Multiple sequence alignment - TraesCS1B01G200000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G200000 chr1B 100.000 4215 0 0 3684 7898 358025365 358021151 0.000000e+00 7784
1 TraesCS1B01G200000 chr1B 100.000 3376 0 0 1 3376 358029048 358025673 0.000000e+00 6235
2 TraesCS1B01G200000 chr1B 85.847 756 92 14 4 754 661569653 661568908 0.000000e+00 789
3 TraesCS1B01G200000 chr1B 91.837 147 11 1 3968 4113 543038914 543038768 3.740000e-48 204
4 TraesCS1B01G200000 chr1A 93.892 3520 138 25 4104 7575 326211119 326214609 0.000000e+00 5238
5 TraesCS1B01G200000 chr1A 97.801 1410 30 1 773 2182 326207895 326209303 0.000000e+00 2431
6 TraesCS1B01G200000 chr1A 94.867 526 17 3 2693 3209 326210067 326210591 0.000000e+00 813
7 TraesCS1B01G200000 chr1A 91.214 387 27 4 2180 2560 326209330 326209715 3.270000e-143 520
8 TraesCS1B01G200000 chr1A 94.613 297 12 2 3685 3980 326210827 326211120 2.600000e-124 457
9 TraesCS1B01G200000 chr1A 89.324 281 22 3 7596 7869 326215054 326215333 5.870000e-91 346
10 TraesCS1B01G200000 chr1A 89.375 160 12 5 3946 4105 547018640 547018794 6.250000e-46 196
11 TraesCS1B01G200000 chr1D 94.096 3269 140 32 4104 7354 254608019 254611252 0.000000e+00 4918
12 TraesCS1B01G200000 chr1D 93.530 2875 138 31 4663 7521 254608549 254611391 0.000000e+00 4235
13 TraesCS1B01G200000 chr1D 97.767 1388 31 0 796 2183 254604431 254605818 0.000000e+00 2392
14 TraesCS1B01G200000 chr1D 94.236 694 29 4 2693 3376 254606728 254607420 0.000000e+00 1050
15 TraesCS1B01G200000 chr1D 90.956 387 29 3 2180 2560 254605844 254606230 4.230000e-142 516
16 TraesCS1B01G200000 chr1D 93.645 299 13 3 3685 3980 254607725 254608020 7.270000e-120 442
17 TraesCS1B01G200000 chr1D 90.584 308 19 4 7598 7898 254611428 254611732 4.440000e-107 399
18 TraesCS1B01G200000 chr1D 87.898 157 14 5 3950 4105 438323395 438323243 6.300000e-41 180
19 TraesCS1B01G200000 chr5B 86.235 741 87 14 4 739 42257814 42257084 0.000000e+00 789
20 TraesCS1B01G200000 chr5B 94.853 136 7 0 3970 4105 11360510 11360375 6.210000e-51 213
21 TraesCS1B01G200000 chr6B 85.547 768 91 19 4 765 601871020 601871773 0.000000e+00 785
22 TraesCS1B01G200000 chr6B 86.100 741 88 14 4 739 337939850 337940580 0.000000e+00 784
23 TraesCS1B01G200000 chr6B 85.344 771 94 18 4 768 698980492 698981249 0.000000e+00 780
24 TraesCS1B01G200000 chr4B 85.752 758 90 17 4 754 54040152 54039406 0.000000e+00 785
25 TraesCS1B01G200000 chr4B 85.545 761 90 18 4 758 122561088 122561834 0.000000e+00 778
26 TraesCS1B01G200000 chr7A 85.657 753 93 14 4 751 119788037 119787295 0.000000e+00 778
27 TraesCS1B01G200000 chr7A 85.450 756 94 15 4 754 194169440 194168696 0.000000e+00 773
28 TraesCS1B01G200000 chr7D 94.245 139 6 2 3973 4110 54967189 54967052 2.230000e-50 211
29 TraesCS1B01G200000 chr2B 95.489 133 5 1 3973 4105 578606507 578606376 2.230000e-50 211
30 TraesCS1B01G200000 chr2A 93.007 143 10 0 3976 4118 70030632 70030774 8.030000e-50 209
31 TraesCS1B01G200000 chr5A 92.466 146 7 4 3972 4114 662382620 662382764 1.040000e-48 206
32 TraesCS1B01G200000 chr7B 90.968 155 8 6 3959 4111 88278628 88278778 3.740000e-48 204
33 TraesCS1B01G200000 chr6D 91.837 147 11 1 3959 4105 433639358 433639213 3.740000e-48 204
34 TraesCS1B01G200000 chr3A 88.608 158 14 4 3948 4105 644820546 644820393 1.050000e-43 189


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G200000 chr1B 358021151 358029048 7897 True 7009.500000 7784 100.000000 1 7898 2 chr1B.!!$R3 7897
1 TraesCS1B01G200000 chr1B 661568908 661569653 745 True 789.000000 789 85.847000 4 754 1 chr1B.!!$R2 750
2 TraesCS1B01G200000 chr1A 326207895 326215333 7438 False 1634.166667 5238 93.618500 773 7869 6 chr1A.!!$F2 7096
3 TraesCS1B01G200000 chr1D 254604431 254611732 7301 False 1993.142857 4918 93.544857 796 7898 7 chr1D.!!$F1 7102
4 TraesCS1B01G200000 chr5B 42257084 42257814 730 True 789.000000 789 86.235000 4 739 1 chr5B.!!$R2 735
5 TraesCS1B01G200000 chr6B 601871020 601871773 753 False 785.000000 785 85.547000 4 765 1 chr6B.!!$F2 761
6 TraesCS1B01G200000 chr6B 337939850 337940580 730 False 784.000000 784 86.100000 4 739 1 chr6B.!!$F1 735
7 TraesCS1B01G200000 chr6B 698980492 698981249 757 False 780.000000 780 85.344000 4 768 1 chr6B.!!$F3 764
8 TraesCS1B01G200000 chr4B 54039406 54040152 746 True 785.000000 785 85.752000 4 754 1 chr4B.!!$R1 750
9 TraesCS1B01G200000 chr4B 122561088 122561834 746 False 778.000000 778 85.545000 4 758 1 chr4B.!!$F1 754
10 TraesCS1B01G200000 chr7A 119787295 119788037 742 True 778.000000 778 85.657000 4 751 1 chr7A.!!$R1 747
11 TraesCS1B01G200000 chr7A 194168696 194169440 744 True 773.000000 773 85.450000 4 754 1 chr7A.!!$R2 750

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
538 541 0.108329 CGTCACGAAACCCTATGCCT 60.108 55.000 0.00 0.00 0.00 4.75 F
547 550 0.327000 ACCCTATGCCTGGAGAAGCT 60.327 55.000 0.00 0.00 0.00 3.74 F
776 783 1.074951 GTGGGAGGGGTGAGGTTTG 59.925 63.158 0.00 0.00 0.00 2.93 F
2291 2339 0.684805 ATCGGATCTAGGATCGGGCC 60.685 60.000 0.00 0.00 0.00 5.80 F
3170 3592 0.239347 GCCAATCGCCATAGCACATC 59.761 55.000 0.00 0.00 39.83 3.06 F
3319 3741 1.070134 TCTTTTCCCAGGACAGTGTCG 59.930 52.381 16.89 4.27 32.65 4.35 F
4101 4526 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20 F
4102 4527 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30 F
5088 5517 0.754217 TACGGCCATAACGCTCCTCT 60.754 55.000 2.24 0.00 34.00 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2027 2034 0.318784 GATCATCGTAGCGACCACCC 60.319 60.000 0.00 0.00 39.18 4.61 R
2289 2337 1.896220 TAATGATTCGATGGCCTGGC 58.104 50.000 11.05 11.05 0.00 4.85 R
2540 2588 5.351948 AAACCTTTTTGCCTTGTACATGT 57.648 34.783 2.69 2.69 0.00 3.21 R
4082 4507 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12 R
4087 4512 0.032813 ATTACTCCCTCCGTCCGGAA 60.033 55.000 5.23 0.00 44.66 4.30 R
4375 4800 1.338020 CCCAAGACTGTCCAAACAAGC 59.662 52.381 3.76 0.00 34.24 4.01 R
5982 6417 0.179936 GGGAGTTGATGCCTGAGGAG 59.820 60.000 0.65 0.00 36.22 3.69 R
6043 6478 0.698238 TAGCAGTCAAACCTGGCCAT 59.302 50.000 5.51 0.00 32.92 4.40 R
7060 7500 0.250814 AAACCGTCCCCGCAAATACA 60.251 50.000 0.00 0.00 0.00 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.920325 CAAGGAGAGGGGCCAGTCA 60.920 63.158 4.39 0.00 0.00 3.41
122 123 4.722700 CCCGGCCCAAGACCACAG 62.723 72.222 0.00 0.00 0.00 3.66
123 124 3.636231 CCGGCCCAAGACCACAGA 61.636 66.667 0.00 0.00 0.00 3.41
124 125 2.358737 CGGCCCAAGACCACAGAC 60.359 66.667 0.00 0.00 0.00 3.51
125 126 2.034221 GGCCCAAGACCACAGACC 59.966 66.667 0.00 0.00 0.00 3.85
129 130 2.153401 CCAAGACCACAGACCCCCA 61.153 63.158 0.00 0.00 0.00 4.96
132 133 0.478507 AAGACCACAGACCCCCAAAG 59.521 55.000 0.00 0.00 0.00 2.77
136 137 1.715019 CCACAGACCCCCAAAGACCA 61.715 60.000 0.00 0.00 0.00 4.02
139 140 1.386772 AGACCCCCAAAGACCACCA 60.387 57.895 0.00 0.00 0.00 4.17
141 142 0.114364 GACCCCCAAAGACCACCAAT 59.886 55.000 0.00 0.00 0.00 3.16
145 146 1.269012 CCCAAAGACCACCAATGCAT 58.731 50.000 0.00 0.00 0.00 3.96
146 147 1.066716 CCCAAAGACCACCAATGCATG 60.067 52.381 0.00 0.00 0.00 4.06
160 161 1.451028 GCATGGGCAGACAGGAGAC 60.451 63.158 0.00 0.00 40.72 3.36
161 162 1.985614 CATGGGCAGACAGGAGACA 59.014 57.895 0.00 0.00 0.00 3.41
177 178 2.587194 CAGGGAAGCAGATCGCCG 60.587 66.667 6.02 0.00 44.04 6.46
196 197 2.122413 AGAGGACCACCAGCACCA 60.122 61.111 0.00 0.00 38.94 4.17
205 206 0.607489 CACCAGCACCAAGAGGGAAG 60.607 60.000 0.00 0.00 41.15 3.46
210 211 1.763770 CACCAAGAGGGAAGCCACT 59.236 57.895 0.00 0.00 41.15 4.00
214 215 2.239907 ACCAAGAGGGAAGCCACTTATC 59.760 50.000 0.00 0.00 41.15 1.75
220 221 2.173569 AGGGAAGCCACTTATCATCACC 59.826 50.000 0.00 0.00 0.00 4.02
223 224 3.270877 GAAGCCACTTATCATCACCGTT 58.729 45.455 0.00 0.00 0.00 4.44
226 227 3.006940 GCCACTTATCATCACCGTTGAA 58.993 45.455 0.00 0.00 34.61 2.69
233 234 1.553248 TCATCACCGTTGAAGTAGGGG 59.447 52.381 0.00 0.00 34.61 4.79
279 280 2.983592 CCGGGTGTCTGCCAAACC 60.984 66.667 0.00 0.00 0.00 3.27
281 282 1.826054 CGGGTGTCTGCCAAACCAA 60.826 57.895 0.00 0.00 35.56 3.67
290 291 2.736531 CCAAACCAAGCCAGCCAC 59.263 61.111 0.00 0.00 0.00 5.01
296 297 4.047059 CAAGCCAGCCACCGCAAG 62.047 66.667 0.00 0.00 37.52 4.01
323 324 3.774528 CGAGCAGGGCTAGTGGCA 61.775 66.667 0.00 0.00 39.88 4.92
329 330 2.998097 GGGCTAGTGGCACCATCA 59.002 61.111 15.27 0.00 44.01 3.07
333 334 0.745845 GCTAGTGGCACCATCACAGG 60.746 60.000 15.27 0.00 41.35 4.00
336 337 1.210204 AGTGGCACCATCACAGGGAT 61.210 55.000 15.27 0.00 37.58 3.85
338 339 0.915872 TGGCACCATCACAGGGATCT 60.916 55.000 0.00 0.00 32.57 2.75
345 346 1.639635 ATCACAGGGATCTGCCACCC 61.640 60.000 0.00 0.00 44.59 4.61
352 353 4.101448 ATCTGCCACCCGCACCTC 62.101 66.667 0.00 0.00 44.64 3.85
498 501 3.721706 CCAGGTCCAGAGGCCCAC 61.722 72.222 0.00 0.00 0.00 4.61
511 514 1.074471 GCCCACCCCTCTGGATCTA 60.074 63.158 0.00 0.00 38.00 1.98
534 537 1.153706 CGCCGTCACGAAACCCTAT 60.154 57.895 0.00 0.00 34.06 2.57
536 539 1.702491 GCCGTCACGAAACCCTATGC 61.702 60.000 0.00 0.00 0.00 3.14
537 540 1.087771 CCGTCACGAAACCCTATGCC 61.088 60.000 0.00 0.00 0.00 4.40
538 541 0.108329 CGTCACGAAACCCTATGCCT 60.108 55.000 0.00 0.00 0.00 4.75
547 550 0.327000 ACCCTATGCCTGGAGAAGCT 60.327 55.000 0.00 0.00 0.00 3.74
562 566 2.771763 AAGCTCCGTTCGTCAGCCTG 62.772 60.000 8.93 0.00 33.28 4.85
569 573 3.282745 TTCGTCAGCCTGGTCGAGC 62.283 63.158 7.89 7.89 33.98 5.03
589 593 3.702048 CCACGCTCGAAGGGGGAA 61.702 66.667 0.00 0.00 32.66 3.97
605 609 4.410400 AAGCCGCCGGGGAGAAAG 62.410 66.667 21.95 3.45 38.47 2.62
677 682 2.941583 GCAGGGGAAGGGGAAGGT 60.942 66.667 0.00 0.00 0.00 3.50
743 750 3.399181 GTGGGAGGGCGACATGGA 61.399 66.667 0.00 0.00 0.00 3.41
746 753 3.866582 GGAGGGCGACATGGAGGG 61.867 72.222 0.00 0.00 0.00 4.30
770 777 4.348495 GAGGGGTGGGAGGGGTGA 62.348 72.222 0.00 0.00 0.00 4.02
771 778 4.354943 AGGGGTGGGAGGGGTGAG 62.355 72.222 0.00 0.00 0.00 3.51
776 783 1.074951 GTGGGAGGGGTGAGGTTTG 59.925 63.158 0.00 0.00 0.00 2.93
805 812 4.829064 TTGATCAGTTGTTGCCAGTTAC 57.171 40.909 0.00 0.00 0.00 2.50
815 822 7.387948 CAGTTGTTGCCAGTTACTTCTTATACT 59.612 37.037 0.00 0.00 0.00 2.12
823 830 9.680315 GCCAGTTACTTCTTATACTACATACTG 57.320 37.037 0.00 0.00 0.00 2.74
850 857 6.647067 GGCACACATCTGTTCTATTACTATCC 59.353 42.308 0.00 0.00 0.00 2.59
851 858 7.210174 GCACACATCTGTTCTATTACTATCCA 58.790 38.462 0.00 0.00 0.00 3.41
900 907 2.307098 AGGCTCAGTCATAAGTGGCTTT 59.693 45.455 0.00 0.00 38.51 3.51
901 908 2.421424 GGCTCAGTCATAAGTGGCTTTG 59.579 50.000 0.00 0.00 38.51 2.77
933 940 4.406456 TGTGGAGTGATGCCTTTATTGTT 58.594 39.130 0.00 0.00 0.00 2.83
1256 1263 9.362539 GTCTGATTTGTTAGGATACGAAGTTTA 57.637 33.333 0.00 0.00 37.78 2.01
1287 1294 7.556635 GGGAAGCTTACATTAGATAACAAAGGT 59.443 37.037 11.69 0.00 0.00 3.50
1865 1872 5.938125 GGTAGATCTAGCAAAGTTTTCCACA 59.062 40.000 23.80 0.00 34.00 4.17
1924 1931 8.640291 GCTAAGTAGAAGCATGTTAATATCGAC 58.360 37.037 0.00 0.00 39.83 4.20
2226 2262 5.116180 ACACTGTCATACCATTGATTACCG 58.884 41.667 0.00 0.00 0.00 4.02
2284 2332 8.763984 AGTAGAAAAGTTAATCGGATCTAGGA 57.236 34.615 0.00 0.00 0.00 2.94
2285 2333 9.369672 AGTAGAAAAGTTAATCGGATCTAGGAT 57.630 33.333 0.00 0.00 0.00 3.24
2287 2335 7.371936 AGAAAAGTTAATCGGATCTAGGATCG 58.628 38.462 0.00 0.00 0.00 3.69
2288 2336 5.646577 AAGTTAATCGGATCTAGGATCGG 57.353 43.478 8.23 8.23 0.00 4.18
2289 2337 4.017808 AGTTAATCGGATCTAGGATCGGG 58.982 47.826 12.71 4.02 0.00 5.14
2290 2338 1.187087 AATCGGATCTAGGATCGGGC 58.813 55.000 12.71 0.00 0.00 6.13
2291 2339 0.684805 ATCGGATCTAGGATCGGGCC 60.685 60.000 0.00 0.00 0.00 5.80
2292 2340 1.606601 CGGATCTAGGATCGGGCCA 60.607 63.158 4.39 0.00 0.00 5.36
2308 2356 1.896220 GCCAGGCCATCGAATCATTA 58.104 50.000 5.01 0.00 0.00 1.90
2317 2365 6.721208 AGGCCATCGAATCATTATTTTACCAT 59.279 34.615 5.01 0.00 0.00 3.55
2399 2447 3.385193 ACTGCAAAGTTGTATTTGGGC 57.615 42.857 1.80 0.00 39.94 5.36
2402 2450 3.726607 TGCAAAGTTGTATTTGGGCTTG 58.273 40.909 1.80 0.00 39.94 4.01
2406 2454 5.277297 GCAAAGTTGTATTTGGGCTTGTTTC 60.277 40.000 1.80 0.00 39.94 2.78
2482 2530 9.076781 TCTGGTCTTATTCAATTCATTTTGTGA 57.923 29.630 0.00 0.00 34.25 3.58
2560 2608 3.957497 TGACATGTACAAGGCAAAAAGGT 59.043 39.130 3.65 0.00 0.00 3.50
2561 2609 4.404073 TGACATGTACAAGGCAAAAAGGTT 59.596 37.500 3.65 0.00 0.00 3.50
2562 2610 5.105146 TGACATGTACAAGGCAAAAAGGTTT 60.105 36.000 3.65 0.00 0.00 3.27
2565 2613 7.505258 ACATGTACAAGGCAAAAAGGTTTTAT 58.495 30.769 0.00 0.00 0.00 1.40
2566 2614 7.990314 ACATGTACAAGGCAAAAAGGTTTTATT 59.010 29.630 0.00 0.00 0.00 1.40
2648 2977 9.998106 ATCTAAAAGTACTGACATGTACAGTTT 57.002 29.630 25.58 18.83 44.69 2.66
2690 3019 9.817809 GACATAACTCATCAGTTTACTAATCCA 57.182 33.333 0.00 0.00 40.16 3.41
2836 3249 6.479972 TTTAGTACCTGTCCAGATGGTATG 57.520 41.667 0.00 0.00 38.42 2.39
2839 3252 3.914426 ACCTGTCCAGATGGTATGTTC 57.086 47.619 0.00 0.00 36.34 3.18
2857 3270 8.616076 GGTATGTTCATCTTTACATCTTTCCTG 58.384 37.037 0.00 0.00 36.46 3.86
2902 3315 3.608316 TCACTTTTTGCCTGCACTTTT 57.392 38.095 0.00 0.00 0.00 2.27
2919 3332 7.144661 TGCACTTTTTAGGAATTGTATGTGTG 58.855 34.615 0.00 0.00 0.00 3.82
2983 3396 7.551035 TTCCATGCATATTATTTTTGTTGGC 57.449 32.000 0.00 0.00 0.00 4.52
3036 3449 9.013229 TCTAGTGTGGTATAGTAACGAGAAAAA 57.987 33.333 0.00 0.00 0.00 1.94
3048 3461 8.874744 AGTAACGAGAAAAAGATAATCCTAGC 57.125 34.615 0.00 0.00 0.00 3.42
3056 3469 4.857509 AAGATAATCCTAGCGTCAGTCC 57.142 45.455 0.00 0.00 0.00 3.85
3110 3532 3.368822 CCCAATGGGCACACAGTG 58.631 61.111 4.89 0.00 35.35 3.66
3170 3592 0.239347 GCCAATCGCCATAGCACATC 59.761 55.000 0.00 0.00 39.83 3.06
3305 3727 8.142994 TCATCAACAAGAGTACAGTTCTTTTC 57.857 34.615 0.00 0.00 32.75 2.29
3319 3741 1.070134 TCTTTTCCCAGGACAGTGTCG 59.930 52.381 16.89 4.27 32.65 4.35
3806 4228 1.914108 AGCTCCCTAACTTAACCCACC 59.086 52.381 0.00 0.00 0.00 4.61
3814 4236 1.364269 ACTTAACCCACCCGATTGGA 58.636 50.000 0.00 0.00 39.24 3.53
3845 4267 3.117625 GGTTCAGGGGTTTTATCTAGGGG 60.118 52.174 0.00 0.00 0.00 4.79
3848 4270 1.850998 AGGGGTTTTATCTAGGGGCAC 59.149 52.381 0.00 0.00 0.00 5.01
3889 4313 5.764686 CCATATTCTACTTTGCTATGCCACA 59.235 40.000 0.00 0.00 0.00 4.17
3890 4314 6.262944 CCATATTCTACTTTGCTATGCCACAA 59.737 38.462 0.00 0.00 0.00 3.33
3891 4315 7.040201 CCATATTCTACTTTGCTATGCCACAAT 60.040 37.037 0.00 0.00 0.00 2.71
3936 4360 2.159382 AGTTGCTGGGTTTTGGATACG 58.841 47.619 0.00 0.00 42.51 3.06
3984 4409 8.759481 AGTACTACCAACTAAATACTACTCCC 57.241 38.462 0.00 0.00 0.00 4.30
3985 4410 8.564370 AGTACTACCAACTAAATACTACTCCCT 58.436 37.037 0.00 0.00 0.00 4.20
3986 4411 7.894753 ACTACCAACTAAATACTACTCCCTC 57.105 40.000 0.00 0.00 0.00 4.30
3987 4412 7.650660 ACTACCAACTAAATACTACTCCCTCT 58.349 38.462 0.00 0.00 0.00 3.69
3988 4413 6.793505 ACCAACTAAATACTACTCCCTCTG 57.206 41.667 0.00 0.00 0.00 3.35
3989 4414 6.262207 ACCAACTAAATACTACTCCCTCTGT 58.738 40.000 0.00 0.00 0.00 3.41
3990 4415 6.380560 ACCAACTAAATACTACTCCCTCTGTC 59.619 42.308 0.00 0.00 0.00 3.51
3991 4416 6.183360 CCAACTAAATACTACTCCCTCTGTCC 60.183 46.154 0.00 0.00 0.00 4.02
3992 4417 5.131784 ACTAAATACTACTCCCTCTGTCCG 58.868 45.833 0.00 0.00 0.00 4.79
3993 4418 3.947612 AATACTACTCCCTCTGTCCGA 57.052 47.619 0.00 0.00 0.00 4.55
3994 4419 3.947612 ATACTACTCCCTCTGTCCGAA 57.052 47.619 0.00 0.00 0.00 4.30
3995 4420 2.599408 ACTACTCCCTCTGTCCGAAA 57.401 50.000 0.00 0.00 0.00 3.46
3996 4421 2.885616 ACTACTCCCTCTGTCCGAAAA 58.114 47.619 0.00 0.00 0.00 2.29
3997 4422 3.442076 ACTACTCCCTCTGTCCGAAAAT 58.558 45.455 0.00 0.00 0.00 1.82
3998 4423 4.607239 ACTACTCCCTCTGTCCGAAAATA 58.393 43.478 0.00 0.00 0.00 1.40
3999 4424 3.889520 ACTCCCTCTGTCCGAAAATAC 57.110 47.619 0.00 0.00 0.00 1.89
4000 4425 3.442076 ACTCCCTCTGTCCGAAAATACT 58.558 45.455 0.00 0.00 0.00 2.12
4001 4426 3.838903 ACTCCCTCTGTCCGAAAATACTT 59.161 43.478 0.00 0.00 0.00 2.24
4002 4427 4.184629 CTCCCTCTGTCCGAAAATACTTG 58.815 47.826 0.00 0.00 0.00 3.16
4003 4428 3.581332 TCCCTCTGTCCGAAAATACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
4004 4429 3.933332 CCCTCTGTCCGAAAATACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
4005 4430 4.562757 CCCTCTGTCCGAAAATACTTGTCA 60.563 45.833 0.00 0.00 0.00 3.58
4006 4431 5.178797 CCTCTGTCCGAAAATACTTGTCAT 58.821 41.667 0.00 0.00 0.00 3.06
4007 4432 5.292101 CCTCTGTCCGAAAATACTTGTCATC 59.708 44.000 0.00 0.00 0.00 2.92
4008 4433 5.789521 TCTGTCCGAAAATACTTGTCATCA 58.210 37.500 0.00 0.00 0.00 3.07
4009 4434 6.227522 TCTGTCCGAAAATACTTGTCATCAA 58.772 36.000 0.00 0.00 0.00 2.57
4010 4435 6.708502 TCTGTCCGAAAATACTTGTCATCAAA 59.291 34.615 0.00 0.00 32.87 2.69
4011 4436 7.227711 TCTGTCCGAAAATACTTGTCATCAAAA 59.772 33.333 0.00 0.00 32.87 2.44
4012 4437 7.881142 TGTCCGAAAATACTTGTCATCAAAAT 58.119 30.769 0.00 0.00 32.87 1.82
4013 4438 7.807433 TGTCCGAAAATACTTGTCATCAAAATG 59.193 33.333 0.00 0.00 32.87 2.32
4014 4439 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
4015 4440 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
4016 4441 7.975616 CCGAAAATACTTGTCATCAAAATGGAT 59.024 33.333 0.00 0.00 33.42 3.41
4046 4471 7.418840 AGGACGTATCTAGAACTAACATACG 57.581 40.000 19.85 19.85 44.99 3.06
4052 4477 9.404348 CGTATCTAGAACTAACATACGTCTAGA 57.596 37.037 10.27 10.27 38.21 2.43
4059 4484 9.781633 AGAACTAACATACGTCTAGATACATCT 57.218 33.333 0.00 0.00 40.86 2.90
4061 4486 8.550710 ACTAACATACGTCTAGATACATCTCC 57.449 38.462 0.00 0.00 38.32 3.71
4062 4487 8.377034 ACTAACATACGTCTAGATACATCTCCT 58.623 37.037 0.00 0.00 38.32 3.69
4063 4488 9.221933 CTAACATACGTCTAGATACATCTCCTT 57.778 37.037 0.00 0.00 38.32 3.36
4064 4489 8.466617 AACATACGTCTAGATACATCTCCTTT 57.533 34.615 0.00 0.00 38.32 3.11
4065 4490 8.466617 ACATACGTCTAGATACATCTCCTTTT 57.533 34.615 0.00 0.00 38.32 2.27
4066 4491 9.570468 ACATACGTCTAGATACATCTCCTTTTA 57.430 33.333 0.00 0.00 38.32 1.52
4070 4495 9.132923 ACGTCTAGATACATCTCCTTTTATTCA 57.867 33.333 0.00 0.00 38.32 2.57
4084 4509 9.918630 CTCCTTTTATTCATTTTGATGACAAGT 57.081 29.630 0.00 0.00 37.32 3.16
4091 4516 8.915871 ATTCATTTTGATGACAAGTATTTCCG 57.084 30.769 0.00 0.00 37.32 4.30
4092 4517 6.851609 TCATTTTGATGACAAGTATTTCCGG 58.148 36.000 0.00 0.00 37.32 5.14
4093 4518 6.657117 TCATTTTGATGACAAGTATTTCCGGA 59.343 34.615 0.00 0.00 37.32 5.14
4094 4519 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
4095 4520 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
4096 4521 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
4097 4522 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
4098 4523 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
4099 4524 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
4100 4525 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
4101 4526 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
4102 4527 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
4141 4566 5.163343 TGAGGGCCATGTATGTTTACTACTC 60.163 44.000 6.18 0.00 0.00 2.59
4277 4702 3.256631 GGTCCTGATGCAACAATCAACTT 59.743 43.478 0.00 0.00 36.16 2.66
4278 4703 4.458989 GGTCCTGATGCAACAATCAACTTA 59.541 41.667 0.00 0.00 36.16 2.24
4337 4762 1.830279 TCAAATTGAGGCAGGCTCTG 58.170 50.000 23.66 13.97 34.12 3.35
4375 4800 2.363680 ACCTGCAGGATCTGATAACTCG 59.636 50.000 39.19 7.55 38.94 4.18
4441 4866 4.380867 GCATTGTCCATTGTCAGGGTAAAG 60.381 45.833 0.00 0.00 0.00 1.85
4526 4952 8.698854 CAACTTTGCATATAATTTGTTGACGTT 58.301 29.630 0.00 0.00 36.60 3.99
4548 4974 8.803799 ACGTTGCATTTTAAAAAGTAAGAGTTG 58.196 29.630 4.44 0.00 0.00 3.16
4644 5070 6.787225 TCCCCGATGTAAAACAATTTAATCG 58.213 36.000 13.07 13.07 39.07 3.34
4688 5114 6.009589 TCTCATCAATTGTGGTTAATGGTGT 58.990 36.000 5.13 0.00 0.00 4.16
4689 5115 6.150976 TCTCATCAATTGTGGTTAATGGTGTC 59.849 38.462 5.13 0.00 0.00 3.67
4807 5234 3.309121 CCCTATGGTTCCATTTGTCTGGT 60.309 47.826 9.70 0.00 37.57 4.00
4808 5235 4.344104 CCTATGGTTCCATTTGTCTGGTT 58.656 43.478 9.70 0.00 37.57 3.67
4871 5300 3.395639 TCACCCAAATTCACGTGACTAC 58.604 45.455 19.90 0.00 30.52 2.73
4875 5304 2.805671 CCAAATTCACGTGACTACAGCA 59.194 45.455 19.90 1.27 0.00 4.41
4901 5330 6.599244 TGTCCTATTGTTGAGCCTTTCTTATG 59.401 38.462 0.00 0.00 0.00 1.90
4904 5333 7.500227 TCCTATTGTTGAGCCTTTCTTATGATG 59.500 37.037 0.00 0.00 0.00 3.07
4905 5334 7.284034 CCTATTGTTGAGCCTTTCTTATGATGT 59.716 37.037 0.00 0.00 0.00 3.06
4907 5336 6.985188 TGTTGAGCCTTTCTTATGATGTAC 57.015 37.500 0.00 0.00 0.00 2.90
5020 5449 3.055094 TGTTCATTAGGCTTCCCTGAGAC 60.055 47.826 0.00 0.00 42.90 3.36
5073 5502 3.119101 ACACAGCTCCACTCTTAATACGG 60.119 47.826 0.00 0.00 0.00 4.02
5088 5517 0.754217 TACGGCCATAACGCTCCTCT 60.754 55.000 2.24 0.00 34.00 3.69
5095 5524 3.256136 GCCATAACGCTCCTCTATGTAGT 59.744 47.826 0.00 0.00 0.00 2.73
5099 5528 6.761714 CCATAACGCTCCTCTATGTAGTTTTT 59.238 38.462 0.00 0.00 0.00 1.94
5171 5600 2.037251 ACCATGTCTTAACACTGACGCT 59.963 45.455 0.00 0.00 38.48 5.07
5175 5604 3.918591 ATGTCTTAACACTGACGCTAACG 59.081 43.478 0.00 0.00 41.36 3.18
5192 5621 6.146510 ACGCTAACGAAGTGAAAATATGTTGA 59.853 34.615 9.49 0.00 45.00 3.18
5193 5622 6.678663 CGCTAACGAAGTGAAAATATGTTGAG 59.321 38.462 0.00 0.00 45.00 3.02
5282 5716 7.915293 TGAATTGTTTAGTGTCGATACCATT 57.085 32.000 8.86 0.00 0.00 3.16
5500 5934 7.781324 ACCACATACTTGAATTTTCAGGAAT 57.219 32.000 9.14 0.00 38.61 3.01
5737 6172 2.158667 TGTGGAGGGACAAGAAAAGGTC 60.159 50.000 0.00 0.00 0.00 3.85
5860 6295 1.200519 TAATGTCTGGGGGAGAACCG 58.799 55.000 0.00 0.00 41.60 4.44
5863 6298 2.038975 TCTGGGGGAGAACCGGAG 59.961 66.667 9.46 0.00 38.45 4.63
5877 6312 1.752198 CGGAGGTTTCCAGTCCACA 59.248 57.895 0.00 0.00 44.26 4.17
5893 6328 4.816385 AGTCCACATGCTAATAATGAACCG 59.184 41.667 0.00 0.00 0.00 4.44
5947 6382 1.568504 AACGCCAGTCATTAGGGAGA 58.431 50.000 0.00 0.00 0.00 3.71
5976 6411 7.290813 AGTACTTTCAAGGAACCAGAAGAATT 58.709 34.615 0.00 0.00 0.00 2.17
5982 6417 2.095461 GGAACCAGAAGAATTGCTCCC 58.905 52.381 0.00 0.00 0.00 4.30
6010 6445 2.293318 ATCAACTCCCAGCTGGCGA 61.293 57.895 28.39 22.92 0.00 5.54
6043 6478 4.704540 TCAAAGTCAAGGACAGAAAAAGCA 59.295 37.500 0.00 0.00 34.60 3.91
6125 6560 6.820152 TGATAAAGAAGACACATCATCCACAG 59.180 38.462 0.00 0.00 0.00 3.66
6259 6694 3.622163 CAGATGACATTGAGCTTGGTCTC 59.378 47.826 0.00 0.00 0.00 3.36
6319 6754 3.391296 TCATTAGGAAAGGGCGCTATCTT 59.609 43.478 7.64 6.36 0.00 2.40
6352 6787 0.593128 GCAACCATTCGTGCAAGACT 59.407 50.000 0.40 0.00 0.00 3.24
6502 6937 5.212934 GGAAAACACATTTCTCTTCCGAAC 58.787 41.667 1.47 0.00 45.57 3.95
6521 6956 4.628333 CGAACGTGGAATATGTAAAGGTGT 59.372 41.667 0.00 0.00 0.00 4.16
6538 6973 2.489722 GGTGTGATTTGGCTCCTCTTTC 59.510 50.000 0.00 0.00 0.00 2.62
6541 6976 3.072915 TGTGATTTGGCTCCTCTTTCTCA 59.927 43.478 0.00 0.00 0.00 3.27
6561 6996 5.645067 TCTCAAGCATCCAGTTTTACTCATG 59.355 40.000 0.00 0.00 0.00 3.07
6563 6998 6.003326 TCAAGCATCCAGTTTTACTCATGAA 58.997 36.000 0.00 0.00 0.00 2.57
6564 6999 6.489700 TCAAGCATCCAGTTTTACTCATGAAA 59.510 34.615 0.00 0.00 0.00 2.69
6565 7000 6.506500 AGCATCCAGTTTTACTCATGAAAG 57.493 37.500 0.00 0.00 0.00 2.62
6566 7001 5.416952 AGCATCCAGTTTTACTCATGAAAGG 59.583 40.000 0.00 0.00 0.00 3.11
6568 7003 6.071952 GCATCCAGTTTTACTCATGAAAGGAA 60.072 38.462 0.00 0.00 0.00 3.36
6573 7008 7.438160 CCAGTTTTACTCATGAAAGGAAAAACC 59.562 37.037 17.86 6.24 40.01 3.27
6595 7033 7.636150 ACCATCCAATTCTAGTTTCATTCAG 57.364 36.000 0.00 0.00 0.00 3.02
6649 7087 0.608640 CCGTGAGACTTAAGGCAGGT 59.391 55.000 11.83 0.00 0.00 4.00
6748 7186 1.531149 CAGCAAAGTCGTTTGATCGGT 59.469 47.619 2.90 0.00 45.22 4.69
6788 7226 9.258629 ACCCTGTACAGTAACTGTAAATACATA 57.741 33.333 21.18 0.00 46.55 2.29
6799 7237 4.849518 TGTAAATACATAACCCTGCAGCA 58.150 39.130 8.66 0.00 0.00 4.41
6845 7285 1.470051 ACAACCGGCAACTTTCTTGT 58.530 45.000 0.00 0.00 0.00 3.16
6926 7366 1.006086 TGTACATTCGCGCTTGATGG 58.994 50.000 5.56 0.00 0.00 3.51
6960 7400 5.466728 CCATACGGTGACATTTATCCAAGAG 59.533 44.000 0.00 0.00 0.00 2.85
6961 7401 4.553330 ACGGTGACATTTATCCAAGAGT 57.447 40.909 0.00 0.00 0.00 3.24
6987 7427 1.694133 GCCTATCTGGTCTGCAGCCT 61.694 60.000 22.36 9.63 38.35 4.58
6988 7428 0.106335 CCTATCTGGTCTGCAGCCTG 59.894 60.000 22.36 21.36 0.00 4.85
6989 7429 0.829333 CTATCTGGTCTGCAGCCTGT 59.171 55.000 22.36 15.80 0.00 4.00
7007 7447 2.475111 CTGTTGCGCTTCTCTTCGTTTA 59.525 45.455 9.73 0.00 0.00 2.01
7032 7472 3.426787 TTTCTTTGGCTGGTATCGGAA 57.573 42.857 0.00 0.00 0.00 4.30
7036 7476 0.981183 TTGGCTGGTATCGGAAGTGT 59.019 50.000 0.00 0.00 0.00 3.55
7045 7485 4.891168 TGGTATCGGAAGTGTTATAGAGCA 59.109 41.667 0.00 0.00 0.00 4.26
7060 7500 9.306777 TGTTATAGAGCAATCTATCTGATCAGT 57.693 33.333 21.92 12.01 34.94 3.41
7064 7504 7.779754 AGAGCAATCTATCTGATCAGTGTAT 57.220 36.000 21.92 11.15 33.57 2.29
7068 7508 7.172875 AGCAATCTATCTGATCAGTGTATTTGC 59.827 37.037 27.99 27.99 33.57 3.68
7089 7530 1.232621 GGGACGGTTTGGTTCGGAAG 61.233 60.000 0.00 0.00 0.00 3.46
7101 7542 2.819984 TTCGGAAGAGCATGGTGCCC 62.820 60.000 0.00 0.00 46.52 5.36
7129 7570 1.877443 GTATGTGCGGTTGTTTGGAGT 59.123 47.619 0.00 0.00 0.00 3.85
7130 7571 0.951558 ATGTGCGGTTGTTTGGAGTC 59.048 50.000 0.00 0.00 0.00 3.36
7189 7630 6.438763 CATTAGAGGGACAAACAAAACACTC 58.561 40.000 0.00 0.00 33.57 3.51
7214 7655 1.690893 TGCTATGTCCCTGATCAGCTC 59.309 52.381 17.76 9.68 0.00 4.09
7221 7668 2.094182 GTCCCTGATCAGCTCGTTACAA 60.094 50.000 17.76 0.00 0.00 2.41
7226 7673 4.452455 CCTGATCAGCTCGTTACAAAAAGT 59.548 41.667 17.76 0.00 0.00 2.66
7244 7691 5.456192 AAAGTGCGAACAGATTTCTATCG 57.544 39.130 0.00 9.39 37.47 2.92
7249 7696 3.857665 GCGAACAGATTTCTATCGTGTCA 59.142 43.478 13.24 0.00 37.05 3.58
7321 7768 1.329171 TTGTGGTGCTGCTGGCTTTT 61.329 50.000 0.00 0.00 42.39 2.27
7334 7781 4.017126 GCTGGCTTTTCCACCTATAGTTT 58.983 43.478 0.00 0.00 40.72 2.66
7379 7852 2.664402 AATTTGTCCCAGCTGTCTGT 57.336 45.000 13.81 0.00 38.66 3.41
7388 7862 1.995484 CCAGCTGTCTGTCATAACGTG 59.005 52.381 13.81 0.00 38.66 4.49
7513 7988 3.243035 TGTTGGTCGCAAAGAACTGAATG 60.243 43.478 0.00 0.00 37.49 2.67
7521 7996 1.251251 AAGAACTGAATGGTGCCTGC 58.749 50.000 0.00 0.00 0.00 4.85
7535 8010 3.119495 GGTGCCTGCTTTATCATTTCGTT 60.119 43.478 0.00 0.00 0.00 3.85
7538 8013 4.098416 GCCTGCTTTATCATTTCGTTCAC 58.902 43.478 0.00 0.00 0.00 3.18
7555 8030 2.462723 TCACGAGGATCATACAACCCA 58.537 47.619 0.00 0.00 33.17 4.51
7556 8031 2.167693 TCACGAGGATCATACAACCCAC 59.832 50.000 0.00 0.00 33.17 4.61
7557 8032 2.168521 CACGAGGATCATACAACCCACT 59.831 50.000 0.00 0.00 33.17 4.00
7559 8034 2.565841 GAGGATCATACAACCCACTGC 58.434 52.381 0.00 0.00 33.17 4.40
7560 8035 1.915489 AGGATCATACAACCCACTGCA 59.085 47.619 0.00 0.00 0.00 4.41
7561 8036 2.511218 AGGATCATACAACCCACTGCAT 59.489 45.455 0.00 0.00 0.00 3.96
7563 8038 2.877097 TCATACAACCCACTGCATGT 57.123 45.000 0.00 0.00 0.00 3.21
7564 8039 2.710377 TCATACAACCCACTGCATGTC 58.290 47.619 0.00 0.00 0.00 3.06
7565 8040 2.305635 TCATACAACCCACTGCATGTCT 59.694 45.455 0.00 0.00 0.00 3.41
7566 8041 2.183478 TACAACCCACTGCATGTCTG 57.817 50.000 0.00 0.00 0.00 3.51
7568 8043 1.133823 ACAACCCACTGCATGTCTGAA 60.134 47.619 0.00 0.00 0.00 3.02
7569 8044 1.955778 CAACCCACTGCATGTCTGAAA 59.044 47.619 0.00 0.00 0.00 2.69
7570 8045 1.609208 ACCCACTGCATGTCTGAAAC 58.391 50.000 0.00 0.00 0.00 2.78
7571 8046 1.143684 ACCCACTGCATGTCTGAAACT 59.856 47.619 0.00 0.00 0.00 2.66
7572 8047 2.233271 CCCACTGCATGTCTGAAACTT 58.767 47.619 0.00 0.00 0.00 2.66
7573 8048 3.181445 ACCCACTGCATGTCTGAAACTTA 60.181 43.478 0.00 0.00 0.00 2.24
7574 8049 4.012374 CCCACTGCATGTCTGAAACTTAT 58.988 43.478 0.00 0.00 0.00 1.73
7575 8050 5.185454 CCCACTGCATGTCTGAAACTTATA 58.815 41.667 0.00 0.00 0.00 0.98
7576 8051 5.065218 CCCACTGCATGTCTGAAACTTATAC 59.935 44.000 0.00 0.00 0.00 1.47
7577 8052 5.877012 CCACTGCATGTCTGAAACTTATACT 59.123 40.000 0.00 0.00 0.00 2.12
7578 8053 7.041721 CCACTGCATGTCTGAAACTTATACTA 58.958 38.462 0.00 0.00 0.00 1.82
7579 8054 7.010552 CCACTGCATGTCTGAAACTTATACTAC 59.989 40.741 0.00 0.00 0.00 2.73
7580 8055 7.761704 CACTGCATGTCTGAAACTTATACTACT 59.238 37.037 0.00 0.00 0.00 2.57
7651 8568 2.639286 CACGCTTCTGGCAACCAC 59.361 61.111 0.00 0.00 41.91 4.16
7769 8686 1.734465 CGAGCTGGAGGTTGCTAAAAG 59.266 52.381 0.00 0.00 39.91 2.27
7790 8707 0.110373 GGTAGCGAACAAAAGGCACG 60.110 55.000 0.00 0.00 0.00 5.34
7836 8753 3.320673 AAGAGACCGAACATCTCCAAC 57.679 47.619 0.00 0.00 43.15 3.77
7839 8756 1.691976 AGACCGAACATCTCCAACACA 59.308 47.619 0.00 0.00 0.00 3.72
7871 8788 2.535788 CCCGCAAAACGTTCGGACA 61.536 57.895 23.88 0.00 45.53 4.02
7872 8789 1.352404 CCGCAAAACGTTCGGACAA 59.648 52.632 19.07 0.00 45.53 3.18
7882 8799 1.070577 CGTTCGGACAAAGCTGTTCAG 60.071 52.381 0.00 0.00 35.30 3.02
7884 8801 2.808543 GTTCGGACAAAGCTGTTCAGAT 59.191 45.455 3.84 0.00 35.30 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.613630 GACTGGCCCCTCTCCTTGA 60.614 63.158 0.00 0.00 0.00 3.02
1 2 1.908340 CTGACTGGCCCCTCTCCTTG 61.908 65.000 0.00 0.00 0.00 3.61
2 3 1.614824 CTGACTGGCCCCTCTCCTT 60.615 63.158 0.00 0.00 0.00 3.36
25 26 4.776322 CCATGGAGGCGCCGTCAA 62.776 66.667 23.20 13.14 40.66 3.18
120 121 1.074951 GGTGGTCTTTGGGGGTCTG 59.925 63.158 0.00 0.00 0.00 3.51
122 123 0.114364 ATTGGTGGTCTTTGGGGGTC 59.886 55.000 0.00 0.00 0.00 4.46
123 124 0.178935 CATTGGTGGTCTTTGGGGGT 60.179 55.000 0.00 0.00 0.00 4.95
124 125 1.543944 GCATTGGTGGTCTTTGGGGG 61.544 60.000 0.00 0.00 0.00 5.40
125 126 0.831288 TGCATTGGTGGTCTTTGGGG 60.831 55.000 0.00 0.00 0.00 4.96
129 130 1.269012 CCCATGCATTGGTGGTCTTT 58.731 50.000 8.68 0.00 44.83 2.52
132 133 1.983481 TGCCCATGCATTGGTGGTC 60.983 57.895 17.56 0.00 44.23 4.02
145 146 1.915266 CCTGTCTCCTGTCTGCCCA 60.915 63.158 0.00 0.00 0.00 5.36
146 147 2.664081 CCCTGTCTCCTGTCTGCCC 61.664 68.421 0.00 0.00 0.00 5.36
147 148 1.194781 TTCCCTGTCTCCTGTCTGCC 61.195 60.000 0.00 0.00 0.00 4.85
151 152 0.248843 CTGCTTCCCTGTCTCCTGTC 59.751 60.000 0.00 0.00 0.00 3.51
160 161 2.587194 CGGCGATCTGCTTCCCTG 60.587 66.667 0.00 0.00 45.43 4.45
161 162 3.854669 CCGGCGATCTGCTTCCCT 61.855 66.667 9.30 0.00 45.43 4.20
177 178 2.665603 GTGCTGGTGGTCCTCTCC 59.334 66.667 0.00 0.00 34.23 3.71
196 197 3.782523 TGATGATAAGTGGCTTCCCTCTT 59.217 43.478 3.03 3.03 44.69 2.85
205 206 2.627945 TCAACGGTGATGATAAGTGGC 58.372 47.619 0.00 0.00 0.00 5.01
210 211 4.141801 CCCCTACTTCAACGGTGATGATAA 60.142 45.833 21.91 6.92 33.99 1.75
214 215 1.553248 TCCCCTACTTCAACGGTGATG 59.447 52.381 14.33 14.33 35.53 3.07
220 221 0.391263 GGTGCTCCCCTACTTCAACG 60.391 60.000 0.00 0.00 0.00 4.10
223 224 1.987855 CCGGTGCTCCCCTACTTCA 60.988 63.158 0.00 0.00 0.00 3.02
266 267 1.363807 GGCTTGGTTTGGCAGACAC 59.636 57.895 10.57 0.50 0.00 3.67
279 280 4.047059 CTTGCGGTGGCTGGCTTG 62.047 66.667 2.00 0.00 40.82 4.01
323 324 0.915872 TGGCAGATCCCTGTGATGGT 60.916 55.000 0.00 0.00 42.35 3.55
326 327 1.639635 GGGTGGCAGATCCCTGTGAT 61.640 60.000 4.45 0.00 42.35 3.06
329 330 3.402681 CGGGTGGCAGATCCCTGT 61.403 66.667 9.72 0.00 42.35 4.00
511 514 3.608662 TTTCGTGACGGCGACCCT 61.609 61.111 16.62 0.00 40.85 4.34
515 518 1.597797 ATAGGGTTTCGTGACGGCGA 61.598 55.000 16.62 0.00 39.28 5.54
547 550 2.915659 ACCAGGCTGACGAACGGA 60.916 61.111 17.94 0.00 0.00 4.69
549 552 2.805353 CGACCAGGCTGACGAACG 60.805 66.667 17.94 9.85 0.00 3.95
552 556 3.749064 GCTCGACCAGGCTGACGA 61.749 66.667 25.51 25.51 0.00 4.20
596 600 4.111053 GGCGGGACCTTTCTCCCC 62.111 72.222 0.00 0.00 46.90 4.81
667 672 2.204306 CCCCTCCACCTTCCCCTT 60.204 66.667 0.00 0.00 0.00 3.95
701 707 4.508128 TTGGGAGGCGACGCGATC 62.508 66.667 15.93 13.99 0.00 3.69
702 708 4.514577 CTTGGGAGGCGACGCGAT 62.515 66.667 15.93 4.61 0.00 4.58
754 761 4.354943 CTCACCCCTCCCACCCCT 62.355 72.222 0.00 0.00 0.00 4.79
756 763 4.677151 ACCTCACCCCTCCCACCC 62.677 72.222 0.00 0.00 0.00 4.61
758 765 1.074951 CAAACCTCACCCCTCCCAC 59.925 63.158 0.00 0.00 0.00 4.61
759 766 0.996762 AACAAACCTCACCCCTCCCA 60.997 55.000 0.00 0.00 0.00 4.37
767 774 3.502191 TCAAAGTGCAACAAACCTCAC 57.498 42.857 0.00 0.00 41.43 3.51
768 775 3.698539 TGATCAAAGTGCAACAAACCTCA 59.301 39.130 0.00 0.00 41.43 3.86
769 776 4.202050 ACTGATCAAAGTGCAACAAACCTC 60.202 41.667 0.00 0.00 41.43 3.85
770 777 3.701040 ACTGATCAAAGTGCAACAAACCT 59.299 39.130 0.00 0.00 41.43 3.50
771 778 4.045636 ACTGATCAAAGTGCAACAAACC 57.954 40.909 0.00 0.00 41.43 3.27
776 783 3.243643 GCAACAACTGATCAAAGTGCAAC 59.756 43.478 0.00 0.00 0.00 4.17
805 812 7.863375 GTGTGCCTCAGTATGTAGTATAAGAAG 59.137 40.741 0.00 0.00 37.40 2.85
815 822 3.769300 ACAGATGTGTGCCTCAGTATGTA 59.231 43.478 0.00 0.00 34.75 2.29
823 830 5.665459 AGTAATAGAACAGATGTGTGCCTC 58.335 41.667 0.00 0.00 36.84 4.70
900 907 1.202794 TCACTCCACAAAGCTCATGCA 60.203 47.619 0.00 0.00 42.74 3.96
901 908 1.527034 TCACTCCACAAAGCTCATGC 58.473 50.000 0.00 0.00 40.05 4.06
1172 1179 4.501915 CCTTTTCTGGATCTTTGCTTGCAA 60.502 41.667 3.70 3.70 0.00 4.08
1256 1263 8.494433 TGTTATCTAATGTAAGCTTCCCAGAAT 58.506 33.333 0.00 0.00 0.00 2.40
1287 1294 3.181469 ACTGTTCACCTGAAACGCTTCTA 60.181 43.478 0.00 0.00 35.58 2.10
1744 1751 5.450137 GGCATCAAATGGAATGAGTTCAGAG 60.450 44.000 0.00 0.00 36.01 3.35
1865 1872 5.449553 CTTAAATATGGGCTCCACTTTCCT 58.550 41.667 0.00 0.00 35.80 3.36
1920 1927 3.096852 ACCCAAGTAGATGTGATGTCGA 58.903 45.455 0.00 0.00 0.00 4.20
1924 1931 3.634397 ACCACCCAAGTAGATGTGATG 57.366 47.619 0.00 0.00 0.00 3.07
2027 2034 0.318784 GATCATCGTAGCGACCACCC 60.319 60.000 0.00 0.00 39.18 4.61
2126 2133 8.409358 AACTAAATTGCTCAATACAGGAAGTT 57.591 30.769 0.00 0.00 36.25 2.66
2159 2166 8.437742 TCCGTAATTTTCTAATTCGTCACTTTC 58.562 33.333 0.00 0.00 35.61 2.62
2167 2174 6.047231 ACTCCCTCCGTAATTTTCTAATTCG 58.953 40.000 0.00 0.00 35.61 3.34
2226 2262 4.678509 TCCTAACAACATTGCATTCGAC 57.321 40.909 0.00 0.00 0.00 4.20
2267 2303 4.017808 CCCGATCCTAGATCCGATTAACT 58.982 47.826 0.00 0.00 0.00 2.24
2268 2304 3.429135 GCCCGATCCTAGATCCGATTAAC 60.429 52.174 0.00 0.00 0.00 2.01
2289 2337 1.896220 TAATGATTCGATGGCCTGGC 58.104 50.000 11.05 11.05 0.00 4.85
2290 2338 5.458041 AAAATAATGATTCGATGGCCTGG 57.542 39.130 3.32 0.00 0.00 4.45
2291 2339 6.016360 TGGTAAAATAATGATTCGATGGCCTG 60.016 38.462 3.32 0.00 0.00 4.85
2292 2340 6.068010 TGGTAAAATAATGATTCGATGGCCT 58.932 36.000 3.32 0.00 0.00 5.19
2342 2390 9.559958 AGATTTGCGTAAATGACTCATTTTTAG 57.440 29.630 19.72 13.09 40.60 1.85
2399 2447 7.062956 GTGTTCCCAGTTTACAAAAGAAACAAG 59.937 37.037 1.54 0.00 38.91 3.16
2402 2450 6.627243 AGTGTTCCCAGTTTACAAAAGAAAC 58.373 36.000 0.00 0.00 37.11 2.78
2406 2454 6.863275 AGAAAGTGTTCCCAGTTTACAAAAG 58.137 36.000 0.00 0.00 42.82 2.27
2528 2576 5.661458 CCTTGTACATGTCACCCTAAGTAG 58.339 45.833 0.00 0.00 0.00 2.57
2540 2588 5.351948 AAACCTTTTTGCCTTGTACATGT 57.648 34.783 2.69 2.69 0.00 3.21
2621 2669 9.998106 AACTGTACATGTCAGTACTTTTAGATT 57.002 29.630 22.74 8.02 44.03 2.40
2622 2670 9.998106 AAACTGTACATGTCAGTACTTTTAGAT 57.002 29.630 22.74 8.54 44.03 1.98
2669 2998 9.574516 ACTTTTGGATTAGTAAACTGATGAGTT 57.425 29.630 0.00 0.00 44.79 3.01
2836 3249 7.913674 ACTCAGGAAAGATGTAAAGATGAAC 57.086 36.000 0.00 0.00 0.00 3.18
2839 3252 9.442047 AAACTACTCAGGAAAGATGTAAAGATG 57.558 33.333 0.00 0.00 0.00 2.90
2885 3298 4.692228 TCCTAAAAAGTGCAGGCAAAAAG 58.308 39.130 0.00 0.00 0.00 2.27
2902 3315 4.594970 CCACCCACACATACAATTCCTAA 58.405 43.478 0.00 0.00 0.00 2.69
2919 3332 1.757682 TAACAATTCCATCGCCACCC 58.242 50.000 0.00 0.00 0.00 4.61
2972 3385 3.565307 TGACAGAGAGGCCAACAAAAAT 58.435 40.909 5.01 0.00 0.00 1.82
3036 3449 4.107127 AGGACTGACGCTAGGATTATCT 57.893 45.455 0.00 0.00 0.00 1.98
3048 3461 5.713792 AATCCAGATGTATAGGACTGACG 57.286 43.478 0.00 0.00 33.57 4.35
3101 3523 2.178474 CACAAACTGACACTGTGTGC 57.822 50.000 19.62 10.40 36.98 4.57
3109 3531 2.136298 TCCCAAAGCACAAACTGACA 57.864 45.000 0.00 0.00 0.00 3.58
3110 3532 3.068024 TGAATCCCAAAGCACAAACTGAC 59.932 43.478 0.00 0.00 0.00 3.51
3156 3578 1.051008 ATGAGGATGTGCTATGGCGA 58.949 50.000 0.00 0.00 42.25 5.54
3235 3657 9.150348 TGTACTAATCCATTAATATGCATGTCG 57.850 33.333 10.16 0.00 0.00 4.35
3286 3708 5.367945 TGGGAAAAGAACTGTACTCTTGT 57.632 39.130 0.00 0.00 33.40 3.16
3287 3709 4.757149 CCTGGGAAAAGAACTGTACTCTTG 59.243 45.833 0.00 0.00 33.40 3.02
3305 3727 0.179100 CTATGCGACACTGTCCTGGG 60.179 60.000 3.50 0.00 0.00 4.45
3683 4105 6.575162 AAGAGTGTGGATTTTGTACATTCC 57.425 37.500 11.29 11.29 33.23 3.01
3719 4141 2.175202 TGTGCCAACCTCTTTGTTGTT 58.825 42.857 3.54 0.00 43.22 2.83
3725 4147 2.110011 AGGGTATTGTGCCAACCTCTTT 59.890 45.455 0.00 0.00 33.59 2.52
3735 4157 6.095377 CAGAATTTCTTTCAGGGTATTGTGC 58.905 40.000 0.00 0.00 36.75 4.57
3776 4198 9.623000 GGTTAAGTTAGGGAGCTAAAATATTGA 57.377 33.333 0.00 0.00 0.00 2.57
3781 4203 6.185511 GTGGGTTAAGTTAGGGAGCTAAAAT 58.814 40.000 0.00 0.00 0.00 1.82
3799 4221 2.319025 AATTTCCAATCGGGTGGGTT 57.681 45.000 5.58 0.00 39.34 4.11
3806 4228 5.527582 CCTGAACCTAGTAATTTCCAATCGG 59.472 44.000 0.00 0.00 0.00 4.18
3814 4236 8.621073 AGATAAAACCCCTGAACCTAGTAATTT 58.379 33.333 0.00 0.00 0.00 1.82
3845 4267 3.868077 TGGTGTATGCAAACTTTTTGTGC 59.132 39.130 0.00 0.00 38.78 4.57
3848 4270 8.761575 AGAATATGGTGTATGCAAACTTTTTG 57.238 30.769 0.00 0.00 0.00 2.44
3936 4360 7.649057 ACTACTGAACAATTTAAACCTTCTGC 58.351 34.615 0.00 0.00 0.00 4.26
3978 4403 4.607239 AGTATTTTCGGACAGAGGGAGTA 58.393 43.478 0.00 0.00 0.00 2.59
3979 4404 3.442076 AGTATTTTCGGACAGAGGGAGT 58.558 45.455 0.00 0.00 0.00 3.85
3980 4405 4.184629 CAAGTATTTTCGGACAGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
3981 4406 3.581332 ACAAGTATTTTCGGACAGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
3982 4407 3.933332 GACAAGTATTTTCGGACAGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
3983 4408 4.566004 TGACAAGTATTTTCGGACAGAGG 58.434 43.478 0.00 0.00 0.00 3.69
3984 4409 5.869344 TGATGACAAGTATTTTCGGACAGAG 59.131 40.000 0.00 0.00 0.00 3.35
3985 4410 5.789521 TGATGACAAGTATTTTCGGACAGA 58.210 37.500 0.00 0.00 0.00 3.41
3986 4411 6.480524 TTGATGACAAGTATTTTCGGACAG 57.519 37.500 0.00 0.00 0.00 3.51
3987 4412 6.869315 TTTGATGACAAGTATTTTCGGACA 57.131 33.333 0.00 0.00 37.32 4.02
3988 4413 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
3989 4414 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
3990 4415 7.312154 TCCATTTTGATGACAAGTATTTTCGG 58.688 34.615 0.00 0.00 37.32 4.30
3991 4416 8.915871 ATCCATTTTGATGACAAGTATTTTCG 57.084 30.769 0.00 0.00 37.32 3.46
4020 4445 8.341173 CGTATGTTAGTTCTAGATACGTCCTTT 58.659 37.037 10.30 0.00 37.92 3.11
4021 4446 7.859598 CGTATGTTAGTTCTAGATACGTCCTT 58.140 38.462 10.30 0.00 37.92 3.36
4022 4447 7.418840 CGTATGTTAGTTCTAGATACGTCCT 57.581 40.000 10.30 0.00 37.92 3.85
4026 4451 9.404348 TCTAGACGTATGTTAGTTCTAGATACG 57.596 37.037 14.94 14.94 44.64 3.06
4033 4458 9.781633 AGATGTATCTAGACGTATGTTAGTTCT 57.218 33.333 0.00 0.00 34.85 3.01
4035 4460 9.001542 GGAGATGTATCTAGACGTATGTTAGTT 57.998 37.037 0.00 0.00 37.25 2.24
4036 4461 8.377034 AGGAGATGTATCTAGACGTATGTTAGT 58.623 37.037 0.00 0.00 37.25 2.24
4037 4462 8.780846 AGGAGATGTATCTAGACGTATGTTAG 57.219 38.462 0.00 0.00 37.25 2.34
4038 4463 9.570468 AAAGGAGATGTATCTAGACGTATGTTA 57.430 33.333 0.00 0.00 37.25 2.41
4039 4464 8.466617 AAAGGAGATGTATCTAGACGTATGTT 57.533 34.615 0.00 0.00 37.25 2.71
4040 4465 8.466617 AAAAGGAGATGTATCTAGACGTATGT 57.533 34.615 0.00 0.00 37.25 2.29
4044 4469 9.132923 TGAATAAAAGGAGATGTATCTAGACGT 57.867 33.333 0.00 0.00 37.25 4.34
4058 4483 9.918630 ACTTGTCATCAAAATGAATAAAAGGAG 57.081 29.630 0.00 0.00 43.42 3.69
4066 4491 7.975616 CCGGAAATACTTGTCATCAAAATGAAT 59.024 33.333 0.00 0.00 43.42 2.57
4067 4492 7.175816 TCCGGAAATACTTGTCATCAAAATGAA 59.824 33.333 0.00 0.00 43.42 2.57
4068 4493 6.657117 TCCGGAAATACTTGTCATCAAAATGA 59.343 34.615 0.00 0.00 39.63 2.57
4069 4494 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
4070 4495 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
4071 4496 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
4072 4497 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
4073 4498 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
4074 4499 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
4075 4500 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
4076 4501 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
4077 4502 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
4078 4503 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
4079 4504 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
4080 4505 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
4081 4506 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
4082 4507 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
4083 4508 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
4084 4509 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
4085 4510 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
4086 4511 0.251742 TTACTCCCTCCGTCCGGAAA 60.252 55.000 5.23 0.00 44.66 3.13
4087 4512 0.032813 ATTACTCCCTCCGTCCGGAA 60.033 55.000 5.23 0.00 44.66 4.30
4088 4513 0.466922 GATTACTCCCTCCGTCCGGA 60.467 60.000 0.00 0.00 42.90 5.14
4089 4514 0.467659 AGATTACTCCCTCCGTCCGG 60.468 60.000 0.00 0.00 0.00 5.14
4090 4515 1.400737 AAGATTACTCCCTCCGTCCG 58.599 55.000 0.00 0.00 0.00 4.79
4091 4516 4.161001 TGTTAAAGATTACTCCCTCCGTCC 59.839 45.833 0.00 0.00 0.00 4.79
4092 4517 5.334724 TGTTAAAGATTACTCCCTCCGTC 57.665 43.478 0.00 0.00 0.00 4.79
4093 4518 5.952347 ATGTTAAAGATTACTCCCTCCGT 57.048 39.130 0.00 0.00 0.00 4.69
4094 4519 6.821665 TCAAATGTTAAAGATTACTCCCTCCG 59.178 38.462 0.00 0.00 0.00 4.63
4095 4520 7.283354 CCTCAAATGTTAAAGATTACTCCCTCC 59.717 40.741 0.00 0.00 0.00 4.30
4096 4521 7.283354 CCCTCAAATGTTAAAGATTACTCCCTC 59.717 40.741 0.00 0.00 0.00 4.30
4097 4522 7.119387 CCCTCAAATGTTAAAGATTACTCCCT 58.881 38.462 0.00 0.00 0.00 4.20
4098 4523 6.183360 GCCCTCAAATGTTAAAGATTACTCCC 60.183 42.308 0.00 0.00 0.00 4.30
4099 4524 6.183360 GGCCCTCAAATGTTAAAGATTACTCC 60.183 42.308 0.00 0.00 0.00 3.85
4100 4525 6.377146 TGGCCCTCAAATGTTAAAGATTACTC 59.623 38.462 0.00 0.00 0.00 2.59
4101 4526 6.252995 TGGCCCTCAAATGTTAAAGATTACT 58.747 36.000 0.00 0.00 0.00 2.24
4102 4527 6.524101 TGGCCCTCAAATGTTAAAGATTAC 57.476 37.500 0.00 0.00 0.00 1.89
4141 4566 8.778358 GTGCTCATGGAAATATAAAGGTTAGAG 58.222 37.037 0.00 0.00 0.00 2.43
4277 4702 7.236529 AGACCATTGAGTACCTACGGAATATA 58.763 38.462 0.00 0.00 0.00 0.86
4278 4703 6.075984 AGACCATTGAGTACCTACGGAATAT 58.924 40.000 0.00 0.00 0.00 1.28
4375 4800 1.338020 CCCAAGACTGTCCAAACAAGC 59.662 52.381 3.76 0.00 34.24 4.01
4644 5070 7.849804 TGAGATTTAGCTGAACCTAATTCAC 57.150 36.000 0.00 0.00 42.62 3.18
4688 5114 3.769739 ACTGGCATTTCAGTGTACAGA 57.230 42.857 0.00 0.00 45.27 3.41
4689 5115 4.572389 GGATACTGGCATTTCAGTGTACAG 59.428 45.833 0.00 0.00 46.29 2.74
4770 5197 3.244700 CCATAGGGAGGGCAGACAATTAG 60.245 52.174 0.00 0.00 35.59 1.73
4807 5234 4.225042 ACATTAGGGCAGTGACATACAGAA 59.775 41.667 0.00 0.00 0.00 3.02
4808 5235 3.774766 ACATTAGGGCAGTGACATACAGA 59.225 43.478 0.00 0.00 0.00 3.41
4871 5300 2.357009 GGCTCAACAATAGGACATGCTG 59.643 50.000 0.00 0.00 0.00 4.41
4875 5304 5.184892 AGAAAGGCTCAACAATAGGACAT 57.815 39.130 0.00 0.00 0.00 3.06
5073 5502 2.821991 ACATAGAGGAGCGTTATGGC 57.178 50.000 0.00 0.00 0.00 4.40
5103 5532 8.575589 ACAATAACACAGTAATGCAGAATTGAA 58.424 29.630 12.76 0.00 0.00 2.69
5104 5533 8.109705 ACAATAACACAGTAATGCAGAATTGA 57.890 30.769 12.76 0.00 0.00 2.57
5105 5534 8.022550 TGACAATAACACAGTAATGCAGAATTG 58.977 33.333 0.00 0.00 0.00 2.32
5106 5535 8.109705 TGACAATAACACAGTAATGCAGAATT 57.890 30.769 0.00 0.00 0.00 2.17
5171 5600 6.653320 AGGCTCAACATATTTTCACTTCGTTA 59.347 34.615 0.00 0.00 0.00 3.18
5175 5604 6.259550 ACAGGCTCAACATATTTTCACTTC 57.740 37.500 0.00 0.00 0.00 3.01
5192 5621 3.077484 AGCAAACATGACATACAGGCT 57.923 42.857 0.00 0.00 33.22 4.58
5193 5622 5.066375 TCAATAGCAAACATGACATACAGGC 59.934 40.000 0.00 0.00 33.22 4.85
5282 5716 9.703892 ACAATAAAGTTGCAAGCACAATAATTA 57.296 25.926 0.00 0.00 0.00 1.40
5469 5903 6.677781 AAATTCAAGTATGTGGTACCATCG 57.322 37.500 19.72 2.06 33.58 3.84
5544 5979 5.587844 ACTGCAGCAGATAAATGGAAACTAG 59.412 40.000 29.70 0.00 35.18 2.57
5545 5980 5.500234 ACTGCAGCAGATAAATGGAAACTA 58.500 37.500 29.70 0.00 35.18 2.24
5737 6172 4.392619 GTCATAGAGGTCTGACGTATCG 57.607 50.000 2.59 0.00 33.14 2.92
5860 6295 1.826385 CATGTGGACTGGAAACCTCC 58.174 55.000 0.00 0.00 42.81 4.30
5863 6298 2.489938 TAGCATGTGGACTGGAAACC 57.510 50.000 0.00 0.00 0.00 3.27
5869 6304 5.277490 CGGTTCATTATTAGCATGTGGACTG 60.277 44.000 0.00 0.00 0.00 3.51
5877 6312 6.349300 AGTTCAGACGGTTCATTATTAGCAT 58.651 36.000 0.00 0.00 0.00 3.79
5893 6328 0.316196 GTGCACGCACAAGTTCAGAC 60.316 55.000 17.03 0.00 45.53 3.51
5947 6382 5.751586 TCTGGTTCCTTGAAAGTACTTGTT 58.248 37.500 9.34 0.00 0.00 2.83
5976 6411 2.041762 ATGCCTGAGGAGGGAGCA 59.958 61.111 0.65 0.00 44.14 4.26
5982 6417 0.179936 GGGAGTTGATGCCTGAGGAG 59.820 60.000 0.65 0.00 36.22 3.69
6010 6445 6.070656 TGTCCTTGACTTTGATTTGGATCTT 58.929 36.000 0.00 0.00 33.15 2.40
6043 6478 0.698238 TAGCAGTCAAACCTGGCCAT 59.302 50.000 5.51 0.00 32.92 4.40
6094 6529 9.317936 GATGATGTGTCTTCTTTATCATGTGTA 57.682 33.333 0.00 0.00 38.28 2.90
6125 6560 1.743996 GCAGGTCCAGGATCTGAAAC 58.256 55.000 31.32 11.62 42.86 2.78
6162 6597 1.213296 TTTAGGCTCCAGATCCCACC 58.787 55.000 0.00 0.00 0.00 4.61
6170 6605 5.246981 TGATTATCCCATTTAGGCTCCAG 57.753 43.478 0.00 0.00 35.39 3.86
6259 6694 3.515901 AGCTTGGGACTAGTTCCTTAGTG 59.484 47.826 21.31 7.73 45.09 2.74
6352 6787 3.135712 TCTGGGAACTTAAACTCTGCACA 59.864 43.478 0.00 0.00 0.00 4.57
6502 6937 6.677781 AATCACACCTTTACATATTCCACG 57.322 37.500 0.00 0.00 0.00 4.94
6521 6956 4.330250 CTTGAGAAAGAGGAGCCAAATCA 58.670 43.478 0.00 0.00 0.00 2.57
6538 6973 5.645067 TCATGAGTAAAACTGGATGCTTGAG 59.355 40.000 0.00 0.00 0.00 3.02
6541 6976 6.071728 CCTTTCATGAGTAAAACTGGATGCTT 60.072 38.462 0.00 0.00 0.00 3.91
6561 6996 7.896811 ACTAGAATTGGATGGTTTTTCCTTTC 58.103 34.615 0.00 0.00 37.07 2.62
6563 6998 7.855784 AACTAGAATTGGATGGTTTTTCCTT 57.144 32.000 0.00 0.00 37.07 3.36
6564 6999 7.508977 TGAAACTAGAATTGGATGGTTTTTCCT 59.491 33.333 0.00 0.00 37.07 3.36
6565 7000 7.666623 TGAAACTAGAATTGGATGGTTTTTCC 58.333 34.615 0.00 0.00 0.00 3.13
6566 7001 9.710900 AATGAAACTAGAATTGGATGGTTTTTC 57.289 29.630 0.00 0.00 0.00 2.29
6568 7003 8.869109 TGAATGAAACTAGAATTGGATGGTTTT 58.131 29.630 0.00 0.00 0.00 2.43
6573 7008 8.733458 TCAACTGAATGAAACTAGAATTGGATG 58.267 33.333 0.00 0.00 0.00 3.51
6595 7033 2.566952 AAGCACAGCAGTTTGTCAAC 57.433 45.000 0.00 0.00 0.00 3.18
6649 7087 2.503765 ACACCCATCATGTGTATTCGGA 59.496 45.455 0.00 0.00 44.73 4.55
6748 7186 0.541764 CAGGGTTTTTGGCTGGCCTA 60.542 55.000 13.05 2.16 36.94 3.93
6788 7226 3.482156 CAGATATAGTGCTGCAGGGTT 57.518 47.619 17.12 0.00 0.00 4.11
6799 7237 6.058183 GTGTGAATTTCCAGGCAGATATAGT 58.942 40.000 0.00 0.00 0.00 2.12
6845 7285 5.241403 TCTGGATGCAGAGGTAAAAAGAA 57.759 39.130 13.58 0.00 0.00 2.52
6917 7357 1.135315 CACTTTCGGCCATCAAGCG 59.865 57.895 2.24 0.00 0.00 4.68
6926 7366 1.743995 ACCGTATGGCACTTTCGGC 60.744 57.895 17.01 0.00 44.17 5.54
6939 7379 5.670792 ACTCTTGGATAAATGTCACCGTA 57.329 39.130 0.00 0.00 0.00 4.02
6960 7400 3.623510 GCAGACCAGATAGGCTTTACAAC 59.376 47.826 0.00 0.00 43.14 3.32
6961 7401 3.263170 TGCAGACCAGATAGGCTTTACAA 59.737 43.478 0.00 0.00 43.14 2.41
6987 7427 1.295792 AAACGAAGAGAAGCGCAACA 58.704 45.000 11.47 0.00 0.00 3.33
6988 7428 2.722100 GCTAAACGAAGAGAAGCGCAAC 60.722 50.000 11.47 2.34 0.00 4.17
6989 7429 1.459592 GCTAAACGAAGAGAAGCGCAA 59.540 47.619 11.47 0.00 0.00 4.85
7032 7472 9.306777 TGATCAGATAGATTGCTCTATAACACT 57.693 33.333 0.00 0.00 43.35 3.55
7036 7476 9.306777 ACACTGATCAGATAGATTGCTCTATAA 57.693 33.333 29.27 0.00 43.35 0.98
7045 7485 6.648310 CCGCAAATACACTGATCAGATAGATT 59.352 38.462 29.27 17.45 37.00 2.40
7060 7500 0.250814 AAACCGTCCCCGCAAATACA 60.251 50.000 0.00 0.00 0.00 2.29
7064 7504 2.907917 CCAAACCGTCCCCGCAAA 60.908 61.111 0.00 0.00 0.00 3.68
7068 7508 3.045492 CGAACCAAACCGTCCCCG 61.045 66.667 0.00 0.00 0.00 5.73
7079 7520 0.321564 CACCATGCTCTTCCGAACCA 60.322 55.000 0.00 0.00 0.00 3.67
7080 7521 1.648467 GCACCATGCTCTTCCGAACC 61.648 60.000 0.00 0.00 40.96 3.62
7101 7542 2.124736 CCGCACATACCAGGGGTG 60.125 66.667 0.00 4.27 36.19 4.61
7111 7552 0.951558 GACTCCAAACAACCGCACAT 59.048 50.000 0.00 0.00 0.00 3.21
7179 7620 4.151883 ACATAGCATTGGGAGTGTTTTGT 58.848 39.130 0.00 0.00 0.00 2.83
7189 7630 2.107031 TGATCAGGGACATAGCATTGGG 59.893 50.000 0.00 0.00 0.00 4.12
7214 7655 3.930618 TCTGTTCGCACTTTTTGTAACG 58.069 40.909 0.00 0.00 0.00 3.18
7221 7668 5.408604 ACGATAGAAATCTGTTCGCACTTTT 59.591 36.000 13.91 0.00 36.82 2.27
7226 7673 3.845178 ACACGATAGAAATCTGTTCGCA 58.155 40.909 13.91 0.00 36.82 5.10
7244 7691 3.814005 ACTATACCGGGAACATGACAC 57.186 47.619 6.32 0.00 0.00 3.67
7249 7696 7.093024 CCAAATCCTATACTATACCGGGAACAT 60.093 40.741 6.32 0.00 0.00 2.71
7334 7781 7.542890 ACAACTCAATACATCACACACAAAAA 58.457 30.769 0.00 0.00 0.00 1.94
7339 7786 9.117145 CAAATTACAACTCAATACATCACACAC 57.883 33.333 0.00 0.00 0.00 3.82
7340 7787 8.845227 ACAAATTACAACTCAATACATCACACA 58.155 29.630 0.00 0.00 0.00 3.72
7379 7852 8.731275 AAGATTTATGATCCAACACGTTATGA 57.269 30.769 0.00 0.00 0.00 2.15
7502 7977 1.202976 AGCAGGCACCATTCAGTTCTT 60.203 47.619 0.00 0.00 0.00 2.52
7513 7988 2.423538 ACGAAATGATAAAGCAGGCACC 59.576 45.455 0.00 0.00 0.00 5.01
7535 8010 2.167693 GTGGGTTGTATGATCCTCGTGA 59.832 50.000 0.00 0.00 0.00 4.35
7538 8013 2.826428 CAGTGGGTTGTATGATCCTCG 58.174 52.381 0.00 0.00 0.00 4.63
7544 8019 2.305635 AGACATGCAGTGGGTTGTATGA 59.694 45.455 10.33 0.00 41.80 2.15
7555 8030 7.841956 AGTAGTATAAGTTTCAGACATGCAGT 58.158 34.615 0.00 0.00 0.00 4.40
7556 8031 9.239002 GTAGTAGTATAAGTTTCAGACATGCAG 57.761 37.037 0.00 0.00 0.00 4.41
7557 8032 8.967918 AGTAGTAGTATAAGTTTCAGACATGCA 58.032 33.333 0.00 0.00 0.00 3.96
7602 8513 3.252458 GGTTTGTCCAACGCTTTACAGAT 59.748 43.478 0.00 0.00 36.05 2.90
7769 8686 0.891904 TGCCTTTTGTTCGCTACCCC 60.892 55.000 0.00 0.00 0.00 4.95
7790 8707 1.696832 GGAAGAGTCGCAATCGCCAC 61.697 60.000 0.00 0.00 35.26 5.01
7836 8753 1.743772 CGGGCTATTTGAGGGTCTGTG 60.744 57.143 0.00 0.00 0.00 3.66
7839 8756 1.271840 TGCGGGCTATTTGAGGGTCT 61.272 55.000 0.00 0.00 0.00 3.85
7871 8788 3.382546 ACAAAGTGCATCTGAACAGCTTT 59.617 39.130 0.00 0.00 0.00 3.51
7872 8789 2.954318 ACAAAGTGCATCTGAACAGCTT 59.046 40.909 0.00 0.00 0.00 3.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.