAGTGTGACCACAAAC 59.460 52.381 4.21 0.00 44.39 2.93
265 268 1.423541 AGCCCATAGTGTGACCACAAA 59.576 47.619 4.21 0.00 44.39 2.83
266 269 1.064003 AGCCCATAGTGTGACCACAA 58.936 50.000 4.21 0.00 44.39 3.33
267 270 1.945580 TAGCCCATAGTGTGACCACA 58.054 50.000 0.00 0.00 44.39 4.17
268 271 3.560636 AATAGCCCATAGTGTGACCAC 57.439 47.619 0.00 0.00 42.17 4.16
269 272 3.371487 CCAAATAGCCCATAGTGTGACCA 60.371 47.826 0.00 0.00 0.00 4.02
270 273 3.214328 CCAAATAGCCCATAGTGTGACC 58.786 50.000 0.00 0.00 0.00 4.02
271 274 2.618709 GCCAAATAGCCCATAGTGTGAC 59.381 50.000 0.00 0.00 0.00 3.67
272 275 2.240921 TGCCAAATAGCCCATAGTGTGA 59.759 45.455 0.00 0.00 0.00 3.58
273 276 2.653726 TGCCAAATAGCCCATAGTGTG 58.346 47.619 0.00 0.00 0.00 3.82
274 277 3.225104 CATGCCAAATAGCCCATAGTGT 58.775 45.455 0.00 0.00 0.00 3.55
275 278 2.029649 GCATGCCAAATAGCCCATAGTG 60.030 50.000 6.36 0.00 0.00 2.74
276 279 2.242043 GCATGCCAAATAGCCCATAGT 58.758 47.619 6.36 0.00 0.00 2.12
277 280 2.029649 GTGCATGCCAAATAGCCCATAG 60.030 50.000 16.68 0.00 0.00 2.23
278 281 1.962807 GTGCATGCCAAATAGCCCATA 59.037 47.619 16.68 0.00 0.00 2.74
279 282 0.754472 GTGCATGCCAAATAGCCCAT 59.246 50.000 16.68 0.00 0.00 4.00
280 283 1.665264 CGTGCATGCCAAATAGCCCA 61.665 55.000 16.68 0.00 0.00 5.36
281 284 1.066257 CGTGCATGCCAAATAGCCC 59.934 57.895 16.68 0.00 0.00 5.19
282 285 1.066257 CCGTGCATGCCAAATAGCC 59.934 57.895 16.68 0.00 0.00 3.93
283 286 1.589727 GCCGTGCATGCCAAATAGC 60.590 57.895 16.68 5.87 0.00 2.97
284 287 1.298563 CGCCGTGCATGCCAAATAG 60.299 57.895 16.68 0.00 0.00 1.73
285 288 1.308783 TTCGCCGTGCATGCCAAATA 61.309 50.000 16.68 0.00 0.00 1.40
286 289 2.152297 TTTCGCCGTGCATGCCAAAT 62.152 50.000 16.68 0.00 0.00 2.32
287 290 2.745906 CTTTCGCCGTGCATGCCAAA 62.746 55.000 16.68 2.26 0.00 3.28
288 291 3.266230 CTTTCGCCGTGCATGCCAA 62.266 57.895 16.68 0.00 0.00 4.52
289 292 3.736100 CTTTCGCCGTGCATGCCA 61.736 61.111 16.68 0.00 0.00 4.92
290 293 3.430862 TCTTTCGCCGTGCATGCC 61.431 61.111 16.68 5.63 0.00 4.40
300 303 5.854157 TCTTGTTTATGAATCGTCTTTCGC 58.146 37.500 0.00 0.00 39.67 4.70
301 304 8.880768 AATTCTTGTTTATGAATCGTCTTTCG 57.119 30.769 0.00 0.00 41.41 3.46
306 309 9.922305 CTTAGGAATTCTTGTTTATGAATCGTC 57.078 33.333 5.23 0.00 31.61 4.20
308 311 7.857885 GGCTTAGGAATTCTTGTTTATGAATCG 59.142 37.037 5.23 0.00 31.61 3.34
309 312 8.138074 GGGCTTAGGAATTCTTGTTTATGAATC 58.862 37.037 5.23 0.00 31.61 2.52
316 319 3.441101 GGGGGCTTAGGAATTCTTGTTT 58.559 45.455 5.23 0.00 0.00 2.83
337 340 6.016360 TCAGTCAACAAAACCATGAGTATTGG 60.016 38.462 0.00 0.00 40.26 3.16
339 342 7.765695 ATCAGTCAACAAAACCATGAGTATT 57.234 32.000 0.00 0.00 0.00 1.89
340 343 7.882791 TGTATCAGTCAACAAAACCATGAGTAT 59.117 33.333 0.00 0.00 0.00 2.12
374 378 1.747355 CATGGTGGTTTGGAGCTGATC 59.253 52.381 0.00 0.00 0.00 2.92
376 380 0.251297 CCATGGTGGTTTGGAGCTGA 60.251 55.000 2.57 0.00 34.81 4.26
384 388 2.115052 TCTGCGCCATGGTGGTTT 59.885 55.556 26.23 0.00 40.46 3.27
386 390 3.907260 CTGTCTGCGCCATGGTGGT 62.907 63.158 26.23 0.00 40.46 4.16
387 391 3.129502 CTGTCTGCGCCATGGTGG 61.130 66.667 26.23 13.53 41.55 4.61
388 392 3.807538 GCTGTCTGCGCCATGGTG 61.808 66.667 21.43 21.43 0.00 4.17
411 415 1.065709 ACCACACCGATCATACCCAAC 60.066 52.381 0.00 0.00 0.00 3.77
412 416 1.281419 ACCACACCGATCATACCCAA 58.719 50.000 0.00 0.00 0.00 4.12
413 417 2.162264 TACCACACCGATCATACCCA 57.838 50.000 0.00 0.00 0.00 4.51
414 418 2.367567 ACATACCACACCGATCATACCC 59.632 50.000 0.00 0.00 0.00 3.69
415 419 3.746045 ACATACCACACCGATCATACC 57.254 47.619 0.00 0.00 0.00 2.73
416 420 4.521639 TCCTACATACCACACCGATCATAC 59.478 45.833 0.00 0.00 0.00 2.39
417 421 4.732065 TCCTACATACCACACCGATCATA 58.268 43.478 0.00 0.00 0.00 2.15
418 422 3.572642 TCCTACATACCACACCGATCAT 58.427 45.455 0.00 0.00 0.00 2.45
423 2261 2.997986 GTTGTTCCTACATACCACACCG 59.002 50.000 0.00 0.00 33.44 4.94
432 2270 2.635915 TGAACCTCCGTTGTTCCTACAT 59.364 45.455 0.00 0.00 41.08 2.29
435 2273 4.091549 AGTATGAACCTCCGTTGTTCCTA 58.908 43.478 0.00 0.00 41.08 2.94
438 2276 3.435671 CCAAGTATGAACCTCCGTTGTTC 59.564 47.826 0.00 0.00 41.91 3.18
446 2284 0.106669 GGCCCCCAAGTATGAACCTC 60.107 60.000 0.00 0.00 0.00 3.85
447 2285 0.552615 AGGCCCCCAAGTATGAACCT 60.553 55.000 0.00 0.00 0.00 3.50
452 2290 0.395724 GGTGAAGGCCCCCAAGTATG 60.396 60.000 0.00 0.00 0.00 2.39
460 2298 0.178961 AAAACTCTGGTGAAGGCCCC 60.179 55.000 0.00 0.00 0.00 5.80
463 2301 3.969899 CTTCAAAAACTCTGGTGAAGGC 58.030 45.455 4.68 0.00 42.05 4.35
467 2305 3.694072 CACACCTTCAAAAACTCTGGTGA 59.306 43.478 15.59 0.00 45.37 4.02
469 2307 3.694566 GTCACACCTTCAAAAACTCTGGT 59.305 43.478 0.00 0.00 0.00 4.00
483 2321 1.000955 GTTGTCGGATCAGTCACACCT 59.999 52.381 0.00 0.00 0.00 4.00
485 2323 2.029828 AGAGTTGTCGGATCAGTCACAC 60.030 50.000 0.00 0.00 0.00 3.82
499 2337 0.249911 GCCAACACCTCGAGAGTTGT 60.250 55.000 30.88 21.46 40.64 3.32
512 2350 1.961793 AGCTTTCTTACACGCCAACA 58.038 45.000 0.00 0.00 0.00 3.33
513 2351 3.349488 AAAGCTTTCTTACACGCCAAC 57.651 42.857 5.69 0.00 31.02 3.77
516 2354 2.159558 GGCTAAAGCTTTCTTACACGCC 60.160 50.000 16.57 12.72 41.70 5.68
522 2360 2.747446 CGCAAGGGCTAAAGCTTTCTTA 59.253 45.455 16.57 0.00 41.70 2.10
525 2363 1.131315 CTCGCAAGGGCTAAAGCTTTC 59.869 52.381 16.57 1.70 41.70 2.62
526 2364 1.168714 CTCGCAAGGGCTAAAGCTTT 58.831 50.000 17.30 17.30 41.70 3.51
540 2378 2.292845 TGTTTGCATCAAATCACTCGCA 59.707 40.909 0.00 0.00 35.74 5.10
561 2399 1.208535 TCCCAAGTGACAACAACTCGT 59.791 47.619 0.00 0.00 0.00 4.18
563 2401 2.614057 CAGTCCCAAGTGACAACAACTC 59.386 50.000 0.00 0.00 37.73 3.01
565 2403 1.065551 GCAGTCCCAAGTGACAACAAC 59.934 52.381 0.00 0.00 37.73 3.32
588 2426 7.474190 CCTTTCTTGTTGTTTGCAATGATTTT 58.526 30.769 0.00 0.00 36.92 1.82
594 2432 3.871485 TGCCTTTCTTGTTGTTTGCAAT 58.129 36.364 0.00 0.00 36.92 3.56
604 2442 1.428912 TCCCTCCATTGCCTTTCTTGT 59.571 47.619 0.00 0.00 0.00 3.16
605 2443 2.097825 CTCCCTCCATTGCCTTTCTTG 58.902 52.381 0.00 0.00 0.00 3.02
607 2445 0.033699 GCTCCCTCCATTGCCTTTCT 60.034 55.000 0.00 0.00 0.00 2.52
608 2446 1.039785 GGCTCCCTCCATTGCCTTTC 61.040 60.000 0.00 0.00 41.92 2.62
611 2449 2.011044 ATGGCTCCCTCCATTGCCT 61.011 57.895 0.00 0.00 44.04 4.75
612 2450 1.831286 CATGGCTCCCTCCATTGCC 60.831 63.158 0.00 0.00 44.04 4.52
613 2451 1.831286 CCATGGCTCCCTCCATTGC 60.831 63.158 0.00 0.00 44.04 3.56
614 2452 1.831286 GCCATGGCTCCCTCCATTG 60.831 63.158 29.98 0.00 44.04 2.82
617 2455 2.931191 TATGGCCATGGCTCCCTCCA 62.931 60.000 34.70 23.24 41.60 3.86
619 2457 0.407139 AATATGGCCATGGCTCCCTC 59.593 55.000 34.70 19.00 41.60 4.30
620 2458 1.759101 TAATATGGCCATGGCTCCCT 58.241 50.000 34.70 19.00 41.60 4.20
626 2464 9.192642 TGAATTTCTCATATAATATGGCCATGG 57.807 33.333 29.04 7.63 0.00 3.66
666 2504 2.544267 CGAAAGAGCAAGACCGAAACTT 59.456 45.455 0.00 0.00 0.00 2.66
673 2511 2.612212 TCAAACACGAAAGAGCAAGACC 59.388 45.455 0.00 0.00 0.00 3.85
674 2512 3.944422 TCAAACACGAAAGAGCAAGAC 57.056 42.857 0.00 0.00 0.00 3.01
690 2528 5.639506 CAGTATTCGAGGCTCTTTCTTCAAA 59.360 40.000 13.50 0.00 0.00 2.69
737 2575 9.083080 ACTATGCGCCTCAATTTTTATTTTTAC 57.917 29.630 4.18 0.00 0.00 2.01
742 2580 6.511767 CGAGACTATGCGCCTCAATTTTTATT 60.512 38.462 4.18 0.00 0.00 1.40
743 2581 5.050091 CGAGACTATGCGCCTCAATTTTTAT 60.050 40.000 4.18 0.00 0.00 1.40
744 2582 4.270084 CGAGACTATGCGCCTCAATTTTTA 59.730 41.667 4.18 0.00 0.00 1.52
745 2583 3.063997 CGAGACTATGCGCCTCAATTTTT 59.936 43.478 4.18 0.00 0.00 1.94
773 2611 4.893608 TCTACTGCAAGATTAAGTGTGCA 58.106 39.130 8.81 8.81 44.36 4.57
774 2612 5.276584 CGATCTACTGCAAGATTAAGTGTGC 60.277 44.000 2.47 1.20 36.33 4.57
790 2628 3.146066 GAGCCAGAGATGACGATCTACT 58.854 50.000 0.00 0.00 39.19 2.57
791 2629 2.227865 GGAGCCAGAGATGACGATCTAC 59.772 54.545 0.00 0.00 39.19 2.59
795 2633 1.039068 CAGGAGCCAGAGATGACGAT 58.961 55.000 0.00 0.00 0.00 3.73
797 2635 1.227205 GCAGGAGCCAGAGATGACG 60.227 63.158 0.00 0.00 33.58 4.35
817 2655 7.723109 AAGGAATATATCTTAAACCAGGGGT 57.277 36.000 0.00 0.00 37.65 4.95
878 3784 7.120789 TCGTTTTCCTTTTATAAAGACGGAC 57.879 36.000 10.65 2.76 0.00 4.79
1217 4123 5.815233 TGAAGGAACAGAGAAGTGAAGAT 57.185 39.130 0.00 0.00 0.00 2.40
1221 4127 3.383505 TCGTTGAAGGAACAGAGAAGTGA 59.616 43.478 0.00 0.00 33.73 3.41
1223 4129 3.385111 ACTCGTTGAAGGAACAGAGAAGT 59.615 43.478 0.00 0.00 38.00 3.01
1266 4172 1.001641 GGGCACATGGCTGAAGACT 60.002 57.895 5.33 0.00 44.01 3.24
1267 4173 0.610232 AAGGGCACATGGCTGAAGAC 60.610 55.000 5.33 0.00 44.01 3.01
1302 4208 4.752101 CGGATGATAGGTTCCACAGAAATC 59.248 45.833 0.00 0.00 32.58 2.17
1308 4230 2.959030 CTCTCGGATGATAGGTTCCACA 59.041 50.000 0.00 0.00 31.99 4.17
1309 4231 2.959707 ACTCTCGGATGATAGGTTCCAC 59.040 50.000 0.00 0.00 31.99 4.02
1310 4232 3.223435 GACTCTCGGATGATAGGTTCCA 58.777 50.000 0.00 0.00 31.99 3.53
1311 4233 2.226912 CGACTCTCGGATGATAGGTTCC 59.773 54.545 0.00 0.00 36.00 3.62
1312 4234 3.058777 GTCGACTCTCGGATGATAGGTTC 60.059 52.174 8.70 0.00 40.88 3.62
1313 4235 2.879646 GTCGACTCTCGGATGATAGGTT 59.120 50.000 8.70 0.00 40.88 3.50
1314 4236 2.105134 AGTCGACTCTCGGATGATAGGT 59.895 50.000 13.58 0.00 40.88 3.08
1315 4237 2.482336 CAGTCGACTCTCGGATGATAGG 59.518 54.545 16.96 0.00 40.88 2.57
1316 4238 3.059257 CACAGTCGACTCTCGGATGATAG 60.059 52.174 16.96 2.12 40.88 2.08
1317 4239 2.872858 CACAGTCGACTCTCGGATGATA 59.127 50.000 16.96 0.00 40.88 2.15
1318 4240 1.673400 CACAGTCGACTCTCGGATGAT 59.327 52.381 16.96 0.00 40.88 2.45
1319 4241 1.087501 CACAGTCGACTCTCGGATGA 58.912 55.000 16.96 0.00 40.88 2.92
1320 4242 0.099613 CCACAGTCGACTCTCGGATG 59.900 60.000 16.96 6.11 40.88 3.51
1321 4243 0.035343 TCCACAGTCGACTCTCGGAT 60.035 55.000 16.96 0.00 40.88 4.18
1322 4244 0.954449 GTCCACAGTCGACTCTCGGA 60.954 60.000 16.96 18.03 40.88 4.55
1323 4245 1.235281 TGTCCACAGTCGACTCTCGG 61.235 60.000 16.96 15.95 40.88 4.63
1537 4462 2.019249 CATCTGGCATCAACACCGATT 58.981 47.619 0.00 0.00 0.00 3.34
1824 4757 1.097547 ACGATTAGCACAGGCCATGC 61.098 55.000 21.30 21.30 42.56 4.06
1825 4758 0.659427 CACGATTAGCACAGGCCATG 59.341 55.000 5.01 3.61 42.56 3.66
1826 4759 1.097547 GCACGATTAGCACAGGCCAT 61.098 55.000 5.01 0.00 42.56 4.40
1827 4760 1.745115 GCACGATTAGCACAGGCCA 60.745 57.895 5.01 0.00 42.56 5.36
1828 4761 2.472909 GGCACGATTAGCACAGGCC 61.473 63.158 0.00 0.00 42.56 5.19
1829 4762 1.450312 AGGCACGATTAGCACAGGC 60.450 57.895 0.00 0.00 41.61 4.85
1830 4763 1.091771 CCAGGCACGATTAGCACAGG 61.092 60.000 0.00 0.00 0.00 4.00
1831 4764 1.709147 GCCAGGCACGATTAGCACAG 61.709 60.000 6.55 0.00 0.00 3.66
1832 4765 1.745115 GCCAGGCACGATTAGCACA 60.745 57.895 6.55 0.00 0.00 4.57
1833 4766 2.472909 GGCCAGGCACGATTAGCAC 61.473 63.158 15.19 0.00 0.00 4.40
1834 4767 2.124736 GGCCAGGCACGATTAGCA 60.125 61.111 15.19 0.00 0.00 3.49
1835 4768 2.902343 GGGCCAGGCACGATTAGC 60.902 66.667 15.19 0.00 0.00 3.09
1860 4793 1.867919 TTAAAACGTGCCATGGCGGG 61.868 55.000 30.87 25.76 45.51 6.13
1861 4794 0.172352 ATTAAAACGTGCCATGGCGG 59.828 50.000 30.87 26.12 45.51 6.13
1862 4795 2.715268 CTATTAAAACGTGCCATGGCG 58.285 47.619 30.87 20.22 45.51 5.69
1863 4796 2.459934 GCTATTAAAACGTGCCATGGC 58.540 47.619 30.54 30.54 42.35 4.40
1864 4797 2.540769 CGGCTATTAAAACGTGCCATGG 60.541 50.000 7.63 7.63 43.38 3.66
1865 4798 2.540769 CCGGCTATTAAAACGTGCCATG 60.541 50.000 10.91 0.00 43.38 3.66
1866 4799 1.673920 CCGGCTATTAAAACGTGCCAT 59.326 47.619 10.91 0.00 43.38 4.40
1867 4800 1.088306 CCGGCTATTAAAACGTGCCA 58.912 50.000 10.91 0.00 43.38 4.92
1868 4801 0.379316 CCCGGCTATTAAAACGTGCC 59.621 55.000 0.00 0.90 40.14 5.01
1869 4802 0.248336 GCCCGGCTATTAAAACGTGC 60.248 55.000 0.71 0.00 0.00 5.34
1870 4803 0.379316 GGCCCGGCTATTAAAACGTG 59.621 55.000 9.86 0.00 0.00 4.49
1871 4804 1.091197 CGGCCCGGCTATTAAAACGT 61.091 55.000 9.86 0.00 0.00 3.99
1872 4805 1.091197 ACGGCCCGGCTATTAAAACG 61.091 55.000 8.57 4.09 0.00 3.60
1873 4806 0.379316 CACGGCCCGGCTATTAAAAC 59.621 55.000 8.57 0.00 0.00 2.43
1874 4807 1.378124 GCACGGCCCGGCTATTAAAA 61.378 55.000 8.57 0.00 0.00 1.52
1875 4808 1.820481 GCACGGCCCGGCTATTAAA 60.820 57.895 8.57 0.00 0.00 1.52
1876 4809 2.203098 GCACGGCCCGGCTATTAA 60.203 61.111 8.57 0.00 0.00 1.40
1877 4810 4.244463 GGCACGGCCCGGCTATTA 62.244 66.667 8.57 0.00 44.06 0.98
1915 4848 3.512154 TTGTGCCTGGGCCAAGGAG 62.512 63.158 32.15 4.41 40.02 3.69
1916 4849 3.506743 TTGTGCCTGGGCCAAGGA 61.507 61.111 32.15 12.43 40.02 3.36
1917 4850 3.305516 GTTGTGCCTGGGCCAAGG 61.306 66.667 23.56 23.56 41.09 3.61
1918 4851 1.909781 ATGTTGTGCCTGGGCCAAG 60.910 57.895 8.04 0.91 41.09 3.61
1919 4852 2.200930 ATGTTGTGCCTGGGCCAA 59.799 55.556 8.04 9.75 41.09 4.52
1920 4853 2.444004 ATCATGTTGTGCCTGGGCCA 62.444 55.000 5.85 5.85 41.09 5.36
1921 4854 1.259840 AATCATGTTGTGCCTGGGCC 61.260 55.000 9.28 0.00 41.09 5.80
1922 4855 1.406539 CTAATCATGTTGTGCCTGGGC 59.593 52.381 4.43 4.43 42.35 5.36
1923 4856 2.726821 ACTAATCATGTTGTGCCTGGG 58.273 47.619 0.00 0.00 0.00 4.45
1924 4857 5.640732 GTTTACTAATCATGTTGTGCCTGG 58.359 41.667 0.00 0.00 0.00 4.45
1925 4858 5.323900 CGTTTACTAATCATGTTGTGCCTG 58.676 41.667 0.00 0.00 0.00 4.85
1926 4859 4.394920 CCGTTTACTAATCATGTTGTGCCT 59.605 41.667 0.00 0.00 0.00 4.75
1927 4860 4.438200 CCCGTTTACTAATCATGTTGTGCC 60.438 45.833 0.00 0.00 0.00 5.01
1928 4861 4.658071 CCCGTTTACTAATCATGTTGTGC 58.342 43.478 0.00 0.00 0.00 4.57
1929 4862 4.438200 GGCCCGTTTACTAATCATGTTGTG 60.438 45.833 0.00 0.00 0.00 3.33
1930 4863 3.692593 GGCCCGTTTACTAATCATGTTGT 59.307 43.478 0.00 0.00 0.00 3.32
1931 4864 3.692101 TGGCCCGTTTACTAATCATGTTG 59.308 43.478 0.00 0.00 0.00 3.33
1932 4865 3.945285 CTGGCCCGTTTACTAATCATGTT 59.055 43.478 0.00 0.00 0.00 2.71
1933 4866 3.541632 CTGGCCCGTTTACTAATCATGT 58.458 45.455 0.00 0.00 0.00 3.21
1934 4867 2.290641 GCTGGCCCGTTTACTAATCATG 59.709 50.000 0.00 0.00 0.00 3.07
1935 4868 2.572290 GCTGGCCCGTTTACTAATCAT 58.428 47.619 0.00 0.00 0.00 2.45
1936 4869 1.407712 GGCTGGCCCGTTTACTAATCA 60.408 52.381 0.00 0.00 0.00 2.57
1937 4870 1.306148 GGCTGGCCCGTTTACTAATC 58.694 55.000 0.00 0.00 0.00 1.75
1938 4871 3.489391 GGCTGGCCCGTTTACTAAT 57.511 52.632 0.00 0.00 0.00 1.73
1955 4888 2.900337 GCTAAACGGGCCATCGGG 60.900 66.667 4.39 0.00 37.18 5.14
1956 4889 2.124901 TGCTAAACGGGCCATCGG 60.125 61.111 4.39 0.00 0.00 4.18
1957 4890 1.743623 TGTGCTAAACGGGCCATCG 60.744 57.895 4.39 1.48 0.00 3.84
1958 4891 0.676782 AGTGTGCTAAACGGGCCATC 60.677 55.000 4.39 0.00 0.00 3.51
1959 4892 0.960364 CAGTGTGCTAAACGGGCCAT 60.960 55.000 4.39 0.00 0.00 4.40
1960 4893 1.599518 CAGTGTGCTAAACGGGCCA 60.600 57.895 4.39 0.00 0.00 5.36
1961 4894 2.332654 CCAGTGTGCTAAACGGGCC 61.333 63.158 0.00 0.00 0.00 5.80
1962 4895 2.332654 CCCAGTGTGCTAAACGGGC 61.333 63.158 0.00 0.00 32.19 6.13
1963 4896 2.332654 GCCCAGTGTGCTAAACGGG 61.333 63.158 0.00 0.00 35.66 5.28
1964 4897 1.302511 AGCCCAGTGTGCTAAACGG 60.303 57.895 0.00 0.00 37.28 4.44
1965 4898 1.868997 CAGCCCAGTGTGCTAAACG 59.131 57.895 0.00 0.00 36.81 3.60
1966 4899 1.172180 TGCAGCCCAGTGTGCTAAAC 61.172 55.000 0.00 0.00 40.54 2.01
1967 4900 1.150308 TGCAGCCCAGTGTGCTAAA 59.850 52.632 0.00 0.00 40.54 1.85
1968 4901 1.600636 GTGCAGCCCAGTGTGCTAA 60.601 57.895 0.00 0.00 40.54 3.09
1969 4902 2.032528 GTGCAGCCCAGTGTGCTA 59.967 61.111 0.00 0.00 40.54 3.49
1970 4903 2.989173 AATGTGCAGCCCAGTGTGCT 62.989 55.000 0.00 0.00 40.54 4.40
1971 4904 2.091102 AAATGTGCAGCCCAGTGTGC 62.091 55.000 0.00 0.00 40.29 4.57
1972 4905 0.390124 AAAATGTGCAGCCCAGTGTG 59.610 50.000 0.00 0.00 0.00 3.82
1973 4906 0.675633 GAAAATGTGCAGCCCAGTGT 59.324 50.000 0.00 0.00 0.00 3.55
1974 4907 0.675083 TGAAAATGTGCAGCCCAGTG 59.325 50.000 0.00 0.00 0.00 3.66
1975 4908 0.963962 CTGAAAATGTGCAGCCCAGT 59.036 50.000 0.00 0.00 0.00 4.00
1976 4909 3.806591 CTGAAAATGTGCAGCCCAG 57.193 52.632 0.00 0.00 0.00 4.45
1981 4914 2.400399 CAACAGGCTGAAAATGTGCAG 58.600 47.619 23.66 0.00 35.28 4.41
1982 4915 1.068895 CCAACAGGCTGAAAATGTGCA 59.931 47.619 23.66 0.00 0.00 4.57
1983 4916 1.606224 CCCAACAGGCTGAAAATGTGC 60.606 52.381 23.66 0.00 0.00 4.57
1984 4917 2.443887 CCCAACAGGCTGAAAATGTG 57.556 50.000 23.66 8.53 0.00 3.21
1995 4928 1.256812 CCTAAAACCAGCCCAACAGG 58.743 55.000 0.00 0.00 39.47 4.00
1996 4929 0.603065 GCCTAAAACCAGCCCAACAG 59.397 55.000 0.00 0.00 0.00 3.16
1997 4930 0.830023 GGCCTAAAACCAGCCCAACA 60.830 55.000 0.00 0.00 41.00 3.33
1998 4931 1.972198 GGCCTAAAACCAGCCCAAC 59.028 57.895 0.00 0.00 41.00 3.77
1999 4932 4.531351 GGCCTAAAACCAGCCCAA 57.469 55.556 0.00 0.00 41.00 4.12
2003 4936 2.031870 CCCAATAGGCCTAAAACCAGC 58.968 52.381 18.42 0.00 0.00 4.85
2071 5004 1.785768 GGCACGCCCGTTTAATTTTT 58.214 45.000 0.00 0.00 0.00 1.94
2072 5005 3.500455 GGCACGCCCGTTTAATTTT 57.500 47.368 0.00 0.00 0.00 1.82
2145 5078 3.428282 CACGGGCTAAACGGGCAC 61.428 66.667 0.00 0.00 35.23 5.01
2197 5130 3.883744 AAACAGGTCAGCCCGCGAG 62.884 63.158 8.23 0.00 38.74 5.03
2198 5131 3.936203 AAACAGGTCAGCCCGCGA 61.936 61.111 8.23 0.00 38.74 5.87
2199 5132 3.726517 CAAACAGGTCAGCCCGCG 61.727 66.667 0.00 0.00 38.74 6.46
2200 5133 3.365265 CCAAACAGGTCAGCCCGC 61.365 66.667 0.00 0.00 38.74 6.13
2209 5142 2.672996 CAGGCCGGACCAAACAGG 60.673 66.667 1.76 0.00 43.14 4.00
2210 5143 1.106944 AAACAGGCCGGACCAAACAG 61.107 55.000 10.86 0.00 43.14 3.16
2211 5144 1.076632 AAACAGGCCGGACCAAACA 60.077 52.632 10.86 0.00 43.14 2.83
2212 5145 1.362355 CAAACAGGCCGGACCAAAC 59.638 57.895 10.86 0.00 43.14 2.93
2213 5146 1.830408 CCAAACAGGCCGGACCAAA 60.830 57.895 10.86 0.00 43.14 3.28
2214 5147 2.203422 CCAAACAGGCCGGACCAA 60.203 61.111 10.86 0.00 43.14 3.67
2223 5156 1.490490 TCCTATAGCTGGCCAAACAGG 59.510 52.381 7.01 9.46 38.90 4.00
2224 5157 3.498774 ATCCTATAGCTGGCCAAACAG 57.501 47.619 7.01 0.00 41.41 3.16
2225 5158 3.973973 ACTATCCTATAGCTGGCCAAACA 59.026 43.478 7.01 0.00 0.00 2.83
2226 5159 4.625607 ACTATCCTATAGCTGGCCAAAC 57.374 45.455 7.01 1.16 0.00 2.93
2227 5160 4.658435 TGAACTATCCTATAGCTGGCCAAA 59.342 41.667 7.01 0.00 0.00 3.28
2228 5161 4.231273 TGAACTATCCTATAGCTGGCCAA 58.769 43.478 7.01 0.00 0.00 4.52
2229 5162 3.834813 CTGAACTATCCTATAGCTGGCCA 59.165 47.826 4.71 4.71 0.00 5.36
2230 5163 3.835395 ACTGAACTATCCTATAGCTGGCC 59.165 47.826 0.00 0.00 0.00 5.36
2231 5164 5.476091 AACTGAACTATCCTATAGCTGGC 57.524 43.478 0.00 0.00 0.00 4.85
2232 5165 8.643324 ACTAAAACTGAACTATCCTATAGCTGG 58.357 37.037 0.00 0.00 0.00 4.85
2765 5803 0.682852 GTATACCATGGGGCGCTACA 59.317 55.000 18.09 7.26 37.90 2.74
2766 5804 0.682852 TGTATACCATGGGGCGCTAC 59.317 55.000 18.09 10.04 37.90 3.58
2776 5814 9.342308 CAAGGAATAGAAACATGTGTATACCAT 57.658 33.333 0.00 0.94 0.00 3.55
2792 5830 7.042051 GCGATGCAAACTATTACAAGGAATAGA 60.042 37.037 16.87 0.00 40.46 1.98
3342 6380 5.278957 GGCAAACTCCTAAATGAGCTGAAAA 60.279 40.000 0.00 0.00 35.72 2.29
3678 6922 8.217131 TCCATAGACATGACAATTCAATTCAG 57.783 34.615 0.00 0.00 34.61 3.02
3795 7039 6.896021 ACATACGCTACTAGGTAATGTCAT 57.104 37.500 0.00 0.00 0.00 3.06
4151 7424 7.361201 GCTTTTGGAAAAATAAAGATCTTGGCC 60.361 37.037 9.17 0.00 32.03 5.36
4204 7477 6.688578 AGCACGAGTTAAATAAGAGTCAAGA 58.311 36.000 0.00 0.00 0.00 3.02
4293 7566 6.237648 CCCAACATAATAGTCGTTCACGTAAC 60.238 42.308 0.00 0.00 40.80 2.50
4687 7960 3.011032 AGAGAAGGTCATGGAAGGCAAAT 59.989 43.478 0.00 0.00 0.00 2.32
4728 8001 8.420222 AGTGAATCCAGAGTCTAGAAATGTATG 58.580 37.037 0.00 0.00 0.00 2.39
4729 8002 8.546083 AGTGAATCCAGAGTCTAGAAATGTAT 57.454 34.615 0.00 0.00 0.00 2.29
4730 8003 7.962995 AGTGAATCCAGAGTCTAGAAATGTA 57.037 36.000 0.00 0.00 0.00 2.29
4731 8004 6.865834 AGTGAATCCAGAGTCTAGAAATGT 57.134 37.500 0.00 0.00 0.00 2.71
4860 8133 0.169672 CTGCAATTCTTGTGCCTCCG 59.830 55.000 0.00 0.00 41.49 4.63
5151 8425 8.871125 CCTATGTTAACTGATCCTTACCTGTAT 58.129 37.037 7.22 0.00 0.00 2.29
5152 8426 7.842743 ACCTATGTTAACTGATCCTTACCTGTA 59.157 37.037 7.22 0.00 0.00 2.74
5153 8427 6.672657 ACCTATGTTAACTGATCCTTACCTGT 59.327 38.462 7.22 0.00 0.00 4.00
5154 8428 7.125792 ACCTATGTTAACTGATCCTTACCTG 57.874 40.000 7.22 0.00 0.00 4.00
5155 8429 8.849543 TTACCTATGTTAACTGATCCTTACCT 57.150 34.615 7.22 0.00 0.00 3.08
5246 8600 8.696043 ATTTGCTATCACATATAAAGCTTCCA 57.304 30.769 0.00 0.00 34.28 3.53
5267 8621 7.205737 TCATACACCATGCTATTGCTATTTG 57.794 36.000 0.00 0.00 40.48 2.32
5268 8622 7.822161 TTCATACACCATGCTATTGCTATTT 57.178 32.000 0.00 0.00 40.48 1.40
5269 8623 7.449395 ACATTCATACACCATGCTATTGCTATT 59.551 33.333 0.00 0.00 40.48 1.73
5270 8624 6.944290 ACATTCATACACCATGCTATTGCTAT 59.056 34.615 0.00 0.00 40.48 2.97
5271 8625 6.298361 ACATTCATACACCATGCTATTGCTA 58.702 36.000 0.00 0.00 40.48 3.49
5272 8626 5.135383 ACATTCATACACCATGCTATTGCT 58.865 37.500 0.00 0.00 40.48 3.91
5273 8627 5.443185 ACATTCATACACCATGCTATTGC 57.557 39.130 0.00 0.00 40.20 3.56
5322 8676 9.435688 AAATTTGAAGTAATTAGCCCAAATCAC 57.564 29.630 14.22 0.00 34.38 3.06
5422 8779 0.984995 AGAACCTACAGGGAGGCAAC 59.015 55.000 0.00 0.00 40.65 4.17
5797 9155 6.212955 TGCAAACAAAAAGAACCTACATAGC 58.787 36.000 0.00 0.00 0.00 2.97
5828 9186 0.864455 GCAGACAGCTCACACTTGTC 59.136 55.000 0.00 0.00 41.10 3.18
6019 9377 5.068234 AGACACGTTAGCTAACAATGCTA 57.932 39.130 30.63 0.00 41.46 3.49
6020 9378 3.926616 AGACACGTTAGCTAACAATGCT 58.073 40.909 30.63 23.48 43.79 3.79
6021 9379 4.624024 TGTAGACACGTTAGCTAACAATGC 59.376 41.667 30.63 22.15 35.99 3.56
6022 9380 6.310467 ACATGTAGACACGTTAGCTAACAATG 59.690 38.462 30.63 27.83 35.99 2.82
6023 9381 6.395629 ACATGTAGACACGTTAGCTAACAAT 58.604 36.000 30.63 18.35 35.99 2.71
6024 9382 5.775686 ACATGTAGACACGTTAGCTAACAA 58.224 37.500 30.63 10.10 35.99 2.83
6025 9383 5.381174 ACATGTAGACACGTTAGCTAACA 57.619 39.130 30.63 14.03 35.99 2.41
6026 9384 5.860182 TGAACATGTAGACACGTTAGCTAAC 59.140 40.000 24.05 24.05 31.97 2.34
6187 9548 3.024547 GCACAGGTGATCAGTAGGTAGA 58.975 50.000 3.10 0.00 0.00 2.59
6188 9549 2.760650 TGCACAGGTGATCAGTAGGTAG 59.239 50.000 3.10 0.00 0.00 3.18
6189 9550 2.760650 CTGCACAGGTGATCAGTAGGTA 59.239 50.000 3.10 0.00 0.00 3.08
6190 9551 1.552337 CTGCACAGGTGATCAGTAGGT 59.448 52.381 3.10 0.00 0.00 3.08
6191 9552 1.134580 CCTGCACAGGTGATCAGTAGG 60.135 57.143 8.61 0.00 43.61 3.18
6192 9553 2.306341 CCTGCACAGGTGATCAGTAG 57.694 55.000 8.61 0.00 43.61 2.57
6242 9603 5.350365 GTCTGCCTGTATTATTCGTGTTTCA 59.650 40.000 0.00 0.00 0.00 2.69
6920 10281 2.360475 GGAGGTGTGCCCAAGCTC 60.360 66.667 0.00 2.02 40.63 4.09
6921 10282 3.971702 GGGAGGTGTGCCCAAGCT 61.972 66.667 0.00 0.00 45.31 3.74
6926 10287 4.619233 AAAAAGGGAGGTGTGCCC 57.381 55.556 0.00 0.00 46.40 5.36
6942 10303 5.288804 CCGCCATCTGAAAAAGAAGAAAAA 58.711 37.500 0.00 0.00 38.79 1.94
6943 10304 4.261994 CCCGCCATCTGAAAAAGAAGAAAA 60.262 41.667 0.00 0.00 38.79 2.29
6944 10305 3.255642 CCCGCCATCTGAAAAAGAAGAAA 59.744 43.478 0.00 0.00 38.79 2.52
6945 10306 2.819608 CCCGCCATCTGAAAAAGAAGAA 59.180 45.455 0.00 0.00 38.79 2.52
6968 10329 1.900498 GGCATGCCTATGGAGGTGC 60.900 63.158 29.98 0.00 45.78 5.01
7151 11937 9.920946 ATATGAACTGGGAGTACATATGTTTTT 57.079 29.630 14.77 0.00 34.35 1.94
7152 11938 9.920946 AATATGAACTGGGAGTACATATGTTTT 57.079 29.630 14.77 2.41 35.34 2.43
7153 11939 9.342308 CAATATGAACTGGGAGTACATATGTTT 57.658 33.333 14.77 2.80 35.34 2.83
7154 11940 8.713971 TCAATATGAACTGGGAGTACATATGTT 58.286 33.333 14.77 0.00 35.34 2.71
7155 11941 8.262601 TCAATATGAACTGGGAGTACATATGT 57.737 34.615 13.93 13.93 35.34 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.