Multiple sequence alignment - TraesCS1B01G200200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G200200 chr1B 100.000 6120 0 0 1 6120 359192978 359199097 0.000000e+00 11302.0
1 TraesCS1B01G200200 chr1D 95.260 2890 91 19 725 3592 253221982 253219117 0.000000e+00 4536.0
2 TraesCS1B01G200200 chr1D 96.409 1782 48 9 3623 5401 253219120 253217352 0.000000e+00 2922.0
3 TraesCS1B01G200200 chr1D 90.196 306 16 5 5389 5681 253215098 253214794 2.680000e-103 387.0
4 TraesCS1B01G200200 chr1D 92.019 213 8 5 5916 6120 253210970 253210759 2.160000e-74 291.0
5 TraesCS1B01G200200 chr1D 95.122 41 0 2 5301 5341 253215093 253215055 5.120000e-06 63.9
6 TraesCS1B01G200200 chr1D 100.000 32 0 0 5898 5929 253211000 253210969 6.620000e-05 60.2
7 TraesCS1B01G200200 chr1A 95.295 2699 95 16 751 3444 325054570 325051899 0.000000e+00 4252.0
8 TraesCS1B01G200200 chr1A 93.681 2706 108 32 3443 6120 325051739 325049069 0.000000e+00 3991.0
9 TraesCS1B01G200200 chr1A 88.995 209 19 2 1 206 71082689 71082482 7.870000e-64 255.0
10 TraesCS1B01G200200 chr1A 87.081 209 21 4 1 206 389797319 389797524 1.330000e-56 231.0
11 TraesCS1B01G200200 chr1A 95.122 41 0 2 5301 5341 325049802 325049764 5.120000e-06 63.9
12 TraesCS1B01G200200 chr7A 85.660 530 68 6 204 726 1912146 1912674 8.970000e-153 551.0
13 TraesCS1B01G200200 chr7A 97.500 40 1 0 686 725 26745284 26745245 1.100000e-07 69.4
14 TraesCS1B01G200200 chr7B 83.844 359 48 6 1401 1758 60070187 60069838 3.540000e-87 333.0
15 TraesCS1B01G200200 chr6D 84.444 135 5 4 204 338 448622270 448622388 1.080000e-22 119.0
16 TraesCS1B01G200200 chr4A 91.837 49 3 1 686 734 604648368 604648321 3.960000e-07 67.6
17 TraesCS1B01G200200 chr5A 93.333 45 2 1 686 729 90612022 90611978 1.420000e-06 65.8
18 TraesCS1B01G200200 chr3D 92.857 42 2 1 685 726 483196648 483196688 6.620000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G200200 chr1B 359192978 359199097 6119 False 11302.000000 11302 100.000000 1 6120 1 chr1B.!!$F1 6119
1 TraesCS1B01G200200 chr1D 253210759 253221982 11223 True 1376.683333 4536 94.834333 725 6120 6 chr1D.!!$R1 5395
2 TraesCS1B01G200200 chr1A 325049069 325054570 5501 True 2768.966667 4252 94.699333 751 6120 3 chr1A.!!$R2 5369
3 TraesCS1B01G200200 chr7A 1912146 1912674 528 False 551.000000 551 85.660000 204 726 1 chr7A.!!$F1 522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
137 138 0.034476 CAGAGAGGTGAGCAGCAACA 59.966 55.000 0.00 0.00 36.36 3.33 F
144 145 0.101040 GTGAGCAGCAACAACAGCAA 59.899 50.000 0.00 0.00 0.00 3.91 F
825 832 0.103876 AAAACCCTCCTCCCCTCTGT 60.104 55.000 0.00 0.00 0.00 3.41 F
1094 1101 0.253044 TTCTTGCCCATCTTCCTCCG 59.747 55.000 0.00 0.00 0.00 4.63 F
1258 1266 1.334869 CTTTGCAGGGGCGCTATAAAG 59.665 52.381 18.45 18.45 45.35 1.85 F
3002 3016 0.037590 TGGTGGCATTGTACTGACCC 59.962 55.000 0.00 0.00 0.00 4.46 F
4726 4919 2.037251 AGTGACTGCAGATGGTAAACGT 59.963 45.455 23.35 0.00 0.00 3.99 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1607 1616 1.420138 TCAAGGTCTCCAGGACAAACC 59.580 52.381 3.50 3.5 46.16 3.27 R
2082 2093 3.973206 TCAAAACGAGGAAGCTCCATA 57.027 42.857 0.00 0.0 39.61 2.74 R
2153 2165 2.440409 AGAAACAGAAGCATCGGCATT 58.560 42.857 0.00 0.0 44.61 3.56 R
3001 3015 3.103637 TGGGAACAAAGTGGAACGG 57.896 52.632 0.00 0.0 39.29 4.44 R
3223 3237 7.124052 AGATTCCCTGAAACATTTCATGAGAT 58.876 34.615 7.48 0.0 45.26 2.75 R
4805 4998 0.178967 AATGCCACATCCACACCACA 60.179 50.000 0.00 0.0 0.00 4.17 R
5561 8032 0.916086 ACACTGTCCTGTTTCCCACA 59.084 50.000 0.00 0.0 0.00 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.683211 AGTGATTTGGTTGGAGCCTT 57.317 45.000 0.00 0.00 0.00 4.35
20 21 2.962859 AGTGATTTGGTTGGAGCCTTT 58.037 42.857 0.00 0.00 0.00 3.11
21 22 3.308401 AGTGATTTGGTTGGAGCCTTTT 58.692 40.909 0.00 0.00 0.00 2.27
22 23 3.070015 AGTGATTTGGTTGGAGCCTTTTG 59.930 43.478 0.00 0.00 0.00 2.44
23 24 3.037549 TGATTTGGTTGGAGCCTTTTGT 58.962 40.909 0.00 0.00 0.00 2.83
24 25 4.038642 GTGATTTGGTTGGAGCCTTTTGTA 59.961 41.667 0.00 0.00 0.00 2.41
25 26 4.280677 TGATTTGGTTGGAGCCTTTTGTAG 59.719 41.667 0.00 0.00 0.00 2.74
26 27 3.306472 TTGGTTGGAGCCTTTTGTAGT 57.694 42.857 0.00 0.00 0.00 2.73
27 28 2.858745 TGGTTGGAGCCTTTTGTAGTC 58.141 47.619 0.00 0.00 0.00 2.59
28 29 2.160205 GGTTGGAGCCTTTTGTAGTCC 58.840 52.381 0.00 0.00 0.00 3.85
29 30 1.804748 GTTGGAGCCTTTTGTAGTCCG 59.195 52.381 0.00 0.00 0.00 4.79
30 31 1.053424 TGGAGCCTTTTGTAGTCCGT 58.947 50.000 0.00 0.00 0.00 4.69
31 32 1.001633 TGGAGCCTTTTGTAGTCCGTC 59.998 52.381 0.00 0.00 0.00 4.79
32 33 1.347320 GAGCCTTTTGTAGTCCGTCG 58.653 55.000 0.00 0.00 0.00 5.12
33 34 0.037605 AGCCTTTTGTAGTCCGTCGG 60.038 55.000 4.39 4.39 0.00 4.79
34 35 0.320160 GCCTTTTGTAGTCCGTCGGT 60.320 55.000 11.88 0.00 0.00 4.69
35 36 1.706443 CCTTTTGTAGTCCGTCGGTC 58.294 55.000 11.88 5.68 0.00 4.79
36 37 1.000060 CCTTTTGTAGTCCGTCGGTCA 60.000 52.381 11.88 4.33 0.00 4.02
37 38 2.353406 CCTTTTGTAGTCCGTCGGTCAT 60.353 50.000 11.88 0.99 0.00 3.06
38 39 2.357327 TTTGTAGTCCGTCGGTCATG 57.643 50.000 11.88 0.00 0.00 3.07
39 40 0.108992 TTGTAGTCCGTCGGTCATGC 60.109 55.000 11.88 2.94 0.00 4.06
40 41 1.245376 TGTAGTCCGTCGGTCATGCA 61.245 55.000 11.88 5.57 0.00 3.96
41 42 0.108992 GTAGTCCGTCGGTCATGCAA 60.109 55.000 11.88 0.00 0.00 4.08
42 43 0.172578 TAGTCCGTCGGTCATGCAAG 59.827 55.000 11.88 0.00 0.00 4.01
43 44 1.374252 GTCCGTCGGTCATGCAAGT 60.374 57.895 11.88 0.00 0.00 3.16
44 45 0.108992 GTCCGTCGGTCATGCAAGTA 60.109 55.000 11.88 0.00 0.00 2.24
45 46 0.604073 TCCGTCGGTCATGCAAGTAA 59.396 50.000 11.88 0.00 0.00 2.24
46 47 0.719465 CCGTCGGTCATGCAAGTAAC 59.281 55.000 2.08 0.00 0.00 2.50
47 48 0.719465 CGTCGGTCATGCAAGTAACC 59.281 55.000 0.00 0.00 0.00 2.85
51 52 2.894307 GGTCATGCAAGTAACCGAAC 57.106 50.000 0.00 0.00 0.00 3.95
52 53 1.467342 GGTCATGCAAGTAACCGAACC 59.533 52.381 0.00 0.00 0.00 3.62
53 54 2.423577 GTCATGCAAGTAACCGAACCT 58.576 47.619 0.00 0.00 0.00 3.50
54 55 2.159627 GTCATGCAAGTAACCGAACCTG 59.840 50.000 0.00 0.00 0.00 4.00
55 56 2.037902 TCATGCAAGTAACCGAACCTGA 59.962 45.455 0.00 0.00 0.00 3.86
56 57 2.851263 TGCAAGTAACCGAACCTGAT 57.149 45.000 0.00 0.00 0.00 2.90
57 58 3.134574 TGCAAGTAACCGAACCTGATT 57.865 42.857 0.00 0.00 0.00 2.57
58 59 2.811431 TGCAAGTAACCGAACCTGATTG 59.189 45.455 0.00 0.00 0.00 2.67
59 60 2.812011 GCAAGTAACCGAACCTGATTGT 59.188 45.455 0.00 0.00 0.00 2.71
60 61 3.998341 GCAAGTAACCGAACCTGATTGTA 59.002 43.478 0.00 0.00 0.00 2.41
61 62 4.453136 GCAAGTAACCGAACCTGATTGTAA 59.547 41.667 0.00 0.00 0.00 2.41
62 63 5.123344 GCAAGTAACCGAACCTGATTGTAAT 59.877 40.000 0.00 0.00 0.00 1.89
63 64 6.542852 CAAGTAACCGAACCTGATTGTAATG 58.457 40.000 0.00 0.00 0.00 1.90
64 65 6.045072 AGTAACCGAACCTGATTGTAATGA 57.955 37.500 0.00 0.00 0.00 2.57
65 66 6.650120 AGTAACCGAACCTGATTGTAATGAT 58.350 36.000 0.00 0.00 0.00 2.45
66 67 7.110155 AGTAACCGAACCTGATTGTAATGATT 58.890 34.615 0.00 0.00 0.00 2.57
67 68 8.262227 AGTAACCGAACCTGATTGTAATGATTA 58.738 33.333 0.00 0.00 0.00 1.75
68 69 7.553881 AACCGAACCTGATTGTAATGATTAG 57.446 36.000 0.00 0.00 0.00 1.73
69 70 6.650120 ACCGAACCTGATTGTAATGATTAGT 58.350 36.000 0.00 0.00 0.00 2.24
70 71 6.761714 ACCGAACCTGATTGTAATGATTAGTC 59.238 38.462 0.00 0.00 0.00 2.59
71 72 6.986817 CCGAACCTGATTGTAATGATTAGTCT 59.013 38.462 0.00 0.00 0.00 3.24
72 73 8.141909 CCGAACCTGATTGTAATGATTAGTCTA 58.858 37.037 0.00 0.00 0.00 2.59
73 74 9.698309 CGAACCTGATTGTAATGATTAGTCTAT 57.302 33.333 0.00 0.00 0.00 1.98
79 80 9.778741 TGATTGTAATGATTAGTCTATTCACCC 57.221 33.333 6.61 0.56 0.00 4.61
80 81 9.778741 GATTGTAATGATTAGTCTATTCACCCA 57.221 33.333 6.61 2.64 0.00 4.51
82 83 9.613428 TTGTAATGATTAGTCTATTCACCCAAG 57.387 33.333 6.61 0.00 0.00 3.61
83 84 7.715249 TGTAATGATTAGTCTATTCACCCAAGC 59.285 37.037 6.61 0.00 0.00 4.01
84 85 5.957771 TGATTAGTCTATTCACCCAAGCT 57.042 39.130 1.14 0.00 0.00 3.74
85 86 6.313519 TGATTAGTCTATTCACCCAAGCTT 57.686 37.500 0.00 0.00 0.00 3.74
86 87 6.349300 TGATTAGTCTATTCACCCAAGCTTC 58.651 40.000 0.00 0.00 0.00 3.86
87 88 5.755409 TTAGTCTATTCACCCAAGCTTCA 57.245 39.130 0.00 0.00 0.00 3.02
88 89 4.213564 AGTCTATTCACCCAAGCTTCAG 57.786 45.455 0.00 0.00 0.00 3.02
89 90 3.840666 AGTCTATTCACCCAAGCTTCAGA 59.159 43.478 0.00 0.00 0.00 3.27
90 91 3.935828 GTCTATTCACCCAAGCTTCAGAC 59.064 47.826 0.00 0.00 0.00 3.51
91 92 2.957402 ATTCACCCAAGCTTCAGACA 57.043 45.000 0.00 0.00 0.00 3.41
92 93 2.727123 TTCACCCAAGCTTCAGACAA 57.273 45.000 0.00 0.00 0.00 3.18
93 94 1.967319 TCACCCAAGCTTCAGACAAC 58.033 50.000 0.00 0.00 0.00 3.32
94 95 1.211703 TCACCCAAGCTTCAGACAACA 59.788 47.619 0.00 0.00 0.00 3.33
95 96 1.334869 CACCCAAGCTTCAGACAACAC 59.665 52.381 0.00 0.00 0.00 3.32
96 97 1.212935 ACCCAAGCTTCAGACAACACT 59.787 47.619 0.00 0.00 0.00 3.55
97 98 1.605710 CCCAAGCTTCAGACAACACTG 59.394 52.381 0.00 0.00 39.02 3.66
98 99 2.564771 CCAAGCTTCAGACAACACTGA 58.435 47.619 0.00 0.00 43.83 3.41
109 110 5.991606 TCAGACAACACTGAATCTTACAAGG 59.008 40.000 0.00 0.00 42.79 3.61
110 111 5.180117 CAGACAACACTGAATCTTACAAGGG 59.820 44.000 0.00 0.00 39.94 3.95
111 112 4.398319 ACAACACTGAATCTTACAAGGGG 58.602 43.478 0.00 0.00 0.00 4.79
112 113 4.141251 ACAACACTGAATCTTACAAGGGGT 60.141 41.667 0.00 0.00 0.00 4.95
113 114 4.724279 ACACTGAATCTTACAAGGGGTT 57.276 40.909 0.00 0.00 0.00 4.11
114 115 4.398319 ACACTGAATCTTACAAGGGGTTG 58.602 43.478 0.00 0.00 0.00 3.77
115 116 3.191371 CACTGAATCTTACAAGGGGTTGC 59.809 47.826 0.00 0.00 0.00 4.17
116 117 2.420022 CTGAATCTTACAAGGGGTTGCG 59.580 50.000 0.00 0.00 0.00 4.85
117 118 2.039216 TGAATCTTACAAGGGGTTGCGA 59.961 45.455 0.00 0.00 0.00 5.10
118 119 2.109425 ATCTTACAAGGGGTTGCGAC 57.891 50.000 0.00 0.00 0.00 5.19
119 120 0.759959 TCTTACAAGGGGTTGCGACA 59.240 50.000 6.39 0.00 0.00 4.35
120 121 1.156736 CTTACAAGGGGTTGCGACAG 58.843 55.000 6.39 0.00 0.00 3.51
121 122 0.759959 TTACAAGGGGTTGCGACAGA 59.240 50.000 6.39 0.00 0.00 3.41
122 123 0.320374 TACAAGGGGTTGCGACAGAG 59.680 55.000 6.39 0.00 0.00 3.35
123 124 1.371183 CAAGGGGTTGCGACAGAGA 59.629 57.895 6.39 0.00 0.00 3.10
124 125 0.671781 CAAGGGGTTGCGACAGAGAG 60.672 60.000 6.39 0.00 0.00 3.20
125 126 1.831652 AAGGGGTTGCGACAGAGAGG 61.832 60.000 6.39 0.00 0.00 3.69
126 127 2.584391 GGGGTTGCGACAGAGAGGT 61.584 63.158 6.39 0.00 0.00 3.85
127 128 1.374758 GGGTTGCGACAGAGAGGTG 60.375 63.158 6.39 0.00 0.00 4.00
128 129 1.666011 GGTTGCGACAGAGAGGTGA 59.334 57.895 6.39 0.00 0.00 4.02
129 130 0.389166 GGTTGCGACAGAGAGGTGAG 60.389 60.000 6.39 0.00 0.00 3.51
130 131 1.011451 GTTGCGACAGAGAGGTGAGC 61.011 60.000 0.00 0.00 0.00 4.26
131 132 1.463553 TTGCGACAGAGAGGTGAGCA 61.464 55.000 0.00 0.00 34.57 4.26
132 133 1.153862 GCGACAGAGAGGTGAGCAG 60.154 63.158 0.00 0.00 0.00 4.24
133 134 1.153862 CGACAGAGAGGTGAGCAGC 60.154 63.158 0.00 0.00 0.00 5.25
134 135 1.871126 CGACAGAGAGGTGAGCAGCA 61.871 60.000 0.00 0.00 0.00 4.41
135 136 0.319728 GACAGAGAGGTGAGCAGCAA 59.680 55.000 0.00 0.00 0.00 3.91
136 137 0.034616 ACAGAGAGGTGAGCAGCAAC 59.965 55.000 0.00 0.00 0.00 4.17
137 138 0.034476 CAGAGAGGTGAGCAGCAACA 59.966 55.000 0.00 0.00 36.36 3.33
138 139 0.761187 AGAGAGGTGAGCAGCAACAA 59.239 50.000 0.00 0.00 36.36 2.83
139 140 0.871057 GAGAGGTGAGCAGCAACAAC 59.129 55.000 0.00 0.00 36.36 3.32
140 141 0.181114 AGAGGTGAGCAGCAACAACA 59.819 50.000 9.71 0.00 36.36 3.33
141 142 0.590195 GAGGTGAGCAGCAACAACAG 59.410 55.000 9.71 0.00 36.36 3.16
142 143 1.008079 GGTGAGCAGCAACAACAGC 60.008 57.895 0.00 0.00 33.18 4.40
143 144 1.727511 GGTGAGCAGCAACAACAGCA 61.728 55.000 0.00 0.00 33.18 4.41
144 145 0.101040 GTGAGCAGCAACAACAGCAA 59.899 50.000 0.00 0.00 0.00 3.91
145 146 0.382873 TGAGCAGCAACAACAGCAAG 59.617 50.000 0.00 0.00 0.00 4.01
146 147 0.664761 GAGCAGCAACAACAGCAAGA 59.335 50.000 0.00 0.00 0.00 3.02
147 148 0.666913 AGCAGCAACAACAGCAAGAG 59.333 50.000 0.00 0.00 0.00 2.85
148 149 0.318445 GCAGCAACAACAGCAAGAGG 60.318 55.000 0.00 0.00 0.00 3.69
149 150 0.318445 CAGCAACAACAGCAAGAGGC 60.318 55.000 0.00 0.00 45.30 4.70
160 161 2.704725 GCAAGAGGCGTTGATGAAAA 57.295 45.000 6.80 0.00 0.00 2.29
161 162 2.589014 GCAAGAGGCGTTGATGAAAAG 58.411 47.619 6.80 0.00 0.00 2.27
162 163 2.226437 GCAAGAGGCGTTGATGAAAAGA 59.774 45.455 6.80 0.00 0.00 2.52
163 164 3.304659 GCAAGAGGCGTTGATGAAAAGAA 60.305 43.478 6.80 0.00 0.00 2.52
164 165 4.222114 CAAGAGGCGTTGATGAAAAGAAC 58.778 43.478 0.00 0.00 0.00 3.01
165 166 3.476552 AGAGGCGTTGATGAAAAGAACA 58.523 40.909 0.00 0.00 0.00 3.18
166 167 3.499918 AGAGGCGTTGATGAAAAGAACAG 59.500 43.478 0.00 0.00 0.00 3.16
167 168 2.554032 AGGCGTTGATGAAAAGAACAGG 59.446 45.455 0.00 0.00 0.00 4.00
168 169 2.552315 GGCGTTGATGAAAAGAACAGGA 59.448 45.455 0.00 0.00 0.00 3.86
169 170 3.365364 GGCGTTGATGAAAAGAACAGGAG 60.365 47.826 0.00 0.00 0.00 3.69
170 171 3.814945 CGTTGATGAAAAGAACAGGAGC 58.185 45.455 0.00 0.00 0.00 4.70
171 172 3.250762 CGTTGATGAAAAGAACAGGAGCA 59.749 43.478 0.00 0.00 0.00 4.26
172 173 4.261155 CGTTGATGAAAAGAACAGGAGCAA 60.261 41.667 0.00 0.00 0.00 3.91
173 174 4.836125 TGATGAAAAGAACAGGAGCAAC 57.164 40.909 0.00 0.00 0.00 4.17
174 175 4.206375 TGATGAAAAGAACAGGAGCAACA 58.794 39.130 0.00 0.00 0.00 3.33
175 176 4.644234 TGATGAAAAGAACAGGAGCAACAA 59.356 37.500 0.00 0.00 0.00 2.83
176 177 5.126869 TGATGAAAAGAACAGGAGCAACAAA 59.873 36.000 0.00 0.00 0.00 2.83
177 178 4.997565 TGAAAAGAACAGGAGCAACAAAG 58.002 39.130 0.00 0.00 0.00 2.77
178 179 4.142182 TGAAAAGAACAGGAGCAACAAAGG 60.142 41.667 0.00 0.00 0.00 3.11
179 180 2.736670 AGAACAGGAGCAACAAAGGT 57.263 45.000 0.00 0.00 0.00 3.50
180 181 3.857157 AGAACAGGAGCAACAAAGGTA 57.143 42.857 0.00 0.00 0.00 3.08
181 182 4.373156 AGAACAGGAGCAACAAAGGTAT 57.627 40.909 0.00 0.00 0.00 2.73
182 183 5.499004 AGAACAGGAGCAACAAAGGTATA 57.501 39.130 0.00 0.00 0.00 1.47
183 184 6.067217 AGAACAGGAGCAACAAAGGTATAT 57.933 37.500 0.00 0.00 0.00 0.86
184 185 5.882557 AGAACAGGAGCAACAAAGGTATATG 59.117 40.000 0.00 0.00 0.00 1.78
185 186 5.435686 ACAGGAGCAACAAAGGTATATGA 57.564 39.130 0.00 0.00 0.00 2.15
186 187 5.815581 ACAGGAGCAACAAAGGTATATGAA 58.184 37.500 0.00 0.00 0.00 2.57
187 188 6.426587 ACAGGAGCAACAAAGGTATATGAAT 58.573 36.000 0.00 0.00 0.00 2.57
188 189 6.891908 ACAGGAGCAACAAAGGTATATGAATT 59.108 34.615 0.00 0.00 0.00 2.17
189 190 7.397192 ACAGGAGCAACAAAGGTATATGAATTT 59.603 33.333 0.00 0.00 0.00 1.82
190 191 7.703621 CAGGAGCAACAAAGGTATATGAATTTG 59.296 37.037 6.74 6.74 38.35 2.32
191 192 6.980397 GGAGCAACAAAGGTATATGAATTTGG 59.020 38.462 10.96 0.14 37.04 3.28
192 193 7.147915 GGAGCAACAAAGGTATATGAATTTGGA 60.148 37.037 10.96 0.00 37.04 3.53
193 194 7.775120 AGCAACAAAGGTATATGAATTTGGAG 58.225 34.615 10.96 6.00 37.04 3.86
194 195 6.476706 GCAACAAAGGTATATGAATTTGGAGC 59.523 38.462 10.96 10.08 37.04 4.70
195 196 6.715347 ACAAAGGTATATGAATTTGGAGCC 57.285 37.500 10.96 0.00 37.04 4.70
196 197 5.299279 ACAAAGGTATATGAATTTGGAGCCG 59.701 40.000 10.96 0.00 37.04 5.52
197 198 3.412386 AGGTATATGAATTTGGAGCCGC 58.588 45.455 0.00 0.00 0.00 6.53
198 199 2.488153 GGTATATGAATTTGGAGCCGCC 59.512 50.000 0.00 0.00 37.10 6.13
199 200 2.664402 ATATGAATTTGGAGCCGCCT 57.336 45.000 0.00 0.00 37.63 5.52
200 201 1.967319 TATGAATTTGGAGCCGCCTC 58.033 50.000 0.00 0.00 37.63 4.70
201 202 1.097547 ATGAATTTGGAGCCGCCTCG 61.098 55.000 0.00 0.00 39.06 4.63
202 203 1.745489 GAATTTGGAGCCGCCTCGT 60.745 57.895 0.00 0.00 39.06 4.18
262 263 1.531149 CAACAAATCAAGCCGTCTCGT 59.469 47.619 0.00 0.00 0.00 4.18
263 264 1.429463 ACAAATCAAGCCGTCTCGTC 58.571 50.000 0.00 0.00 0.00 4.20
271 272 1.812922 GCCGTCTCGTCGTCCTAGA 60.813 63.158 0.00 0.00 0.00 2.43
322 323 4.641645 CTGGGCTGCCGTTGGTGA 62.642 66.667 13.40 0.00 0.00 4.02
326 327 2.690778 GGCTGCCGTTGGTGATGAC 61.691 63.158 1.35 0.00 0.00 3.06
332 333 0.458543 CCGTTGGTGATGACTCCGAG 60.459 60.000 0.00 0.00 32.93 4.63
354 356 0.704664 GATGGGAGGGGTTTCCAGTT 59.295 55.000 0.00 0.00 39.09 3.16
375 377 2.496291 GGGCGTACCTAGGCATCGT 61.496 63.158 9.30 0.00 38.72 3.73
386 388 3.630148 GCATCGTCGTGGCCATCG 61.630 66.667 9.72 15.20 0.00 3.84
397 399 2.892425 GCCATCGAAGAGGTGCGG 60.892 66.667 0.00 0.00 43.63 5.69
398 400 2.579201 CCATCGAAGAGGTGCGGT 59.421 61.111 0.00 0.00 43.63 5.68
453 459 4.829518 CGAGGTCGCGACGCATGA 62.830 66.667 30.99 7.01 0.00 3.07
454 460 3.248171 GAGGTCGCGACGCATGAC 61.248 66.667 30.99 18.60 0.00 3.06
469 475 3.418068 GACGAGCAGGCACACAGC 61.418 66.667 0.00 0.00 44.65 4.40
515 522 4.095400 AGGCGTCCCCCATCTCCT 62.095 66.667 0.00 0.00 0.00 3.69
521 528 4.247380 CCCCCATCTCCTCGCTGC 62.247 72.222 0.00 0.00 0.00 5.25
557 564 1.432514 GTGTGAGCGCATCTCTTCAA 58.567 50.000 11.47 0.00 42.38 2.69
563 570 2.817423 CGCATCTCTTCAAGCCGGC 61.817 63.158 21.89 21.89 0.00 6.13
587 594 0.597568 CTTGCTGGCCAAATTCACGA 59.402 50.000 7.01 0.00 31.94 4.35
588 595 1.203052 CTTGCTGGCCAAATTCACGAT 59.797 47.619 7.01 0.00 31.94 3.73
593 600 3.278574 CTGGCCAAATTCACGATAAGGA 58.721 45.455 7.01 0.00 0.00 3.36
599 606 6.405842 GGCCAAATTCACGATAAGGAAGATTT 60.406 38.462 0.00 0.00 0.00 2.17
622 629 0.247460 CGGTGGTGCAGAGATGAAGA 59.753 55.000 0.00 0.00 0.00 2.87
626 633 1.827344 TGGTGCAGAGATGAAGACGAT 59.173 47.619 0.00 0.00 0.00 3.73
643 650 2.158505 ACGATCGAAGGGGAGGAATAGA 60.159 50.000 24.34 0.00 0.00 1.98
647 654 2.108168 CGAAGGGGAGGAATAGACACA 58.892 52.381 0.00 0.00 0.00 3.72
648 655 2.101582 CGAAGGGGAGGAATAGACACAG 59.898 54.545 0.00 0.00 0.00 3.66
665 672 2.098280 CACAGGATCGAGATCAGACGTT 59.902 50.000 14.21 0.00 39.54 3.99
666 673 3.312697 CACAGGATCGAGATCAGACGTTA 59.687 47.826 14.21 0.00 39.54 3.18
674 681 2.015587 AGATCAGACGTTACTCGGGTC 58.984 52.381 0.00 0.00 44.69 4.46
675 682 1.741706 GATCAGACGTTACTCGGGTCA 59.258 52.381 0.00 0.00 44.69 4.02
677 684 2.989909 TCAGACGTTACTCGGGTCATA 58.010 47.619 0.00 0.00 44.69 2.15
678 685 2.679837 TCAGACGTTACTCGGGTCATAC 59.320 50.000 0.00 0.00 44.69 2.39
679 686 2.421073 CAGACGTTACTCGGGTCATACA 59.579 50.000 0.00 0.00 44.69 2.29
680 687 3.084039 AGACGTTACTCGGGTCATACAA 58.916 45.455 0.00 0.00 44.69 2.41
688 695 7.253883 CGTTACTCGGGTCATACAATAGTTTTC 60.254 40.741 0.00 0.00 35.71 2.29
690 697 5.075858 TCGGGTCATACAATAGTTTTCGT 57.924 39.130 0.00 0.00 0.00 3.85
708 715 1.267532 CGTAATCTGCCACACGATTGC 60.268 52.381 0.00 0.00 36.53 3.56
722 729 7.592938 CCACACGATTGCCATATACATATTTT 58.407 34.615 0.00 0.00 0.00 1.82
787 794 2.429930 CCCGGCTCAAGTTCACCA 59.570 61.111 0.00 0.00 0.00 4.17
788 795 1.228124 CCCGGCTCAAGTTCACCAA 60.228 57.895 0.00 0.00 0.00 3.67
825 832 0.103876 AAAACCCTCCTCCCCTCTGT 60.104 55.000 0.00 0.00 0.00 3.41
959 966 2.095059 CGCTTTCATTTCACCCCTCTTG 60.095 50.000 0.00 0.00 0.00 3.02
1094 1101 0.253044 TTCTTGCCCATCTTCCTCCG 59.747 55.000 0.00 0.00 0.00 4.63
1113 1120 2.125673 CCGCCACCAGTTAGTCGG 60.126 66.667 0.00 0.00 0.00 4.79
1171 1179 4.148348 GCTGCTACCAATTATACGAGTTCG 59.852 45.833 0.00 0.00 46.33 3.95
1172 1180 5.503662 TGCTACCAATTATACGAGTTCGA 57.496 39.130 8.72 0.00 43.02 3.71
1178 1186 4.804139 CCAATTATACGAGTTCGAAGCACT 59.196 41.667 8.72 0.00 43.02 4.40
1199 1207 6.499172 CACTCGACAGATTAAATGCTCTAGA 58.501 40.000 0.00 0.00 0.00 2.43
1258 1266 1.334869 CTTTGCAGGGGCGCTATAAAG 59.665 52.381 18.45 18.45 45.35 1.85
1275 1283 6.641723 GCTATAAAGAGGGAAGTTATGTCGTC 59.358 42.308 0.00 0.00 0.00 4.20
1285 1293 5.458126 GGAAGTTATGTCGTCGGATCTTTAC 59.542 44.000 0.00 0.00 0.00 2.01
1377 1385 2.970324 GTGCGCACGAAGGAACCA 60.970 61.111 26.77 0.00 0.00 3.67
1394 1402 4.142227 GGAACCAGACGAGCTATTCTGTTA 60.142 45.833 18.38 0.00 38.06 2.41
1396 1404 5.000012 ACCAGACGAGCTATTCTGTTAAG 58.000 43.478 18.38 8.91 38.06 1.85
1397 1405 4.705507 ACCAGACGAGCTATTCTGTTAAGA 59.294 41.667 18.38 0.00 38.06 2.10
1399 1407 5.689514 CCAGACGAGCTATTCTGTTAAGATG 59.310 44.000 18.38 2.91 38.06 2.90
1440 1449 4.349503 AGATGCCCCAAGTGCGCA 62.350 61.111 5.66 5.66 36.84 6.09
1585 1594 3.616956 TCACAGCTAGATTGTCCTTGG 57.383 47.619 0.00 0.00 0.00 3.61
1597 1606 1.618837 TGTCCTTGGTAGTCAGCTGAC 59.381 52.381 34.82 34.82 45.08 3.51
1621 1630 5.512942 TGAATTATGGTTTGTCCTGGAGA 57.487 39.130 0.00 0.00 37.07 3.71
1678 1687 4.985538 TGGACTTGTAAGAATTGCTCCTT 58.014 39.130 0.00 0.00 0.00 3.36
1888 1898 2.667473 ATTGAAGGCGTTAGCGTACT 57.333 45.000 0.00 0.00 46.35 2.73
2115 2126 4.261801 CTCGTTTTGATTGGACAGGGTAT 58.738 43.478 0.00 0.00 0.00 2.73
2326 2339 1.843421 TGCCTGGCATATGGGTACC 59.157 57.895 19.30 2.17 41.71 3.34
2447 2460 8.706492 TTTTATTGCATTTGGAGCTAATTCTG 57.294 30.769 0.00 0.00 0.00 3.02
2589 2602 5.220472 CGCTTGATGTAAGTATCAACTGTGG 60.220 44.000 0.00 0.00 40.95 4.17
2615 2628 7.503902 GCTAAGTTTATTTCATCCCATCCTCTT 59.496 37.037 0.00 0.00 0.00 2.85
2635 2648 7.719633 TCCTCTTTGTGTCTTTTTAGCATTACT 59.280 33.333 0.00 0.00 0.00 2.24
2642 2656 9.290988 TGTGTCTTTTTAGCATTACTATTGGAA 57.709 29.630 0.00 0.00 0.00 3.53
2725 2739 7.613801 CCTGTAATCTGCTCTAGTACATATCCT 59.386 40.741 0.00 0.00 0.00 3.24
2805 2819 4.158764 GCAGAAAAGAGTAGAGGTAGAGCA 59.841 45.833 0.00 0.00 0.00 4.26
2872 2886 7.893124 ATCTGATGTTATTTTGCTGGATCTT 57.107 32.000 0.00 0.00 0.00 2.40
2944 2958 3.335579 GGAAACATGCCGAGTAAGTTCT 58.664 45.455 0.00 0.00 0.00 3.01
2954 2968 3.367395 CCGAGTAAGTTCTCAGCACATCA 60.367 47.826 0.00 0.00 34.46 3.07
3001 3015 2.128771 ATGGTGGCATTGTACTGACC 57.871 50.000 0.00 0.00 0.00 4.02
3002 3016 0.037590 TGGTGGCATTGTACTGACCC 59.962 55.000 0.00 0.00 0.00 4.46
3333 3363 9.664332 AAGCTATTTAATATGCATCTCGATCTT 57.336 29.630 0.19 0.00 0.00 2.40
3476 3668 8.115491 TCAAGTGATGTTTCTTATTATCGTCG 57.885 34.615 0.00 0.00 0.00 5.12
3650 3842 7.787725 ACCATCGGTTTCTATCTAAATGTTC 57.212 36.000 0.00 0.00 27.29 3.18
3928 4120 2.670414 GCTATCGCAATAGGTGATGCTC 59.330 50.000 0.00 0.00 45.99 4.26
3992 4184 4.882671 TCTTATCATTTTCTCTTGCGGC 57.117 40.909 0.00 0.00 0.00 6.53
4002 4194 7.877612 TCATTTTCTCTTGCGGCTATTATATCA 59.122 33.333 0.00 0.00 0.00 2.15
4013 4205 6.682113 GCGGCTATTATATCATACCGGAAGAA 60.682 42.308 9.46 0.00 39.53 2.52
4095 4288 9.941325 AAATGAGACATGCCATTTAAATTTACA 57.059 25.926 15.37 0.00 40.13 2.41
4155 4348 5.179533 GGGAAGTTGGAGAAGTCATAAGTC 58.820 45.833 0.00 0.00 0.00 3.01
4643 4836 5.954335 AGGTCTGCTGCATTGTTTTATAAC 58.046 37.500 1.31 0.00 34.75 1.89
4649 4842 6.673106 TGCTGCATTGTTTTATAACGAAAGA 58.327 32.000 0.00 0.00 37.06 2.52
4726 4919 2.037251 AGTGACTGCAGATGGTAAACGT 59.963 45.455 23.35 0.00 0.00 3.99
4804 4997 5.823209 TGATCCAATTTGCTCATGTAGTG 57.177 39.130 0.00 0.00 0.00 2.74
4805 4998 5.255687 TGATCCAATTTGCTCATGTAGTGT 58.744 37.500 0.00 0.00 0.00 3.55
4806 4999 5.124297 TGATCCAATTTGCTCATGTAGTGTG 59.876 40.000 0.00 0.00 0.00 3.82
4807 5000 4.397420 TCCAATTTGCTCATGTAGTGTGT 58.603 39.130 0.00 0.00 0.00 3.72
4808 5001 4.216042 TCCAATTTGCTCATGTAGTGTGTG 59.784 41.667 0.00 0.00 0.00 3.82
4839 5032 2.597217 ATTGTGGCCACGTGGGTG 60.597 61.111 34.58 11.39 43.99 4.61
4842 5035 4.250305 GTGGCCACGTGGGTGTCT 62.250 66.667 34.58 0.00 42.80 3.41
4907 5100 8.711457 GTTAATCCTTTGTCAAAATTGGACATG 58.289 33.333 3.76 1.14 44.11 3.21
4962 5155 4.287067 TGCCTCCAGTTTGTCTAAGAAGAT 59.713 41.667 0.00 0.00 33.30 2.40
5104 5298 0.623723 TCTACCCATGGTTGAAGCCC 59.376 55.000 11.73 0.00 34.82 5.19
5107 5301 2.035626 CCATGGTTGAAGCCCGGT 59.964 61.111 2.57 0.00 0.00 5.28
5149 5343 4.675190 ACGAGCACATCTTTTTGATCAG 57.325 40.909 0.00 0.00 32.05 2.90
5182 5376 1.649390 CGGTGTCGACTCTCCAGAGG 61.649 65.000 17.92 1.07 46.13 3.69
5191 5385 2.747855 CTCCAGAGGCCAAACCGC 60.748 66.667 5.01 0.00 46.52 5.68
5204 5398 1.000717 CAAACCGCGTGGATTTTCCTT 60.001 47.619 24.59 0.00 37.46 3.36
5247 5441 6.811954 ACCATTGTTCTTTTTACCGAATGTT 58.188 32.000 0.00 0.00 0.00 2.71
5261 5455 3.367190 CCGAATGTTGATCATTTGTGCCA 60.367 43.478 0.00 0.00 45.49 4.92
5330 5524 3.973305 TGTCCTCCCATTATGCTATGTCA 59.027 43.478 0.00 0.00 0.00 3.58
5341 5535 7.443272 CCATTATGCTATGTCATGAGAGTCAAA 59.557 37.037 0.00 0.00 0.00 2.69
5420 7880 3.983410 AGGTCCTCCCATTATGCTATGTT 59.017 43.478 0.00 0.00 34.66 2.71
5421 7881 4.042187 AGGTCCTCCCATTATGCTATGTTC 59.958 45.833 0.00 0.00 34.66 3.18
5422 7882 4.202461 GGTCCTCCCATTATGCTATGTTCA 60.202 45.833 0.00 0.00 0.00 3.18
5423 7883 5.376625 GTCCTCCCATTATGCTATGTTCAA 58.623 41.667 0.00 0.00 0.00 2.69
5424 7884 6.006449 GTCCTCCCATTATGCTATGTTCAAT 58.994 40.000 0.00 0.00 0.00 2.57
5444 7915 9.692749 GTTCAATCGACTGGTGATAATAAGATA 57.307 33.333 0.00 0.00 0.00 1.98
5470 7941 7.935338 AAAAATATGAGTGCAGTGAAAACTG 57.065 32.000 0.00 1.45 40.51 3.16
5473 7944 1.401552 TGAGTGCAGTGAAAACTGTGC 59.598 47.619 0.00 1.77 39.76 4.57
5475 7946 0.592247 GTGCAGTGAAAACTGTGCCG 60.592 55.000 7.63 0.00 39.76 5.69
5505 7976 3.110613 ACAGAATGGAAACGAAGCGCG 62.111 52.381 0.00 0.00 43.62 6.86
5561 8032 4.953579 TGGAAGTGGCAACTTAAGTTTCTT 59.046 37.500 18.25 17.57 46.84 2.52
5668 8141 6.723298 TTGTTGTTTTGTCTATGTCCCAAT 57.277 33.333 0.00 0.00 0.00 3.16
5681 8154 7.993183 GTCTATGTCCCAATGGAGATTTTTAGA 59.007 37.037 0.00 0.00 41.73 2.10
5682 8155 8.213679 TCTATGTCCCAATGGAGATTTTTAGAG 58.786 37.037 0.00 0.00 41.73 2.43
5701 8602 3.186613 AGAGCTAAAAACCTCGCTTTTCG 59.813 43.478 0.00 0.00 40.15 3.46
5736 8638 4.201920 GCACTGAACTTCTCTTTCCGTTTT 60.202 41.667 0.00 0.00 0.00 2.43
5750 8652 6.369615 TCTTTCCGTTTTCCCTAAAAGATACG 59.630 38.462 0.00 0.00 35.29 3.06
5752 8654 4.020307 TCCGTTTTCCCTAAAAGATACGGT 60.020 41.667 0.00 0.00 44.00 4.83
5759 8661 5.271598 TCCCTAAAAGATACGGTCCACTTA 58.728 41.667 0.00 0.00 0.00 2.24
5760 8662 5.721000 TCCCTAAAAGATACGGTCCACTTAA 59.279 40.000 0.00 0.00 0.00 1.85
5779 8687 7.277539 CCACTTAAGCTCTGTTTTCATCTCTAG 59.722 40.741 1.29 0.00 0.00 2.43
5831 8740 2.281761 AAGCCTCGGGTGCAACTG 60.282 61.111 3.42 3.42 36.74 3.16
5844 8755 3.067461 GGTGCAACTGGTGACATTTTACA 59.933 43.478 0.00 0.00 41.51 2.41
5854 8765 5.941948 GTGACATTTTACACCAGCTTACT 57.058 39.130 0.00 0.00 0.00 2.24
5861 8772 6.569179 TTTTACACCAGCTTACTCCATTTC 57.431 37.500 0.00 0.00 0.00 2.17
5894 11974 3.739209 GCAGAAAAGCTTCTTGCAAACCT 60.739 43.478 19.08 0.00 45.94 3.50
5895 11975 4.436332 CAGAAAAGCTTCTTGCAAACCTT 58.564 39.130 0.00 0.00 45.94 3.50
5896 11976 4.269363 CAGAAAAGCTTCTTGCAAACCTTG 59.731 41.667 0.00 0.00 45.94 3.61
6055 12147 6.781014 TGTACATTATAGAAGGGGAGAACGAT 59.219 38.462 0.00 0.00 0.00 3.73
6102 12202 6.542821 ACTGAATTCAACCAGTGAGGAATAA 58.457 36.000 9.88 0.00 41.59 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.683211 AAGGCTCCAACCAAATCACT 57.317 45.000 0.00 0.00 0.00 3.41
1 2 3.181466 ACAAAAGGCTCCAACCAAATCAC 60.181 43.478 0.00 0.00 0.00 3.06
2 3 3.037549 ACAAAAGGCTCCAACCAAATCA 58.962 40.909 0.00 0.00 0.00 2.57
3 4 3.751479 ACAAAAGGCTCCAACCAAATC 57.249 42.857 0.00 0.00 0.00 2.17
4 5 4.223144 ACTACAAAAGGCTCCAACCAAAT 58.777 39.130 0.00 0.00 0.00 2.32
5 6 3.634910 GACTACAAAAGGCTCCAACCAAA 59.365 43.478 0.00 0.00 0.00 3.28
6 7 3.219281 GACTACAAAAGGCTCCAACCAA 58.781 45.455 0.00 0.00 0.00 3.67
7 8 2.488347 GGACTACAAAAGGCTCCAACCA 60.488 50.000 0.00 0.00 31.67 3.67
8 9 2.160205 GGACTACAAAAGGCTCCAACC 58.840 52.381 0.00 0.00 31.67 3.77
9 10 1.804748 CGGACTACAAAAGGCTCCAAC 59.195 52.381 0.00 0.00 31.67 3.77
10 11 1.418637 ACGGACTACAAAAGGCTCCAA 59.581 47.619 0.00 0.00 31.67 3.53
11 12 1.001633 GACGGACTACAAAAGGCTCCA 59.998 52.381 0.00 0.00 31.67 3.86
12 13 1.723220 GACGGACTACAAAAGGCTCC 58.277 55.000 0.00 0.00 31.67 4.70
13 14 1.347320 CGACGGACTACAAAAGGCTC 58.653 55.000 0.00 0.00 31.67 4.70
14 15 0.037605 CCGACGGACTACAAAAGGCT 60.038 55.000 8.64 0.00 31.67 4.58
15 16 0.320160 ACCGACGGACTACAAAAGGC 60.320 55.000 23.38 0.00 0.00 4.35
16 17 1.000060 TGACCGACGGACTACAAAAGG 60.000 52.381 23.38 0.00 0.00 3.11
17 18 2.427232 TGACCGACGGACTACAAAAG 57.573 50.000 23.38 0.00 0.00 2.27
18 19 2.679450 CATGACCGACGGACTACAAAA 58.321 47.619 23.38 0.00 0.00 2.44
19 20 1.670674 GCATGACCGACGGACTACAAA 60.671 52.381 23.38 0.00 0.00 2.83
20 21 0.108992 GCATGACCGACGGACTACAA 60.109 55.000 23.38 0.00 0.00 2.41
21 22 1.245376 TGCATGACCGACGGACTACA 61.245 55.000 23.38 14.59 0.00 2.74
22 23 0.108992 TTGCATGACCGACGGACTAC 60.109 55.000 23.38 8.74 0.00 2.73
23 24 0.172578 CTTGCATGACCGACGGACTA 59.827 55.000 23.38 6.41 0.00 2.59
24 25 1.079819 CTTGCATGACCGACGGACT 60.080 57.895 23.38 0.00 0.00 3.85
25 26 0.108992 TACTTGCATGACCGACGGAC 60.109 55.000 23.38 16.03 0.00 4.79
26 27 0.604073 TTACTTGCATGACCGACGGA 59.396 50.000 23.38 0.00 0.00 4.69
27 28 0.719465 GTTACTTGCATGACCGACGG 59.281 55.000 13.61 13.61 0.00 4.79
28 29 0.719465 GGTTACTTGCATGACCGACG 59.281 55.000 6.60 0.00 0.00 5.12
32 33 1.467342 GGTTCGGTTACTTGCATGACC 59.533 52.381 6.60 3.64 0.00 4.02
33 34 2.159627 CAGGTTCGGTTACTTGCATGAC 59.840 50.000 6.60 0.00 0.00 3.06
34 35 2.037902 TCAGGTTCGGTTACTTGCATGA 59.962 45.455 6.60 0.00 0.00 3.07
35 36 2.422597 TCAGGTTCGGTTACTTGCATG 58.577 47.619 0.00 0.00 0.00 4.06
36 37 2.851263 TCAGGTTCGGTTACTTGCAT 57.149 45.000 0.00 0.00 0.00 3.96
37 38 2.811431 CAATCAGGTTCGGTTACTTGCA 59.189 45.455 0.00 0.00 0.00 4.08
38 39 2.812011 ACAATCAGGTTCGGTTACTTGC 59.188 45.455 0.00 0.00 0.00 4.01
39 40 6.370442 TCATTACAATCAGGTTCGGTTACTTG 59.630 38.462 0.00 0.00 0.00 3.16
40 41 6.469410 TCATTACAATCAGGTTCGGTTACTT 58.531 36.000 0.00 0.00 0.00 2.24
41 42 6.045072 TCATTACAATCAGGTTCGGTTACT 57.955 37.500 0.00 0.00 0.00 2.24
42 43 6.920569 ATCATTACAATCAGGTTCGGTTAC 57.079 37.500 0.00 0.00 0.00 2.50
43 44 8.262227 ACTAATCATTACAATCAGGTTCGGTTA 58.738 33.333 0.00 0.00 0.00 2.85
44 45 7.110155 ACTAATCATTACAATCAGGTTCGGTT 58.890 34.615 0.00 0.00 0.00 4.44
45 46 6.650120 ACTAATCATTACAATCAGGTTCGGT 58.350 36.000 0.00 0.00 0.00 4.69
46 47 6.986817 AGACTAATCATTACAATCAGGTTCGG 59.013 38.462 0.00 0.00 0.00 4.30
47 48 9.698309 ATAGACTAATCATTACAATCAGGTTCG 57.302 33.333 0.00 0.00 0.00 3.95
53 54 9.778741 GGGTGAATAGACTAATCATTACAATCA 57.221 33.333 3.59 0.00 0.00 2.57
54 55 9.778741 TGGGTGAATAGACTAATCATTACAATC 57.221 33.333 3.59 0.00 0.00 2.67
56 57 9.613428 CTTGGGTGAATAGACTAATCATTACAA 57.387 33.333 3.59 8.29 0.00 2.41
57 58 7.715249 GCTTGGGTGAATAGACTAATCATTACA 59.285 37.037 3.59 1.73 0.00 2.41
58 59 7.934120 AGCTTGGGTGAATAGACTAATCATTAC 59.066 37.037 3.59 0.00 0.00 1.89
59 60 8.034313 AGCTTGGGTGAATAGACTAATCATTA 57.966 34.615 3.59 0.00 0.00 1.90
60 61 6.904626 AGCTTGGGTGAATAGACTAATCATT 58.095 36.000 3.59 0.00 0.00 2.57
61 62 6.506538 AGCTTGGGTGAATAGACTAATCAT 57.493 37.500 3.59 0.00 0.00 2.45
62 63 5.957771 AGCTTGGGTGAATAGACTAATCA 57.042 39.130 0.00 0.00 0.00 2.57
63 64 6.349300 TGAAGCTTGGGTGAATAGACTAATC 58.651 40.000 2.10 0.00 0.00 1.75
64 65 6.156949 TCTGAAGCTTGGGTGAATAGACTAAT 59.843 38.462 2.10 0.00 0.00 1.73
65 66 5.483937 TCTGAAGCTTGGGTGAATAGACTAA 59.516 40.000 2.10 0.00 0.00 2.24
66 67 5.023452 TCTGAAGCTTGGGTGAATAGACTA 58.977 41.667 2.10 0.00 0.00 2.59
67 68 3.840666 TCTGAAGCTTGGGTGAATAGACT 59.159 43.478 2.10 0.00 0.00 3.24
68 69 3.935828 GTCTGAAGCTTGGGTGAATAGAC 59.064 47.826 2.10 1.32 0.00 2.59
69 70 3.582647 TGTCTGAAGCTTGGGTGAATAGA 59.417 43.478 2.10 0.00 0.00 1.98
70 71 3.942829 TGTCTGAAGCTTGGGTGAATAG 58.057 45.455 2.10 0.00 0.00 1.73
71 72 4.072131 GTTGTCTGAAGCTTGGGTGAATA 58.928 43.478 2.10 0.00 0.00 1.75
72 73 2.887152 GTTGTCTGAAGCTTGGGTGAAT 59.113 45.455 2.10 0.00 0.00 2.57
73 74 2.297701 GTTGTCTGAAGCTTGGGTGAA 58.702 47.619 2.10 0.00 0.00 3.18
74 75 1.211703 TGTTGTCTGAAGCTTGGGTGA 59.788 47.619 2.10 0.00 0.00 4.02
75 76 1.334869 GTGTTGTCTGAAGCTTGGGTG 59.665 52.381 2.10 0.00 0.00 4.61
76 77 1.212935 AGTGTTGTCTGAAGCTTGGGT 59.787 47.619 2.10 0.00 0.00 4.51
77 78 1.605710 CAGTGTTGTCTGAAGCTTGGG 59.394 52.381 2.10 0.00 37.61 4.12
78 79 2.564771 TCAGTGTTGTCTGAAGCTTGG 58.435 47.619 2.10 0.00 40.82 3.61
85 86 5.991606 CCTTGTAAGATTCAGTGTTGTCTGA 59.008 40.000 0.00 0.00 41.85 3.27
86 87 5.180117 CCCTTGTAAGATTCAGTGTTGTCTG 59.820 44.000 0.00 0.00 36.85 3.51
87 88 5.308825 CCCTTGTAAGATTCAGTGTTGTCT 58.691 41.667 0.00 0.00 0.00 3.41
88 89 4.455877 CCCCTTGTAAGATTCAGTGTTGTC 59.544 45.833 0.00 0.00 0.00 3.18
89 90 4.141251 ACCCCTTGTAAGATTCAGTGTTGT 60.141 41.667 0.00 0.00 0.00 3.32
90 91 4.398319 ACCCCTTGTAAGATTCAGTGTTG 58.602 43.478 0.00 0.00 0.00 3.33
91 92 4.724279 ACCCCTTGTAAGATTCAGTGTT 57.276 40.909 0.00 0.00 0.00 3.32
92 93 4.398319 CAACCCCTTGTAAGATTCAGTGT 58.602 43.478 0.00 0.00 0.00 3.55
93 94 3.191371 GCAACCCCTTGTAAGATTCAGTG 59.809 47.826 0.00 0.00 0.00 3.66
94 95 3.421844 GCAACCCCTTGTAAGATTCAGT 58.578 45.455 0.00 0.00 0.00 3.41
95 96 2.420022 CGCAACCCCTTGTAAGATTCAG 59.580 50.000 0.00 0.00 0.00 3.02
96 97 2.039216 TCGCAACCCCTTGTAAGATTCA 59.961 45.455 0.00 0.00 0.00 2.57
97 98 2.418976 GTCGCAACCCCTTGTAAGATTC 59.581 50.000 0.00 0.00 0.00 2.52
98 99 2.224670 TGTCGCAACCCCTTGTAAGATT 60.225 45.455 0.00 0.00 0.00 2.40
99 100 1.349688 TGTCGCAACCCCTTGTAAGAT 59.650 47.619 0.00 0.00 0.00 2.40
100 101 0.759959 TGTCGCAACCCCTTGTAAGA 59.240 50.000 0.00 0.00 0.00 2.10
101 102 1.156736 CTGTCGCAACCCCTTGTAAG 58.843 55.000 0.00 0.00 0.00 2.34
102 103 0.759959 TCTGTCGCAACCCCTTGTAA 59.240 50.000 0.00 0.00 0.00 2.41
103 104 0.320374 CTCTGTCGCAACCCCTTGTA 59.680 55.000 0.00 0.00 0.00 2.41
104 105 1.071471 CTCTGTCGCAACCCCTTGT 59.929 57.895 0.00 0.00 0.00 3.16
105 106 0.671781 CTCTCTGTCGCAACCCCTTG 60.672 60.000 0.00 0.00 0.00 3.61
106 107 1.674057 CTCTCTGTCGCAACCCCTT 59.326 57.895 0.00 0.00 0.00 3.95
107 108 2.286523 CCTCTCTGTCGCAACCCCT 61.287 63.158 0.00 0.00 0.00 4.79
108 109 2.266055 CCTCTCTGTCGCAACCCC 59.734 66.667 0.00 0.00 0.00 4.95
109 110 1.374758 CACCTCTCTGTCGCAACCC 60.375 63.158 0.00 0.00 0.00 4.11
110 111 0.389166 CTCACCTCTCTGTCGCAACC 60.389 60.000 0.00 0.00 0.00 3.77
111 112 1.011451 GCTCACCTCTCTGTCGCAAC 61.011 60.000 0.00 0.00 0.00 4.17
112 113 1.290324 GCTCACCTCTCTGTCGCAA 59.710 57.895 0.00 0.00 0.00 4.85
113 114 1.871126 CTGCTCACCTCTCTGTCGCA 61.871 60.000 0.00 0.00 0.00 5.10
114 115 1.153862 CTGCTCACCTCTCTGTCGC 60.154 63.158 0.00 0.00 0.00 5.19
115 116 1.153862 GCTGCTCACCTCTCTGTCG 60.154 63.158 0.00 0.00 0.00 4.35
116 117 0.319728 TTGCTGCTCACCTCTCTGTC 59.680 55.000 0.00 0.00 0.00 3.51
117 118 0.034616 GTTGCTGCTCACCTCTCTGT 59.965 55.000 0.00 0.00 0.00 3.41
118 119 0.034476 TGTTGCTGCTCACCTCTCTG 59.966 55.000 0.00 0.00 0.00 3.35
119 120 0.761187 TTGTTGCTGCTCACCTCTCT 59.239 50.000 0.00 0.00 0.00 3.10
120 121 0.871057 GTTGTTGCTGCTCACCTCTC 59.129 55.000 0.00 0.00 0.00 3.20
121 122 0.181114 TGTTGTTGCTGCTCACCTCT 59.819 50.000 0.00 0.00 0.00 3.69
122 123 0.590195 CTGTTGTTGCTGCTCACCTC 59.410 55.000 0.00 0.00 0.00 3.85
123 124 1.450531 GCTGTTGTTGCTGCTCACCT 61.451 55.000 0.00 0.00 0.00 4.00
124 125 1.008079 GCTGTTGTTGCTGCTCACC 60.008 57.895 0.00 0.00 0.00 4.02
125 126 0.101040 TTGCTGTTGTTGCTGCTCAC 59.899 50.000 0.00 0.00 34.93 3.51
126 127 0.382873 CTTGCTGTTGTTGCTGCTCA 59.617 50.000 0.00 0.00 34.93 4.26
127 128 0.664761 TCTTGCTGTTGTTGCTGCTC 59.335 50.000 0.00 0.00 34.93 4.26
128 129 0.666913 CTCTTGCTGTTGTTGCTGCT 59.333 50.000 0.00 0.00 34.93 4.24
129 130 0.318445 CCTCTTGCTGTTGTTGCTGC 60.318 55.000 0.00 0.00 0.00 5.25
130 131 0.318445 GCCTCTTGCTGTTGTTGCTG 60.318 55.000 0.00 0.00 36.87 4.41
131 132 1.789078 CGCCTCTTGCTGTTGTTGCT 61.789 55.000 0.00 0.00 38.05 3.91
132 133 1.370900 CGCCTCTTGCTGTTGTTGC 60.371 57.895 0.00 0.00 38.05 4.17
133 134 0.381801 AACGCCTCTTGCTGTTGTTG 59.618 50.000 0.00 0.00 36.07 3.33
134 135 0.381801 CAACGCCTCTTGCTGTTGTT 59.618 50.000 11.14 0.00 43.29 2.83
135 136 0.463654 TCAACGCCTCTTGCTGTTGT 60.464 50.000 15.73 0.00 45.78 3.32
136 137 0.877071 ATCAACGCCTCTTGCTGTTG 59.123 50.000 12.37 12.37 46.38 3.33
137 138 0.877071 CATCAACGCCTCTTGCTGTT 59.123 50.000 0.00 0.00 37.24 3.16
138 139 0.035317 TCATCAACGCCTCTTGCTGT 59.965 50.000 0.00 0.00 38.05 4.40
139 140 1.159285 TTCATCAACGCCTCTTGCTG 58.841 50.000 0.00 0.00 38.05 4.41
140 141 1.896220 TTTCATCAACGCCTCTTGCT 58.104 45.000 0.00 0.00 38.05 3.91
141 142 2.226437 TCTTTTCATCAACGCCTCTTGC 59.774 45.455 0.00 0.00 0.00 4.01
142 143 4.222114 GTTCTTTTCATCAACGCCTCTTG 58.778 43.478 0.00 0.00 0.00 3.02
143 144 3.882888 TGTTCTTTTCATCAACGCCTCTT 59.117 39.130 0.00 0.00 0.00 2.85
144 145 3.476552 TGTTCTTTTCATCAACGCCTCT 58.523 40.909 0.00 0.00 0.00 3.69
145 146 3.365364 CCTGTTCTTTTCATCAACGCCTC 60.365 47.826 0.00 0.00 0.00 4.70
146 147 2.554032 CCTGTTCTTTTCATCAACGCCT 59.446 45.455 0.00 0.00 0.00 5.52
147 148 2.552315 TCCTGTTCTTTTCATCAACGCC 59.448 45.455 0.00 0.00 0.00 5.68
148 149 3.814945 CTCCTGTTCTTTTCATCAACGC 58.185 45.455 0.00 0.00 0.00 4.84
149 150 3.250762 TGCTCCTGTTCTTTTCATCAACG 59.749 43.478 0.00 0.00 0.00 4.10
150 151 4.836125 TGCTCCTGTTCTTTTCATCAAC 57.164 40.909 0.00 0.00 0.00 3.18
151 152 4.644234 TGTTGCTCCTGTTCTTTTCATCAA 59.356 37.500 0.00 0.00 0.00 2.57
152 153 4.206375 TGTTGCTCCTGTTCTTTTCATCA 58.794 39.130 0.00 0.00 0.00 3.07
153 154 4.836125 TGTTGCTCCTGTTCTTTTCATC 57.164 40.909 0.00 0.00 0.00 2.92
154 155 5.452356 CCTTTGTTGCTCCTGTTCTTTTCAT 60.452 40.000 0.00 0.00 0.00 2.57
155 156 4.142182 CCTTTGTTGCTCCTGTTCTTTTCA 60.142 41.667 0.00 0.00 0.00 2.69
156 157 4.142160 ACCTTTGTTGCTCCTGTTCTTTTC 60.142 41.667 0.00 0.00 0.00 2.29
157 158 3.769300 ACCTTTGTTGCTCCTGTTCTTTT 59.231 39.130 0.00 0.00 0.00 2.27
158 159 3.365472 ACCTTTGTTGCTCCTGTTCTTT 58.635 40.909 0.00 0.00 0.00 2.52
159 160 3.018423 ACCTTTGTTGCTCCTGTTCTT 57.982 42.857 0.00 0.00 0.00 2.52
160 161 2.736670 ACCTTTGTTGCTCCTGTTCT 57.263 45.000 0.00 0.00 0.00 3.01
161 162 5.880332 TCATATACCTTTGTTGCTCCTGTTC 59.120 40.000 0.00 0.00 0.00 3.18
162 163 5.815581 TCATATACCTTTGTTGCTCCTGTT 58.184 37.500 0.00 0.00 0.00 3.16
163 164 5.435686 TCATATACCTTTGTTGCTCCTGT 57.564 39.130 0.00 0.00 0.00 4.00
164 165 6.949352 ATTCATATACCTTTGTTGCTCCTG 57.051 37.500 0.00 0.00 0.00 3.86
165 166 7.147846 CCAAATTCATATACCTTTGTTGCTCCT 60.148 37.037 0.00 0.00 0.00 3.69
166 167 6.980397 CCAAATTCATATACCTTTGTTGCTCC 59.020 38.462 0.00 0.00 0.00 4.70
167 168 7.771183 TCCAAATTCATATACCTTTGTTGCTC 58.229 34.615 0.00 0.00 0.00 4.26
168 169 7.631377 GCTCCAAATTCATATACCTTTGTTGCT 60.631 37.037 0.00 0.00 0.00 3.91
169 170 6.476706 GCTCCAAATTCATATACCTTTGTTGC 59.523 38.462 0.00 0.00 0.00 4.17
170 171 6.980397 GGCTCCAAATTCATATACCTTTGTTG 59.020 38.462 0.00 0.00 0.00 3.33
171 172 6.183360 CGGCTCCAAATTCATATACCTTTGTT 60.183 38.462 0.00 0.00 0.00 2.83
172 173 5.299279 CGGCTCCAAATTCATATACCTTTGT 59.701 40.000 0.00 0.00 0.00 2.83
173 174 5.762045 CGGCTCCAAATTCATATACCTTTG 58.238 41.667 0.00 0.00 0.00 2.77
174 175 4.278419 GCGGCTCCAAATTCATATACCTTT 59.722 41.667 0.00 0.00 0.00 3.11
175 176 3.821033 GCGGCTCCAAATTCATATACCTT 59.179 43.478 0.00 0.00 0.00 3.50
176 177 3.412386 GCGGCTCCAAATTCATATACCT 58.588 45.455 0.00 0.00 0.00 3.08
177 178 2.488153 GGCGGCTCCAAATTCATATACC 59.512 50.000 0.00 0.00 34.01 2.73
178 179 3.412386 AGGCGGCTCCAAATTCATATAC 58.588 45.455 5.25 0.00 37.29 1.47
179 180 3.674997 GAGGCGGCTCCAAATTCATATA 58.325 45.455 27.54 0.00 37.29 0.86
180 181 2.508526 GAGGCGGCTCCAAATTCATAT 58.491 47.619 27.54 0.00 37.29 1.78
181 182 1.810031 CGAGGCGGCTCCAAATTCATA 60.810 52.381 30.76 0.00 37.29 2.15
182 183 1.097547 CGAGGCGGCTCCAAATTCAT 61.098 55.000 30.76 0.00 37.29 2.57
183 184 1.745115 CGAGGCGGCTCCAAATTCA 60.745 57.895 30.76 0.00 37.29 2.57
184 185 1.305930 AACGAGGCGGCTCCAAATTC 61.306 55.000 30.76 7.72 37.29 2.17
185 186 1.303317 AACGAGGCGGCTCCAAATT 60.303 52.632 30.76 17.75 37.29 1.82
186 187 2.040544 CAACGAGGCGGCTCCAAAT 61.041 57.895 30.76 12.97 37.29 2.32
187 188 2.668212 CAACGAGGCGGCTCCAAA 60.668 61.111 30.76 0.00 37.29 3.28
228 229 9.424659 GCTTGATTTGTTGTTGTTTTTAGATTG 57.575 29.630 0.00 0.00 0.00 2.67
230 231 7.042791 CGGCTTGATTTGTTGTTGTTTTTAGAT 60.043 33.333 0.00 0.00 0.00 1.98
231 232 6.254589 CGGCTTGATTTGTTGTTGTTTTTAGA 59.745 34.615 0.00 0.00 0.00 2.10
232 233 6.035542 ACGGCTTGATTTGTTGTTGTTTTTAG 59.964 34.615 0.00 0.00 0.00 1.85
233 234 5.869888 ACGGCTTGATTTGTTGTTGTTTTTA 59.130 32.000 0.00 0.00 0.00 1.52
262 263 2.156917 TCGTTTTGCTCTCTAGGACGA 58.843 47.619 0.00 0.00 35.93 4.20
263 264 2.520979 CTCGTTTTGCTCTCTAGGACG 58.479 52.381 0.00 0.00 0.00 4.79
271 272 0.304705 CGTTGTGCTCGTTTTGCTCT 59.695 50.000 0.00 0.00 0.00 4.09
313 314 0.458543 CTCGGAGTCATCACCAACGG 60.459 60.000 0.00 0.00 0.00 4.44
322 323 0.558220 TCCCATCTCCTCGGAGTCAT 59.442 55.000 12.43 0.00 42.49 3.06
326 327 1.532794 CCCTCCCATCTCCTCGGAG 60.533 68.421 6.63 6.63 42.48 4.63
332 333 0.919289 TGGAAACCCCTCCCATCTCC 60.919 60.000 0.00 0.00 34.22 3.71
354 356 1.075525 ATGCCTAGGTACGCCCAGA 60.076 57.895 11.31 0.00 34.66 3.86
375 377 1.982395 ACCTCTTCGATGGCCACGA 60.982 57.895 21.41 21.41 37.99 4.35
386 388 1.216710 CCTCTCACCGCACCTCTTC 59.783 63.158 0.00 0.00 0.00 2.87
444 450 3.250323 CCTGCTCGTCATGCGTCG 61.250 66.667 8.91 4.41 42.13 5.12
446 452 4.377708 TGCCTGCTCGTCATGCGT 62.378 61.111 8.91 0.00 38.89 5.24
463 469 1.301244 CTTCGCTGACAGGCTGTGT 60.301 57.895 27.45 0.70 44.49 3.72
469 475 3.114616 CCACGCTTCGCTGACAGG 61.115 66.667 4.26 0.00 0.00 4.00
494 501 4.195334 GATGGGGGACGCCTGCAT 62.195 66.667 8.66 4.31 42.25 3.96
506 513 4.598894 CCGCAGCGAGGAGATGGG 62.599 72.222 18.75 0.00 46.90 4.00
534 541 1.153939 GAGATGCGCTCACACGTCT 60.154 57.895 9.73 0.43 43.38 4.18
536 543 0.734253 GAAGAGATGCGCTCACACGT 60.734 55.000 9.73 0.00 46.45 4.49
537 544 0.733909 TGAAGAGATGCGCTCACACG 60.734 55.000 9.73 0.00 46.45 4.49
539 546 1.718396 CTTGAAGAGATGCGCTCACA 58.282 50.000 9.73 0.00 46.45 3.58
540 547 0.373024 GCTTGAAGAGATGCGCTCAC 59.627 55.000 9.73 2.48 46.45 3.51
573 580 3.358111 TCCTTATCGTGAATTTGGCCA 57.642 42.857 0.00 0.00 0.00 5.36
582 589 4.988540 CCGCATAAATCTTCCTTATCGTGA 59.011 41.667 0.00 0.00 0.00 4.35
587 594 4.821805 CACCACCGCATAAATCTTCCTTAT 59.178 41.667 0.00 0.00 0.00 1.73
588 595 4.196193 CACCACCGCATAAATCTTCCTTA 58.804 43.478 0.00 0.00 0.00 2.69
593 600 1.745087 CTGCACCACCGCATAAATCTT 59.255 47.619 0.00 0.00 42.06 2.40
599 606 0.179076 CATCTCTGCACCACCGCATA 60.179 55.000 0.00 0.00 42.06 3.14
612 619 2.621055 CCCTTCGATCGTCTTCATCTCT 59.379 50.000 15.94 0.00 0.00 3.10
614 621 1.683917 CCCCTTCGATCGTCTTCATCT 59.316 52.381 15.94 0.00 0.00 2.90
622 629 2.158505 TCTATTCCTCCCCTTCGATCGT 60.159 50.000 15.94 0.00 0.00 3.73
626 633 2.291996 TGTGTCTATTCCTCCCCTTCGA 60.292 50.000 0.00 0.00 0.00 3.71
643 650 1.673400 CGTCTGATCTCGATCCTGTGT 59.327 52.381 4.58 0.00 37.02 3.72
647 654 3.810941 GAGTAACGTCTGATCTCGATCCT 59.189 47.826 11.10 4.80 37.02 3.24
648 655 3.363182 CGAGTAACGTCTGATCTCGATCC 60.363 52.174 16.63 0.00 46.92 3.36
665 672 6.127647 ACGAAAACTATTGTATGACCCGAGTA 60.128 38.462 0.00 0.00 0.00 2.59
666 673 5.107133 CGAAAACTATTGTATGACCCGAGT 58.893 41.667 0.00 0.00 0.00 4.18
674 681 7.850982 GTGGCAGATTACGAAAACTATTGTATG 59.149 37.037 0.00 0.00 0.00 2.39
675 682 7.551262 TGTGGCAGATTACGAAAACTATTGTAT 59.449 33.333 0.00 0.00 0.00 2.29
677 684 5.703592 TGTGGCAGATTACGAAAACTATTGT 59.296 36.000 0.00 0.00 0.00 2.71
678 685 6.021596 GTGTGGCAGATTACGAAAACTATTG 58.978 40.000 0.00 0.00 0.00 1.90
679 686 5.163893 CGTGTGGCAGATTACGAAAACTATT 60.164 40.000 7.48 0.00 38.72 1.73
680 687 4.328983 CGTGTGGCAGATTACGAAAACTAT 59.671 41.667 7.48 0.00 38.72 2.12
688 695 1.267532 GCAATCGTGTGGCAGATTACG 60.268 52.381 0.73 4.13 35.54 3.18
690 697 1.378531 GGCAATCGTGTGGCAGATTA 58.621 50.000 9.19 0.00 43.33 1.75
737 744 4.689345 CGTCGGGTAATCAAGAAAAGTCTT 59.311 41.667 0.00 0.00 45.36 3.01
787 794 1.904287 TATTGCGGCCAGACAAGTTT 58.096 45.000 2.24 0.00 0.00 2.66
788 795 1.904287 TTATTGCGGCCAGACAAGTT 58.096 45.000 2.24 0.00 0.00 2.66
825 832 1.648568 AGGGAGAGTCAGAGGATGGAA 59.351 52.381 0.00 0.00 0.00 3.53
959 966 1.153229 GGGTGGTAAGATGGCCGAC 60.153 63.158 0.00 0.00 0.00 4.79
1094 1101 2.436115 GACTAACTGGTGGCGGCC 60.436 66.667 13.32 13.32 0.00 6.13
1113 1120 2.788065 GCGCCGTCTTTCAGCTATTTTC 60.788 50.000 0.00 0.00 0.00 2.29
1171 1179 4.331168 AGCATTTAATCTGTCGAGTGCTTC 59.669 41.667 0.00 0.00 38.41 3.86
1172 1180 4.256920 AGCATTTAATCTGTCGAGTGCTT 58.743 39.130 0.00 0.00 38.41 3.91
1178 1186 7.014711 AGGATTCTAGAGCATTTAATCTGTCGA 59.985 37.037 0.00 0.00 0.00 4.20
1191 1199 4.217334 CGCTAGATTGAGGATTCTAGAGCA 59.783 45.833 10.36 0.00 35.46 4.26
1199 1207 3.550437 ACTTGCGCTAGATTGAGGATT 57.450 42.857 25.45 0.00 0.00 3.01
1258 1266 1.747355 TCCGACGACATAACTTCCCTC 59.253 52.381 0.00 0.00 0.00 4.30
1275 1283 3.467803 GGATCCCACAAGTAAAGATCCG 58.532 50.000 0.00 0.00 42.53 4.18
1285 1293 6.183360 ACAAACTAAAACAAGGATCCCACAAG 60.183 38.462 8.55 0.00 0.00 3.16
1377 1385 6.458232 ACATCTTAACAGAATAGCTCGTCT 57.542 37.500 0.00 0.00 30.76 4.18
1394 1402 7.849804 ATATCGAACTGTTAGCAAACATCTT 57.150 32.000 0.00 0.00 44.43 2.40
1396 1404 8.895932 AAAATATCGAACTGTTAGCAAACATC 57.104 30.769 0.00 0.00 44.43 3.06
1397 1405 8.511321 TGAAAATATCGAACTGTTAGCAAACAT 58.489 29.630 0.00 0.00 44.43 2.71
1399 1407 8.227791 TCTGAAAATATCGAACTGTTAGCAAAC 58.772 33.333 0.00 0.00 36.07 2.93
1440 1449 2.147387 ACGGGGGAGCTTCAGTTGT 61.147 57.895 0.00 0.00 0.00 3.32
1523 1532 2.807967 CAGCTGAAAATCTTCACCGACA 59.192 45.455 8.42 0.00 36.62 4.35
1585 1594 6.051717 ACCATAATTCATGTCAGCTGACTAC 58.948 40.000 38.81 20.60 44.99 2.73
1597 1606 5.887598 TCTCCAGGACAAACCATAATTCATG 59.112 40.000 0.00 0.00 42.04 3.07
1607 1616 1.420138 TCAAGGTCTCCAGGACAAACC 59.580 52.381 3.50 3.50 46.16 3.27
1888 1898 5.493809 GCAGAATTTACCCTGTACTGGTAA 58.506 41.667 18.11 18.11 44.52 2.85
2082 2093 3.973206 TCAAAACGAGGAAGCTCCATA 57.027 42.857 0.00 0.00 39.61 2.74
2153 2165 2.440409 AGAAACAGAAGCATCGGCATT 58.560 42.857 0.00 0.00 44.61 3.56
2365 2378 5.319043 ACCCAGACTAATTTTGTCAAGGA 57.681 39.130 18.89 0.00 36.94 3.36
2375 2388 7.255836 GCTTCTTTTGGTTTACCCAGACTAATT 60.256 37.037 0.00 0.00 46.31 1.40
2589 2602 7.001073 AGAGGATGGGATGAAATAAACTTAGC 58.999 38.462 0.00 0.00 0.00 3.09
2615 2628 9.290988 TCCAATAGTAATGCTAAAAAGACACAA 57.709 29.630 0.00 0.00 32.72 3.33
2635 2648 9.213777 GGTACAGGGATCTATATCATTCCAATA 57.786 37.037 0.00 0.00 33.41 1.90
2642 2656 8.742125 TCTTTTGGTACAGGGATCTATATCAT 57.258 34.615 0.00 0.00 42.39 2.45
2654 2668 4.826274 TGATCCTCTCTTTTGGTACAGG 57.174 45.455 0.00 0.00 42.39 4.00
2872 2886 9.155975 GTCTTGATCTACAGAAATAGCAGAAAA 57.844 33.333 0.00 0.00 0.00 2.29
3001 3015 3.103637 TGGGAACAAAGTGGAACGG 57.896 52.632 0.00 0.00 39.29 4.44
3223 3237 7.124052 AGATTCCCTGAAACATTTCATGAGAT 58.876 34.615 7.48 0.00 45.26 2.75
3466 3658 7.482474 TGACCTGAATACAAACGACGATAATA 58.518 34.615 0.00 0.00 0.00 0.98
3470 3662 4.174009 CTGACCTGAATACAAACGACGAT 58.826 43.478 0.00 0.00 0.00 3.73
3472 3664 3.314553 ACTGACCTGAATACAAACGACG 58.685 45.455 0.00 0.00 0.00 5.12
3476 3668 8.784043 ACTTCATTAACTGACCTGAATACAAAC 58.216 33.333 0.00 0.00 32.17 2.93
3563 3755 6.053632 TCAGGTTCAAGCAAGAATGAGATA 57.946 37.500 0.00 0.00 0.00 1.98
3615 3807 5.623169 AGAAACCGATGGTTAACCTTACAA 58.377 37.500 24.78 5.10 46.20 2.41
3631 3823 8.712285 TGTTAGGAACATTTAGATAGAAACCG 57.288 34.615 0.00 0.00 36.25 4.44
3650 3842 6.486657 TCACCATCTTCAAGTTTTCTGTTAGG 59.513 38.462 0.00 0.00 0.00 2.69
3784 3976 7.796054 AGTTGCATCTTACAGGTTATATGTCT 58.204 34.615 0.00 0.00 32.02 3.41
3852 4044 3.473367 CTGTTTCGAAGCTTCATCAACG 58.527 45.455 25.47 11.63 0.00 4.10
3975 4167 8.798859 ATATAATAGCCGCAAGAGAAAATGAT 57.201 30.769 0.00 0.00 43.02 2.45
3988 4180 4.579454 TCCGGTATGATATAATAGCCGC 57.421 45.455 0.00 0.00 36.79 6.53
4095 4288 5.984926 CAGGTTTAACTGTGCATCAAAATGT 59.015 36.000 0.00 0.00 33.22 2.71
4643 4836 7.253422 AGTCCTGCAAAATATGAAATCTTTCG 58.747 34.615 0.00 0.00 40.01 3.46
4649 4842 5.876460 GCCAAAGTCCTGCAAAATATGAAAT 59.124 36.000 0.00 0.00 0.00 2.17
4804 4997 0.895100 ATGCCACATCCACACCACAC 60.895 55.000 0.00 0.00 0.00 3.82
4805 4998 0.178967 AATGCCACATCCACACCACA 60.179 50.000 0.00 0.00 0.00 4.17
4806 4999 0.244450 CAATGCCACATCCACACCAC 59.756 55.000 0.00 0.00 0.00 4.16
4807 5000 0.178967 ACAATGCCACATCCACACCA 60.179 50.000 0.00 0.00 0.00 4.17
4808 5001 0.244450 CACAATGCCACATCCACACC 59.756 55.000 0.00 0.00 0.00 4.16
4839 5032 4.032445 GGCGACAAAAACTTTGGAAAAGAC 59.968 41.667 6.73 0.00 0.00 3.01
4842 5035 4.177783 GAGGCGACAAAAACTTTGGAAAA 58.822 39.130 0.00 0.00 0.00 2.29
4919 5112 2.104170 AGGCCGAAAAAGTGAAAACCA 58.896 42.857 0.00 0.00 0.00 3.67
4962 5155 9.897744 CATCAAACAGCAGAGAAAATAAGTTTA 57.102 29.630 0.00 0.00 0.00 2.01
5104 5298 1.806542 ACTTGCTATTTGCTGACACCG 59.193 47.619 0.00 0.00 43.37 4.94
5107 5301 4.329801 CGTATCACTTGCTATTTGCTGACA 59.670 41.667 0.00 0.00 43.37 3.58
5149 5343 1.237285 ACACCGTCTCAATGGCAAGC 61.237 55.000 0.00 0.00 34.61 4.01
5182 5376 1.006688 AAAATCCACGCGGTTTGGC 60.007 52.632 12.47 0.00 33.71 4.52
5191 5385 1.539827 GTGACCCAAGGAAAATCCACG 59.460 52.381 0.00 0.00 39.61 4.94
5204 5398 0.682532 TTGCAGCAAGTTGTGACCCA 60.683 50.000 2.83 0.00 0.00 4.51
5330 5524 9.794719 ATGAATCATCATATGTTTGACTCTCAT 57.205 29.630 15.56 15.96 44.50 2.90
5470 7941 0.033504 TCTGTTCTCAGAACCGGCAC 59.966 55.000 15.20 0.00 46.17 5.01
5561 8032 0.916086 ACACTGTCCTGTTTCCCACA 59.084 50.000 0.00 0.00 0.00 4.17
5573 8044 6.311200 ACAAAAATTCTGCTGAAAACACTGTC 59.689 34.615 10.27 0.00 35.63 3.51
5647 8118 5.242838 TCCATTGGGACATAGACAAAACAAC 59.757 40.000 2.09 0.00 38.64 3.32
5648 8119 5.389520 TCCATTGGGACATAGACAAAACAA 58.610 37.500 2.09 0.00 38.64 2.83
5681 8154 2.350484 GCGAAAAGCGAGGTTTTTAGCT 60.350 45.455 22.04 0.00 44.57 3.32
5682 8155 1.976728 GCGAAAAGCGAGGTTTTTAGC 59.023 47.619 13.22 16.13 44.57 3.09
5701 8602 1.024271 TTCAGTGCAGAAACTGGTGC 58.976 50.000 4.63 0.00 46.27 5.01
5736 8638 3.716431 AGTGGACCGTATCTTTTAGGGA 58.284 45.455 0.00 0.00 0.00 4.20
5750 8652 4.134563 TGAAAACAGAGCTTAAGTGGACC 58.865 43.478 4.02 0.00 0.00 4.46
5752 8654 5.869579 AGATGAAAACAGAGCTTAAGTGGA 58.130 37.500 4.02 0.00 0.00 4.02
5759 8661 5.936956 CCAACTAGAGATGAAAACAGAGCTT 59.063 40.000 0.00 0.00 0.00 3.74
5760 8662 5.012561 ACCAACTAGAGATGAAAACAGAGCT 59.987 40.000 0.00 0.00 0.00 4.09
5779 8687 2.806608 TGAACCGACAGTCTACCAAC 57.193 50.000 0.00 0.00 0.00 3.77
5805 8714 2.515523 CCGAGGCTTGCATCCCAG 60.516 66.667 1.62 0.00 0.00 4.45
5809 8718 3.512516 GCACCCGAGGCTTGCATC 61.513 66.667 4.08 0.00 0.00 3.91
5844 8755 3.690460 CCTTGAAATGGAGTAAGCTGGT 58.310 45.455 0.00 0.00 31.60 4.00
5849 8760 5.238214 GCTATGAGCCTTGAAATGGAGTAAG 59.762 44.000 0.00 0.00 34.48 2.34
5854 8765 3.200605 TCTGCTATGAGCCTTGAAATGGA 59.799 43.478 0.00 0.00 41.51 3.41
5861 8772 3.015327 AGCTTTTCTGCTATGAGCCTTG 58.985 45.455 0.00 0.00 41.51 3.61
5894 11974 6.671190 CAGCTTAGTTCATGATCAACAACAA 58.329 36.000 17.83 11.10 0.00 2.83
5895 11975 5.335113 GCAGCTTAGTTCATGATCAACAACA 60.335 40.000 17.83 5.88 0.00 3.33
5896 11976 5.091431 GCAGCTTAGTTCATGATCAACAAC 58.909 41.667 0.00 5.76 0.00 3.32
5983 12075 8.234546 ACAATATTTCGTTTCAGCGTTTATCTT 58.765 29.630 0.00 0.00 0.00 2.40
5990 12082 5.849357 TGTACAATATTTCGTTTCAGCGT 57.151 34.783 0.00 0.00 0.00 5.07
5991 12083 6.246332 CACTTGTACAATATTTCGTTTCAGCG 59.754 38.462 9.13 0.00 0.00 5.18
5992 12084 7.075741 ACACTTGTACAATATTTCGTTTCAGC 58.924 34.615 9.13 0.00 0.00 4.26
6055 12147 2.189558 TACTAGGAAGCAGGGGGCCA 62.190 60.000 4.39 0.00 46.50 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.