Multiple sequence alignment - TraesCS1B01G200600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G200600 chr1B 100.000 2642 0 0 1 2642 359226621 359223980 0.000000e+00 4879.0
1 TraesCS1B01G200600 chr1D 89.941 2018 119 46 670 2636 253191960 253193944 0.000000e+00 2525.0
2 TraesCS1B01G200600 chr1D 91.156 294 17 5 308 596 253191637 253191926 8.870000e-105 390.0
3 TraesCS1B01G200600 chr1A 92.267 1332 75 15 668 1984 325032096 325033414 0.000000e+00 1864.0
4 TraesCS1B01G200600 chr1A 92.734 289 18 3 2266 2552 325034467 325034754 5.260000e-112 414.0
5 TraesCS1B01G200600 chr1A 92.308 286 14 6 313 593 325031777 325032059 1.470000e-107 399.0
6 TraesCS1B01G200600 chr1A 93.636 220 13 1 2032 2250 325034193 325034412 7.050000e-86 327.0
7 TraesCS1B01G200600 chr6D 93.484 353 20 1 1355 1707 267689453 267689802 3.010000e-144 521.0
8 TraesCS1B01G200600 chr6D 91.367 139 10 2 1222 1360 267549341 267549477 3.470000e-44 189.0
9 TraesCS1B01G200600 chr6B 86.744 347 28 9 958 1301 33632242 33632573 1.160000e-98 370.0
10 TraesCS1B01G200600 chr6B 92.063 126 9 1 1315 1439 33632554 33632679 2.700000e-40 176.0
11 TraesCS1B01G200600 chr6A 100.000 28 0 0 2367 2394 617098436 617098409 5.000000e-03 52.8
12 TraesCS1B01G200600 chr4A 100.000 28 0 0 2367 2394 677992477 677992504 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G200600 chr1B 359223980 359226621 2641 True 4879.0 4879 100.00000 1 2642 1 chr1B.!!$R1 2641
1 TraesCS1B01G200600 chr1D 253191637 253193944 2307 False 1457.5 2525 90.54850 308 2636 2 chr1D.!!$F1 2328
2 TraesCS1B01G200600 chr1A 325031777 325034754 2977 False 751.0 1864 92.73625 313 2552 4 chr1A.!!$F1 2239

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
222 223 0.036306 TCGGACCTTTGAGCCTTTCC 59.964 55.0 0.0 0.0 0.0 3.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1802 1864 0.313987 TCTGTGCTGTGTCCGTGTAG 59.686 55.0 0.0 0.0 0.0 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 9.217278 ACTAGTATCTCTATACATGTACGTTGG 57.783 37.037 7.96 0.00 40.49 3.77
53 54 9.217278 CTAGTATCTCTATACATGTACGTTGGT 57.783 37.037 7.96 0.00 40.49 3.67
54 55 7.872881 AGTATCTCTATACATGTACGTTGGTG 58.127 38.462 7.96 0.00 40.49 4.17
55 56 6.710597 ATCTCTATACATGTACGTTGGTGT 57.289 37.500 7.96 0.00 0.00 4.16
56 57 6.519679 TCTCTATACATGTACGTTGGTGTT 57.480 37.500 7.96 0.00 0.00 3.32
57 58 7.628769 TCTCTATACATGTACGTTGGTGTTA 57.371 36.000 7.96 0.00 0.00 2.41
58 59 8.054152 TCTCTATACATGTACGTTGGTGTTAA 57.946 34.615 7.96 0.00 0.00 2.01
59 60 8.522003 TCTCTATACATGTACGTTGGTGTTAAA 58.478 33.333 7.96 0.00 0.00 1.52
60 61 9.309516 CTCTATACATGTACGTTGGTGTTAAAT 57.690 33.333 7.96 0.00 0.00 1.40
63 64 8.774890 ATACATGTACGTTGGTGTTAAATACA 57.225 30.769 7.96 0.00 0.00 2.29
64 65 7.124347 ACATGTACGTTGGTGTTAAATACAG 57.876 36.000 0.00 0.00 37.45 2.74
65 66 6.707161 ACATGTACGTTGGTGTTAAATACAGT 59.293 34.615 0.00 0.00 37.45 3.55
66 67 6.528014 TGTACGTTGGTGTTAAATACAGTG 57.472 37.500 0.00 0.00 37.45 3.66
67 68 4.477302 ACGTTGGTGTTAAATACAGTGC 57.523 40.909 0.00 0.00 37.45 4.40
68 69 3.878103 ACGTTGGTGTTAAATACAGTGCA 59.122 39.130 0.00 0.00 37.45 4.57
69 70 4.517453 ACGTTGGTGTTAAATACAGTGCAT 59.483 37.500 0.00 0.00 37.45 3.96
70 71 5.009210 ACGTTGGTGTTAAATACAGTGCATT 59.991 36.000 0.00 0.00 37.45 3.56
71 72 5.567534 CGTTGGTGTTAAATACAGTGCATTC 59.432 40.000 0.00 0.00 37.45 2.67
72 73 5.289917 TGGTGTTAAATACAGTGCATTCG 57.710 39.130 0.00 0.00 37.45 3.34
73 74 4.095610 GGTGTTAAATACAGTGCATTCGC 58.904 43.478 0.00 0.00 37.45 4.70
74 75 4.378978 GGTGTTAAATACAGTGCATTCGCA 60.379 41.667 0.00 0.00 41.32 5.10
83 84 3.994729 TGCATTCGCAGCATGTTAC 57.005 47.368 0.00 0.00 45.36 2.50
84 85 1.163554 TGCATTCGCAGCATGTTACA 58.836 45.000 0.00 0.00 45.36 2.41
85 86 1.744522 TGCATTCGCAGCATGTTACAT 59.255 42.857 0.00 0.00 45.36 2.29
86 87 2.114056 GCATTCGCAGCATGTTACATG 58.886 47.619 19.89 19.89 39.31 3.21
87 88 2.114056 CATTCGCAGCATGTTACATGC 58.886 47.619 34.87 34.87 44.85 4.06
88 89 1.163554 TTCGCAGCATGTTACATGCA 58.836 45.000 39.82 23.80 46.77 3.96
89 90 1.381522 TCGCAGCATGTTACATGCAT 58.618 45.000 39.82 26.66 46.77 3.96
90 91 1.064357 TCGCAGCATGTTACATGCATG 59.936 47.619 39.82 33.39 46.77 4.06
91 92 1.202211 CGCAGCATGTTACATGCATGT 60.202 47.619 39.82 33.20 46.77 3.21
92 93 2.031930 CGCAGCATGTTACATGCATGTA 59.968 45.455 39.82 31.03 46.77 2.29
93 94 3.365832 GCAGCATGTTACATGCATGTAC 58.634 45.455 39.82 27.02 46.77 2.90
94 95 3.065786 GCAGCATGTTACATGCATGTACT 59.934 43.478 39.82 24.68 46.77 2.73
95 96 4.439153 GCAGCATGTTACATGCATGTACTT 60.439 41.667 39.82 22.22 46.77 2.24
96 97 5.643664 CAGCATGTTACATGCATGTACTTT 58.356 37.500 39.82 21.59 46.77 2.66
97 98 5.740569 CAGCATGTTACATGCATGTACTTTC 59.259 40.000 39.82 23.73 46.77 2.62
98 99 4.730042 GCATGTTACATGCATGTACTTTCG 59.270 41.667 36.14 22.49 42.48 3.46
99 100 5.447144 GCATGTTACATGCATGTACTTTCGA 60.447 40.000 36.14 18.63 42.48 3.71
100 101 5.778161 TGTTACATGCATGTACTTTCGAG 57.222 39.130 33.74 5.46 42.48 4.04
101 102 5.474825 TGTTACATGCATGTACTTTCGAGA 58.525 37.500 33.74 17.18 42.48 4.04
102 103 6.106003 TGTTACATGCATGTACTTTCGAGAT 58.894 36.000 33.74 10.68 42.48 2.75
103 104 6.593770 TGTTACATGCATGTACTTTCGAGATT 59.406 34.615 33.74 10.49 42.48 2.40
104 105 7.119116 TGTTACATGCATGTACTTTCGAGATTT 59.881 33.333 33.74 10.07 42.48 2.17
105 106 6.500684 ACATGCATGTACTTTCGAGATTTT 57.499 33.333 30.50 0.00 39.68 1.82
106 107 6.913170 ACATGCATGTACTTTCGAGATTTTT 58.087 32.000 30.50 0.00 39.68 1.94
124 125 3.982576 TTTTTCCCGAACTCTTTGCTC 57.017 42.857 0.00 0.00 0.00 4.26
125 126 1.892209 TTTCCCGAACTCTTTGCTCC 58.108 50.000 0.00 0.00 0.00 4.70
126 127 1.056660 TTCCCGAACTCTTTGCTCCT 58.943 50.000 0.00 0.00 0.00 3.69
127 128 1.056660 TCCCGAACTCTTTGCTCCTT 58.943 50.000 0.00 0.00 0.00 3.36
128 129 2.253610 TCCCGAACTCTTTGCTCCTTA 58.746 47.619 0.00 0.00 0.00 2.69
129 130 2.838202 TCCCGAACTCTTTGCTCCTTAT 59.162 45.455 0.00 0.00 0.00 1.73
130 131 3.263425 TCCCGAACTCTTTGCTCCTTATT 59.737 43.478 0.00 0.00 0.00 1.40
131 132 3.623510 CCCGAACTCTTTGCTCCTTATTC 59.376 47.826 0.00 0.00 0.00 1.75
132 133 3.307242 CCGAACTCTTTGCTCCTTATTCG 59.693 47.826 0.00 0.00 37.90 3.34
133 134 4.174009 CGAACTCTTTGCTCCTTATTCGA 58.826 43.478 0.00 0.00 39.94 3.71
134 135 4.625742 CGAACTCTTTGCTCCTTATTCGAA 59.374 41.667 0.00 0.00 39.94 3.71
135 136 5.220303 CGAACTCTTTGCTCCTTATTCGAAG 60.220 44.000 3.35 0.00 39.94 3.79
136 137 5.407407 ACTCTTTGCTCCTTATTCGAAGA 57.593 39.130 3.35 0.00 0.00 2.87
137 138 5.794894 ACTCTTTGCTCCTTATTCGAAGAA 58.205 37.500 4.96 4.96 45.90 2.52
138 139 6.410540 ACTCTTTGCTCCTTATTCGAAGAAT 58.589 36.000 5.56 0.79 45.90 2.40
139 140 7.556844 ACTCTTTGCTCCTTATTCGAAGAATA 58.443 34.615 5.56 0.00 45.90 1.75
140 141 8.041323 ACTCTTTGCTCCTTATTCGAAGAATAA 58.959 33.333 5.56 12.77 45.90 1.40
141 142 8.786826 TCTTTGCTCCTTATTCGAAGAATAAA 57.213 30.769 5.56 3.18 45.90 1.40
142 143 9.226606 TCTTTGCTCCTTATTCGAAGAATAAAA 57.773 29.630 5.56 2.79 45.90 1.52
143 144 9.278734 CTTTGCTCCTTATTCGAAGAATAAAAC 57.721 33.333 5.56 0.00 45.90 2.43
144 145 7.915293 TGCTCCTTATTCGAAGAATAAAACA 57.085 32.000 5.56 0.00 45.90 2.83
145 146 8.330466 TGCTCCTTATTCGAAGAATAAAACAA 57.670 30.769 5.56 0.00 45.90 2.83
146 147 8.234546 TGCTCCTTATTCGAAGAATAAAACAAC 58.765 33.333 5.56 6.19 45.90 3.32
147 148 8.451748 GCTCCTTATTCGAAGAATAAAACAACT 58.548 33.333 5.56 0.00 45.90 3.16
148 149 9.760660 CTCCTTATTCGAAGAATAAAACAACTG 57.239 33.333 5.56 3.86 45.90 3.16
149 150 9.280174 TCCTTATTCGAAGAATAAAACAACTGT 57.720 29.630 5.56 0.00 45.90 3.55
150 151 9.893305 CCTTATTCGAAGAATAAAACAACTGTT 57.107 29.630 5.56 0.00 45.90 3.16
153 154 7.444558 TTCGAAGAATAAAACAACTGTTTGC 57.555 32.000 8.53 0.48 44.64 3.68
154 155 6.791303 TCGAAGAATAAAACAACTGTTTGCT 58.209 32.000 8.53 2.51 46.47 3.91
155 156 6.910433 TCGAAGAATAAAACAACTGTTTGCTC 59.090 34.615 8.53 6.15 46.47 4.26
156 157 6.690957 CGAAGAATAAAACAACTGTTTGCTCA 59.309 34.615 8.53 0.00 46.47 4.26
157 158 7.219917 CGAAGAATAAAACAACTGTTTGCTCAA 59.780 33.333 8.53 0.00 46.47 3.02
158 159 8.947055 AAGAATAAAACAACTGTTTGCTCAAT 57.053 26.923 8.53 0.00 46.47 2.57
159 160 8.579682 AGAATAAAACAACTGTTTGCTCAATC 57.420 30.769 8.53 3.22 46.47 2.67
160 161 7.653311 AGAATAAAACAACTGTTTGCTCAATCC 59.347 33.333 8.53 0.00 46.47 3.01
161 162 4.734398 AAACAACTGTTTGCTCAATCCA 57.266 36.364 7.02 0.00 45.55 3.41
162 163 3.996150 ACAACTGTTTGCTCAATCCAG 57.004 42.857 0.00 7.72 36.00 3.86
163 164 3.290710 ACAACTGTTTGCTCAATCCAGT 58.709 40.909 8.65 8.65 36.00 4.00
164 165 3.316308 ACAACTGTTTGCTCAATCCAGTC 59.684 43.478 12.67 0.00 36.00 3.51
165 166 2.508526 ACTGTTTGCTCAATCCAGTCC 58.491 47.619 8.65 0.00 31.45 3.85
166 167 1.466167 CTGTTTGCTCAATCCAGTCCG 59.534 52.381 0.00 0.00 0.00 4.79
167 168 0.169009 GTTTGCTCAATCCAGTCCGC 59.831 55.000 0.00 0.00 0.00 5.54
168 169 0.036732 TTTGCTCAATCCAGTCCGCT 59.963 50.000 0.00 0.00 0.00 5.52
169 170 0.036732 TTGCTCAATCCAGTCCGCTT 59.963 50.000 0.00 0.00 0.00 4.68
170 171 0.901827 TGCTCAATCCAGTCCGCTTA 59.098 50.000 0.00 0.00 0.00 3.09
171 172 1.486310 TGCTCAATCCAGTCCGCTTAT 59.514 47.619 0.00 0.00 0.00 1.73
172 173 2.092968 TGCTCAATCCAGTCCGCTTATT 60.093 45.455 0.00 0.00 0.00 1.40
173 174 2.289002 GCTCAATCCAGTCCGCTTATTG 59.711 50.000 0.00 0.00 31.60 1.90
174 175 3.797039 CTCAATCCAGTCCGCTTATTGA 58.203 45.455 0.00 0.00 35.23 2.57
175 176 4.191544 CTCAATCCAGTCCGCTTATTGAA 58.808 43.478 0.00 0.00 35.68 2.69
176 177 4.780815 TCAATCCAGTCCGCTTATTGAAT 58.219 39.130 0.00 0.00 34.34 2.57
177 178 4.576053 TCAATCCAGTCCGCTTATTGAATG 59.424 41.667 0.00 0.00 34.34 2.67
178 179 3.904800 TCCAGTCCGCTTATTGAATGA 57.095 42.857 0.00 0.00 0.00 2.57
179 180 4.214986 TCCAGTCCGCTTATTGAATGAA 57.785 40.909 0.00 0.00 0.00 2.57
180 181 4.584874 TCCAGTCCGCTTATTGAATGAAA 58.415 39.130 0.00 0.00 0.00 2.69
181 182 5.192927 TCCAGTCCGCTTATTGAATGAAAT 58.807 37.500 0.00 0.00 0.00 2.17
182 183 5.296780 TCCAGTCCGCTTATTGAATGAAATC 59.703 40.000 0.00 0.00 0.00 2.17
183 184 5.297776 CCAGTCCGCTTATTGAATGAAATCT 59.702 40.000 0.00 0.00 0.00 2.40
184 185 6.183360 CCAGTCCGCTTATTGAATGAAATCTT 60.183 38.462 0.00 0.00 0.00 2.40
185 186 6.690098 CAGTCCGCTTATTGAATGAAATCTTG 59.310 38.462 0.00 0.00 0.00 3.02
186 187 6.599244 AGTCCGCTTATTGAATGAAATCTTGA 59.401 34.615 0.00 0.00 0.00 3.02
187 188 7.284034 AGTCCGCTTATTGAATGAAATCTTGAT 59.716 33.333 0.00 0.00 0.00 2.57
188 189 7.589221 GTCCGCTTATTGAATGAAATCTTGATC 59.411 37.037 0.00 0.00 0.00 2.92
189 190 6.860023 CCGCTTATTGAATGAAATCTTGATCC 59.140 38.462 0.00 0.00 0.00 3.36
190 191 6.576313 CGCTTATTGAATGAAATCTTGATCCG 59.424 38.462 0.00 0.00 0.00 4.18
191 192 7.518848 CGCTTATTGAATGAAATCTTGATCCGA 60.519 37.037 0.00 0.00 0.00 4.55
192 193 8.295288 GCTTATTGAATGAAATCTTGATCCGAT 58.705 33.333 0.00 0.00 0.00 4.18
193 194 9.823098 CTTATTGAATGAAATCTTGATCCGATC 57.177 33.333 1.01 1.01 0.00 3.69
194 195 5.912360 TGAATGAAATCTTGATCCGATCG 57.088 39.130 8.51 8.51 0.00 3.69
195 196 4.212004 TGAATGAAATCTTGATCCGATCGC 59.788 41.667 10.32 0.00 0.00 4.58
196 197 3.459232 TGAAATCTTGATCCGATCGCT 57.541 42.857 10.32 0.00 0.00 4.93
197 198 3.797039 TGAAATCTTGATCCGATCGCTT 58.203 40.909 10.32 0.00 0.00 4.68
198 199 3.804325 TGAAATCTTGATCCGATCGCTTC 59.196 43.478 10.32 9.01 0.00 3.86
199 200 2.447244 ATCTTGATCCGATCGCTTCC 57.553 50.000 10.32 0.00 0.00 3.46
200 201 1.403814 TCTTGATCCGATCGCTTCCT 58.596 50.000 10.32 0.00 0.00 3.36
201 202 1.067669 TCTTGATCCGATCGCTTCCTG 59.932 52.381 10.32 4.44 0.00 3.86
202 203 1.067669 CTTGATCCGATCGCTTCCTGA 59.932 52.381 10.32 0.13 0.00 3.86
203 204 1.332195 TGATCCGATCGCTTCCTGAT 58.668 50.000 10.32 5.77 0.00 2.90
204 205 1.270826 TGATCCGATCGCTTCCTGATC 59.729 52.381 10.32 15.02 39.07 2.92
208 209 3.187211 GATCGCTTCCTGATCGGAC 57.813 57.895 2.08 0.00 42.97 4.79
209 210 0.319125 GATCGCTTCCTGATCGGACC 60.319 60.000 2.08 0.00 42.97 4.46
210 211 0.757188 ATCGCTTCCTGATCGGACCT 60.757 55.000 2.08 0.00 42.97 3.85
211 212 0.970937 TCGCTTCCTGATCGGACCTT 60.971 55.000 2.08 0.00 42.97 3.50
212 213 0.108138 CGCTTCCTGATCGGACCTTT 60.108 55.000 2.08 0.00 42.97 3.11
213 214 1.373570 GCTTCCTGATCGGACCTTTG 58.626 55.000 2.08 0.00 42.97 2.77
214 215 1.066143 GCTTCCTGATCGGACCTTTGA 60.066 52.381 2.08 0.00 42.97 2.69
215 216 2.898705 CTTCCTGATCGGACCTTTGAG 58.101 52.381 2.08 0.00 42.97 3.02
216 217 0.537188 TCCTGATCGGACCTTTGAGC 59.463 55.000 2.08 0.00 36.69 4.26
217 218 0.462759 CCTGATCGGACCTTTGAGCC 60.463 60.000 2.08 0.00 33.16 4.70
218 219 0.539051 CTGATCGGACCTTTGAGCCT 59.461 55.000 0.00 0.00 0.00 4.58
219 220 0.984230 TGATCGGACCTTTGAGCCTT 59.016 50.000 0.00 0.00 0.00 4.35
220 221 1.351017 TGATCGGACCTTTGAGCCTTT 59.649 47.619 0.00 0.00 0.00 3.11
221 222 2.010497 GATCGGACCTTTGAGCCTTTC 58.990 52.381 0.00 0.00 0.00 2.62
222 223 0.036306 TCGGACCTTTGAGCCTTTCC 59.964 55.000 0.00 0.00 0.00 3.13
223 224 0.960861 CGGACCTTTGAGCCTTTCCC 60.961 60.000 0.00 0.00 0.00 3.97
224 225 0.112412 GGACCTTTGAGCCTTTCCCA 59.888 55.000 0.00 0.00 0.00 4.37
225 226 1.248486 GACCTTTGAGCCTTTCCCAC 58.752 55.000 0.00 0.00 0.00 4.61
226 227 0.178961 ACCTTTGAGCCTTTCCCACC 60.179 55.000 0.00 0.00 0.00 4.61
227 228 0.113190 CCTTTGAGCCTTTCCCACCT 59.887 55.000 0.00 0.00 0.00 4.00
228 229 1.251251 CTTTGAGCCTTTCCCACCTG 58.749 55.000 0.00 0.00 0.00 4.00
229 230 0.178964 TTTGAGCCTTTCCCACCTGG 60.179 55.000 0.00 0.00 0.00 4.45
230 231 2.361737 GAGCCTTTCCCACCTGGC 60.362 66.667 0.00 0.00 45.21 4.85
231 232 3.946126 GAGCCTTTCCCACCTGGCC 62.946 68.421 0.00 0.00 45.94 5.36
233 234 3.589542 CCTTTCCCACCTGGCCCA 61.590 66.667 0.00 0.00 0.00 5.36
234 235 2.283173 CTTTCCCACCTGGCCCAC 60.283 66.667 0.00 0.00 0.00 4.61
235 236 2.780924 TTTCCCACCTGGCCCACT 60.781 61.111 0.00 0.00 0.00 4.00
236 237 3.145473 TTTCCCACCTGGCCCACTG 62.145 63.158 0.00 0.00 0.00 3.66
242 243 4.335647 CCTGGCCCACTGCGACTT 62.336 66.667 0.00 0.00 42.61 3.01
243 244 2.662596 CTGGCCCACTGCGACTTA 59.337 61.111 0.00 0.00 42.61 2.24
244 245 1.003839 CTGGCCCACTGCGACTTAA 60.004 57.895 0.00 0.00 42.61 1.85
245 246 0.392998 CTGGCCCACTGCGACTTAAT 60.393 55.000 0.00 0.00 42.61 1.40
246 247 0.392461 TGGCCCACTGCGACTTAATC 60.392 55.000 0.00 0.00 42.61 1.75
247 248 1.095807 GGCCCACTGCGACTTAATCC 61.096 60.000 0.00 0.00 42.61 3.01
248 249 1.429148 GCCCACTGCGACTTAATCCG 61.429 60.000 0.00 0.00 0.00 4.18
266 267 4.742201 CACCGGTCCCAGCTGTCG 62.742 72.222 13.81 10.54 0.00 4.35
278 279 3.049674 CTGTCGGCGTGCCACATT 61.050 61.111 12.06 0.00 35.37 2.71
279 280 3.313007 CTGTCGGCGTGCCACATTG 62.313 63.158 12.06 0.99 35.37 2.82
280 281 4.759096 GTCGGCGTGCCACATTGC 62.759 66.667 12.06 0.00 35.37 3.56
282 283 4.764336 CGGCGTGCCACATTGCAG 62.764 66.667 12.06 0.00 43.02 4.41
284 285 4.047059 GCGTGCCACATTGCAGCT 62.047 61.111 0.00 0.00 43.02 4.24
285 286 2.689785 GCGTGCCACATTGCAGCTA 61.690 57.895 0.00 0.00 43.02 3.32
286 287 1.996786 GCGTGCCACATTGCAGCTAT 61.997 55.000 0.00 0.00 43.02 2.97
287 288 0.248336 CGTGCCACATTGCAGCTATG 60.248 55.000 14.48 14.48 43.02 2.23
288 289 0.101759 GTGCCACATTGCAGCTATGG 59.898 55.000 19.29 10.31 43.02 2.74
289 290 0.323633 TGCCACATTGCAGCTATGGT 60.324 50.000 19.29 4.38 36.04 3.55
290 291 0.819582 GCCACATTGCAGCTATGGTT 59.180 50.000 19.29 0.00 32.71 3.67
291 292 1.202336 GCCACATTGCAGCTATGGTTC 60.202 52.381 19.29 5.52 32.71 3.62
292 293 2.372264 CCACATTGCAGCTATGGTTCT 58.628 47.619 19.29 0.00 0.00 3.01
293 294 2.357009 CCACATTGCAGCTATGGTTCTC 59.643 50.000 19.29 0.00 0.00 2.87
294 295 2.357009 CACATTGCAGCTATGGTTCTCC 59.643 50.000 19.29 0.00 0.00 3.71
295 296 1.952296 CATTGCAGCTATGGTTCTCCC 59.048 52.381 8.82 0.00 0.00 4.30
303 304 2.935481 TGGTTCTCCCAGGGCCAG 60.935 66.667 6.18 0.00 38.72 4.85
304 305 2.610859 GGTTCTCCCAGGGCCAGA 60.611 66.667 6.18 0.00 0.00 3.86
305 306 2.003548 GGTTCTCCCAGGGCCAGAT 61.004 63.158 6.18 0.00 0.00 2.90
306 307 1.529309 GTTCTCCCAGGGCCAGATC 59.471 63.158 6.18 0.00 0.00 2.75
315 316 3.797353 GGCCAGATCCCTTCGCCA 61.797 66.667 0.00 0.00 36.01 5.69
423 426 1.003355 GCTAGACAGGCACAGGCAA 60.003 57.895 0.00 0.00 43.71 4.52
424 427 0.606401 GCTAGACAGGCACAGGCAAA 60.606 55.000 0.00 0.00 43.71 3.68
596 605 2.049063 ACCTGAAGAGACGCACGC 60.049 61.111 0.00 0.00 0.00 5.34
598 607 2.375766 CCTGAAGAGACGCACGCAC 61.376 63.158 0.00 0.00 0.00 5.34
599 608 1.661509 CTGAAGAGACGCACGCACA 60.662 57.895 0.00 0.00 0.00 4.57
603 612 2.899345 AAGAGACGCACGCACACACA 62.899 55.000 0.00 0.00 0.00 3.72
605 614 4.627114 GACGCACGCACACACACG 62.627 66.667 0.00 0.00 0.00 4.49
608 617 2.861701 CGCACGCACACACACGTAA 61.862 57.895 0.00 0.00 41.32 3.18
609 618 1.348938 GCACGCACACACACGTAAA 59.651 52.632 0.00 0.00 41.32 2.01
611 620 0.315544 CACGCACACACACGTAAACC 60.316 55.000 0.00 0.00 41.32 3.27
612 621 1.277440 CGCACACACACGTAAACCC 59.723 57.895 0.00 0.00 0.00 4.11
613 622 1.429927 CGCACACACACGTAAACCCA 61.430 55.000 0.00 0.00 0.00 4.51
615 624 0.306533 CACACACACGTAAACCCAGC 59.693 55.000 0.00 0.00 0.00 4.85
616 625 1.155424 ACACACACGTAAACCCAGCG 61.155 55.000 0.00 0.00 0.00 5.18
617 626 1.595929 ACACACGTAAACCCAGCGG 60.596 57.895 0.00 0.00 0.00 5.52
618 627 2.667199 ACACGTAAACCCAGCGGC 60.667 61.111 0.00 0.00 0.00 6.53
619 628 3.428282 CACGTAAACCCAGCGGCC 61.428 66.667 0.00 0.00 0.00 6.13
621 630 4.745751 CGTAAACCCAGCGGCCGA 62.746 66.667 33.48 0.69 0.00 5.54
622 631 2.124860 GTAAACCCAGCGGCCGAT 60.125 61.111 33.48 23.90 0.00 4.18
623 632 2.178235 GTAAACCCAGCGGCCGATC 61.178 63.158 33.48 12.91 0.00 3.69
624 633 3.726595 TAAACCCAGCGGCCGATCG 62.727 63.158 33.48 17.28 0.00 3.69
654 663 3.674138 GCAAGTTGCAGAGAGAGAGAGAG 60.674 52.174 22.90 0.00 44.26 3.20
655 664 3.719268 AGTTGCAGAGAGAGAGAGAGA 57.281 47.619 0.00 0.00 0.00 3.10
657 666 3.264193 AGTTGCAGAGAGAGAGAGAGAGA 59.736 47.826 0.00 0.00 0.00 3.10
658 667 3.548745 TGCAGAGAGAGAGAGAGAGAG 57.451 52.381 0.00 0.00 0.00 3.20
659 668 3.106827 TGCAGAGAGAGAGAGAGAGAGA 58.893 50.000 0.00 0.00 0.00 3.10
660 669 3.133542 TGCAGAGAGAGAGAGAGAGAGAG 59.866 52.174 0.00 0.00 0.00 3.20
661 670 3.386078 GCAGAGAGAGAGAGAGAGAGAGA 59.614 52.174 0.00 0.00 0.00 3.10
662 671 4.501229 GCAGAGAGAGAGAGAGAGAGAGAG 60.501 54.167 0.00 0.00 0.00 3.20
663 672 4.039004 CAGAGAGAGAGAGAGAGAGAGAGG 59.961 54.167 0.00 0.00 0.00 3.69
664 673 3.312890 AGAGAGAGAGAGAGAGAGAGGG 58.687 54.545 0.00 0.00 0.00 4.30
665 674 3.051803 AGAGAGAGAGAGAGAGAGAGGGA 60.052 52.174 0.00 0.00 0.00 4.20
666 675 3.312890 AGAGAGAGAGAGAGAGAGGGAG 58.687 54.545 0.00 0.00 0.00 4.30
667 676 3.051803 AGAGAGAGAGAGAGAGAGGGAGA 60.052 52.174 0.00 0.00 0.00 3.71
668 677 3.312890 AGAGAGAGAGAGAGAGGGAGAG 58.687 54.545 0.00 0.00 0.00 3.20
669 678 3.051803 AGAGAGAGAGAGAGAGGGAGAGA 60.052 52.174 0.00 0.00 0.00 3.10
670 679 3.312890 AGAGAGAGAGAGAGGGAGAGAG 58.687 54.545 0.00 0.00 0.00 3.20
671 680 3.051803 AGAGAGAGAGAGAGGGAGAGAGA 60.052 52.174 0.00 0.00 0.00 3.10
672 681 3.312890 AGAGAGAGAGAGGGAGAGAGAG 58.687 54.545 0.00 0.00 0.00 3.20
673 682 3.051803 AGAGAGAGAGAGGGAGAGAGAGA 60.052 52.174 0.00 0.00 0.00 3.10
674 683 3.312890 AGAGAGAGAGGGAGAGAGAGAG 58.687 54.545 0.00 0.00 0.00 3.20
675 684 3.051803 AGAGAGAGAGGGAGAGAGAGAGA 60.052 52.174 0.00 0.00 0.00 3.10
676 685 3.312890 AGAGAGAGGGAGAGAGAGAGAG 58.687 54.545 0.00 0.00 0.00 3.20
677 686 3.051803 AGAGAGAGGGAGAGAGAGAGAGA 60.052 52.174 0.00 0.00 0.00 3.10
678 687 3.312890 AGAGAGGGAGAGAGAGAGAGAG 58.687 54.545 0.00 0.00 0.00 3.20
679 688 3.051803 AGAGAGGGAGAGAGAGAGAGAGA 60.052 52.174 0.00 0.00 0.00 3.10
680 689 3.312890 AGAGGGAGAGAGAGAGAGAGAG 58.687 54.545 0.00 0.00 0.00 3.20
681 690 3.051803 AGAGGGAGAGAGAGAGAGAGAGA 60.052 52.174 0.00 0.00 0.00 3.10
682 691 3.312890 AGGGAGAGAGAGAGAGAGAGAG 58.687 54.545 0.00 0.00 0.00 3.20
683 692 3.051803 AGGGAGAGAGAGAGAGAGAGAGA 60.052 52.174 0.00 0.00 0.00 3.10
684 693 3.906846 GGGAGAGAGAGAGAGAGAGAGAT 59.093 52.174 0.00 0.00 0.00 2.75
685 694 4.262808 GGGAGAGAGAGAGAGAGAGAGATG 60.263 54.167 0.00 0.00 0.00 2.90
755 766 2.261361 CCATGAGCCACGTCGTCA 59.739 61.111 0.00 0.00 0.00 4.35
760 771 0.249699 TGAGCCACGTCGTCACAATT 60.250 50.000 0.00 0.00 0.00 2.32
765 776 1.127951 CCACGTCGTCACAATTAAGCC 59.872 52.381 0.00 0.00 0.00 4.35
770 781 1.094785 CGTCACAATTAAGCCCTGGG 58.905 55.000 8.86 8.86 0.00 4.45
788 799 2.203252 CCACGGATGGGATGGCAG 60.203 66.667 0.00 0.00 43.04 4.85
789 800 2.203252 CACGGATGGGATGGCAGG 60.203 66.667 0.00 0.00 0.00 4.85
799 810 0.966875 GGATGGCAGGCATGTGAACA 60.967 55.000 15.52 0.00 0.00 3.18
904 923 1.337447 CCCGCACTATATAACCCCACG 60.337 57.143 0.00 0.00 0.00 4.94
975 999 2.277247 CGTTGCCGCATTTAGCCG 60.277 61.111 0.00 0.00 41.38 5.52
1513 1553 1.203038 ACATGTGCATGGAAGGGTTCA 60.203 47.619 15.52 0.00 42.91 3.18
1656 1696 1.086696 CATAGCCGCCGGGAAATATG 58.913 55.000 4.77 0.00 34.06 1.78
1672 1714 1.908344 TATGCATGCCTTGTGTGTGT 58.092 45.000 16.68 0.00 0.00 3.72
1685 1727 2.139118 GTGTGTGTGCTTCTTCTCCTC 58.861 52.381 0.00 0.00 0.00 3.71
1720 1764 1.929836 CCATGTGCTAGAAGCTCGAAC 59.070 52.381 0.00 0.00 42.97 3.95
1802 1864 4.453478 TCGTCATGGTAGTATGATCGTACC 59.547 45.833 19.37 9.56 39.13 3.34
1803 1865 4.454847 CGTCATGGTAGTATGATCGTACCT 59.545 45.833 19.37 10.68 39.13 3.08
1810 1872 4.077300 AGTATGATCGTACCTACACGGA 57.923 45.455 19.37 0.00 42.19 4.69
1854 1916 2.640302 ATCTGCGTGCTCGTCCTGT 61.640 57.895 10.18 0.00 39.49 4.00
1855 1917 2.159819 ATCTGCGTGCTCGTCCTGTT 62.160 55.000 10.18 0.00 39.49 3.16
2030 2570 8.767085 TGCATTGAAAAATTCTGAAAAGATCAC 58.233 29.630 0.00 0.00 33.47 3.06
2058 2854 8.035165 ACATATGTATTAGTTTGAAACGTGCA 57.965 30.769 6.56 3.82 36.23 4.57
2107 2904 4.514066 ACTGTTTGCGACCTAGGTAAAAAG 59.486 41.667 16.29 17.78 32.56 2.27
2256 3053 8.045176 ACTAAATGAGGTAGAGAATTTTGTGC 57.955 34.615 0.00 0.00 30.47 4.57
2257 3054 6.899393 AAATGAGGTAGAGAATTTTGTGCA 57.101 33.333 0.00 0.00 0.00 4.57
2260 3057 8.579850 AATGAGGTAGAGAATTTTGTGCATTA 57.420 30.769 0.00 0.00 0.00 1.90
2261 3058 7.994425 TGAGGTAGAGAATTTTGTGCATTAA 57.006 32.000 0.00 0.00 0.00 1.40
2262 3059 8.044060 TGAGGTAGAGAATTTTGTGCATTAAG 57.956 34.615 0.00 0.00 0.00 1.85
2301 3138 6.533819 TTACATGTGTAAGTTTTGACTCGG 57.466 37.500 9.11 0.00 35.75 4.63
2324 3161 8.609176 TCGGTACTTATGTGCATTATTCTTTTC 58.391 33.333 0.00 0.00 0.00 2.29
2325 3162 8.394877 CGGTACTTATGTGCATTATTCTTTTCA 58.605 33.333 0.00 0.00 0.00 2.69
2418 3258 8.881109 AAGTTATTTCCTAAAGGGGGAGTATA 57.119 34.615 0.00 0.00 34.06 1.47
2426 3266 6.912561 TCCTAAAGGGGGAGTATATCTTTTGT 59.087 38.462 0.00 0.00 35.41 2.83
2487 3327 8.842280 ACCGACAACAAAGATCTAAAATAAACA 58.158 29.630 0.00 0.00 0.00 2.83
2576 3420 2.414161 GCGGTGCCTCTTATGACAAAAC 60.414 50.000 0.00 0.00 0.00 2.43
2579 3423 3.366374 GGTGCCTCTTATGACAAAACTGC 60.366 47.826 0.00 0.00 0.00 4.40
2609 3453 8.395605 AGACCAAACCTAAATAAGATGGGTTAA 58.604 33.333 0.00 0.00 39.05 2.01
2610 3454 8.357290 ACCAAACCTAAATAAGATGGGTTAAC 57.643 34.615 0.00 0.00 39.05 2.01
2623 3467 7.703058 AGATGGGTTAACCTCATAGTTTTTG 57.297 36.000 23.69 0.00 41.11 2.44
2636 3480 2.229792 AGTTTTTGAAGAGGCGCATGA 58.770 42.857 10.83 0.00 0.00 3.07
2637 3481 2.821969 AGTTTTTGAAGAGGCGCATGAT 59.178 40.909 10.83 0.00 0.00 2.45
2638 3482 3.256631 AGTTTTTGAAGAGGCGCATGATT 59.743 39.130 10.83 0.00 0.00 2.57
2639 3483 3.492421 TTTTGAAGAGGCGCATGATTC 57.508 42.857 10.83 9.74 0.00 2.52
2640 3484 1.009078 TTGAAGAGGCGCATGATTCG 58.991 50.000 10.83 0.00 0.00 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.181061 AGTATTAATTACTTGGTTTTATGCCGT 57.819 29.630 0.00 0.00 37.96 5.68
26 27 9.217278 CCAACGTACATGTATAGAGATACTAGT 57.783 37.037 9.18 0.00 39.04 2.57
27 28 9.217278 ACCAACGTACATGTATAGAGATACTAG 57.783 37.037 9.18 0.00 39.04 2.57
28 29 8.996271 CACCAACGTACATGTATAGAGATACTA 58.004 37.037 9.18 0.00 39.04 1.82
29 30 7.501559 ACACCAACGTACATGTATAGAGATACT 59.498 37.037 9.18 0.00 39.04 2.12
30 31 7.646314 ACACCAACGTACATGTATAGAGATAC 58.354 38.462 9.18 0.00 38.79 2.24
31 32 7.812690 ACACCAACGTACATGTATAGAGATA 57.187 36.000 9.18 0.00 0.00 1.98
32 33 6.710597 ACACCAACGTACATGTATAGAGAT 57.289 37.500 9.18 0.00 0.00 2.75
33 34 6.519679 AACACCAACGTACATGTATAGAGA 57.480 37.500 9.18 0.00 0.00 3.10
34 35 8.692110 TTTAACACCAACGTACATGTATAGAG 57.308 34.615 9.18 4.20 0.00 2.43
37 38 9.866798 TGTATTTAACACCAACGTACATGTATA 57.133 29.630 9.18 0.00 31.43 1.47
38 39 8.774890 TGTATTTAACACCAACGTACATGTAT 57.225 30.769 9.18 0.00 31.43 2.29
39 40 7.871973 ACTGTATTTAACACCAACGTACATGTA 59.128 33.333 0.08 0.08 33.45 2.29
40 41 6.707161 ACTGTATTTAACACCAACGTACATGT 59.293 34.615 2.69 2.69 33.45 3.21
41 42 7.012943 CACTGTATTTAACACCAACGTACATG 58.987 38.462 0.00 0.00 33.45 3.21
42 43 6.347888 GCACTGTATTTAACACCAACGTACAT 60.348 38.462 0.00 0.00 33.45 2.29
43 44 5.050227 GCACTGTATTTAACACCAACGTACA 60.050 40.000 0.00 0.00 33.45 2.90
44 45 5.050227 TGCACTGTATTTAACACCAACGTAC 60.050 40.000 0.00 0.00 33.45 3.67
45 46 5.055144 TGCACTGTATTTAACACCAACGTA 58.945 37.500 0.00 0.00 33.45 3.57
46 47 3.878103 TGCACTGTATTTAACACCAACGT 59.122 39.130 0.00 0.00 33.45 3.99
47 48 4.475763 TGCACTGTATTTAACACCAACG 57.524 40.909 0.00 0.00 33.45 4.10
48 49 5.567534 CGAATGCACTGTATTTAACACCAAC 59.432 40.000 0.00 0.00 33.45 3.77
49 50 5.694816 CGAATGCACTGTATTTAACACCAA 58.305 37.500 0.00 0.00 33.45 3.67
50 51 4.378978 GCGAATGCACTGTATTTAACACCA 60.379 41.667 0.00 0.00 42.15 4.17
51 52 4.095610 GCGAATGCACTGTATTTAACACC 58.904 43.478 0.00 0.00 42.15 4.16
66 67 2.114056 CATGTAACATGCTGCGAATGC 58.886 47.619 0.00 0.00 43.20 3.56
67 68 2.114056 GCATGTAACATGCTGCGAATG 58.886 47.619 17.63 0.00 41.52 2.67
68 69 1.744522 TGCATGTAACATGCTGCGAAT 59.255 42.857 22.31 0.00 44.79 3.34
69 70 1.163554 TGCATGTAACATGCTGCGAA 58.836 45.000 22.31 7.21 44.79 4.70
70 71 1.064357 CATGCATGTAACATGCTGCGA 59.936 47.619 18.91 9.64 44.79 5.10
71 72 1.472990 CATGCATGTAACATGCTGCG 58.527 50.000 18.91 12.21 44.79 5.18
77 78 6.106003 TCTCGAAAGTACATGCATGTAACAT 58.894 36.000 34.93 24.45 44.11 2.71
78 79 5.474825 TCTCGAAAGTACATGCATGTAACA 58.525 37.500 34.93 17.85 44.11 2.41
79 80 6.589830 ATCTCGAAAGTACATGCATGTAAC 57.410 37.500 34.93 27.41 44.11 2.50
80 81 7.609760 AAATCTCGAAAGTACATGCATGTAA 57.390 32.000 34.93 20.42 44.11 2.41
81 82 7.609760 AAAATCTCGAAAGTACATGCATGTA 57.390 32.000 31.03 31.03 41.97 2.29
82 83 6.500684 AAAATCTCGAAAGTACATGCATGT 57.499 33.333 33.20 33.20 44.48 3.21
104 105 2.621526 GGAGCAAAGAGTTCGGGAAAAA 59.378 45.455 0.00 0.00 0.00 1.94
105 106 2.158667 AGGAGCAAAGAGTTCGGGAAAA 60.159 45.455 0.00 0.00 0.00 2.29
106 107 1.420138 AGGAGCAAAGAGTTCGGGAAA 59.580 47.619 0.00 0.00 0.00 3.13
107 108 1.056660 AGGAGCAAAGAGTTCGGGAA 58.943 50.000 0.00 0.00 0.00 3.97
108 109 1.056660 AAGGAGCAAAGAGTTCGGGA 58.943 50.000 0.00 0.00 0.00 5.14
109 110 2.762535 TAAGGAGCAAAGAGTTCGGG 57.237 50.000 0.00 0.00 0.00 5.14
110 111 3.307242 CGAATAAGGAGCAAAGAGTTCGG 59.693 47.826 0.00 0.00 35.07 4.30
111 112 4.174009 TCGAATAAGGAGCAAAGAGTTCG 58.826 43.478 0.00 0.00 38.69 3.95
112 113 5.869888 TCTTCGAATAAGGAGCAAAGAGTTC 59.130 40.000 0.00 0.00 0.00 3.01
113 114 5.794894 TCTTCGAATAAGGAGCAAAGAGTT 58.205 37.500 0.00 0.00 0.00 3.01
114 115 5.407407 TCTTCGAATAAGGAGCAAAGAGT 57.593 39.130 0.00 0.00 0.00 3.24
115 116 6.917217 ATTCTTCGAATAAGGAGCAAAGAG 57.083 37.500 0.00 0.00 0.00 2.85
116 117 8.786826 TTTATTCTTCGAATAAGGAGCAAAGA 57.213 30.769 0.00 0.00 0.00 2.52
117 118 9.278734 GTTTTATTCTTCGAATAAGGAGCAAAG 57.721 33.333 0.00 0.00 0.00 2.77
118 119 8.788806 TGTTTTATTCTTCGAATAAGGAGCAAA 58.211 29.630 0.00 0.00 0.00 3.68
119 120 8.330466 TGTTTTATTCTTCGAATAAGGAGCAA 57.670 30.769 0.00 0.08 0.00 3.91
120 121 7.915293 TGTTTTATTCTTCGAATAAGGAGCA 57.085 32.000 0.00 2.85 0.00 4.26
121 122 8.451748 AGTTGTTTTATTCTTCGAATAAGGAGC 58.548 33.333 0.00 0.83 0.00 4.70
122 123 9.760660 CAGTTGTTTTATTCTTCGAATAAGGAG 57.239 33.333 0.00 0.00 0.00 3.69
123 124 9.280174 ACAGTTGTTTTATTCTTCGAATAAGGA 57.720 29.630 0.00 0.00 0.00 3.36
124 125 9.893305 AACAGTTGTTTTATTCTTCGAATAAGG 57.107 29.630 0.00 0.00 33.93 2.69
127 128 9.176181 GCAAACAGTTGTTTTATTCTTCGAATA 57.824 29.630 7.48 0.00 45.07 1.75
128 129 7.920682 AGCAAACAGTTGTTTTATTCTTCGAAT 59.079 29.630 7.48 0.00 45.07 3.34
129 130 7.254852 AGCAAACAGTTGTTTTATTCTTCGAA 58.745 30.769 7.48 0.00 45.07 3.71
130 131 6.791303 AGCAAACAGTTGTTTTATTCTTCGA 58.209 32.000 7.48 0.00 45.07 3.71
131 132 6.690957 TGAGCAAACAGTTGTTTTATTCTTCG 59.309 34.615 7.48 0.00 45.07 3.79
132 133 7.985634 TGAGCAAACAGTTGTTTTATTCTTC 57.014 32.000 7.48 1.85 45.07 2.87
133 134 8.947055 ATTGAGCAAACAGTTGTTTTATTCTT 57.053 26.923 7.48 0.00 45.07 2.52
134 135 7.653311 GGATTGAGCAAACAGTTGTTTTATTCT 59.347 33.333 7.48 3.66 45.07 2.40
135 136 7.437862 TGGATTGAGCAAACAGTTGTTTTATTC 59.562 33.333 7.48 6.70 45.07 1.75
136 137 7.271511 TGGATTGAGCAAACAGTTGTTTTATT 58.728 30.769 7.48 0.00 45.07 1.40
137 138 6.815089 TGGATTGAGCAAACAGTTGTTTTAT 58.185 32.000 7.48 0.11 45.07 1.40
138 139 6.127479 ACTGGATTGAGCAAACAGTTGTTTTA 60.127 34.615 14.29 0.00 45.07 1.52
139 140 5.083533 TGGATTGAGCAAACAGTTGTTTT 57.916 34.783 7.48 0.00 45.07 2.43
141 142 3.701040 ACTGGATTGAGCAAACAGTTGTT 59.299 39.130 14.29 0.00 38.53 2.83
142 143 3.290710 ACTGGATTGAGCAAACAGTTGT 58.709 40.909 14.29 0.00 38.53 3.32
143 144 3.304928 GGACTGGATTGAGCAAACAGTTG 60.305 47.826 18.48 0.00 40.33 3.16
144 145 2.887152 GGACTGGATTGAGCAAACAGTT 59.113 45.455 18.48 8.25 40.33 3.16
145 146 2.508526 GGACTGGATTGAGCAAACAGT 58.491 47.619 17.88 17.88 41.79 3.55
146 147 1.466167 CGGACTGGATTGAGCAAACAG 59.534 52.381 13.34 13.34 36.26 3.16
147 148 1.522668 CGGACTGGATTGAGCAAACA 58.477 50.000 0.00 0.00 0.00 2.83
148 149 0.169009 GCGGACTGGATTGAGCAAAC 59.831 55.000 0.00 0.00 0.00 2.93
149 150 0.036732 AGCGGACTGGATTGAGCAAA 59.963 50.000 0.00 0.00 0.00 3.68
150 151 0.036732 AAGCGGACTGGATTGAGCAA 59.963 50.000 0.00 0.00 0.00 3.91
151 152 0.901827 TAAGCGGACTGGATTGAGCA 59.098 50.000 0.00 0.00 0.00 4.26
152 153 2.246719 ATAAGCGGACTGGATTGAGC 57.753 50.000 0.00 0.00 0.00 4.26
153 154 3.797039 TCAATAAGCGGACTGGATTGAG 58.203 45.455 0.00 0.00 35.60 3.02
154 155 3.904800 TCAATAAGCGGACTGGATTGA 57.095 42.857 0.00 0.00 37.01 2.57
155 156 4.576053 TCATTCAATAAGCGGACTGGATTG 59.424 41.667 0.00 0.00 33.95 2.67
156 157 4.780815 TCATTCAATAAGCGGACTGGATT 58.219 39.130 0.00 0.00 0.00 3.01
157 158 4.422073 TCATTCAATAAGCGGACTGGAT 57.578 40.909 0.00 0.00 0.00 3.41
158 159 3.904800 TCATTCAATAAGCGGACTGGA 57.095 42.857 0.00 0.00 0.00 3.86
159 160 4.963276 TTTCATTCAATAAGCGGACTGG 57.037 40.909 0.00 0.00 0.00 4.00
160 161 6.369059 AGATTTCATTCAATAAGCGGACTG 57.631 37.500 0.00 0.00 0.00 3.51
161 162 6.599244 TCAAGATTTCATTCAATAAGCGGACT 59.401 34.615 0.00 0.00 0.00 3.85
162 163 6.785191 TCAAGATTTCATTCAATAAGCGGAC 58.215 36.000 0.00 0.00 0.00 4.79
163 164 7.255242 GGATCAAGATTTCATTCAATAAGCGGA 60.255 37.037 0.00 0.00 0.00 5.54
164 165 6.860023 GGATCAAGATTTCATTCAATAAGCGG 59.140 38.462 0.00 0.00 0.00 5.52
165 166 6.576313 CGGATCAAGATTTCATTCAATAAGCG 59.424 38.462 0.00 0.00 0.00 4.68
166 167 7.642669 TCGGATCAAGATTTCATTCAATAAGC 58.357 34.615 0.00 0.00 0.00 3.09
167 168 9.823098 GATCGGATCAAGATTTCATTCAATAAG 57.177 33.333 13.02 0.00 0.00 1.73
168 169 8.498358 CGATCGGATCAAGATTTCATTCAATAA 58.502 33.333 17.53 0.00 0.00 1.40
169 170 7.360353 GCGATCGGATCAAGATTTCATTCAATA 60.360 37.037 18.30 0.00 0.00 1.90
170 171 6.567321 GCGATCGGATCAAGATTTCATTCAAT 60.567 38.462 18.30 0.00 0.00 2.57
171 172 5.277490 GCGATCGGATCAAGATTTCATTCAA 60.277 40.000 18.30 0.00 0.00 2.69
172 173 4.212004 GCGATCGGATCAAGATTTCATTCA 59.788 41.667 18.30 0.00 0.00 2.57
173 174 4.450419 AGCGATCGGATCAAGATTTCATTC 59.550 41.667 18.30 0.00 0.00 2.67
174 175 4.384056 AGCGATCGGATCAAGATTTCATT 58.616 39.130 18.30 0.00 0.00 2.57
175 176 4.000331 AGCGATCGGATCAAGATTTCAT 58.000 40.909 18.30 0.00 0.00 2.57
176 177 3.459232 AGCGATCGGATCAAGATTTCA 57.541 42.857 18.30 0.00 0.00 2.69
177 178 3.185391 GGAAGCGATCGGATCAAGATTTC 59.815 47.826 18.30 11.68 0.00 2.17
178 179 3.134458 GGAAGCGATCGGATCAAGATTT 58.866 45.455 18.30 4.43 0.00 2.17
179 180 2.366916 AGGAAGCGATCGGATCAAGATT 59.633 45.455 18.30 7.35 0.00 2.40
180 181 1.967066 AGGAAGCGATCGGATCAAGAT 59.033 47.619 18.30 3.00 0.00 2.40
181 182 1.067669 CAGGAAGCGATCGGATCAAGA 59.932 52.381 18.30 0.00 0.00 3.02
182 183 1.067669 TCAGGAAGCGATCGGATCAAG 59.932 52.381 18.30 3.92 0.00 3.02
183 184 1.111277 TCAGGAAGCGATCGGATCAA 58.889 50.000 18.30 0.00 0.00 2.57
184 185 1.270826 GATCAGGAAGCGATCGGATCA 59.729 52.381 18.30 0.00 38.46 2.92
185 186 1.989430 GATCAGGAAGCGATCGGATC 58.011 55.000 18.30 14.55 34.48 3.36
198 199 0.462759 GGCTCAAAGGTCCGATCAGG 60.463 60.000 0.00 0.00 42.97 3.86
199 200 0.539051 AGGCTCAAAGGTCCGATCAG 59.461 55.000 0.00 0.00 0.00 2.90
200 201 0.984230 AAGGCTCAAAGGTCCGATCA 59.016 50.000 0.00 0.00 0.00 2.92
201 202 2.010497 GAAAGGCTCAAAGGTCCGATC 58.990 52.381 0.00 0.00 0.00 3.69
202 203 1.340114 GGAAAGGCTCAAAGGTCCGAT 60.340 52.381 0.00 0.00 0.00 4.18
203 204 0.036306 GGAAAGGCTCAAAGGTCCGA 59.964 55.000 0.00 0.00 0.00 4.55
204 205 0.960861 GGGAAAGGCTCAAAGGTCCG 60.961 60.000 0.00 0.00 0.00 4.79
205 206 0.112412 TGGGAAAGGCTCAAAGGTCC 59.888 55.000 0.00 0.00 0.00 4.46
206 207 1.248486 GTGGGAAAGGCTCAAAGGTC 58.752 55.000 0.00 0.00 0.00 3.85
207 208 0.178961 GGTGGGAAAGGCTCAAAGGT 60.179 55.000 0.00 0.00 0.00 3.50
208 209 0.113190 AGGTGGGAAAGGCTCAAAGG 59.887 55.000 0.00 0.00 0.00 3.11
209 210 1.251251 CAGGTGGGAAAGGCTCAAAG 58.749 55.000 0.00 0.00 0.00 2.77
210 211 0.178964 CCAGGTGGGAAAGGCTCAAA 60.179 55.000 0.00 0.00 40.01 2.69
211 212 1.460255 CCAGGTGGGAAAGGCTCAA 59.540 57.895 0.00 0.00 40.01 3.02
212 213 3.170362 CCAGGTGGGAAAGGCTCA 58.830 61.111 0.00 0.00 40.01 4.26
213 214 2.361737 GCCAGGTGGGAAAGGCTC 60.362 66.667 0.00 0.00 43.70 4.70
214 215 3.984732 GGCCAGGTGGGAAAGGCT 61.985 66.667 0.00 0.00 46.23 4.58
216 217 3.589542 TGGGCCAGGTGGGAAAGG 61.590 66.667 0.00 0.00 40.01 3.11
217 218 2.283173 GTGGGCCAGGTGGGAAAG 60.283 66.667 6.40 0.00 40.01 2.62
218 219 2.780924 AGTGGGCCAGGTGGGAAA 60.781 61.111 6.40 0.00 40.01 3.13
219 220 3.579302 CAGTGGGCCAGGTGGGAA 61.579 66.667 6.40 0.00 40.01 3.97
225 226 2.463589 TTAAGTCGCAGTGGGCCAGG 62.464 60.000 6.40 2.98 40.31 4.45
226 227 0.392998 ATTAAGTCGCAGTGGGCCAG 60.393 55.000 6.40 0.00 40.31 4.85
227 228 0.392461 GATTAAGTCGCAGTGGGCCA 60.392 55.000 0.00 0.00 40.31 5.36
228 229 1.095807 GGATTAAGTCGCAGTGGGCC 61.096 60.000 1.51 0.00 40.31 5.80
229 230 1.429148 CGGATTAAGTCGCAGTGGGC 61.429 60.000 1.51 0.00 39.90 5.36
230 231 2.677971 CGGATTAAGTCGCAGTGGG 58.322 57.895 0.00 0.00 0.00 4.61
249 250 4.742201 CGACAGCTGGGACCGGTG 62.742 72.222 14.63 0.00 36.06 4.94
261 262 3.049674 AATGTGGCACGCCGACAG 61.050 61.111 13.77 0.00 38.60 3.51
262 263 3.353029 CAATGTGGCACGCCGACA 61.353 61.111 13.77 13.30 38.60 4.35
263 264 4.759096 GCAATGTGGCACGCCGAC 62.759 66.667 13.77 3.85 38.60 4.79
265 266 4.764336 CTGCAATGTGGCACGCCG 62.764 66.667 13.77 3.11 39.25 6.46
267 268 1.996786 ATAGCTGCAATGTGGCACGC 61.997 55.000 13.77 11.01 39.25 5.34
268 269 0.248336 CATAGCTGCAATGTGGCACG 60.248 55.000 13.77 0.00 39.25 5.34
269 270 0.101759 CCATAGCTGCAATGTGGCAC 59.898 55.000 11.55 11.55 39.25 5.01
270 271 0.323633 ACCATAGCTGCAATGTGGCA 60.324 50.000 12.62 0.00 42.53 4.92
271 272 0.819582 AACCATAGCTGCAATGTGGC 59.180 50.000 12.62 0.79 32.51 5.01
272 273 2.357009 GAGAACCATAGCTGCAATGTGG 59.643 50.000 11.48 11.48 35.24 4.17
273 274 2.357009 GGAGAACCATAGCTGCAATGTG 59.643 50.000 1.02 0.00 35.97 3.21
274 275 2.648059 GGAGAACCATAGCTGCAATGT 58.352 47.619 1.02 0.00 35.97 2.71
275 276 1.952296 GGGAGAACCATAGCTGCAATG 59.048 52.381 1.02 0.00 39.85 2.82
276 277 1.565759 TGGGAGAACCATAGCTGCAAT 59.434 47.619 1.02 0.00 46.80 3.56
277 278 0.991146 TGGGAGAACCATAGCTGCAA 59.009 50.000 1.02 0.00 46.80 4.08
278 279 2.695561 TGGGAGAACCATAGCTGCA 58.304 52.632 1.02 0.00 46.80 4.41
287 288 1.988982 GATCTGGCCCTGGGAGAACC 61.989 65.000 19.27 8.69 40.81 3.62
288 289 1.529309 GATCTGGCCCTGGGAGAAC 59.471 63.158 19.27 6.43 0.00 3.01
289 290 1.694169 GGATCTGGCCCTGGGAGAA 60.694 63.158 19.27 0.00 0.00 2.87
290 291 2.040464 GGATCTGGCCCTGGGAGA 60.040 66.667 19.27 12.07 0.00 3.71
291 292 3.174265 GGGATCTGGCCCTGGGAG 61.174 72.222 19.27 5.94 45.12 4.30
298 299 3.797353 TGGCGAAGGGATCTGGCC 61.797 66.667 0.00 0.00 41.26 5.36
299 300 2.514824 GTGGCGAAGGGATCTGGC 60.515 66.667 0.00 0.00 0.00 4.85
300 301 2.202932 CGTGGCGAAGGGATCTGG 60.203 66.667 0.00 0.00 0.00 3.86
301 302 2.892425 GCGTGGCGAAGGGATCTG 60.892 66.667 0.00 0.00 0.00 2.90
302 303 4.162690 GGCGTGGCGAAGGGATCT 62.163 66.667 0.00 0.00 0.00 2.75
336 337 3.022981 CGACAGCTTCGTCCTTCTC 57.977 57.895 9.30 0.00 43.24 2.87
356 359 3.695606 TGAGCAGCGACCTGGGTC 61.696 66.667 9.55 9.55 39.54 4.46
423 426 1.683917 CTCCTACACGATGGCTAGCTT 59.316 52.381 15.72 2.16 0.00 3.74
424 427 1.323412 CTCCTACACGATGGCTAGCT 58.677 55.000 15.72 0.00 0.00 3.32
435 439 2.820037 GCGGCTTGCCTCCTACAC 60.820 66.667 10.12 0.00 37.76 2.90
567 576 2.383245 CTTCAGGTGCAGACCACGGT 62.383 60.000 0.00 0.00 45.98 4.83
569 578 0.668706 CTCTTCAGGTGCAGACCACG 60.669 60.000 0.00 0.00 45.98 4.94
571 580 0.681733 GTCTCTTCAGGTGCAGACCA 59.318 55.000 0.00 0.00 45.98 4.02
579 588 2.049063 GCGTGCGTCTCTTCAGGT 60.049 61.111 0.00 0.00 0.00 4.00
596 605 0.306533 GCTGGGTTTACGTGTGTGTG 59.693 55.000 0.00 0.00 0.00 3.82
598 607 1.567537 CGCTGGGTTTACGTGTGTG 59.432 57.895 0.00 0.00 0.00 3.82
599 608 1.595929 CCGCTGGGTTTACGTGTGT 60.596 57.895 0.00 0.00 0.00 3.72
605 614 2.124860 ATCGGCCGCTGGGTTTAC 60.125 61.111 23.51 0.00 34.97 2.01
606 615 2.188469 GATCGGCCGCTGGGTTTA 59.812 61.111 23.51 0.00 34.97 2.01
612 621 4.794439 TGTGACGATCGGCCGCTG 62.794 66.667 23.51 15.08 0.00 5.18
613 622 4.498520 CTGTGACGATCGGCCGCT 62.499 66.667 23.51 12.22 0.00 5.52
615 624 2.880879 CACTGTGACGATCGGCCG 60.881 66.667 22.12 22.12 0.00 6.13
616 625 3.188786 GCACTGTGACGATCGGCC 61.189 66.667 20.39 10.60 0.00 6.13
617 626 1.959899 CTTGCACTGTGACGATCGGC 61.960 60.000 20.98 18.62 0.00 5.54
618 627 0.667487 ACTTGCACTGTGACGATCGG 60.667 55.000 20.98 3.20 0.00 4.18
619 628 1.136529 CAACTTGCACTGTGACGATCG 60.137 52.381 14.88 14.88 0.00 3.69
620 629 1.398960 GCAACTTGCACTGTGACGATC 60.399 52.381 12.86 0.00 44.26 3.69
621 630 0.588252 GCAACTTGCACTGTGACGAT 59.412 50.000 12.86 0.00 44.26 3.73
622 631 2.013807 GCAACTTGCACTGTGACGA 58.986 52.632 12.86 2.18 44.26 4.20
623 632 4.595629 GCAACTTGCACTGTGACG 57.404 55.556 12.86 0.97 44.26 4.35
646 655 3.309296 TCTCCCTCTCTCTCTCTCTCTC 58.691 54.545 0.00 0.00 0.00 3.20
654 663 3.309296 TCTCTCTCTCTCCCTCTCTCTC 58.691 54.545 0.00 0.00 0.00 3.20
655 664 3.051803 TCTCTCTCTCTCTCCCTCTCTCT 60.052 52.174 0.00 0.00 0.00 3.10
657 666 3.051803 TCTCTCTCTCTCTCTCCCTCTCT 60.052 52.174 0.00 0.00 0.00 3.10
658 667 3.309296 TCTCTCTCTCTCTCTCCCTCTC 58.691 54.545 0.00 0.00 0.00 3.20
659 668 3.051803 TCTCTCTCTCTCTCTCTCCCTCT 60.052 52.174 0.00 0.00 0.00 3.69
660 669 3.309296 TCTCTCTCTCTCTCTCTCCCTC 58.691 54.545 0.00 0.00 0.00 4.30
661 670 3.051803 TCTCTCTCTCTCTCTCTCTCCCT 60.052 52.174 0.00 0.00 0.00 4.20
662 671 3.309296 TCTCTCTCTCTCTCTCTCTCCC 58.691 54.545 0.00 0.00 0.00 4.30
663 672 4.590647 TCATCTCTCTCTCTCTCTCTCTCC 59.409 50.000 0.00 0.00 0.00 3.71
664 673 5.798125 TCATCTCTCTCTCTCTCTCTCTC 57.202 47.826 0.00 0.00 0.00 3.20
665 674 6.760440 ATTCATCTCTCTCTCTCTCTCTCT 57.240 41.667 0.00 0.00 0.00 3.10
666 675 7.284034 ACAAATTCATCTCTCTCTCTCTCTCTC 59.716 40.741 0.00 0.00 0.00 3.20
667 676 7.067859 CACAAATTCATCTCTCTCTCTCTCTCT 59.932 40.741 0.00 0.00 0.00 3.10
668 677 7.148018 ACACAAATTCATCTCTCTCTCTCTCTC 60.148 40.741 0.00 0.00 0.00 3.20
669 678 6.664816 ACACAAATTCATCTCTCTCTCTCTCT 59.335 38.462 0.00 0.00 0.00 3.10
670 679 6.866480 ACACAAATTCATCTCTCTCTCTCTC 58.134 40.000 0.00 0.00 0.00 3.20
671 680 6.855763 ACACAAATTCATCTCTCTCTCTCT 57.144 37.500 0.00 0.00 0.00 3.10
672 681 7.491048 GGTTACACAAATTCATCTCTCTCTCTC 59.509 40.741 0.00 0.00 0.00 3.20
673 682 7.038729 TGGTTACACAAATTCATCTCTCTCTCT 60.039 37.037 0.00 0.00 0.00 3.10
674 683 7.099764 TGGTTACACAAATTCATCTCTCTCTC 58.900 38.462 0.00 0.00 0.00 3.20
675 684 7.009179 TGGTTACACAAATTCATCTCTCTCT 57.991 36.000 0.00 0.00 0.00 3.10
676 685 7.856145 ATGGTTACACAAATTCATCTCTCTC 57.144 36.000 0.00 0.00 0.00 3.20
677 686 8.517878 CAAATGGTTACACAAATTCATCTCTCT 58.482 33.333 0.00 0.00 0.00 3.10
678 687 7.756722 CCAAATGGTTACACAAATTCATCTCTC 59.243 37.037 0.00 0.00 0.00 3.20
679 688 7.451255 TCCAAATGGTTACACAAATTCATCTCT 59.549 33.333 0.00 0.00 36.34 3.10
680 689 7.601856 TCCAAATGGTTACACAAATTCATCTC 58.398 34.615 0.00 0.00 36.34 2.75
681 690 7.537596 TCCAAATGGTTACACAAATTCATCT 57.462 32.000 0.00 0.00 36.34 2.90
682 691 7.220683 CGATCCAAATGGTTACACAAATTCATC 59.779 37.037 0.00 0.00 36.34 2.92
683 692 7.035004 CGATCCAAATGGTTACACAAATTCAT 58.965 34.615 0.00 0.00 36.34 2.57
684 693 6.385843 CGATCCAAATGGTTACACAAATTCA 58.614 36.000 0.00 0.00 36.34 2.57
685 694 5.288472 GCGATCCAAATGGTTACACAAATTC 59.712 40.000 0.00 0.00 36.34 2.17
771 782 2.203252 CTGCCATCCCATCCGTGG 60.203 66.667 0.00 0.00 45.61 4.94
775 786 1.906824 CATGCCTGCCATCCCATCC 60.907 63.158 0.00 0.00 29.71 3.51
776 787 1.152610 ACATGCCTGCCATCCCATC 60.153 57.895 0.00 0.00 29.71 3.51
777 788 1.456892 CACATGCCTGCCATCCCAT 60.457 57.895 0.00 0.00 29.71 4.00
778 789 2.043752 CACATGCCTGCCATCCCA 60.044 61.111 0.00 0.00 29.71 4.37
785 796 2.177531 CGCTGTTCACATGCCTGC 59.822 61.111 0.00 0.00 0.00 4.85
788 799 2.482374 GCTCGCTGTTCACATGCC 59.518 61.111 0.00 0.00 0.00 4.40
789 800 2.097160 CGCTCGCTGTTCACATGC 59.903 61.111 0.00 0.00 0.00 4.06
857 874 4.315941 GAGGGGATAAGGGCGCGG 62.316 72.222 8.83 0.00 0.00 6.46
858 875 4.664677 CGAGGGGATAAGGGCGCG 62.665 72.222 0.00 0.00 0.00 6.86
859 876 4.315941 CCGAGGGGATAAGGGCGC 62.316 72.222 0.00 0.00 34.06 6.53
922 941 1.593933 TGCGGTGTGTACGAGTTTTTC 59.406 47.619 0.00 0.00 0.00 2.29
1656 1696 1.662446 GCACACACACAAGGCATGC 60.662 57.895 9.90 9.90 0.00 4.06
1707 1751 5.403246 ACATGTTACAGTTCGAGCTTCTAG 58.597 41.667 0.00 0.00 0.00 2.43
1720 1764 6.038825 TGTGTACAAGGGAAAACATGTTACAG 59.961 38.462 12.39 0.99 0.00 2.74
1788 1845 4.991056 GTCCGTGTAGGTACGATCATACTA 59.009 45.833 0.00 0.00 46.46 1.82
1789 1846 3.812053 GTCCGTGTAGGTACGATCATACT 59.188 47.826 0.00 0.00 46.46 2.12
1802 1864 0.313987 TCTGTGCTGTGTCCGTGTAG 59.686 55.000 0.00 0.00 0.00 2.74
1803 1865 0.747852 TTCTGTGCTGTGTCCGTGTA 59.252 50.000 0.00 0.00 0.00 2.90
1810 1872 1.072159 GAGGCCTTCTGTGCTGTGT 59.928 57.895 6.77 0.00 0.00 3.72
1884 1946 5.712152 ACTTTCTTTGCTGGACCAATAAG 57.288 39.130 0.00 0.00 0.00 1.73
1933 1997 5.920193 TCCAAAAATCATCTCCCATGTTC 57.080 39.130 0.00 0.00 0.00 3.18
2006 2546 8.971321 ACGTGATCTTTTCAGAATTTTTCAATG 58.029 29.630 0.00 0.00 34.17 2.82
2015 2555 8.948631 ACATATGTACGTGATCTTTTCAGAAT 57.051 30.769 6.56 0.00 34.17 2.40
2030 2570 9.614465 CACGTTTCAAACTAATACATATGTACG 57.386 33.333 17.69 15.80 32.72 3.67
2058 2854 9.195411 TCATTTATCTTACGAAAACTTACACGT 57.805 29.630 0.00 0.00 41.66 4.49
2107 2904 7.814264 AATGACTTGAACCATATCATTCTCC 57.186 36.000 0.00 0.00 35.59 3.71
2231 3028 7.665559 TGCACAAAATTCTCTACCTCATTTAGT 59.334 33.333 0.00 0.00 0.00 2.24
2232 3029 8.044060 TGCACAAAATTCTCTACCTCATTTAG 57.956 34.615 0.00 0.00 0.00 1.85
2237 3034 7.665559 ACTTAATGCACAAAATTCTCTACCTCA 59.334 33.333 0.00 0.00 0.00 3.86
2418 3258 9.101655 CTCATTTTCCAAAACTTGACAAAAGAT 57.898 29.630 0.00 0.00 30.76 2.40
2426 3266 6.510478 CGACGTACTCATTTTCCAAAACTTGA 60.510 38.462 0.00 0.00 0.00 3.02
2507 3347 6.874288 AGCTAGAAATGTTGGCTATGATTC 57.126 37.500 0.00 0.00 0.00 2.52
2547 3389 4.887071 TCATAAGAGGCACCGCAAAATATT 59.113 37.500 0.00 0.00 0.00 1.28
2555 3397 1.448985 TTTGTCATAAGAGGCACCGC 58.551 50.000 0.00 0.00 0.00 5.68
2557 3399 3.366374 GCAGTTTTGTCATAAGAGGCACC 60.366 47.826 0.00 0.00 0.00 5.01
2558 3400 3.253188 TGCAGTTTTGTCATAAGAGGCAC 59.747 43.478 0.00 0.00 0.00 5.01
2576 3420 6.655003 TCTTATTTAGGTTTGGTCTTCTGCAG 59.345 38.462 7.63 7.63 0.00 4.41
2579 3423 7.067494 CCCATCTTATTTAGGTTTGGTCTTCTG 59.933 40.741 0.00 0.00 0.00 3.02
2609 3453 4.003648 CGCCTCTTCAAAAACTATGAGGT 58.996 43.478 0.00 0.00 42.04 3.85
2610 3454 3.181506 GCGCCTCTTCAAAAACTATGAGG 60.182 47.826 0.00 0.00 42.68 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.