Multiple sequence alignment - TraesCS1B01G200800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G200800 chr1B 100.000 6461 0 0 1 6461 359602126 359595666 0.000000e+00 11932.0
1 TraesCS1B01G200800 chr1B 98.955 5074 41 3 588 5660 400295117 400300179 0.000000e+00 9066.0
2 TraesCS1B01G200800 chr1B 98.455 5112 46 5 580 5662 641515787 641510680 0.000000e+00 8972.0
3 TraesCS1B01G200800 chr1B 98.551 138 2 0 6308 6445 197783596 197783459 1.800000e-60 244.0
4 TraesCS1B01G200800 chr1B 89.308 159 12 3 6308 6461 457086810 457086968 1.840000e-45 195.0
5 TraesCS1B01G200800 chr7B 98.939 5089 39 5 589 5667 312341953 312336870 0.000000e+00 9084.0
6 TraesCS1B01G200800 chr7B 99.501 802 4 0 5660 6461 353967083 353966282 0.000000e+00 1459.0
7 TraesCS1B01G200800 chr7B 99.323 591 2 1 1 589 353967668 353967078 0.000000e+00 1068.0
8 TraesCS1B01G200800 chr7B 97.122 139 3 1 6308 6445 499462423 499462285 3.900000e-57 233.0
9 TraesCS1B01G200800 chr7B 89.937 159 11 3 6308 6461 326170776 326170618 3.950000e-47 200.0
10 TraesCS1B01G200800 chr5A 98.863 5101 34 10 585 5663 506137836 506132738 0.000000e+00 9077.0
11 TraesCS1B01G200800 chr5A 98.607 5097 41 11 582 5659 593169440 593164355 0.000000e+00 8992.0
12 TraesCS1B01G200800 chr5A 93.500 200 4 1 5469 5659 593169434 593169235 8.200000e-74 289.0
13 TraesCS1B01G200800 chr1A 98.743 5091 44 2 589 5659 583541454 583536364 0.000000e+00 9029.0
14 TraesCS1B01G200800 chr2A 98.720 5078 56 4 589 5659 84594387 84589312 0.000000e+00 9009.0
15 TraesCS1B01G200800 chr2A 96.859 191 3 2 5469 5659 310415268 310415081 3.760000e-82 316.0
16 TraesCS1B01G200800 chr2A 94.258 209 3 1 589 797 84589509 84589310 1.750000e-80 311.0
17 TraesCS1B01G200800 chr3B 98.921 5006 41 3 663 5659 344281105 344276104 0.000000e+00 8933.0
18 TraesCS1B01G200800 chr3B 96.859 191 2 1 5469 5659 344281159 344280973 3.760000e-82 316.0
19 TraesCS1B01G200800 chr3B 93.780 209 2 2 589 795 344276303 344276104 2.930000e-78 303.0
20 TraesCS1B01G200800 chr3B 87.059 85 10 1 129 212 441252632 441252548 1.920000e-15 95.3
21 TraesCS1B01G200800 chr4A 98.919 4995 51 2 667 5659 650868215 650863222 0.000000e+00 8922.0
22 TraesCS1B01G200800 chr6B 97.727 616 14 0 5660 6275 252386525 252387140 0.000000e+00 1061.0
23 TraesCS1B01G200800 chr6B 98.308 591 8 1 1 589 252385940 252386530 0.000000e+00 1035.0
24 TraesCS1B01G200800 chr6B 92.892 619 36 3 5660 6275 474645511 474644898 0.000000e+00 893.0
25 TraesCS1B01G200800 chr6B 94.764 573 27 2 19 589 474646077 474645506 0.000000e+00 889.0
26 TraesCS1B01G200800 chr6B 90.551 381 32 4 20 399 173829672 173830049 9.670000e-138 501.0
27 TraesCS1B01G200800 chr6B 91.456 316 23 2 5674 5985 173830126 173830441 1.290000e-116 431.0
28 TraesCS1B01G200800 chr6B 89.308 159 12 3 6308 6461 612444318 612444476 1.840000e-45 195.0
29 TraesCS1B01G200800 chr2B 98.477 591 7 1 1 589 371933401 371932811 0.000000e+00 1040.0
30 TraesCS1B01G200800 chr2B 97.078 616 18 0 5660 6275 296477656 296477041 0.000000e+00 1038.0
31 TraesCS1B01G200800 chr2B 97.078 616 17 1 5660 6275 371932816 371932202 0.000000e+00 1037.0
32 TraesCS1B01G200800 chr2B 96.335 573 19 1 19 589 296478223 296477651 0.000000e+00 941.0
33 TraesCS1B01G200800 chr2B 91.922 619 42 3 5660 6275 459422431 459423044 0.000000e+00 859.0
34 TraesCS1B01G200800 chr2B 93.092 579 30 5 19 589 459421860 459422436 0.000000e+00 839.0
35 TraesCS1B01G200800 chr2B 98.701 154 2 0 6308 6461 302979639 302979486 2.300000e-69 274.0
36 TraesCS1B01G200800 chr2B 98.710 155 1 1 6308 6461 587814209 587814055 2.300000e-69 274.0
37 TraesCS1B01G200800 chr3A 91.532 555 33 1 19 559 455622606 455623160 0.000000e+00 752.0
38 TraesCS1B01G200800 chr3A 94.898 196 5 1 5469 5659 648036386 648036191 1.050000e-77 302.0
39 TraesCS1B01G200800 chr3A 89.583 192 16 2 5660 5848 455642114 455642304 2.330000e-59 241.0
40 TraesCS1B01G200800 chr5B 93.367 196 8 2 5469 5659 311844452 311844647 1.060000e-72 285.0
41 TraesCS1B01G200800 chr5B 98.710 155 1 1 6308 6461 251570424 251570578 2.300000e-69 274.0
42 TraesCS1B01G200800 chr3D 83.658 257 37 4 6024 6277 108826366 108826112 3.010000e-58 237.0
43 TraesCS1B01G200800 chrUn 89.730 185 15 4 5497 5678 2744972 2745155 3.900000e-57 233.0
44 TraesCS1B01G200800 chrUn 89.730 185 15 4 5497 5678 333448441 333448258 3.900000e-57 233.0
45 TraesCS1B01G200800 chr5D 85.987 157 21 1 6118 6274 529568889 529568734 4.010000e-37 167.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G200800 chr1B 359595666 359602126 6460 True 11932.0 11932 100.0000 1 6461 1 chr1B.!!$R2 6460
1 TraesCS1B01G200800 chr1B 400295117 400300179 5062 False 9066.0 9066 98.9550 588 5660 1 chr1B.!!$F1 5072
2 TraesCS1B01G200800 chr1B 641510680 641515787 5107 True 8972.0 8972 98.4550 580 5662 1 chr1B.!!$R3 5082
3 TraesCS1B01G200800 chr7B 312336870 312341953 5083 True 9084.0 9084 98.9390 589 5667 1 chr7B.!!$R1 5078
4 TraesCS1B01G200800 chr7B 353966282 353967668 1386 True 1263.5 1459 99.4120 1 6461 2 chr7B.!!$R4 6460
5 TraesCS1B01G200800 chr5A 506132738 506137836 5098 True 9077.0 9077 98.8630 585 5663 1 chr5A.!!$R1 5078
6 TraesCS1B01G200800 chr5A 593164355 593169440 5085 True 4640.5 8992 96.0535 582 5659 2 chr5A.!!$R2 5077
7 TraesCS1B01G200800 chr1A 583536364 583541454 5090 True 9029.0 9029 98.7430 589 5659 1 chr1A.!!$R1 5070
8 TraesCS1B01G200800 chr2A 84589310 84594387 5077 True 4660.0 9009 96.4890 589 5659 2 chr2A.!!$R2 5070
9 TraesCS1B01G200800 chr3B 344276104 344281105 5001 True 8933.0 8933 98.9210 663 5659 1 chr3B.!!$R1 4996
10 TraesCS1B01G200800 chr4A 650863222 650868215 4993 True 8922.0 8922 98.9190 667 5659 1 chr4A.!!$R1 4992
11 TraesCS1B01G200800 chr6B 252385940 252387140 1200 False 1048.0 1061 98.0175 1 6275 2 chr6B.!!$F3 6274
12 TraesCS1B01G200800 chr6B 474644898 474646077 1179 True 891.0 893 93.8280 19 6275 2 chr6B.!!$R1 6256
13 TraesCS1B01G200800 chr6B 173829672 173830441 769 False 466.0 501 91.0035 20 5985 2 chr6B.!!$F2 5965
14 TraesCS1B01G200800 chr2B 371932202 371933401 1199 True 1038.5 1040 97.7775 1 6275 2 chr2B.!!$R4 6274
15 TraesCS1B01G200800 chr2B 296477041 296478223 1182 True 989.5 1038 96.7065 19 6275 2 chr2B.!!$R3 6256
16 TraesCS1B01G200800 chr2B 459421860 459423044 1184 False 849.0 859 92.5070 19 6275 2 chr2B.!!$F1 6256
17 TraesCS1B01G200800 chr3A 455622606 455623160 554 False 752.0 752 91.5320 19 559 1 chr3A.!!$F1 540

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
247 249 0.036671 TGCTGAGGCATCACTGAGTG 60.037 55.000 6.18 6.18 44.28 3.51 F
529 531 0.110486 GCAACCAAGAACCTCCTGGA 59.890 55.000 0.00 0.00 37.04 3.86 F
1101 1112 1.148273 AGGTGCGCTTGTTCCTCAA 59.852 52.632 9.73 0.00 34.61 3.02 F
1850 1861 2.745102 CATCAATTGCACAGCACAACA 58.255 42.857 0.00 0.00 38.71 3.33 F
2447 2458 2.067932 CTTGGGACAGGAACCAGGCA 62.068 60.000 0.00 0.00 42.39 4.75 F
3369 3579 5.676079 GCGCACATTTGTAAGTATGGATGTT 60.676 40.000 0.30 0.00 0.00 2.71 F
3508 3718 2.203523 AGTGCAGCACCAATGGCA 60.204 55.556 22.41 0.00 34.49 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1732 1743 1.092345 GCATTCGCTTCTCCAGTCCC 61.092 60.000 0.00 0.00 34.30 4.46 R
1850 1861 2.764572 CCCCTACCACGTATTTCTCTGT 59.235 50.000 0.00 0.00 0.00 3.41 R
2162 2173 3.042682 TCAAACTCAGTTGAGGTACCCA 58.957 45.455 8.74 3.39 42.17 4.51 R
3473 3683 0.947244 CTCACCACTCAAGTTGCACC 59.053 55.000 0.00 0.00 0.00 5.01 R
3508 3718 1.075374 TGGTATTGGCTGCTCCTTGTT 59.925 47.619 0.00 0.00 35.26 2.83 R
5041 5494 3.068024 CCACCAACAAACACACAATAGCT 59.932 43.478 0.00 0.00 0.00 3.32 R
5683 6317 4.852134 TGCAATGCATGTGAGTTAAGTT 57.148 36.364 2.72 0.00 31.71 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
246 248 2.369654 TGCTGAGGCATCACTGAGT 58.630 52.632 0.00 0.00 44.28 3.41
247 249 0.036671 TGCTGAGGCATCACTGAGTG 60.037 55.000 6.18 6.18 44.28 3.51
248 250 0.743701 GCTGAGGCATCACTGAGTGG 60.744 60.000 13.33 0.00 38.54 4.00
249 251 0.743701 CTGAGGCATCACTGAGTGGC 60.744 60.000 13.33 8.98 40.82 5.01
250 252 1.812922 GAGGCATCACTGAGTGGCG 60.813 63.158 13.33 5.31 44.68 5.69
251 253 2.230994 GAGGCATCACTGAGTGGCGA 62.231 60.000 13.33 0.00 44.68 5.54
252 254 1.153289 GGCATCACTGAGTGGCGAT 60.153 57.895 13.33 0.00 33.87 4.58
253 255 1.434622 GGCATCACTGAGTGGCGATG 61.435 60.000 13.33 10.26 38.61 3.84
254 256 2.012237 CATCACTGAGTGGCGATGC 58.988 57.895 13.33 0.00 33.87 3.91
271 273 4.218578 CCATCGCGGCAGAGCTCT 62.219 66.667 11.45 11.45 34.40 4.09
272 274 2.202851 CATCGCGGCAGAGCTCTT 60.203 61.111 15.27 0.00 34.40 2.85
273 275 2.202851 ATCGCGGCAGAGCTCTTG 60.203 61.111 15.27 11.01 34.40 3.02
274 276 3.729965 ATCGCGGCAGAGCTCTTGG 62.730 63.158 15.27 4.92 34.40 3.61
275 277 4.441695 CGCGGCAGAGCTCTTGGA 62.442 66.667 15.27 0.00 34.40 3.53
276 278 2.817396 GCGGCAGAGCTCTTGGAC 60.817 66.667 15.27 4.97 0.00 4.02
277 279 2.659016 CGGCAGAGCTCTTGGACA 59.341 61.111 15.27 0.00 0.00 4.02
278 280 1.004560 CGGCAGAGCTCTTGGACAA 60.005 57.895 15.27 0.00 0.00 3.18
279 281 1.018226 CGGCAGAGCTCTTGGACAAG 61.018 60.000 15.27 5.72 39.71 3.16
280 282 0.322975 GGCAGAGCTCTTGGACAAGA 59.677 55.000 15.27 13.56 44.47 3.02
281 283 1.437625 GCAGAGCTCTTGGACAAGAC 58.562 55.000 15.27 8.19 42.06 3.01
282 284 1.270518 GCAGAGCTCTTGGACAAGACA 60.271 52.381 15.27 0.00 42.06 3.41
283 285 2.808202 GCAGAGCTCTTGGACAAGACAA 60.808 50.000 15.27 0.00 42.06 3.18
284 286 2.805099 CAGAGCTCTTGGACAAGACAAC 59.195 50.000 15.27 4.24 42.06 3.32
285 287 2.147150 GAGCTCTTGGACAAGACAACC 58.853 52.381 10.52 1.14 42.06 3.77
286 288 1.202818 AGCTCTTGGACAAGACAACCC 60.203 52.381 10.52 0.00 42.06 4.11
287 289 1.202818 GCTCTTGGACAAGACAACCCT 60.203 52.381 10.52 0.00 42.06 4.34
288 290 2.772287 CTCTTGGACAAGACAACCCTC 58.228 52.381 10.52 0.00 42.06 4.30
289 291 1.070134 TCTTGGACAAGACAACCCTCG 59.930 52.381 10.52 0.00 42.06 4.63
290 292 0.834612 TTGGACAAGACAACCCTCGT 59.165 50.000 0.00 0.00 0.00 4.18
291 293 0.834612 TGGACAAGACAACCCTCGTT 59.165 50.000 0.00 0.00 0.00 3.85
292 294 2.040939 TGGACAAGACAACCCTCGTTA 58.959 47.619 0.00 0.00 0.00 3.18
293 295 2.036733 TGGACAAGACAACCCTCGTTAG 59.963 50.000 0.00 0.00 0.00 2.34
294 296 2.036862 GGACAAGACAACCCTCGTTAGT 59.963 50.000 0.00 0.00 0.00 2.24
295 297 3.493873 GGACAAGACAACCCTCGTTAGTT 60.494 47.826 0.00 0.00 0.00 2.24
296 298 3.725490 ACAAGACAACCCTCGTTAGTTC 58.275 45.455 0.00 0.00 0.00 3.01
297 299 3.387050 ACAAGACAACCCTCGTTAGTTCT 59.613 43.478 0.00 0.00 0.00 3.01
298 300 4.141779 ACAAGACAACCCTCGTTAGTTCTT 60.142 41.667 0.00 0.00 0.00 2.52
299 301 5.069516 ACAAGACAACCCTCGTTAGTTCTTA 59.930 40.000 0.00 0.00 0.00 2.10
300 302 5.131594 AGACAACCCTCGTTAGTTCTTAC 57.868 43.478 0.00 0.00 0.00 2.34
301 303 4.021632 AGACAACCCTCGTTAGTTCTTACC 60.022 45.833 0.00 0.00 0.00 2.85
302 304 3.642848 ACAACCCTCGTTAGTTCTTACCA 59.357 43.478 0.00 0.00 0.00 3.25
303 305 4.285260 ACAACCCTCGTTAGTTCTTACCAT 59.715 41.667 0.00 0.00 0.00 3.55
304 306 5.221783 ACAACCCTCGTTAGTTCTTACCATT 60.222 40.000 0.00 0.00 0.00 3.16
305 307 5.082251 ACCCTCGTTAGTTCTTACCATTC 57.918 43.478 0.00 0.00 0.00 2.67
306 308 4.776308 ACCCTCGTTAGTTCTTACCATTCT 59.224 41.667 0.00 0.00 0.00 2.40
307 309 5.247792 ACCCTCGTTAGTTCTTACCATTCTT 59.752 40.000 0.00 0.00 0.00 2.52
308 310 5.811100 CCCTCGTTAGTTCTTACCATTCTTC 59.189 44.000 0.00 0.00 0.00 2.87
309 311 6.351117 CCCTCGTTAGTTCTTACCATTCTTCT 60.351 42.308 0.00 0.00 0.00 2.85
310 312 7.097834 CCTCGTTAGTTCTTACCATTCTTCTT 58.902 38.462 0.00 0.00 0.00 2.52
311 313 7.603024 CCTCGTTAGTTCTTACCATTCTTCTTT 59.397 37.037 0.00 0.00 0.00 2.52
312 314 9.635520 CTCGTTAGTTCTTACCATTCTTCTTTA 57.364 33.333 0.00 0.00 0.00 1.85
313 315 9.985730 TCGTTAGTTCTTACCATTCTTCTTTAA 57.014 29.630 0.00 0.00 0.00 1.52
319 321 9.894783 GTTCTTACCATTCTTCTTTAAAGAACC 57.105 33.333 23.65 0.00 42.60 3.62
320 322 9.635404 TTCTTACCATTCTTCTTTAAAGAACCA 57.365 29.630 23.65 14.58 39.95 3.67
321 323 9.635404 TCTTACCATTCTTCTTTAAAGAACCAA 57.365 29.630 23.65 18.90 39.95 3.67
322 324 9.899226 CTTACCATTCTTCTTTAAAGAACCAAG 57.101 33.333 23.65 15.41 39.95 3.61
323 325 7.898014 ACCATTCTTCTTTAAAGAACCAAGT 57.102 32.000 23.65 15.15 39.95 3.16
324 326 8.990163 ACCATTCTTCTTTAAAGAACCAAGTA 57.010 30.769 23.65 10.57 39.95 2.24
325 327 9.588096 ACCATTCTTCTTTAAAGAACCAAGTAT 57.412 29.630 23.65 12.15 39.95 2.12
338 340 8.859236 AAGAACCAAGTATATCATCATGATGG 57.141 34.615 30.54 17.99 37.70 3.51
339 341 6.883217 AGAACCAAGTATATCATCATGATGGC 59.117 38.462 30.54 17.31 37.70 4.40
340 342 5.503927 ACCAAGTATATCATCATGATGGCC 58.496 41.667 30.54 16.06 37.70 5.36
341 343 4.885907 CCAAGTATATCATCATGATGGCCC 59.114 45.833 30.54 16.36 37.70 5.80
342 344 4.412796 AGTATATCATCATGATGGCCCG 57.587 45.455 30.54 9.47 37.70 6.13
343 345 3.776969 AGTATATCATCATGATGGCCCGT 59.223 43.478 30.54 16.79 37.70 5.28
344 346 2.477845 TATCATCATGATGGCCCGTG 57.522 50.000 30.54 9.62 37.70 4.94
345 347 0.766752 ATCATCATGATGGCCCGTGA 59.233 50.000 30.54 14.55 35.43 4.35
346 348 0.545646 TCATCATGATGGCCCGTGAA 59.454 50.000 30.54 10.16 39.24 3.18
347 349 0.664761 CATCATGATGGCCCGTGAAC 59.335 55.000 25.37 0.00 35.89 3.18
348 350 0.466189 ATCATGATGGCCCGTGAACC 60.466 55.000 7.59 0.00 35.89 3.62
349 351 2.120909 CATGATGGCCCGTGAACCC 61.121 63.158 0.00 0.00 0.00 4.11
350 352 3.358932 ATGATGGCCCGTGAACCCC 62.359 63.158 0.00 0.00 0.00 4.95
351 353 3.728373 GATGGCCCGTGAACCCCT 61.728 66.667 0.00 0.00 0.00 4.79
352 354 3.995506 GATGGCCCGTGAACCCCTG 62.996 68.421 0.00 0.00 0.00 4.45
354 356 3.324108 GGCCCGTGAACCCCTGTA 61.324 66.667 0.00 0.00 0.00 2.74
355 357 2.751688 GCCCGTGAACCCCTGTAA 59.248 61.111 0.00 0.00 0.00 2.41
356 358 1.073548 GCCCGTGAACCCCTGTAAA 59.926 57.895 0.00 0.00 0.00 2.01
357 359 0.537828 GCCCGTGAACCCCTGTAAAA 60.538 55.000 0.00 0.00 0.00 1.52
358 360 1.241165 CCCGTGAACCCCTGTAAAAC 58.759 55.000 0.00 0.00 0.00 2.43
359 361 1.477195 CCCGTGAACCCCTGTAAAACA 60.477 52.381 0.00 0.00 0.00 2.83
360 362 1.605232 CCGTGAACCCCTGTAAAACAC 59.395 52.381 0.00 0.00 0.00 3.32
361 363 2.290464 CGTGAACCCCTGTAAAACACA 58.710 47.619 0.00 0.00 35.30 3.72
362 364 2.683867 CGTGAACCCCTGTAAAACACAA 59.316 45.455 0.00 0.00 36.48 3.33
363 365 3.316868 CGTGAACCCCTGTAAAACACAAT 59.683 43.478 0.00 0.00 36.48 2.71
364 366 4.616953 GTGAACCCCTGTAAAACACAATG 58.383 43.478 0.00 0.00 36.48 2.82
365 367 4.339814 GTGAACCCCTGTAAAACACAATGA 59.660 41.667 0.00 0.00 36.48 2.57
366 368 5.010617 GTGAACCCCTGTAAAACACAATGAT 59.989 40.000 0.00 0.00 36.48 2.45
367 369 6.207810 GTGAACCCCTGTAAAACACAATGATA 59.792 38.462 0.00 0.00 36.48 2.15
368 370 6.432783 TGAACCCCTGTAAAACACAATGATAG 59.567 38.462 0.00 0.00 36.48 2.08
369 371 4.705023 ACCCCTGTAAAACACAATGATAGC 59.295 41.667 0.00 0.00 36.48 2.97
370 372 4.704540 CCCCTGTAAAACACAATGATAGCA 59.295 41.667 0.00 0.00 36.48 3.49
371 373 5.163622 CCCCTGTAAAACACAATGATAGCAG 60.164 44.000 0.00 0.00 36.48 4.24
372 374 5.415701 CCCTGTAAAACACAATGATAGCAGT 59.584 40.000 0.00 0.00 36.48 4.40
373 375 6.071952 CCCTGTAAAACACAATGATAGCAGTT 60.072 38.462 0.00 0.00 36.48 3.16
374 376 7.120579 CCCTGTAAAACACAATGATAGCAGTTA 59.879 37.037 0.00 0.00 36.48 2.24
375 377 8.511321 CCTGTAAAACACAATGATAGCAGTTAA 58.489 33.333 0.00 0.00 36.48 2.01
377 379 9.838975 TGTAAAACACAATGATAGCAGTTAATG 57.161 29.630 0.00 0.00 32.95 1.90
378 380 9.289303 GTAAAACACAATGATAGCAGTTAATGG 57.711 33.333 0.00 0.00 0.00 3.16
379 381 5.505173 ACACAATGATAGCAGTTAATGGC 57.495 39.130 0.00 0.00 0.00 4.40
380 382 4.949238 ACACAATGATAGCAGTTAATGGCA 59.051 37.500 0.00 0.00 0.00 4.92
381 383 5.595542 ACACAATGATAGCAGTTAATGGCAT 59.404 36.000 0.00 0.00 0.00 4.40
382 384 6.772233 ACACAATGATAGCAGTTAATGGCATA 59.228 34.615 0.00 0.00 0.00 3.14
383 385 7.080099 CACAATGATAGCAGTTAATGGCATAC 58.920 38.462 0.00 0.00 0.00 2.39
384 386 6.772233 ACAATGATAGCAGTTAATGGCATACA 59.228 34.615 0.00 0.00 0.00 2.29
385 387 7.449395 ACAATGATAGCAGTTAATGGCATACAT 59.551 33.333 0.00 0.00 43.07 2.29
386 388 8.949177 CAATGATAGCAGTTAATGGCATACATA 58.051 33.333 0.00 0.00 39.40 2.29
387 389 9.690913 AATGATAGCAGTTAATGGCATACATAT 57.309 29.630 0.00 0.00 39.40 1.78
426 428 9.730705 ACATATATACTATGAATGCAGCAAACT 57.269 29.630 0.00 0.00 0.00 2.66
444 446 5.747565 CAAACTTTGCTCATCTACGAAACA 58.252 37.500 0.00 0.00 0.00 2.83
445 447 5.597813 AACTTTGCTCATCTACGAAACAG 57.402 39.130 0.00 0.00 0.00 3.16
446 448 4.883083 ACTTTGCTCATCTACGAAACAGA 58.117 39.130 0.00 0.00 0.00 3.41
447 449 5.297547 ACTTTGCTCATCTACGAAACAGAA 58.702 37.500 0.00 0.00 0.00 3.02
448 450 5.934625 ACTTTGCTCATCTACGAAACAGAAT 59.065 36.000 0.00 0.00 0.00 2.40
449 451 7.097192 ACTTTGCTCATCTACGAAACAGAATA 58.903 34.615 0.00 0.00 0.00 1.75
450 452 7.766278 ACTTTGCTCATCTACGAAACAGAATAT 59.234 33.333 0.00 0.00 0.00 1.28
451 453 9.249457 CTTTGCTCATCTACGAAACAGAATATA 57.751 33.333 0.00 0.00 0.00 0.86
452 454 8.575565 TTGCTCATCTACGAAACAGAATATAC 57.424 34.615 0.00 0.00 0.00 1.47
453 455 7.941919 TGCTCATCTACGAAACAGAATATACT 58.058 34.615 0.00 0.00 0.00 2.12
454 456 8.414003 TGCTCATCTACGAAACAGAATATACTT 58.586 33.333 0.00 0.00 0.00 2.24
455 457 8.907685 GCTCATCTACGAAACAGAATATACTTC 58.092 37.037 0.00 0.00 0.00 3.01
456 458 9.952188 CTCATCTACGAAACAGAATATACTTCA 57.048 33.333 0.00 0.00 0.00 3.02
459 461 9.613957 ATCTACGAAACAGAATATACTTCATCG 57.386 33.333 0.00 0.00 0.00 3.84
460 462 8.618677 TCTACGAAACAGAATATACTTCATCGT 58.381 33.333 0.00 0.00 41.85 3.73
461 463 9.234384 CTACGAAACAGAATATACTTCATCGTT 57.766 33.333 0.00 0.00 39.97 3.85
462 464 8.475331 ACGAAACAGAATATACTTCATCGTTT 57.525 30.769 0.00 0.00 36.52 3.60
463 465 9.577110 ACGAAACAGAATATACTTCATCGTTTA 57.423 29.630 0.00 0.00 36.52 2.01
474 476 8.773404 ATACTTCATCGTTTATATGGGTTAGC 57.227 34.615 0.00 0.00 0.00 3.09
475 477 6.588204 ACTTCATCGTTTATATGGGTTAGCA 58.412 36.000 0.00 0.00 0.00 3.49
476 478 7.224297 ACTTCATCGTTTATATGGGTTAGCAT 58.776 34.615 0.00 0.00 0.00 3.79
477 479 8.372459 ACTTCATCGTTTATATGGGTTAGCATA 58.628 33.333 0.00 0.00 0.00 3.14
478 480 9.383519 CTTCATCGTTTATATGGGTTAGCATAT 57.616 33.333 0.00 0.00 0.00 1.78
479 481 9.733556 TTCATCGTTTATATGGGTTAGCATATT 57.266 29.630 0.00 0.00 0.00 1.28
490 492 7.547697 TGGGTTAGCATATTATAGTACTGCA 57.452 36.000 5.39 0.00 35.32 4.41
491 493 7.383687 TGGGTTAGCATATTATAGTACTGCAC 58.616 38.462 5.39 0.00 35.32 4.57
492 494 7.015779 TGGGTTAGCATATTATAGTACTGCACA 59.984 37.037 5.39 0.00 35.32 4.57
493 495 8.041323 GGGTTAGCATATTATAGTACTGCACAT 58.959 37.037 5.39 0.00 35.32 3.21
494 496 8.873830 GGTTAGCATATTATAGTACTGCACATG 58.126 37.037 5.39 4.07 35.32 3.21
495 497 9.424319 GTTAGCATATTATAGTACTGCACATGT 57.576 33.333 5.39 0.00 35.32 3.21
498 500 7.761704 AGCATATTATAGTACTGCACATGTAGC 59.238 37.037 5.39 5.65 35.32 3.58
499 501 7.545615 GCATATTATAGTACTGCACATGTAGCA 59.454 37.037 17.93 17.93 40.19 3.49
500 502 9.423061 CATATTATAGTACTGCACATGTAGCAA 57.577 33.333 18.99 8.48 42.17 3.91
501 503 9.996554 ATATTATAGTACTGCACATGTAGCAAA 57.003 29.630 18.99 11.59 42.17 3.68
502 504 8.731275 ATTATAGTACTGCACATGTAGCAAAA 57.269 30.769 18.99 10.45 42.17 2.44
503 505 8.554835 TTATAGTACTGCACATGTAGCAAAAA 57.445 30.769 18.99 8.62 42.17 1.94
504 506 5.964958 AGTACTGCACATGTAGCAAAAAT 57.035 34.783 18.99 9.90 42.17 1.82
505 507 8.731275 ATAGTACTGCACATGTAGCAAAAATA 57.269 30.769 18.99 14.42 42.17 1.40
506 508 6.842163 AGTACTGCACATGTAGCAAAAATAC 58.158 36.000 18.99 17.14 42.17 1.89
507 509 5.059404 ACTGCACATGTAGCAAAAATACC 57.941 39.130 18.99 0.00 42.17 2.73
508 510 4.522405 ACTGCACATGTAGCAAAAATACCA 59.478 37.500 18.99 0.08 42.17 3.25
509 511 5.010516 ACTGCACATGTAGCAAAAATACCAA 59.989 36.000 18.99 0.00 42.17 3.67
510 512 5.468592 TGCACATGTAGCAAAAATACCAAG 58.531 37.500 17.06 0.00 39.39 3.61
511 513 4.327087 GCACATGTAGCAAAAATACCAAGC 59.673 41.667 13.27 0.00 0.00 4.01
512 514 5.468592 CACATGTAGCAAAAATACCAAGCA 58.531 37.500 0.00 0.00 0.00 3.91
513 515 5.925397 CACATGTAGCAAAAATACCAAGCAA 59.075 36.000 0.00 0.00 0.00 3.91
514 516 5.925969 ACATGTAGCAAAAATACCAAGCAAC 59.074 36.000 0.00 0.00 0.00 4.17
515 517 4.877282 TGTAGCAAAAATACCAAGCAACC 58.123 39.130 0.00 0.00 0.00 3.77
516 518 4.342378 TGTAGCAAAAATACCAAGCAACCA 59.658 37.500 0.00 0.00 0.00 3.67
517 519 4.414337 AGCAAAAATACCAAGCAACCAA 57.586 36.364 0.00 0.00 0.00 3.67
518 520 4.379652 AGCAAAAATACCAAGCAACCAAG 58.620 39.130 0.00 0.00 0.00 3.61
519 521 4.100808 AGCAAAAATACCAAGCAACCAAGA 59.899 37.500 0.00 0.00 0.00 3.02
520 522 4.813697 GCAAAAATACCAAGCAACCAAGAA 59.186 37.500 0.00 0.00 0.00 2.52
521 523 5.277297 GCAAAAATACCAAGCAACCAAGAAC 60.277 40.000 0.00 0.00 0.00 3.01
522 524 4.600692 AAATACCAAGCAACCAAGAACC 57.399 40.909 0.00 0.00 0.00 3.62
523 525 3.525800 ATACCAAGCAACCAAGAACCT 57.474 42.857 0.00 0.00 0.00 3.50
524 526 1.692411 ACCAAGCAACCAAGAACCTC 58.308 50.000 0.00 0.00 0.00 3.85
525 527 0.961753 CCAAGCAACCAAGAACCTCC 59.038 55.000 0.00 0.00 0.00 4.30
526 528 1.479389 CCAAGCAACCAAGAACCTCCT 60.479 52.381 0.00 0.00 0.00 3.69
527 529 1.610522 CAAGCAACCAAGAACCTCCTG 59.389 52.381 0.00 0.00 0.00 3.86
528 530 0.111253 AGCAACCAAGAACCTCCTGG 59.889 55.000 0.00 0.00 39.83 4.45
529 531 0.110486 GCAACCAAGAACCTCCTGGA 59.890 55.000 0.00 0.00 37.04 3.86
530 532 1.272147 GCAACCAAGAACCTCCTGGAT 60.272 52.381 0.00 0.00 37.04 3.41
531 533 2.716217 CAACCAAGAACCTCCTGGATC 58.284 52.381 0.00 0.00 35.62 3.36
532 534 2.040278 CAACCAAGAACCTCCTGGATCA 59.960 50.000 0.00 0.00 37.58 2.92
533 535 2.348472 ACCAAGAACCTCCTGGATCAA 58.652 47.619 0.00 0.00 37.58 2.57
534 536 2.040412 ACCAAGAACCTCCTGGATCAAC 59.960 50.000 0.00 0.00 37.58 3.18
535 537 2.040278 CCAAGAACCTCCTGGATCAACA 59.960 50.000 0.00 0.00 37.58 3.33
536 538 3.498481 CCAAGAACCTCCTGGATCAACAA 60.498 47.826 0.00 0.00 37.58 2.83
537 539 3.425162 AGAACCTCCTGGATCAACAAC 57.575 47.619 0.00 0.00 37.58 3.32
538 540 2.711009 AGAACCTCCTGGATCAACAACA 59.289 45.455 0.00 0.00 37.58 3.33
539 541 3.138283 AGAACCTCCTGGATCAACAACAA 59.862 43.478 0.00 0.00 37.58 2.83
540 542 3.593442 ACCTCCTGGATCAACAACAAA 57.407 42.857 0.00 0.00 37.04 2.83
541 543 3.909732 ACCTCCTGGATCAACAACAAAA 58.090 40.909 0.00 0.00 37.04 2.44
542 544 4.285863 ACCTCCTGGATCAACAACAAAAA 58.714 39.130 0.00 0.00 37.04 1.94
543 545 4.099419 ACCTCCTGGATCAACAACAAAAAC 59.901 41.667 0.00 0.00 37.04 2.43
544 546 4.099266 CCTCCTGGATCAACAACAAAAACA 59.901 41.667 0.00 0.00 34.57 2.83
545 547 5.395103 CCTCCTGGATCAACAACAAAAACAA 60.395 40.000 0.00 0.00 34.57 2.83
546 548 5.415221 TCCTGGATCAACAACAAAAACAAC 58.585 37.500 0.00 0.00 0.00 3.32
547 549 4.570369 CCTGGATCAACAACAAAAACAACC 59.430 41.667 0.00 0.00 0.00 3.77
548 550 5.152623 TGGATCAACAACAAAAACAACCA 57.847 34.783 0.00 0.00 0.00 3.67
549 551 5.551233 TGGATCAACAACAAAAACAACCAA 58.449 33.333 0.00 0.00 0.00 3.67
550 552 5.641209 TGGATCAACAACAAAAACAACCAAG 59.359 36.000 0.00 0.00 0.00 3.61
551 553 5.872070 GGATCAACAACAAAAACAACCAAGA 59.128 36.000 0.00 0.00 0.00 3.02
552 554 6.538381 GGATCAACAACAAAAACAACCAAGAT 59.462 34.615 0.00 0.00 0.00 2.40
553 555 6.718454 TCAACAACAAAAACAACCAAGATG 57.282 33.333 0.00 0.00 0.00 2.90
554 556 5.121454 TCAACAACAAAAACAACCAAGATGC 59.879 36.000 0.00 0.00 0.00 3.91
555 557 4.573900 ACAACAAAAACAACCAAGATGCA 58.426 34.783 0.00 0.00 0.00 3.96
556 558 4.391523 ACAACAAAAACAACCAAGATGCAC 59.608 37.500 0.00 0.00 0.00 4.57
557 559 4.470334 ACAAAAACAACCAAGATGCACT 57.530 36.364 0.00 0.00 0.00 4.40
558 560 4.183101 ACAAAAACAACCAAGATGCACTG 58.817 39.130 0.00 0.00 0.00 3.66
559 561 4.081752 ACAAAAACAACCAAGATGCACTGA 60.082 37.500 0.00 0.00 0.00 3.41
560 562 3.715628 AAACAACCAAGATGCACTGAC 57.284 42.857 0.00 0.00 0.00 3.51
561 563 2.645838 ACAACCAAGATGCACTGACT 57.354 45.000 0.00 0.00 0.00 3.41
562 564 2.936202 ACAACCAAGATGCACTGACTT 58.064 42.857 0.00 0.00 0.00 3.01
563 565 3.290710 ACAACCAAGATGCACTGACTTT 58.709 40.909 0.00 0.00 0.00 2.66
564 566 3.701040 ACAACCAAGATGCACTGACTTTT 59.299 39.130 0.00 0.00 0.00 2.27
565 567 4.202050 ACAACCAAGATGCACTGACTTTTC 60.202 41.667 0.00 0.00 0.00 2.29
566 568 3.554934 ACCAAGATGCACTGACTTTTCA 58.445 40.909 0.00 0.00 0.00 2.69
567 569 3.953612 ACCAAGATGCACTGACTTTTCAA 59.046 39.130 0.00 0.00 0.00 2.69
568 570 4.586001 ACCAAGATGCACTGACTTTTCAAT 59.414 37.500 0.00 0.00 0.00 2.57
569 571 5.769662 ACCAAGATGCACTGACTTTTCAATA 59.230 36.000 0.00 0.00 0.00 1.90
570 572 6.088824 CCAAGATGCACTGACTTTTCAATAC 58.911 40.000 0.00 0.00 0.00 1.89
571 573 6.294120 CCAAGATGCACTGACTTTTCAATACA 60.294 38.462 0.00 0.00 0.00 2.29
572 574 6.882610 AGATGCACTGACTTTTCAATACAA 57.117 33.333 0.00 0.00 0.00 2.41
573 575 7.275888 AGATGCACTGACTTTTCAATACAAA 57.724 32.000 0.00 0.00 0.00 2.83
574 576 7.889469 AGATGCACTGACTTTTCAATACAAAT 58.111 30.769 0.00 0.00 0.00 2.32
575 577 7.811236 AGATGCACTGACTTTTCAATACAAATG 59.189 33.333 0.00 0.00 0.00 2.32
576 578 7.036996 TGCACTGACTTTTCAATACAAATGA 57.963 32.000 0.00 0.00 0.00 2.57
577 579 6.917477 TGCACTGACTTTTCAATACAAATGAC 59.083 34.615 0.00 0.00 0.00 3.06
578 580 7.141363 GCACTGACTTTTCAATACAAATGACT 58.859 34.615 0.00 0.00 0.00 3.41
579 581 8.289618 GCACTGACTTTTCAATACAAATGACTA 58.710 33.333 0.00 0.00 0.00 2.59
1101 1112 1.148273 AGGTGCGCTTGTTCCTCAA 59.852 52.632 9.73 0.00 34.61 3.02
1850 1861 2.745102 CATCAATTGCACAGCACAACA 58.255 42.857 0.00 0.00 38.71 3.33
2281 2292 5.705441 GGAGTTGGATCAGTTCAATGTACAA 59.295 40.000 0.00 0.00 0.00 2.41
2324 2335 7.392953 TGATGTATTACATGTTCCAGCTTTTCA 59.607 33.333 13.93 0.00 39.27 2.69
2447 2458 2.067932 CTTGGGACAGGAACCAGGCA 62.068 60.000 0.00 0.00 42.39 4.75
3369 3579 5.676079 GCGCACATTTGTAAGTATGGATGTT 60.676 40.000 0.30 0.00 0.00 2.71
3508 3718 2.203523 AGTGCAGCACCAATGGCA 60.204 55.556 22.41 0.00 34.49 4.92
5501 6104 7.441836 TGTGTCTTATCTGTATTTCAGTGTGT 58.558 34.615 0.00 0.00 43.97 3.72
5502 6105 7.384932 TGTGTCTTATCTGTATTTCAGTGTGTG 59.615 37.037 0.00 0.00 43.97 3.82
5663 6297 7.185565 CCTCTCTCCCCTGATTCTACAATATA 58.814 42.308 0.00 0.00 0.00 0.86
5668 6302 9.268282 TCTCCCCTGATTCTACAATATATAACC 57.732 37.037 0.00 0.00 0.00 2.85
5669 6303 8.074613 TCCCCTGATTCTACAATATATAACCG 57.925 38.462 0.00 0.00 0.00 4.44
5670 6304 6.761714 CCCCTGATTCTACAATATATAACCGC 59.238 42.308 0.00 0.00 0.00 5.68
5671 6305 7.327975 CCCTGATTCTACAATATATAACCGCA 58.672 38.462 0.00 0.00 0.00 5.69
5672 6306 7.492669 CCCTGATTCTACAATATATAACCGCAG 59.507 40.741 0.00 0.00 0.00 5.18
5673 6307 8.251026 CCTGATTCTACAATATATAACCGCAGA 58.749 37.037 0.00 0.00 0.00 4.26
5674 6308 9.809096 CTGATTCTACAATATATAACCGCAGAT 57.191 33.333 0.00 0.00 0.00 2.90
5675 6309 9.586435 TGATTCTACAATATATAACCGCAGATG 57.414 33.333 0.00 0.00 0.00 2.90
5676 6310 7.827819 TTCTACAATATATAACCGCAGATGC 57.172 36.000 0.00 0.00 37.78 3.91
5677 6311 6.930731 TCTACAATATATAACCGCAGATGCA 58.069 36.000 5.55 0.00 42.21 3.96
5678 6312 7.382898 TCTACAATATATAACCGCAGATGCAA 58.617 34.615 5.55 0.00 42.21 4.08
5679 6313 6.875948 ACAATATATAACCGCAGATGCAAA 57.124 33.333 5.55 0.00 42.21 3.68
5680 6314 7.270757 ACAATATATAACCGCAGATGCAAAA 57.729 32.000 5.55 0.00 42.21 2.44
5681 6315 7.711846 ACAATATATAACCGCAGATGCAAAAA 58.288 30.769 5.55 0.00 42.21 1.94
5703 6337 6.529463 AAAAACTTAACTCACATGCATTGC 57.471 33.333 0.00 0.46 0.00 3.56
5704 6338 4.852134 AACTTAACTCACATGCATTGCA 57.148 36.364 14.72 14.72 44.86 4.08
5705 6339 4.852134 ACTTAACTCACATGCATTGCAA 57.148 36.364 16.46 0.00 43.62 4.08
5706 6340 5.199024 ACTTAACTCACATGCATTGCAAA 57.801 34.783 16.46 1.73 43.62 3.68
5707 6341 5.599732 ACTTAACTCACATGCATTGCAAAA 58.400 33.333 16.46 0.72 43.62 2.44
5708 6342 5.693104 ACTTAACTCACATGCATTGCAAAAG 59.307 36.000 16.46 12.34 43.62 2.27
5709 6343 3.738830 ACTCACATGCATTGCAAAAGT 57.261 38.095 16.46 12.94 43.62 2.66
5710 6344 3.386486 ACTCACATGCATTGCAAAAGTG 58.614 40.909 24.44 24.44 43.62 3.16
5711 6345 3.068448 ACTCACATGCATTGCAAAAGTGA 59.932 39.130 27.85 27.85 43.62 3.41
5712 6346 3.382855 TCACATGCATTGCAAAAGTGAC 58.617 40.909 26.91 0.00 43.62 3.67
5713 6347 2.477375 CACATGCATTGCAAAAGTGACC 59.523 45.455 25.42 0.00 43.62 4.02
5714 6348 2.366266 ACATGCATTGCAAAAGTGACCT 59.634 40.909 16.46 0.00 43.62 3.85
5715 6349 2.798976 TGCATTGCAAAAGTGACCTC 57.201 45.000 9.33 0.00 34.76 3.85
5716 6350 2.030371 TGCATTGCAAAAGTGACCTCA 58.970 42.857 9.33 0.00 34.76 3.86
5717 6351 2.629137 TGCATTGCAAAAGTGACCTCAT 59.371 40.909 9.33 0.00 34.76 2.90
5718 6352 3.069872 TGCATTGCAAAAGTGACCTCATT 59.930 39.130 9.33 0.00 34.76 2.57
5719 6353 4.280425 TGCATTGCAAAAGTGACCTCATTA 59.720 37.500 9.33 0.00 34.76 1.90
5720 6354 5.047164 TGCATTGCAAAAGTGACCTCATTAT 60.047 36.000 9.33 0.00 34.76 1.28
5721 6355 5.290158 GCATTGCAAAAGTGACCTCATTATG 59.710 40.000 1.71 0.00 0.00 1.90
5722 6356 6.623486 CATTGCAAAAGTGACCTCATTATGA 58.377 36.000 1.71 0.00 0.00 2.15
5723 6357 6.647334 TTGCAAAAGTGACCTCATTATGAA 57.353 33.333 0.00 0.00 0.00 2.57
5724 6358 6.839124 TGCAAAAGTGACCTCATTATGAAT 57.161 33.333 0.00 0.00 0.00 2.57
5725 6359 6.855836 TGCAAAAGTGACCTCATTATGAATC 58.144 36.000 0.00 0.00 0.00 2.52
5726 6360 6.660521 TGCAAAAGTGACCTCATTATGAATCT 59.339 34.615 0.00 0.00 0.00 2.40
5727 6361 7.828717 TGCAAAAGTGACCTCATTATGAATCTA 59.171 33.333 0.00 0.00 0.00 1.98
5728 6362 8.844244 GCAAAAGTGACCTCATTATGAATCTAT 58.156 33.333 0.00 0.00 0.00 1.98
5759 6393 9.003658 AGATGAGTACCAAACAAATTTCTAGTG 57.996 33.333 0.00 0.00 0.00 2.74
5760 6394 8.918202 ATGAGTACCAAACAAATTTCTAGTGA 57.082 30.769 0.00 0.00 0.00 3.41
5761 6395 8.740123 TGAGTACCAAACAAATTTCTAGTGAA 57.260 30.769 0.00 0.00 0.00 3.18
5762 6396 8.836413 TGAGTACCAAACAAATTTCTAGTGAAG 58.164 33.333 0.00 0.00 33.28 3.02
5763 6397 8.747538 AGTACCAAACAAATTTCTAGTGAAGT 57.252 30.769 0.00 0.00 33.28 3.01
5764 6398 9.841295 AGTACCAAACAAATTTCTAGTGAAGTA 57.159 29.630 0.00 0.00 33.28 2.24
5767 6401 9.349713 ACCAAACAAATTTCTAGTGAAGTATCA 57.650 29.630 0.00 0.00 33.28 2.15
5785 6419 9.520204 GAAGTATCATCACAAAAATGGTAATGG 57.480 33.333 0.00 0.00 0.00 3.16
5786 6420 8.593945 AGTATCATCACAAAAATGGTAATGGT 57.406 30.769 0.00 0.00 0.00 3.55
5787 6421 9.693739 AGTATCATCACAAAAATGGTAATGGTA 57.306 29.630 0.00 0.00 0.00 3.25
5790 6424 8.415950 TCATCACAAAAATGGTAATGGTAAGT 57.584 30.769 0.00 0.00 0.00 2.24
5791 6425 8.303156 TCATCACAAAAATGGTAATGGTAAGTG 58.697 33.333 0.00 0.00 0.00 3.16
5792 6426 6.987386 TCACAAAAATGGTAATGGTAAGTGG 58.013 36.000 0.00 0.00 0.00 4.00
5793 6427 6.778069 TCACAAAAATGGTAATGGTAAGTGGA 59.222 34.615 0.00 0.00 0.00 4.02
5794 6428 7.287927 TCACAAAAATGGTAATGGTAAGTGGAA 59.712 33.333 0.00 0.00 0.00 3.53
5795 6429 7.928706 CACAAAAATGGTAATGGTAAGTGGAAA 59.071 33.333 0.00 0.00 0.00 3.13
5796 6430 8.147704 ACAAAAATGGTAATGGTAAGTGGAAAG 58.852 33.333 0.00 0.00 0.00 2.62
5797 6431 6.850752 AAATGGTAATGGTAAGTGGAAAGG 57.149 37.500 0.00 0.00 0.00 3.11
5798 6432 5.789574 ATGGTAATGGTAAGTGGAAAGGA 57.210 39.130 0.00 0.00 0.00 3.36
5799 6433 4.913784 TGGTAATGGTAAGTGGAAAGGAC 58.086 43.478 0.00 0.00 0.00 3.85
5800 6434 4.351407 TGGTAATGGTAAGTGGAAAGGACA 59.649 41.667 0.00 0.00 0.00 4.02
5801 6435 5.163077 TGGTAATGGTAAGTGGAAAGGACAA 60.163 40.000 0.00 0.00 0.00 3.18
5802 6436 5.771165 GGTAATGGTAAGTGGAAAGGACAAA 59.229 40.000 0.00 0.00 0.00 2.83
5803 6437 6.072119 GGTAATGGTAAGTGGAAAGGACAAAG 60.072 42.308 0.00 0.00 0.00 2.77
5804 6438 4.781775 TGGTAAGTGGAAAGGACAAAGA 57.218 40.909 0.00 0.00 0.00 2.52
5805 6439 4.457466 TGGTAAGTGGAAAGGACAAAGAC 58.543 43.478 0.00 0.00 0.00 3.01
5806 6440 4.165372 TGGTAAGTGGAAAGGACAAAGACT 59.835 41.667 0.00 0.00 0.00 3.24
5807 6441 4.515567 GGTAAGTGGAAAGGACAAAGACTG 59.484 45.833 0.00 0.00 0.00 3.51
5808 6442 2.576615 AGTGGAAAGGACAAAGACTGC 58.423 47.619 0.00 0.00 0.00 4.40
5809 6443 2.092429 AGTGGAAAGGACAAAGACTGCA 60.092 45.455 0.00 0.00 0.00 4.41
5810 6444 2.033424 GTGGAAAGGACAAAGACTGCAC 59.967 50.000 0.00 0.00 0.00 4.57
5811 6445 2.297701 GGAAAGGACAAAGACTGCACA 58.702 47.619 0.00 0.00 0.00 4.57
5812 6446 2.687935 GGAAAGGACAAAGACTGCACAA 59.312 45.455 0.00 0.00 0.00 3.33
5813 6447 3.319122 GGAAAGGACAAAGACTGCACAAT 59.681 43.478 0.00 0.00 0.00 2.71
5814 6448 4.202151 GGAAAGGACAAAGACTGCACAATT 60.202 41.667 0.00 0.00 0.00 2.32
5815 6449 3.996150 AGGACAAAGACTGCACAATTG 57.004 42.857 3.24 3.24 0.00 2.32
5816 6450 3.290710 AGGACAAAGACTGCACAATTGT 58.709 40.909 4.92 4.92 36.96 2.71
5817 6451 3.701040 AGGACAAAGACTGCACAATTGTT 59.299 39.130 8.77 0.00 34.59 2.83
5818 6452 4.887071 AGGACAAAGACTGCACAATTGTTA 59.113 37.500 8.77 0.00 34.59 2.41
5819 6453 5.536161 AGGACAAAGACTGCACAATTGTTAT 59.464 36.000 8.77 0.00 34.59 1.89
5820 6454 5.858581 GGACAAAGACTGCACAATTGTTATC 59.141 40.000 8.77 4.33 34.59 1.75
5821 6455 6.294176 GGACAAAGACTGCACAATTGTTATCT 60.294 38.462 8.77 6.59 34.59 1.98
5822 6456 7.094805 GGACAAAGACTGCACAATTGTTATCTA 60.095 37.037 8.77 0.00 34.59 1.98
5823 6457 8.340618 ACAAAGACTGCACAATTGTTATCTAT 57.659 30.769 8.77 0.00 30.50 1.98
5824 6458 8.239314 ACAAAGACTGCACAATTGTTATCTATG 58.761 33.333 8.77 4.65 30.50 2.23
5825 6459 8.453320 CAAAGACTGCACAATTGTTATCTATGA 58.547 33.333 8.77 0.00 0.00 2.15
5826 6460 8.565896 AAGACTGCACAATTGTTATCTATGAA 57.434 30.769 8.77 0.00 0.00 2.57
5827 6461 8.565896 AGACTGCACAATTGTTATCTATGAAA 57.434 30.769 8.77 0.00 0.00 2.69
5828 6462 9.013229 AGACTGCACAATTGTTATCTATGAAAA 57.987 29.630 8.77 0.00 0.00 2.29
5829 6463 9.624697 GACTGCACAATTGTTATCTATGAAAAA 57.375 29.630 8.77 0.00 0.00 1.94
5830 6464 9.410556 ACTGCACAATTGTTATCTATGAAAAAC 57.589 29.630 8.77 0.00 0.00 2.43
5831 6465 9.630098 CTGCACAATTGTTATCTATGAAAAACT 57.370 29.630 8.77 0.00 0.00 2.66
5832 6466 9.409312 TGCACAATTGTTATCTATGAAAAACTG 57.591 29.630 8.77 0.00 0.00 3.16
5833 6467 8.863049 GCACAATTGTTATCTATGAAAAACTGG 58.137 33.333 8.77 0.00 0.00 4.00
5956 6590 9.956640 AATTTATTCAATCACTCTGAGAAGACT 57.043 29.630 12.44 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 1.066002 GTGTCTTGCTTGCTGCTTTGA 59.934 47.619 0.00 0.00 43.37 2.69
254 256 3.729965 AAGAGCTCTGCCGCGATGG 62.730 63.158 19.06 0.00 42.50 3.51
255 257 2.202851 AAGAGCTCTGCCGCGATG 60.203 61.111 19.06 0.00 34.40 3.84
256 258 2.202851 CAAGAGCTCTGCCGCGAT 60.203 61.111 19.06 0.00 34.40 4.58
257 259 4.441695 CCAAGAGCTCTGCCGCGA 62.442 66.667 19.06 0.00 34.40 5.87
258 260 4.441695 TCCAAGAGCTCTGCCGCG 62.442 66.667 19.06 0.00 34.40 6.46
259 261 2.817396 GTCCAAGAGCTCTGCCGC 60.817 66.667 19.06 4.94 0.00 6.53
260 262 1.004560 TTGTCCAAGAGCTCTGCCG 60.005 57.895 19.06 9.04 0.00 5.69
261 263 0.322975 TCTTGTCCAAGAGCTCTGCC 59.677 55.000 19.06 6.14 42.06 4.85
262 264 1.270518 TGTCTTGTCCAAGAGCTCTGC 60.271 52.381 19.06 8.82 46.93 4.26
263 265 2.805099 GTTGTCTTGTCCAAGAGCTCTG 59.195 50.000 19.06 11.38 46.93 3.35
264 266 2.224402 GGTTGTCTTGTCCAAGAGCTCT 60.224 50.000 11.45 11.45 46.93 4.09
265 267 2.147150 GGTTGTCTTGTCCAAGAGCTC 58.853 52.381 5.27 5.27 46.93 4.09
266 268 1.202818 GGGTTGTCTTGTCCAAGAGCT 60.203 52.381 9.90 0.00 46.93 4.09
267 269 1.202818 AGGGTTGTCTTGTCCAAGAGC 60.203 52.381 9.90 6.38 46.93 4.09
268 270 2.772287 GAGGGTTGTCTTGTCCAAGAG 58.228 52.381 9.90 0.00 46.93 2.85
269 271 1.070134 CGAGGGTTGTCTTGTCCAAGA 59.930 52.381 5.64 5.64 44.47 3.02
270 272 1.202651 ACGAGGGTTGTCTTGTCCAAG 60.203 52.381 0.47 0.47 39.71 3.61
271 273 0.834612 ACGAGGGTTGTCTTGTCCAA 59.165 50.000 0.00 0.00 0.00 3.53
272 274 0.834612 AACGAGGGTTGTCTTGTCCA 59.165 50.000 0.00 0.00 34.37 4.02
273 275 2.036862 ACTAACGAGGGTTGTCTTGTCC 59.963 50.000 0.00 0.00 36.90 4.02
274 276 3.382048 ACTAACGAGGGTTGTCTTGTC 57.618 47.619 0.00 0.00 36.90 3.18
275 277 3.387050 AGAACTAACGAGGGTTGTCTTGT 59.613 43.478 0.00 0.00 36.90 3.16
276 278 3.991367 AGAACTAACGAGGGTTGTCTTG 58.009 45.455 0.00 0.00 36.90 3.02
277 279 4.684484 AAGAACTAACGAGGGTTGTCTT 57.316 40.909 0.00 0.00 36.90 3.01
278 280 4.021632 GGTAAGAACTAACGAGGGTTGTCT 60.022 45.833 0.00 0.00 36.90 3.41
279 281 4.240888 GGTAAGAACTAACGAGGGTTGTC 58.759 47.826 0.00 0.00 36.90 3.18
280 282 3.642848 TGGTAAGAACTAACGAGGGTTGT 59.357 43.478 0.00 0.00 36.90 3.32
281 283 4.261578 TGGTAAGAACTAACGAGGGTTG 57.738 45.455 0.00 0.00 36.90 3.77
282 284 5.247792 AGAATGGTAAGAACTAACGAGGGTT 59.752 40.000 0.00 0.00 40.20 4.11
283 285 4.776308 AGAATGGTAAGAACTAACGAGGGT 59.224 41.667 0.00 0.00 0.00 4.34
284 286 5.340439 AGAATGGTAAGAACTAACGAGGG 57.660 43.478 0.00 0.00 0.00 4.30
285 287 6.631962 AGAAGAATGGTAAGAACTAACGAGG 58.368 40.000 0.00 0.00 0.00 4.63
286 288 8.535690 AAAGAAGAATGGTAAGAACTAACGAG 57.464 34.615 0.00 0.00 0.00 4.18
287 289 9.985730 TTAAAGAAGAATGGTAAGAACTAACGA 57.014 29.630 0.00 0.00 0.00 3.85
293 295 9.894783 GGTTCTTTAAAGAAGAATGGTAAGAAC 57.105 33.333 27.04 13.33 45.01 3.01
294 296 9.635404 TGGTTCTTTAAAGAAGAATGGTAAGAA 57.365 29.630 27.04 2.46 45.01 2.52
295 297 9.635404 TTGGTTCTTTAAAGAAGAATGGTAAGA 57.365 29.630 27.04 2.65 45.01 2.10
296 298 9.899226 CTTGGTTCTTTAAAGAAGAATGGTAAG 57.101 33.333 27.04 18.29 45.01 2.34
297 299 9.416284 ACTTGGTTCTTTAAAGAAGAATGGTAA 57.584 29.630 27.04 14.38 45.01 2.85
298 300 8.990163 ACTTGGTTCTTTAAAGAAGAATGGTA 57.010 30.769 27.04 4.55 45.01 3.25
299 301 7.898014 ACTTGGTTCTTTAAAGAAGAATGGT 57.102 32.000 27.04 18.90 45.01 3.55
312 314 9.293404 CCATCATGATGATATACTTGGTTCTTT 57.707 33.333 32.71 0.00 41.20 2.52
313 315 7.392673 GCCATCATGATGATATACTTGGTTCTT 59.607 37.037 32.71 0.00 41.20 2.52
314 316 6.883217 GCCATCATGATGATATACTTGGTTCT 59.117 38.462 32.71 0.00 41.20 3.01
315 317 6.094603 GGCCATCATGATGATATACTTGGTTC 59.905 42.308 32.71 10.48 41.20 3.62
316 318 5.948162 GGCCATCATGATGATATACTTGGTT 59.052 40.000 32.71 0.00 41.20 3.67
317 319 5.503927 GGCCATCATGATGATATACTTGGT 58.496 41.667 32.71 0.00 41.20 3.67
318 320 4.885907 GGGCCATCATGATGATATACTTGG 59.114 45.833 32.71 17.74 41.20 3.61
319 321 4.573607 CGGGCCATCATGATGATATACTTG 59.426 45.833 32.71 16.44 41.20 3.16
320 322 4.225942 ACGGGCCATCATGATGATATACTT 59.774 41.667 32.71 11.68 41.20 2.24
321 323 3.776969 ACGGGCCATCATGATGATATACT 59.223 43.478 32.71 10.72 41.20 2.12
322 324 3.873361 CACGGGCCATCATGATGATATAC 59.127 47.826 32.71 18.05 41.20 1.47
323 325 3.774216 TCACGGGCCATCATGATGATATA 59.226 43.478 32.71 11.42 41.20 0.86
324 326 2.573009 TCACGGGCCATCATGATGATAT 59.427 45.455 32.71 13.18 41.20 1.63
325 327 1.977129 TCACGGGCCATCATGATGATA 59.023 47.619 32.71 10.00 41.20 2.15
326 328 0.766752 TCACGGGCCATCATGATGAT 59.233 50.000 32.71 12.55 41.20 2.45
327 329 0.545646 TTCACGGGCCATCATGATGA 59.454 50.000 32.71 12.58 41.20 2.92
328 330 0.664761 GTTCACGGGCCATCATGATG 59.335 55.000 25.97 25.97 38.51 3.07
329 331 0.466189 GGTTCACGGGCCATCATGAT 60.466 55.000 4.39 1.18 0.00 2.45
330 332 1.077787 GGTTCACGGGCCATCATGA 60.078 57.895 4.39 0.00 0.00 3.07
331 333 2.120909 GGGTTCACGGGCCATCATG 61.121 63.158 4.39 0.00 0.00 3.07
332 334 2.275418 GGGTTCACGGGCCATCAT 59.725 61.111 4.39 0.00 0.00 2.45
333 335 4.041762 GGGGTTCACGGGCCATCA 62.042 66.667 4.39 0.00 0.00 3.07
334 336 3.728373 AGGGGTTCACGGGCCATC 61.728 66.667 4.39 0.00 0.00 3.51
335 337 4.047125 CAGGGGTTCACGGGCCAT 62.047 66.667 4.39 0.00 0.00 4.40
337 339 2.414658 TTTACAGGGGTTCACGGGCC 62.415 60.000 0.00 0.00 0.00 5.80
338 340 0.537828 TTTTACAGGGGTTCACGGGC 60.538 55.000 0.00 0.00 0.00 6.13
339 341 1.241165 GTTTTACAGGGGTTCACGGG 58.759 55.000 0.00 0.00 0.00 5.28
340 342 1.605232 GTGTTTTACAGGGGTTCACGG 59.395 52.381 0.00 0.00 0.00 4.94
341 343 2.290464 TGTGTTTTACAGGGGTTCACG 58.710 47.619 0.00 0.00 33.42 4.35
342 344 4.339814 TCATTGTGTTTTACAGGGGTTCAC 59.660 41.667 0.00 0.00 41.10 3.18
343 345 4.537751 TCATTGTGTTTTACAGGGGTTCA 58.462 39.130 0.00 0.00 41.10 3.18
344 346 5.722021 ATCATTGTGTTTTACAGGGGTTC 57.278 39.130 0.00 0.00 41.10 3.62
345 347 5.185056 GCTATCATTGTGTTTTACAGGGGTT 59.815 40.000 0.00 0.00 41.10 4.11
346 348 4.705023 GCTATCATTGTGTTTTACAGGGGT 59.295 41.667 0.00 0.00 41.10 4.95
347 349 4.704540 TGCTATCATTGTGTTTTACAGGGG 59.295 41.667 0.00 0.00 41.10 4.79
348 350 5.415701 ACTGCTATCATTGTGTTTTACAGGG 59.584 40.000 0.00 0.00 41.10 4.45
349 351 6.500684 ACTGCTATCATTGTGTTTTACAGG 57.499 37.500 0.00 0.00 41.10 4.00
351 353 9.838975 CATTAACTGCTATCATTGTGTTTTACA 57.161 29.630 0.00 0.00 37.56 2.41
352 354 9.289303 CCATTAACTGCTATCATTGTGTTTTAC 57.711 33.333 0.00 0.00 0.00 2.01
353 355 7.973388 GCCATTAACTGCTATCATTGTGTTTTA 59.027 33.333 0.00 0.00 0.00 1.52
354 356 6.813152 GCCATTAACTGCTATCATTGTGTTTT 59.187 34.615 0.00 0.00 0.00 2.43
355 357 6.071447 TGCCATTAACTGCTATCATTGTGTTT 60.071 34.615 0.38 0.00 0.00 2.83
356 358 5.418524 TGCCATTAACTGCTATCATTGTGTT 59.581 36.000 0.38 0.00 0.00 3.32
357 359 4.949238 TGCCATTAACTGCTATCATTGTGT 59.051 37.500 0.38 0.00 0.00 3.72
358 360 5.503662 TGCCATTAACTGCTATCATTGTG 57.496 39.130 0.38 0.00 0.00 3.33
359 361 6.772233 TGTATGCCATTAACTGCTATCATTGT 59.228 34.615 0.00 0.00 0.00 2.71
360 362 7.205737 TGTATGCCATTAACTGCTATCATTG 57.794 36.000 0.00 0.00 0.00 2.82
361 363 9.690913 ATATGTATGCCATTAACTGCTATCATT 57.309 29.630 0.00 0.00 34.86 2.57
400 402 9.730705 AGTTTGCTGCATTCATAGTATATATGT 57.269 29.630 1.84 0.00 0.00 2.29
421 423 5.747565 TGTTTCGTAGATGAGCAAAGTTTG 58.252 37.500 11.41 11.41 35.04 2.93
422 424 5.758296 TCTGTTTCGTAGATGAGCAAAGTTT 59.242 36.000 0.00 0.00 35.04 2.66
423 425 5.297547 TCTGTTTCGTAGATGAGCAAAGTT 58.702 37.500 0.00 0.00 35.04 2.66
424 426 4.883083 TCTGTTTCGTAGATGAGCAAAGT 58.117 39.130 0.00 0.00 35.04 2.66
425 427 5.845985 TTCTGTTTCGTAGATGAGCAAAG 57.154 39.130 0.00 0.00 35.04 2.77
426 428 9.031360 GTATATTCTGTTTCGTAGATGAGCAAA 57.969 33.333 0.00 0.00 35.04 3.68
427 429 8.414003 AGTATATTCTGTTTCGTAGATGAGCAA 58.586 33.333 0.00 0.00 35.04 3.91
428 430 7.941919 AGTATATTCTGTTTCGTAGATGAGCA 58.058 34.615 0.00 0.00 35.04 4.26
429 431 8.804688 AAGTATATTCTGTTTCGTAGATGAGC 57.195 34.615 0.00 0.00 35.04 4.26
430 432 9.952188 TGAAGTATATTCTGTTTCGTAGATGAG 57.048 33.333 0.00 0.00 35.04 2.90
433 435 9.613957 CGATGAAGTATATTCTGTTTCGTAGAT 57.386 33.333 0.00 0.00 35.04 1.98
434 436 8.618677 ACGATGAAGTATATTCTGTTTCGTAGA 58.381 33.333 10.10 0.00 34.70 2.59
435 437 8.783999 ACGATGAAGTATATTCTGTTTCGTAG 57.216 34.615 10.10 0.00 34.70 3.51
436 438 9.577110 AAACGATGAAGTATATTCTGTTTCGTA 57.423 29.630 11.40 0.00 35.32 3.43
437 439 8.475331 AAACGATGAAGTATATTCTGTTTCGT 57.525 30.769 0.00 7.46 37.67 3.85
448 450 9.865321 GCTAACCCATATAAACGATGAAGTATA 57.135 33.333 0.00 0.00 0.00 1.47
449 451 8.372459 TGCTAACCCATATAAACGATGAAGTAT 58.628 33.333 0.00 0.00 0.00 2.12
450 452 7.728148 TGCTAACCCATATAAACGATGAAGTA 58.272 34.615 0.00 0.00 0.00 2.24
451 453 6.588204 TGCTAACCCATATAAACGATGAAGT 58.412 36.000 0.00 0.00 0.00 3.01
452 454 7.672983 ATGCTAACCCATATAAACGATGAAG 57.327 36.000 0.00 0.00 0.00 3.02
453 455 9.733556 AATATGCTAACCCATATAAACGATGAA 57.266 29.630 0.00 0.00 37.41 2.57
464 466 9.262240 TGCAGTACTATAATATGCTAACCCATA 57.738 33.333 0.00 0.00 37.76 2.74
465 467 8.041323 GTGCAGTACTATAATATGCTAACCCAT 58.959 37.037 0.00 0.00 37.76 4.00
466 468 7.015779 TGTGCAGTACTATAATATGCTAACCCA 59.984 37.037 0.00 0.00 37.76 4.51
467 469 7.383687 TGTGCAGTACTATAATATGCTAACCC 58.616 38.462 0.00 0.00 37.76 4.11
468 470 8.873830 CATGTGCAGTACTATAATATGCTAACC 58.126 37.037 0.00 0.00 37.76 2.85
469 471 9.424319 ACATGTGCAGTACTATAATATGCTAAC 57.576 33.333 0.00 0.00 37.76 2.34
472 474 7.761704 GCTACATGTGCAGTACTATAATATGCT 59.238 37.037 9.11 0.00 37.76 3.79
473 475 7.545615 TGCTACATGTGCAGTACTATAATATGC 59.454 37.037 9.11 0.00 35.31 3.14
474 476 8.986477 TGCTACATGTGCAGTACTATAATATG 57.014 34.615 9.11 1.27 35.31 1.78
475 477 9.996554 TTTGCTACATGTGCAGTACTATAATAT 57.003 29.630 18.08 0.00 41.71 1.28
476 478 9.825109 TTTTGCTACATGTGCAGTACTATAATA 57.175 29.630 18.08 2.88 41.71 0.98
477 479 8.731275 TTTTGCTACATGTGCAGTACTATAAT 57.269 30.769 18.08 0.00 41.71 1.28
478 480 8.554835 TTTTTGCTACATGTGCAGTACTATAA 57.445 30.769 18.08 9.01 41.71 0.98
479 481 8.731275 ATTTTTGCTACATGTGCAGTACTATA 57.269 30.769 18.08 4.53 41.71 1.31
480 482 7.630242 ATTTTTGCTACATGTGCAGTACTAT 57.370 32.000 18.08 9.53 41.71 2.12
481 483 7.065324 GGTATTTTTGCTACATGTGCAGTACTA 59.935 37.037 18.08 9.87 41.71 1.82
482 484 5.964958 ATTTTTGCTACATGTGCAGTACT 57.035 34.783 18.08 0.00 41.71 2.73
483 485 6.027749 GGTATTTTTGCTACATGTGCAGTAC 58.972 40.000 18.08 17.37 41.71 2.73
484 486 5.707764 TGGTATTTTTGCTACATGTGCAGTA 59.292 36.000 18.08 10.91 41.71 2.74
485 487 4.522405 TGGTATTTTTGCTACATGTGCAGT 59.478 37.500 18.08 11.16 41.71 4.40
486 488 5.058149 TGGTATTTTTGCTACATGTGCAG 57.942 39.130 18.08 7.08 41.71 4.41
487 489 5.459536 TTGGTATTTTTGCTACATGTGCA 57.540 34.783 9.11 13.33 38.80 4.57
488 490 4.327087 GCTTGGTATTTTTGCTACATGTGC 59.673 41.667 9.11 10.76 0.00 4.57
489 491 5.468592 TGCTTGGTATTTTTGCTACATGTG 58.531 37.500 9.11 0.00 0.00 3.21
490 492 5.720371 TGCTTGGTATTTTTGCTACATGT 57.280 34.783 2.69 2.69 0.00 3.21
491 493 5.348451 GGTTGCTTGGTATTTTTGCTACATG 59.652 40.000 0.00 0.00 32.73 3.21
492 494 5.011533 TGGTTGCTTGGTATTTTTGCTACAT 59.988 36.000 0.00 0.00 32.73 2.29
493 495 4.342378 TGGTTGCTTGGTATTTTTGCTACA 59.658 37.500 0.00 0.00 32.73 2.74
494 496 4.877282 TGGTTGCTTGGTATTTTTGCTAC 58.123 39.130 0.00 0.00 0.00 3.58
495 497 5.303078 TCTTGGTTGCTTGGTATTTTTGCTA 59.697 36.000 0.00 0.00 0.00 3.49
496 498 4.100808 TCTTGGTTGCTTGGTATTTTTGCT 59.899 37.500 0.00 0.00 0.00 3.91
497 499 4.376146 TCTTGGTTGCTTGGTATTTTTGC 58.624 39.130 0.00 0.00 0.00 3.68
498 500 5.236263 GGTTCTTGGTTGCTTGGTATTTTTG 59.764 40.000 0.00 0.00 0.00 2.44
499 501 5.130311 AGGTTCTTGGTTGCTTGGTATTTTT 59.870 36.000 0.00 0.00 0.00 1.94
500 502 4.653801 AGGTTCTTGGTTGCTTGGTATTTT 59.346 37.500 0.00 0.00 0.00 1.82
501 503 4.223144 AGGTTCTTGGTTGCTTGGTATTT 58.777 39.130 0.00 0.00 0.00 1.40
502 504 3.826729 GAGGTTCTTGGTTGCTTGGTATT 59.173 43.478 0.00 0.00 0.00 1.89
503 505 3.421844 GAGGTTCTTGGTTGCTTGGTAT 58.578 45.455 0.00 0.00 0.00 2.73
504 506 2.488347 GGAGGTTCTTGGTTGCTTGGTA 60.488 50.000 0.00 0.00 0.00 3.25
505 507 1.692411 GAGGTTCTTGGTTGCTTGGT 58.308 50.000 0.00 0.00 0.00 3.67
506 508 0.961753 GGAGGTTCTTGGTTGCTTGG 59.038 55.000 0.00 0.00 0.00 3.61
507 509 1.610522 CAGGAGGTTCTTGGTTGCTTG 59.389 52.381 0.00 0.00 0.00 4.01
508 510 1.479389 CCAGGAGGTTCTTGGTTGCTT 60.479 52.381 0.00 0.00 38.66 3.91
509 511 0.111253 CCAGGAGGTTCTTGGTTGCT 59.889 55.000 0.00 0.00 38.66 3.91
510 512 0.110486 TCCAGGAGGTTCTTGGTTGC 59.890 55.000 7.05 0.00 43.40 4.17
511 513 2.040278 TGATCCAGGAGGTTCTTGGTTG 59.960 50.000 7.05 0.00 43.40 3.77
512 514 2.348472 TGATCCAGGAGGTTCTTGGTT 58.652 47.619 7.05 0.00 43.40 3.67
513 515 2.040412 GTTGATCCAGGAGGTTCTTGGT 59.960 50.000 7.05 0.00 43.40 3.67
514 516 2.040278 TGTTGATCCAGGAGGTTCTTGG 59.960 50.000 0.00 1.10 44.20 3.61
515 517 3.423539 TGTTGATCCAGGAGGTTCTTG 57.576 47.619 0.00 0.00 35.14 3.02
516 518 3.138283 TGTTGTTGATCCAGGAGGTTCTT 59.862 43.478 0.00 0.00 35.14 2.52
517 519 2.711009 TGTTGTTGATCCAGGAGGTTCT 59.289 45.455 0.00 0.00 35.14 3.01
518 520 3.140325 TGTTGTTGATCCAGGAGGTTC 57.860 47.619 0.00 0.00 35.89 3.62
519 521 3.593442 TTGTTGTTGATCCAGGAGGTT 57.407 42.857 0.00 0.00 35.89 3.50
520 522 3.593442 TTTGTTGTTGATCCAGGAGGT 57.407 42.857 0.00 0.00 35.89 3.85
521 523 4.099266 TGTTTTTGTTGTTGATCCAGGAGG 59.901 41.667 0.00 0.00 0.00 4.30
522 524 5.261209 TGTTTTTGTTGTTGATCCAGGAG 57.739 39.130 0.00 0.00 0.00 3.69
523 525 5.415221 GTTGTTTTTGTTGTTGATCCAGGA 58.585 37.500 0.00 0.00 0.00 3.86
524 526 4.570369 GGTTGTTTTTGTTGTTGATCCAGG 59.430 41.667 0.00 0.00 0.00 4.45
525 527 5.174395 TGGTTGTTTTTGTTGTTGATCCAG 58.826 37.500 0.00 0.00 0.00 3.86
526 528 5.152623 TGGTTGTTTTTGTTGTTGATCCA 57.847 34.783 0.00 0.00 0.00 3.41
527 529 5.872070 TCTTGGTTGTTTTTGTTGTTGATCC 59.128 36.000 0.00 0.00 0.00 3.36
528 530 6.959671 TCTTGGTTGTTTTTGTTGTTGATC 57.040 33.333 0.00 0.00 0.00 2.92
529 531 6.183360 GCATCTTGGTTGTTTTTGTTGTTGAT 60.183 34.615 0.00 0.00 0.00 2.57
530 532 5.121454 GCATCTTGGTTGTTTTTGTTGTTGA 59.879 36.000 0.00 0.00 0.00 3.18
531 533 5.106791 TGCATCTTGGTTGTTTTTGTTGTTG 60.107 36.000 0.00 0.00 0.00 3.33
532 534 4.999950 TGCATCTTGGTTGTTTTTGTTGTT 59.000 33.333 0.00 0.00 0.00 2.83
533 535 4.391523 GTGCATCTTGGTTGTTTTTGTTGT 59.608 37.500 0.00 0.00 0.00 3.32
534 536 4.630940 AGTGCATCTTGGTTGTTTTTGTTG 59.369 37.500 0.00 0.00 0.00 3.33
535 537 4.630940 CAGTGCATCTTGGTTGTTTTTGTT 59.369 37.500 0.00 0.00 0.00 2.83
536 538 4.081752 TCAGTGCATCTTGGTTGTTTTTGT 60.082 37.500 0.00 0.00 0.00 2.83
537 539 4.268405 GTCAGTGCATCTTGGTTGTTTTTG 59.732 41.667 0.00 0.00 0.00 2.44
538 540 4.160252 AGTCAGTGCATCTTGGTTGTTTTT 59.840 37.500 0.00 0.00 0.00 1.94
539 541 3.701040 AGTCAGTGCATCTTGGTTGTTTT 59.299 39.130 0.00 0.00 0.00 2.43
540 542 3.290710 AGTCAGTGCATCTTGGTTGTTT 58.709 40.909 0.00 0.00 0.00 2.83
541 543 2.936202 AGTCAGTGCATCTTGGTTGTT 58.064 42.857 0.00 0.00 0.00 2.83
542 544 2.645838 AGTCAGTGCATCTTGGTTGT 57.354 45.000 0.00 0.00 0.00 3.32
543 545 3.996150 AAAGTCAGTGCATCTTGGTTG 57.004 42.857 0.00 0.00 0.00 3.77
544 546 3.953612 TGAAAAGTCAGTGCATCTTGGTT 59.046 39.130 0.00 0.00 0.00 3.67
545 547 3.554934 TGAAAAGTCAGTGCATCTTGGT 58.445 40.909 0.00 0.00 0.00 3.67
546 548 4.572985 TTGAAAAGTCAGTGCATCTTGG 57.427 40.909 0.00 0.00 34.49 3.61
547 549 6.671190 TGTATTGAAAAGTCAGTGCATCTTG 58.329 36.000 0.00 0.00 32.46 3.02
548 550 6.882610 TGTATTGAAAAGTCAGTGCATCTT 57.117 33.333 0.00 0.00 32.46 2.40
549 551 6.882610 TTGTATTGAAAAGTCAGTGCATCT 57.117 33.333 0.00 0.00 36.31 2.90
550 552 7.809331 TCATTTGTATTGAAAAGTCAGTGCATC 59.191 33.333 0.00 0.00 36.31 3.91
551 553 7.596248 GTCATTTGTATTGAAAAGTCAGTGCAT 59.404 33.333 0.00 0.00 36.31 3.96
552 554 6.917477 GTCATTTGTATTGAAAAGTCAGTGCA 59.083 34.615 0.00 0.00 34.95 4.57
553 555 7.141363 AGTCATTTGTATTGAAAAGTCAGTGC 58.859 34.615 0.00 0.00 34.49 4.40
581 583 9.094578 AGATAAGACACAGCCTAACATATATGT 57.905 33.333 12.75 12.75 44.20 2.29
582 584 9.363763 CAGATAAGACACAGCCTAACATATATG 57.636 37.037 11.29 11.29 0.00 1.78
583 585 9.094578 ACAGATAAGACACAGCCTAACATATAT 57.905 33.333 0.00 0.00 0.00 0.86
584 586 8.478775 ACAGATAAGACACAGCCTAACATATA 57.521 34.615 0.00 0.00 0.00 0.86
585 587 7.366847 ACAGATAAGACACAGCCTAACATAT 57.633 36.000 0.00 0.00 0.00 1.78
586 588 6.791867 ACAGATAAGACACAGCCTAACATA 57.208 37.500 0.00 0.00 0.00 2.29
592 594 6.299805 TGAAATACAGATAAGACACAGCCT 57.700 37.500 0.00 0.00 0.00 4.58
1101 1112 7.181125 AGTTCTATTTTCTGTATCACCTCAGGT 59.819 37.037 0.00 0.00 35.62 4.00
1623 1634 3.253188 CACGCCTTCCTTCAAATTCTGAA 59.747 43.478 0.00 0.00 41.93 3.02
1710 1721 3.477210 GTCAACTTCAACCTGACCTCT 57.523 47.619 0.00 0.00 34.63 3.69
1732 1743 1.092345 GCATTCGCTTCTCCAGTCCC 61.092 60.000 0.00 0.00 34.30 4.46
1850 1861 2.764572 CCCCTACCACGTATTTCTCTGT 59.235 50.000 0.00 0.00 0.00 3.41
2162 2173 3.042682 TCAAACTCAGTTGAGGTACCCA 58.957 45.455 8.74 3.39 42.17 4.51
2324 2335 5.049129 GCACTTAGAGAAAGCAAGTTCACAT 60.049 40.000 0.00 0.00 38.93 3.21
2447 2458 6.440647 ACGATCCATATACCACAATCCACTAT 59.559 38.462 0.00 0.00 0.00 2.12
3369 3579 3.366396 AGGCTCAGATTCTCGAAAGGTA 58.634 45.455 0.00 0.00 0.00 3.08
3473 3683 0.947244 CTCACCACTCAAGTTGCACC 59.053 55.000 0.00 0.00 0.00 5.01
3508 3718 1.075374 TGGTATTGGCTGCTCCTTGTT 59.925 47.619 0.00 0.00 35.26 2.83
5041 5494 3.068024 CCACCAACAAACACACAATAGCT 59.932 43.478 0.00 0.00 0.00 3.32
5680 6314 6.047870 TGCAATGCATGTGAGTTAAGTTTTT 58.952 32.000 2.72 0.00 31.71 1.94
5681 6315 5.599732 TGCAATGCATGTGAGTTAAGTTTT 58.400 33.333 2.72 0.00 31.71 2.43
5682 6316 5.199024 TGCAATGCATGTGAGTTAAGTTT 57.801 34.783 2.72 0.00 31.71 2.66
5683 6317 4.852134 TGCAATGCATGTGAGTTAAGTT 57.148 36.364 2.72 0.00 31.71 2.66
5684 6318 4.852134 TTGCAATGCATGTGAGTTAAGT 57.148 36.364 9.39 0.00 38.76 2.24
5685 6319 5.693104 ACTTTTGCAATGCATGTGAGTTAAG 59.307 36.000 9.39 5.71 38.76 1.85
5686 6320 5.462729 CACTTTTGCAATGCATGTGAGTTAA 59.537 36.000 22.46 5.82 38.76 2.01
5687 6321 4.983538 CACTTTTGCAATGCATGTGAGTTA 59.016 37.500 22.46 0.04 38.76 2.24
5688 6322 3.805422 CACTTTTGCAATGCATGTGAGTT 59.195 39.130 22.46 0.00 38.76 3.01
5689 6323 3.068448 TCACTTTTGCAATGCATGTGAGT 59.932 39.130 24.20 16.42 38.04 3.41
5690 6324 3.427528 GTCACTTTTGCAATGCATGTGAG 59.572 43.478 26.66 17.32 40.80 3.51
5691 6325 3.382855 GTCACTTTTGCAATGCATGTGA 58.617 40.909 24.20 24.20 39.34 3.58
5692 6326 2.477375 GGTCACTTTTGCAATGCATGTG 59.523 45.455 21.55 21.55 38.76 3.21
5693 6327 2.366266 AGGTCACTTTTGCAATGCATGT 59.634 40.909 9.39 5.98 38.76 3.21
5694 6328 2.991190 GAGGTCACTTTTGCAATGCATG 59.009 45.455 9.39 4.26 38.76 4.06
5695 6329 2.629137 TGAGGTCACTTTTGCAATGCAT 59.371 40.909 9.39 0.00 38.76 3.96
5696 6330 2.030371 TGAGGTCACTTTTGCAATGCA 58.970 42.857 2.72 2.72 36.47 3.96
5697 6331 2.798976 TGAGGTCACTTTTGCAATGC 57.201 45.000 0.00 0.00 0.00 3.56
5698 6332 6.623486 TCATAATGAGGTCACTTTTGCAATG 58.377 36.000 0.00 0.00 0.00 2.82
5699 6333 6.839124 TCATAATGAGGTCACTTTTGCAAT 57.161 33.333 0.00 0.00 0.00 3.56
5700 6334 6.647334 TTCATAATGAGGTCACTTTTGCAA 57.353 33.333 0.00 0.00 0.00 4.08
5701 6335 6.660521 AGATTCATAATGAGGTCACTTTTGCA 59.339 34.615 0.00 0.00 0.00 4.08
5702 6336 7.093322 AGATTCATAATGAGGTCACTTTTGC 57.907 36.000 0.00 0.00 0.00 3.68
5733 6367 9.003658 CACTAGAAATTTGTTTGGTACTCATCT 57.996 33.333 0.00 0.00 0.00 2.90
5734 6368 8.999431 TCACTAGAAATTTGTTTGGTACTCATC 58.001 33.333 0.00 0.00 0.00 2.92
5735 6369 8.918202 TCACTAGAAATTTGTTTGGTACTCAT 57.082 30.769 0.00 0.00 0.00 2.90
5736 6370 8.740123 TTCACTAGAAATTTGTTTGGTACTCA 57.260 30.769 0.00 0.00 0.00 3.41
5737 6371 8.837389 ACTTCACTAGAAATTTGTTTGGTACTC 58.163 33.333 0.00 0.00 32.35 2.59
5738 6372 8.747538 ACTTCACTAGAAATTTGTTTGGTACT 57.252 30.769 0.00 0.00 32.35 2.73
5741 6375 9.349713 TGATACTTCACTAGAAATTTGTTTGGT 57.650 29.630 0.00 0.00 32.35 3.67
5746 6380 9.725019 TGTGATGATACTTCACTAGAAATTTGT 57.275 29.630 15.13 0.00 43.12 2.83
5753 6387 9.166173 CCATTTTTGTGATGATACTTCACTAGA 57.834 33.333 15.13 4.69 43.12 2.43
5754 6388 8.950210 ACCATTTTTGTGATGATACTTCACTAG 58.050 33.333 15.13 0.00 43.12 2.57
5755 6389 8.862325 ACCATTTTTGTGATGATACTTCACTA 57.138 30.769 15.13 8.00 43.12 2.74
5756 6390 7.765695 ACCATTTTTGTGATGATACTTCACT 57.234 32.000 15.13 0.00 43.12 3.41
5759 6393 9.520204 CCATTACCATTTTTGTGATGATACTTC 57.480 33.333 0.00 0.00 33.01 3.01
5760 6394 9.034800 ACCATTACCATTTTTGTGATGATACTT 57.965 29.630 0.00 0.00 33.01 2.24
5761 6395 8.593945 ACCATTACCATTTTTGTGATGATACT 57.406 30.769 0.00 0.00 33.01 2.12
5764 6398 9.034800 ACTTACCATTACCATTTTTGTGATGAT 57.965 29.630 0.00 0.00 33.01 2.45
5765 6399 8.303156 CACTTACCATTACCATTTTTGTGATGA 58.697 33.333 0.00 0.00 33.01 2.92
5766 6400 7.545265 CCACTTACCATTACCATTTTTGTGATG 59.455 37.037 0.00 0.00 31.53 3.07
5767 6401 7.453126 TCCACTTACCATTACCATTTTTGTGAT 59.547 33.333 0.00 0.00 0.00 3.06
5768 6402 6.778069 TCCACTTACCATTACCATTTTTGTGA 59.222 34.615 0.00 0.00 0.00 3.58
5769 6403 6.987386 TCCACTTACCATTACCATTTTTGTG 58.013 36.000 0.00 0.00 0.00 3.33
5770 6404 7.604657 TTCCACTTACCATTACCATTTTTGT 57.395 32.000 0.00 0.00 0.00 2.83
5771 6405 7.602265 CCTTTCCACTTACCATTACCATTTTTG 59.398 37.037 0.00 0.00 0.00 2.44
5772 6406 7.511028 TCCTTTCCACTTACCATTACCATTTTT 59.489 33.333 0.00 0.00 0.00 1.94
5773 6407 7.013834 TCCTTTCCACTTACCATTACCATTTT 58.986 34.615 0.00 0.00 0.00 1.82
5774 6408 6.436218 GTCCTTTCCACTTACCATTACCATTT 59.564 38.462 0.00 0.00 0.00 2.32
5775 6409 5.949952 GTCCTTTCCACTTACCATTACCATT 59.050 40.000 0.00 0.00 0.00 3.16
5776 6410 5.014755 TGTCCTTTCCACTTACCATTACCAT 59.985 40.000 0.00 0.00 0.00 3.55
5777 6411 4.351407 TGTCCTTTCCACTTACCATTACCA 59.649 41.667 0.00 0.00 0.00 3.25
5778 6412 4.913784 TGTCCTTTCCACTTACCATTACC 58.086 43.478 0.00 0.00 0.00 2.85
5779 6413 6.713450 TCTTTGTCCTTTCCACTTACCATTAC 59.287 38.462 0.00 0.00 0.00 1.89
5780 6414 6.713450 GTCTTTGTCCTTTCCACTTACCATTA 59.287 38.462 0.00 0.00 0.00 1.90
5781 6415 5.535030 GTCTTTGTCCTTTCCACTTACCATT 59.465 40.000 0.00 0.00 0.00 3.16
5782 6416 5.070685 GTCTTTGTCCTTTCCACTTACCAT 58.929 41.667 0.00 0.00 0.00 3.55
5783 6417 4.165372 AGTCTTTGTCCTTTCCACTTACCA 59.835 41.667 0.00 0.00 0.00 3.25
5784 6418 4.515567 CAGTCTTTGTCCTTTCCACTTACC 59.484 45.833 0.00 0.00 0.00 2.85
5785 6419 4.023963 GCAGTCTTTGTCCTTTCCACTTAC 60.024 45.833 0.00 0.00 0.00 2.34
5786 6420 4.134563 GCAGTCTTTGTCCTTTCCACTTA 58.865 43.478 0.00 0.00 0.00 2.24
5787 6421 2.952310 GCAGTCTTTGTCCTTTCCACTT 59.048 45.455 0.00 0.00 0.00 3.16
5788 6422 2.092429 TGCAGTCTTTGTCCTTTCCACT 60.092 45.455 0.00 0.00 0.00 4.00
5789 6423 2.033424 GTGCAGTCTTTGTCCTTTCCAC 59.967 50.000 0.00 0.00 0.00 4.02
5790 6424 2.297701 GTGCAGTCTTTGTCCTTTCCA 58.702 47.619 0.00 0.00 0.00 3.53
5791 6425 2.297701 TGTGCAGTCTTTGTCCTTTCC 58.702 47.619 0.00 0.00 0.00 3.13
5792 6426 4.574599 ATTGTGCAGTCTTTGTCCTTTC 57.425 40.909 0.00 0.00 0.00 2.62
5793 6427 4.160252 ACAATTGTGCAGTCTTTGTCCTTT 59.840 37.500 11.07 0.00 0.00 3.11
5794 6428 3.701040 ACAATTGTGCAGTCTTTGTCCTT 59.299 39.130 11.07 0.00 0.00 3.36
5795 6429 3.290710 ACAATTGTGCAGTCTTTGTCCT 58.709 40.909 11.07 0.00 0.00 3.85
5796 6430 3.715628 ACAATTGTGCAGTCTTTGTCC 57.284 42.857 11.07 0.00 0.00 4.02
5797 6431 6.672147 AGATAACAATTGTGCAGTCTTTGTC 58.328 36.000 12.82 1.72 30.62 3.18
5798 6432 6.639632 AGATAACAATTGTGCAGTCTTTGT 57.360 33.333 12.82 0.00 32.19 2.83
5799 6433 8.453320 TCATAGATAACAATTGTGCAGTCTTTG 58.547 33.333 12.82 15.90 0.00 2.77
5800 6434 8.565896 TCATAGATAACAATTGTGCAGTCTTT 57.434 30.769 12.82 6.00 0.00 2.52
5801 6435 8.565896 TTCATAGATAACAATTGTGCAGTCTT 57.434 30.769 12.82 0.00 0.00 3.01
5802 6436 8.565896 TTTCATAGATAACAATTGTGCAGTCT 57.434 30.769 12.82 14.40 0.00 3.24
5803 6437 9.624697 TTTTTCATAGATAACAATTGTGCAGTC 57.375 29.630 12.82 8.08 0.00 3.51
5804 6438 9.410556 GTTTTTCATAGATAACAATTGTGCAGT 57.589 29.630 12.82 0.00 0.00 4.40
5805 6439 9.630098 AGTTTTTCATAGATAACAATTGTGCAG 57.370 29.630 12.82 0.00 0.00 4.41
5806 6440 9.409312 CAGTTTTTCATAGATAACAATTGTGCA 57.591 29.630 12.82 3.58 0.00 4.57
5807 6441 8.863049 CCAGTTTTTCATAGATAACAATTGTGC 58.137 33.333 12.82 5.09 0.00 4.57
5828 6462 8.847196 GGTCTTTGAAATTTAGTAACTCCAGTT 58.153 33.333 0.00 0.00 41.73 3.16
5829 6463 7.996644 TGGTCTTTGAAATTTAGTAACTCCAGT 59.003 33.333 0.00 0.00 0.00 4.00
5830 6464 8.391075 TGGTCTTTGAAATTTAGTAACTCCAG 57.609 34.615 0.00 0.00 0.00 3.86
5831 6465 8.626526 GTTGGTCTTTGAAATTTAGTAACTCCA 58.373 33.333 0.00 0.00 0.00 3.86
5832 6466 7.801783 CGTTGGTCTTTGAAATTTAGTAACTCC 59.198 37.037 0.00 0.00 0.00 3.85
5833 6467 7.801783 CCGTTGGTCTTTGAAATTTAGTAACTC 59.198 37.037 0.00 0.00 0.00 3.01
5834 6468 7.283807 ACCGTTGGTCTTTGAAATTTAGTAACT 59.716 33.333 0.00 0.00 0.00 2.24
5837 6471 6.016943 CCACCGTTGGTCTTTGAAATTTAGTA 60.017 38.462 0.00 0.00 38.23 1.82
5956 6590 5.240623 CACACTTTTCATTACTACCAGCCAA 59.759 40.000 0.00 0.00 0.00 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.