Multiple sequence alignment - TraesCS1B01G199400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G199400 chr1B 100.000 6614 0 0 1 6614 357433452 357426839 0.000000e+00 12214.0
1 TraesCS1B01G199400 chr1B 92.437 238 16 2 558 795 634262632 634262867 8.220000e-89 339.0
2 TraesCS1B01G199400 chr1B 93.023 86 6 0 5360 5445 418815059 418814974 6.960000e-25 126.0
3 TraesCS1B01G199400 chr1B 91.176 68 6 0 5384 5451 171232597 171232530 7.060000e-15 93.5
4 TraesCS1B01G199400 chr1A 97.092 1857 48 4 2242 4098 327527134 327528984 0.000000e+00 3125.0
5 TraesCS1B01G199400 chr1A 95.437 1315 47 10 932 2238 327525714 327527023 0.000000e+00 2084.0
6 TraesCS1B01G199400 chr1A 94.974 1174 38 7 5452 6610 327529028 327530195 0.000000e+00 1821.0
7 TraesCS1B01G199400 chr1A 92.963 270 19 0 1 270 474168356 474168087 1.730000e-105 394.0
8 TraesCS1B01G199400 chr1A 89.668 271 28 0 295 565 563782728 563782998 4.910000e-91 346.0
9 TraesCS1B01G199400 chr1A 91.736 242 18 2 558 799 78958810 78959049 1.060000e-87 335.0
10 TraesCS1B01G199400 chr1D 93.902 1886 59 19 802 2638 255488266 255490144 0.000000e+00 2795.0
11 TraesCS1B01G199400 chr1D 98.256 1376 20 1 2723 4098 255490136 255491507 0.000000e+00 2405.0
12 TraesCS1B01G199400 chr1D 93.782 1174 42 7 5452 6609 255491551 255492709 0.000000e+00 1735.0
13 TraesCS1B01G199400 chr7B 99.121 1251 7 4 4090 5340 466267845 466269091 0.000000e+00 2246.0
14 TraesCS1B01G199400 chr7B 92.887 239 15 2 558 796 693018994 693019230 4.910000e-91 346.0
15 TraesCS1B01G199400 chr7B 88.561 271 31 0 295 565 206447938 206448208 4.940000e-86 329.0
16 TraesCS1B01G199400 chr7A 99.198 1247 6 4 4094 5340 81948474 81947232 0.000000e+00 2244.0
17 TraesCS1B01G199400 chr7A 97.407 270 7 0 1 270 499734913 499734644 1.680000e-125 460.0
18 TraesCS1B01G199400 chr7A 96.748 246 8 0 295 540 499734675 499734430 1.720000e-110 411.0
19 TraesCS1B01G199400 chr7A 92.963 270 19 0 1 270 148536576 148536845 1.730000e-105 394.0
20 TraesCS1B01G199400 chr7A 86.765 272 31 3 295 565 148536814 148537081 1.390000e-76 298.0
21 TraesCS1B01G199400 chr7A 93.814 97 6 0 5360 5456 303970167 303970263 5.340000e-31 147.0
22 TraesCS1B01G199400 chr6B 99.198 1247 7 3 4094 5340 523487995 523489238 0.000000e+00 2244.0
23 TraesCS1B01G199400 chr6B 97.407 270 7 0 1 270 132946411 132946680 1.680000e-125 460.0
24 TraesCS1B01G199400 chr6B 93.727 271 10 1 295 565 132946649 132946912 3.720000e-107 399.0
25 TraesCS1B01G199400 chr6B 90.775 271 25 0 295 565 529894570 529894300 4.870000e-96 363.0
26 TraesCS1B01G199400 chr6B 92.683 246 16 2 558 803 440292713 440292956 2.930000e-93 353.0
27 TraesCS1B01G199400 chr6B 90.000 270 27 0 1 270 529894808 529894539 3.800000e-92 350.0
28 TraesCS1B01G199400 chr6B 87.129 101 12 1 5360 5460 120135605 120135704 5.420000e-21 113.0
29 TraesCS1B01G199400 chr6A 99.118 1247 8 3 4094 5340 144253746 144254989 0.000000e+00 2239.0
30 TraesCS1B01G199400 chr6A 86.458 96 13 0 5360 5455 600113732 600113827 9.070000e-19 106.0
31 TraesCS1B01G199400 chr3B 98.957 1246 9 4 4095 5340 821308341 821307100 0.000000e+00 2226.0
32 TraesCS1B01G199400 chr3B 95.112 1248 51 5 4093 5340 711051826 711050589 0.000000e+00 1958.0
33 TraesCS1B01G199400 chr3B 92.963 270 19 0 1 270 526358867 526359136 1.730000e-105 394.0
34 TraesCS1B01G199400 chr3B 90.441 272 25 1 295 565 732832628 732832357 2.270000e-94 357.0
35 TraesCS1B01G199400 chr3B 90.909 264 23 1 295 557 526359105 526359368 2.930000e-93 353.0
36 TraesCS1B01G199400 chr3B 92.437 238 16 2 558 795 60411732 60411967 8.220000e-89 339.0
37 TraesCS1B01G199400 chr3B 92.632 95 7 0 5360 5454 4297592 4297498 3.220000e-28 137.0
38 TraesCS1B01G199400 chr3B 90.741 54 4 1 5354 5407 60410456 60410508 3.310000e-08 71.3
39 TraesCS1B01G199400 chr2B 95.429 1247 53 4 4094 5340 45565379 45566621 0.000000e+00 1984.0
40 TraesCS1B01G199400 chr2B 88.930 271 29 1 295 565 795472538 795472269 3.820000e-87 333.0
41 TraesCS1B01G199400 chr2B 89.583 96 10 0 5363 5458 73382585 73382490 9.010000e-24 122.0
42 TraesCS1B01G199400 chr2A 94.707 1247 63 3 4094 5340 733913470 733914713 0.000000e+00 1934.0
43 TraesCS1B01G199400 chr2A 92.963 270 19 0 1 270 72210226 72209957 1.730000e-105 394.0
44 TraesCS1B01G199400 chr4A 94.627 1247 64 3 4094 5340 602142449 602141206 0.000000e+00 1929.0
45 TraesCS1B01G199400 chr4A 93.697 238 13 2 558 795 670943974 670943739 8.160000e-94 355.0
46 TraesCS1B01G199400 chr4A 92.437 238 15 3 558 795 614725755 614725989 2.950000e-88 337.0
47 TraesCS1B01G199400 chr5A 92.963 270 19 0 1 270 367608257 367608526 1.730000e-105 394.0
48 TraesCS1B01G199400 chr5B 93.388 242 14 2 558 799 247773888 247773649 2.270000e-94 357.0
49 TraesCS1B01G199400 chr3A 90.000 270 27 0 1 270 748078818 748079087 3.800000e-92 350.0
50 TraesCS1B01G199400 chr3A 90.323 93 9 0 5360 5452 528557959 528557867 9.010000e-24 122.0
51 TraesCS1B01G199400 chr4B 92.857 238 15 2 558 795 68821802 68822037 1.770000e-90 344.0
52 TraesCS1B01G199400 chr5D 91.837 98 6 2 5360 5456 486737802 486737706 1.160000e-27 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G199400 chr1B 357426839 357433452 6613 True 12214.000000 12214 100.000000 1 6614 1 chr1B.!!$R2 6613
1 TraesCS1B01G199400 chr1A 327525714 327530195 4481 False 2343.333333 3125 95.834333 932 6610 3 chr1A.!!$F3 5678
2 TraesCS1B01G199400 chr1D 255488266 255492709 4443 False 2311.666667 2795 95.313333 802 6609 3 chr1D.!!$F1 5807
3 TraesCS1B01G199400 chr7B 466267845 466269091 1246 False 2246.000000 2246 99.121000 4090 5340 1 chr7B.!!$F2 1250
4 TraesCS1B01G199400 chr7A 81947232 81948474 1242 True 2244.000000 2244 99.198000 4094 5340 1 chr7A.!!$R1 1246
5 TraesCS1B01G199400 chr7A 148536576 148537081 505 False 346.000000 394 89.864000 1 565 2 chr7A.!!$F2 564
6 TraesCS1B01G199400 chr6B 523487995 523489238 1243 False 2244.000000 2244 99.198000 4094 5340 1 chr6B.!!$F3 1246
7 TraesCS1B01G199400 chr6B 132946411 132946912 501 False 429.500000 460 95.567000 1 565 2 chr6B.!!$F4 564
8 TraesCS1B01G199400 chr6B 529894300 529894808 508 True 356.500000 363 90.387500 1 565 2 chr6B.!!$R1 564
9 TraesCS1B01G199400 chr6A 144253746 144254989 1243 False 2239.000000 2239 99.118000 4094 5340 1 chr6A.!!$F1 1246
10 TraesCS1B01G199400 chr3B 821307100 821308341 1241 True 2226.000000 2226 98.957000 4095 5340 1 chr3B.!!$R4 1245
11 TraesCS1B01G199400 chr3B 711050589 711051826 1237 True 1958.000000 1958 95.112000 4093 5340 1 chr3B.!!$R2 1247
12 TraesCS1B01G199400 chr3B 526358867 526359368 501 False 373.500000 394 91.936000 1 557 2 chr3B.!!$F2 556
13 TraesCS1B01G199400 chr3B 60410456 60411967 1511 False 205.150000 339 91.589000 558 5407 2 chr3B.!!$F1 4849
14 TraesCS1B01G199400 chr2B 45565379 45566621 1242 False 1984.000000 1984 95.429000 4094 5340 1 chr2B.!!$F1 1246
15 TraesCS1B01G199400 chr2A 733913470 733914713 1243 False 1934.000000 1934 94.707000 4094 5340 1 chr2A.!!$F1 1246
16 TraesCS1B01G199400 chr4A 602141206 602142449 1243 True 1929.000000 1929 94.627000 4094 5340 1 chr4A.!!$R1 1246

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
551 552 0.952010 CGGACGACGGAAACCCAATT 60.952 55.000 0.00 0.0 39.42 2.32 F
1069 1790 0.389948 AAATCGTCAGACGGGACAGC 60.390 55.000 22.66 0.0 42.81 4.40 F
1579 2327 0.251519 AGGGGAAGTTCTACGACGGT 60.252 55.000 2.25 0.0 0.00 4.83 F
1767 2515 1.128188 AGGTCTGGCCGTTCCTTCTT 61.128 55.000 0.00 0.0 43.70 2.52 F
3408 4357 1.670087 CGCCACAACTTCAGACTCGAT 60.670 52.381 0.00 0.0 0.00 3.59 F
5326 6279 0.388520 CGATGAGCGGTGTGACTGAA 60.389 55.000 0.00 0.0 36.03 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1425 2171 0.954452 GAAGCACAGGACCACCTTTG 59.046 55.000 0.00 0.00 45.36 2.77 R
3025 3974 0.321653 GACTTCACAGGACGGGCAAT 60.322 55.000 0.00 0.00 0.00 3.56 R
3408 4357 0.392461 GCCTGCGAATACCCACTTCA 60.392 55.000 0.00 0.00 0.00 3.02 R
3879 4828 2.092753 ACTGCCAGGACCAATCATACAG 60.093 50.000 0.00 0.00 31.59 2.74 R
5349 6302 0.110823 CGAAAACCGAAGACAAGGCG 60.111 55.000 0.00 0.00 41.76 5.52 R
6325 7287 4.869861 AGTTCAAAAGTCTTGCGCAATTTT 59.130 33.333 25.26 22.85 0.00 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
245 246 3.299190 GCGCCTCCTAGATCGCCT 61.299 66.667 0.00 0.00 41.53 5.52
268 269 4.501285 TCGCCTCCTCGACCGGAT 62.501 66.667 9.46 0.00 33.02 4.18
269 270 3.967335 CGCCTCCTCGACCGGATC 61.967 72.222 9.46 0.32 31.43 3.36
296 297 4.501285 TCGCCTCCTCGACCGGAT 62.501 66.667 9.46 0.00 33.02 4.18
297 298 3.967335 CGCCTCCTCGACCGGATC 61.967 72.222 9.46 0.32 31.43 3.36
445 446 3.634910 GCAGGGTCCTTTTTGTAAGAACA 59.365 43.478 0.00 0.00 0.00 3.18
480 481 4.766404 ATCCACTTAAAAAGGAACTGCG 57.234 40.909 0.00 0.00 40.86 5.18
481 482 2.882137 TCCACTTAAAAAGGAACTGCGG 59.118 45.455 0.00 0.00 40.86 5.69
482 483 2.030274 CCACTTAAAAAGGAACTGCGGG 60.030 50.000 0.00 0.00 40.86 6.13
484 485 3.067601 CACTTAAAAAGGAACTGCGGGTT 59.932 43.478 0.00 0.00 40.86 4.11
485 486 3.067601 ACTTAAAAAGGAACTGCGGGTTG 59.932 43.478 0.00 0.00 40.86 3.77
486 487 1.770294 AAAAAGGAACTGCGGGTTGA 58.230 45.000 0.00 0.00 40.86 3.18
487 488 1.770294 AAAAGGAACTGCGGGTTGAA 58.230 45.000 0.00 0.00 40.86 2.69
489 490 2.871096 AAGGAACTGCGGGTTGAATA 57.129 45.000 0.00 0.00 40.86 1.75
490 491 2.109425 AGGAACTGCGGGTTGAATAC 57.891 50.000 0.00 0.00 38.41 1.89
491 492 1.092348 GGAACTGCGGGTTGAATACC 58.908 55.000 0.00 0.00 46.99 2.73
492 493 3.947384 AGGAACTGCGGGTTGAATACCA 61.947 50.000 0.00 0.00 44.07 3.25
493 494 5.751824 AGGAACTGCGGGTTGAATACCAG 62.752 52.174 0.00 0.00 44.07 4.00
504 505 6.451064 GGTTGAATACCAGAAACAATAGGG 57.549 41.667 0.00 0.00 46.92 3.53
505 506 6.184789 GGTTGAATACCAGAAACAATAGGGA 58.815 40.000 0.00 0.00 46.92 4.20
506 507 6.095021 GGTTGAATACCAGAAACAATAGGGAC 59.905 42.308 0.00 0.00 46.92 4.46
522 523 4.110036 AGGGACTATTTTGCAAAATCGC 57.890 40.909 34.40 28.11 39.24 4.58
524 525 4.947388 AGGGACTATTTTGCAAAATCGCTA 59.053 37.500 34.40 19.59 39.24 4.26
525 526 5.066505 AGGGACTATTTTGCAAAATCGCTAG 59.933 40.000 34.40 27.65 39.24 3.42
526 527 4.735338 GGACTATTTTGCAAAATCGCTAGC 59.265 41.667 34.40 21.65 39.24 3.42
527 528 4.342772 ACTATTTTGCAAAATCGCTAGCG 58.657 39.130 34.40 30.91 39.24 4.26
536 537 3.857854 TCGCTAGCGACGACGGAC 61.858 66.667 34.66 0.00 44.01 4.79
549 550 2.029369 CGGACGACGGAAACCCAA 59.971 61.111 0.00 0.00 39.42 4.12
550 551 1.375013 CGGACGACGGAAACCCAAT 60.375 57.895 0.00 0.00 39.42 3.16
551 552 0.952010 CGGACGACGGAAACCCAATT 60.952 55.000 0.00 0.00 39.42 2.32
553 554 1.610038 GGACGACGGAAACCCAATTTT 59.390 47.619 0.00 0.00 0.00 1.82
555 556 2.551032 GACGACGGAAACCCAATTTTCT 59.449 45.455 0.00 0.00 36.02 2.52
556 557 2.953648 ACGACGGAAACCCAATTTTCTT 59.046 40.909 0.00 0.00 36.02 2.52
557 558 3.382227 ACGACGGAAACCCAATTTTCTTT 59.618 39.130 0.00 0.00 36.02 2.52
558 559 4.579753 ACGACGGAAACCCAATTTTCTTTA 59.420 37.500 0.00 0.00 36.02 1.85
559 560 5.242171 ACGACGGAAACCCAATTTTCTTTAT 59.758 36.000 0.00 0.00 36.02 1.40
561 562 7.040548 ACGACGGAAACCCAATTTTCTTTATTA 60.041 33.333 0.00 0.00 36.02 0.98
562 563 7.971722 CGACGGAAACCCAATTTTCTTTATTAT 59.028 33.333 0.00 0.00 36.02 1.28
563 564 9.647797 GACGGAAACCCAATTTTCTTTATTATT 57.352 29.630 0.00 0.00 36.02 1.40
658 1376 1.466167 GTACTCGTACTCTGTTCGGCA 59.534 52.381 0.12 0.00 33.45 5.69
698 1416 4.337555 CCACCAGCTACGTACTTGTAGTAT 59.662 45.833 8.98 0.00 43.03 2.12
701 1419 5.649395 ACCAGCTACGTACTTGTAGTATCAA 59.351 40.000 8.98 0.00 43.03 2.57
741 1459 8.624776 ACGTAGGTGTACTAGTATATTTGGTTC 58.375 37.037 5.75 0.00 30.77 3.62
757 1475 3.300388 TGGTTCAAATTTAGGTGTGGCA 58.700 40.909 0.00 0.00 0.00 4.92
800 1518 2.980233 GCTCCGCCACTGTTTGCT 60.980 61.111 0.00 0.00 0.00 3.91
810 1528 1.001378 CACTGTTTGCTGTAAGGGTGC 60.001 52.381 0.00 0.00 0.00 5.01
831 1549 3.976942 GCATTGTGCTGTGAGTTAAACTG 59.023 43.478 0.00 0.00 40.96 3.16
841 1559 4.523173 TGTGAGTTAAACTGGATCGAGAGT 59.477 41.667 12.14 0.00 0.00 3.24
860 1578 4.593206 AGAGTCTAACACCCAACATCTTGA 59.407 41.667 0.00 0.00 0.00 3.02
885 1605 9.131791 GATGCTAGGAAATTTCATACCCTAAAA 57.868 33.333 19.49 4.19 0.00 1.52
1013 1734 4.740822 GCCCACGAACATGGCCCT 62.741 66.667 0.00 0.00 39.30 5.19
1021 1742 1.000843 CGAACATGGCCCTATCGATCA 59.999 52.381 0.00 0.00 35.65 2.92
1057 1778 2.056577 ACCACTTTCGTCGAAATCGTC 58.943 47.619 20.02 0.00 40.80 4.20
1068 1789 1.630148 GAAATCGTCAGACGGGACAG 58.370 55.000 22.66 0.00 42.81 3.51
1069 1790 0.389948 AAATCGTCAGACGGGACAGC 60.390 55.000 22.66 0.00 42.81 4.40
1168 1911 3.473647 CAGAGCTGGGGGATCGCA 61.474 66.667 12.32 0.00 35.20 5.10
1579 2327 0.251519 AGGGGAAGTTCTACGACGGT 60.252 55.000 2.25 0.00 0.00 4.83
1686 2434 5.073311 TGTGAGTTCCTGATGTAGCTTAC 57.927 43.478 0.00 0.00 0.00 2.34
1687 2435 4.526650 TGTGAGTTCCTGATGTAGCTTACA 59.473 41.667 0.00 0.00 43.80 2.41
1767 2515 1.128188 AGGTCTGGCCGTTCCTTCTT 61.128 55.000 0.00 0.00 43.70 2.52
1808 2556 3.198635 ACATTGTGATCCGAGGACAGATT 59.801 43.478 0.00 0.00 0.00 2.40
1831 2579 7.658179 TTTAGCTATGCTTGCAGATGTATAC 57.342 36.000 0.00 0.00 40.44 1.47
1857 2605 2.892374 TCCACGAGATACTTGCACATG 58.108 47.619 0.00 0.00 0.00 3.21
1896 2644 8.635877 AACATCGTTTTGTATTTTTAGCAACA 57.364 26.923 0.00 0.00 0.00 3.33
1902 2650 9.180678 CGTTTTGTATTTTTAGCAACAGATTCT 57.819 29.630 0.00 0.00 0.00 2.40
2283 3139 3.653539 TGTACTTAGTCACATGTGCGT 57.346 42.857 21.38 12.47 0.00 5.24
2644 3593 7.713764 AAAAACAATAAAGAAAGCAAGCGAT 57.286 28.000 0.00 0.00 0.00 4.58
2645 3594 6.934561 AAACAATAAAGAAAGCAAGCGATC 57.065 33.333 0.00 0.00 0.00 3.69
2646 3595 5.627499 ACAATAAAGAAAGCAAGCGATCA 57.373 34.783 0.00 0.00 0.00 2.92
2647 3596 5.634896 ACAATAAAGAAAGCAAGCGATCAG 58.365 37.500 0.00 0.00 0.00 2.90
2648 3597 5.182001 ACAATAAAGAAAGCAAGCGATCAGT 59.818 36.000 0.00 0.00 0.00 3.41
2649 3598 3.820777 AAAGAAAGCAAGCGATCAGTC 57.179 42.857 0.00 0.00 0.00 3.51
2650 3599 2.462456 AGAAAGCAAGCGATCAGTCA 57.538 45.000 0.00 0.00 0.00 3.41
2651 3600 2.771089 AGAAAGCAAGCGATCAGTCAA 58.229 42.857 0.00 0.00 0.00 3.18
2652 3601 3.341823 AGAAAGCAAGCGATCAGTCAAT 58.658 40.909 0.00 0.00 0.00 2.57
2653 3602 3.373439 AGAAAGCAAGCGATCAGTCAATC 59.627 43.478 0.00 0.00 0.00 2.67
2654 3603 2.391616 AGCAAGCGATCAGTCAATCA 57.608 45.000 0.00 0.00 0.00 2.57
2655 3604 2.005451 AGCAAGCGATCAGTCAATCAC 58.995 47.619 0.00 0.00 0.00 3.06
2656 3605 1.733912 GCAAGCGATCAGTCAATCACA 59.266 47.619 0.00 0.00 0.00 3.58
2657 3606 2.160219 GCAAGCGATCAGTCAATCACAA 59.840 45.455 0.00 0.00 0.00 3.33
2658 3607 3.365264 GCAAGCGATCAGTCAATCACAAA 60.365 43.478 0.00 0.00 0.00 2.83
2659 3608 4.400845 CAAGCGATCAGTCAATCACAAAG 58.599 43.478 0.00 0.00 0.00 2.77
2660 3609 3.930336 AGCGATCAGTCAATCACAAAGA 58.070 40.909 0.00 0.00 0.00 2.52
2661 3610 3.931468 AGCGATCAGTCAATCACAAAGAG 59.069 43.478 0.00 0.00 0.00 2.85
2662 3611 3.928992 GCGATCAGTCAATCACAAAGAGA 59.071 43.478 0.00 0.00 0.00 3.10
2663 3612 4.032672 GCGATCAGTCAATCACAAAGAGAG 59.967 45.833 0.00 0.00 0.00 3.20
2664 3613 4.032672 CGATCAGTCAATCACAAAGAGAGC 59.967 45.833 0.00 0.00 0.00 4.09
2665 3614 4.341366 TCAGTCAATCACAAAGAGAGCA 57.659 40.909 0.00 0.00 0.00 4.26
2666 3615 4.903054 TCAGTCAATCACAAAGAGAGCAT 58.097 39.130 0.00 0.00 0.00 3.79
2667 3616 5.311265 TCAGTCAATCACAAAGAGAGCATT 58.689 37.500 0.00 0.00 0.00 3.56
2668 3617 6.466812 TCAGTCAATCACAAAGAGAGCATTA 58.533 36.000 0.00 0.00 0.00 1.90
2669 3618 6.592994 TCAGTCAATCACAAAGAGAGCATTAG 59.407 38.462 0.00 0.00 0.00 1.73
2670 3619 6.370994 CAGTCAATCACAAAGAGAGCATTAGT 59.629 38.462 0.00 0.00 0.00 2.24
2671 3620 6.939163 AGTCAATCACAAAGAGAGCATTAGTT 59.061 34.615 0.00 0.00 0.00 2.24
2672 3621 7.118971 AGTCAATCACAAAGAGAGCATTAGTTC 59.881 37.037 0.00 0.00 0.00 3.01
2673 3622 6.936335 TCAATCACAAAGAGAGCATTAGTTCA 59.064 34.615 0.00 0.00 0.00 3.18
2674 3623 6.981762 ATCACAAAGAGAGCATTAGTTCAG 57.018 37.500 0.00 0.00 0.00 3.02
2675 3624 5.240891 TCACAAAGAGAGCATTAGTTCAGG 58.759 41.667 0.00 0.00 0.00 3.86
2676 3625 4.006319 ACAAAGAGAGCATTAGTTCAGGC 58.994 43.478 0.00 0.00 0.00 4.85
2677 3626 3.988976 AAGAGAGCATTAGTTCAGGCA 57.011 42.857 0.00 0.00 0.00 4.75
2678 3627 3.988976 AGAGAGCATTAGTTCAGGCAA 57.011 42.857 0.00 0.00 0.00 4.52
2679 3628 4.292186 AGAGAGCATTAGTTCAGGCAAA 57.708 40.909 0.00 0.00 0.00 3.68
2680 3629 4.260170 AGAGAGCATTAGTTCAGGCAAAG 58.740 43.478 0.00 0.00 0.00 2.77
2681 3630 4.006319 GAGAGCATTAGTTCAGGCAAAGT 58.994 43.478 0.00 0.00 0.00 2.66
2682 3631 4.006319 AGAGCATTAGTTCAGGCAAAGTC 58.994 43.478 0.00 0.00 0.00 3.01
2683 3632 3.753272 GAGCATTAGTTCAGGCAAAGTCA 59.247 43.478 0.00 0.00 0.00 3.41
2684 3633 4.144297 AGCATTAGTTCAGGCAAAGTCAA 58.856 39.130 0.00 0.00 0.00 3.18
2685 3634 4.584325 AGCATTAGTTCAGGCAAAGTCAAA 59.416 37.500 0.00 0.00 0.00 2.69
2686 3635 4.919754 GCATTAGTTCAGGCAAAGTCAAAG 59.080 41.667 0.00 0.00 0.00 2.77
2687 3636 5.278463 GCATTAGTTCAGGCAAAGTCAAAGA 60.278 40.000 0.00 0.00 0.00 2.52
2688 3637 6.735694 GCATTAGTTCAGGCAAAGTCAAAGAA 60.736 38.462 0.00 0.00 0.00 2.52
2689 3638 6.959639 TTAGTTCAGGCAAAGTCAAAGAAT 57.040 33.333 0.00 0.00 0.00 2.40
2690 3639 5.444663 AGTTCAGGCAAAGTCAAAGAATC 57.555 39.130 0.00 0.00 0.00 2.52
2691 3640 5.136105 AGTTCAGGCAAAGTCAAAGAATCT 58.864 37.500 0.00 0.00 0.00 2.40
2692 3641 5.009410 AGTTCAGGCAAAGTCAAAGAATCTG 59.991 40.000 0.00 0.00 0.00 2.90
2693 3642 4.464008 TCAGGCAAAGTCAAAGAATCTGT 58.536 39.130 0.00 0.00 0.00 3.41
2694 3643 4.889409 TCAGGCAAAGTCAAAGAATCTGTT 59.111 37.500 0.00 0.00 0.00 3.16
2695 3644 6.061441 TCAGGCAAAGTCAAAGAATCTGTTA 58.939 36.000 0.00 0.00 0.00 2.41
2696 3645 6.017109 TCAGGCAAAGTCAAAGAATCTGTTAC 60.017 38.462 0.00 0.00 0.00 2.50
2697 3646 6.016777 CAGGCAAAGTCAAAGAATCTGTTACT 60.017 38.462 0.00 0.00 0.00 2.24
2698 3647 6.547510 AGGCAAAGTCAAAGAATCTGTTACTT 59.452 34.615 0.00 0.00 0.00 2.24
2699 3648 6.858478 GGCAAAGTCAAAGAATCTGTTACTTC 59.142 38.462 0.89 0.00 0.00 3.01
2700 3649 7.255277 GGCAAAGTCAAAGAATCTGTTACTTCT 60.255 37.037 0.89 0.00 33.19 2.85
2701 3650 7.589221 GCAAAGTCAAAGAATCTGTTACTTCTG 59.411 37.037 0.89 3.92 32.20 3.02
2702 3651 8.616076 CAAAGTCAAAGAATCTGTTACTTCTGT 58.384 33.333 0.89 0.00 32.20 3.41
2703 3652 8.738645 AAGTCAAAGAATCTGTTACTTCTGTT 57.261 30.769 0.00 0.00 32.20 3.16
2704 3653 8.147642 AGTCAAAGAATCTGTTACTTCTGTTG 57.852 34.615 0.00 0.00 32.20 3.33
2705 3654 7.227512 AGTCAAAGAATCTGTTACTTCTGTTGG 59.772 37.037 0.00 0.00 32.20 3.77
2706 3655 7.226720 GTCAAAGAATCTGTTACTTCTGTTGGA 59.773 37.037 0.00 0.00 32.20 3.53
2707 3656 7.939039 TCAAAGAATCTGTTACTTCTGTTGGAT 59.061 33.333 0.00 0.00 32.20 3.41
2708 3657 7.913674 AAGAATCTGTTACTTCTGTTGGATC 57.086 36.000 0.00 0.00 32.20 3.36
2709 3658 7.251321 AGAATCTGTTACTTCTGTTGGATCT 57.749 36.000 0.00 0.00 30.68 2.75
2710 3659 7.102346 AGAATCTGTTACTTCTGTTGGATCTG 58.898 38.462 0.00 0.00 30.68 2.90
2711 3660 5.152623 TCTGTTACTTCTGTTGGATCTGG 57.847 43.478 0.00 0.00 0.00 3.86
2712 3661 4.838423 TCTGTTACTTCTGTTGGATCTGGA 59.162 41.667 0.00 0.00 0.00 3.86
2713 3662 5.047021 TCTGTTACTTCTGTTGGATCTGGAG 60.047 44.000 0.00 0.00 0.00 3.86
2714 3663 4.838423 TGTTACTTCTGTTGGATCTGGAGA 59.162 41.667 0.00 0.00 0.00 3.71
2715 3664 5.306937 TGTTACTTCTGTTGGATCTGGAGAA 59.693 40.000 0.00 0.00 0.00 2.87
2716 3665 4.278975 ACTTCTGTTGGATCTGGAGAAC 57.721 45.455 0.00 0.00 0.00 3.01
2717 3666 3.008485 ACTTCTGTTGGATCTGGAGAACC 59.992 47.826 0.00 0.00 37.49 3.62
2718 3667 2.907892 TCTGTTGGATCTGGAGAACCT 58.092 47.619 4.74 0.00 37.81 3.50
2719 3668 2.568956 TCTGTTGGATCTGGAGAACCTG 59.431 50.000 4.74 0.00 37.81 4.00
2720 3669 2.568956 CTGTTGGATCTGGAGAACCTGA 59.431 50.000 4.74 0.00 45.54 3.86
2721 3670 2.978978 TGTTGGATCTGGAGAACCTGAA 59.021 45.455 4.74 0.00 44.85 3.02
2722 3671 3.394274 TGTTGGATCTGGAGAACCTGAAA 59.606 43.478 4.74 0.00 44.85 2.69
2723 3672 4.141274 TGTTGGATCTGGAGAACCTGAAAA 60.141 41.667 4.74 0.00 44.85 2.29
2724 3673 4.722526 TGGATCTGGAGAACCTGAAAAA 57.277 40.909 4.74 0.00 44.85 1.94
2725 3674 4.655963 TGGATCTGGAGAACCTGAAAAAG 58.344 43.478 4.74 0.00 44.85 2.27
2726 3675 4.104738 TGGATCTGGAGAACCTGAAAAAGT 59.895 41.667 4.74 0.00 44.85 2.66
2727 3676 5.309543 TGGATCTGGAGAACCTGAAAAAGTA 59.690 40.000 4.74 0.00 44.85 2.24
2728 3677 6.183361 TGGATCTGGAGAACCTGAAAAAGTAA 60.183 38.462 4.74 0.00 44.85 2.24
2729 3678 6.372937 GGATCTGGAGAACCTGAAAAAGTAAG 59.627 42.308 0.00 0.00 44.85 2.34
2730 3679 5.063880 TCTGGAGAACCTGAAAAAGTAAGC 58.936 41.667 0.00 0.00 40.32 3.09
3156 4105 1.671054 GCAAGCTGCGGTTACCAGA 60.671 57.895 1.13 0.00 31.71 3.86
3408 4357 1.670087 CGCCACAACTTCAGACTCGAT 60.670 52.381 0.00 0.00 0.00 3.59
4008 4961 3.252400 CTCTCTCTGCATGTGACTGTTC 58.748 50.000 0.00 0.00 0.00 3.18
4009 4962 2.896044 TCTCTCTGCATGTGACTGTTCT 59.104 45.455 0.00 0.00 0.00 3.01
4010 4963 3.323115 TCTCTCTGCATGTGACTGTTCTT 59.677 43.478 0.00 0.00 0.00 2.52
4011 4964 4.063689 CTCTCTGCATGTGACTGTTCTTT 58.936 43.478 0.00 0.00 0.00 2.52
4319 5272 2.769663 TGTCGGAACACCCTAGCATTAT 59.230 45.455 0.00 0.00 0.00 1.28
4992 5945 1.618074 GCCAAGGAGCCAAGGAGAATT 60.618 52.381 1.95 0.00 0.00 2.17
5326 6279 0.388520 CGATGAGCGGTGTGACTGAA 60.389 55.000 0.00 0.00 36.03 3.02
5329 6282 2.254546 TGAGCGGTGTGACTGAAAAT 57.745 45.000 0.00 0.00 0.00 1.82
5330 6283 2.143122 TGAGCGGTGTGACTGAAAATC 58.857 47.619 0.00 0.00 0.00 2.17
5332 6285 1.202758 AGCGGTGTGACTGAAAATCCA 60.203 47.619 0.00 0.00 0.00 3.41
5333 6286 1.069227 GCGGTGTGACTGAAAATCCAC 60.069 52.381 0.00 0.00 0.00 4.02
5335 6288 1.886542 GGTGTGACTGAAAATCCACCC 59.113 52.381 0.00 0.00 37.07 4.61
5336 6289 1.535462 GTGTGACTGAAAATCCACCCG 59.465 52.381 0.00 0.00 0.00 5.28
5337 6290 0.521735 GTGACTGAAAATCCACCCGC 59.478 55.000 0.00 0.00 0.00 6.13
5338 6291 0.400213 TGACTGAAAATCCACCCGCT 59.600 50.000 0.00 0.00 0.00 5.52
5339 6292 1.202879 TGACTGAAAATCCACCCGCTT 60.203 47.619 0.00 0.00 0.00 4.68
5340 6293 1.886542 GACTGAAAATCCACCCGCTTT 59.113 47.619 0.00 0.00 0.00 3.51
5341 6294 2.296190 GACTGAAAATCCACCCGCTTTT 59.704 45.455 0.00 0.00 0.00 2.27
5342 6295 2.698274 ACTGAAAATCCACCCGCTTTTT 59.302 40.909 0.00 0.00 0.00 1.94
5356 6309 2.519780 TTTTTCCGGCCGCCTTGT 60.520 55.556 22.85 0.00 0.00 3.16
5357 6310 2.557372 TTTTTCCGGCCGCCTTGTC 61.557 57.895 22.85 0.00 0.00 3.18
5358 6311 2.969300 TTTTTCCGGCCGCCTTGTCT 62.969 55.000 22.85 0.00 0.00 3.41
5359 6312 2.969300 TTTTCCGGCCGCCTTGTCTT 62.969 55.000 22.85 0.00 0.00 3.01
5360 6313 3.894547 TTCCGGCCGCCTTGTCTTC 62.895 63.158 22.85 0.00 0.00 2.87
5363 6316 4.699522 GGCCGCCTTGTCTTCGGT 62.700 66.667 0.71 0.00 44.58 4.69
5364 6317 2.668550 GCCGCCTTGTCTTCGGTT 60.669 61.111 1.83 0.00 44.58 4.44
5365 6318 2.258726 GCCGCCTTGTCTTCGGTTT 61.259 57.895 1.83 0.00 44.58 3.27
5366 6319 1.792118 GCCGCCTTGTCTTCGGTTTT 61.792 55.000 1.83 0.00 44.58 2.43
5367 6320 0.237498 CCGCCTTGTCTTCGGTTTTC 59.763 55.000 0.00 0.00 38.47 2.29
5368 6321 0.110823 CGCCTTGTCTTCGGTTTTCG 60.111 55.000 0.00 0.00 40.90 3.46
5369 6322 0.385598 GCCTTGTCTTCGGTTTTCGC 60.386 55.000 0.00 0.00 39.05 4.70
5370 6323 0.237498 CCTTGTCTTCGGTTTTCGCC 59.763 55.000 0.00 0.00 39.05 5.54
5371 6324 0.237498 CTTGTCTTCGGTTTTCGCCC 59.763 55.000 0.00 0.00 39.05 6.13
5372 6325 1.500512 TTGTCTTCGGTTTTCGCCCG 61.501 55.000 0.00 0.00 46.83 6.13
5379 6332 3.411808 GGTTTTCGCCCGATTTTCC 57.588 52.632 0.00 0.00 0.00 3.13
5380 6333 0.455464 GGTTTTCGCCCGATTTTCCG 60.455 55.000 0.00 0.00 0.00 4.30
5381 6334 0.239082 GTTTTCGCCCGATTTTCCGT 59.761 50.000 0.00 0.00 0.00 4.69
5382 6335 0.953003 TTTTCGCCCGATTTTCCGTT 59.047 45.000 0.00 0.00 0.00 4.44
5383 6336 1.805869 TTTCGCCCGATTTTCCGTTA 58.194 45.000 0.00 0.00 0.00 3.18
5384 6337 1.805869 TTCGCCCGATTTTCCGTTAA 58.194 45.000 0.00 0.00 0.00 2.01
5385 6338 2.027003 TCGCCCGATTTTCCGTTAAT 57.973 45.000 0.00 0.00 0.00 1.40
5386 6339 2.358015 TCGCCCGATTTTCCGTTAATT 58.642 42.857 0.00 0.00 0.00 1.40
5387 6340 3.529533 TCGCCCGATTTTCCGTTAATTA 58.470 40.909 0.00 0.00 0.00 1.40
5388 6341 3.937706 TCGCCCGATTTTCCGTTAATTAA 59.062 39.130 0.00 0.00 0.00 1.40
5389 6342 4.030366 CGCCCGATTTTCCGTTAATTAAC 58.970 43.478 16.87 16.87 0.00 2.01
5390 6343 4.201841 CGCCCGATTTTCCGTTAATTAACT 60.202 41.667 22.57 6.08 34.12 2.24
5391 6344 5.032220 GCCCGATTTTCCGTTAATTAACTG 58.968 41.667 22.57 17.46 34.12 3.16
5392 6345 5.575019 CCCGATTTTCCGTTAATTAACTGG 58.425 41.667 22.57 22.56 34.12 4.00
5393 6346 5.354792 CCCGATTTTCCGTTAATTAACTGGA 59.645 40.000 25.08 25.08 37.22 3.86
5394 6347 6.253013 CCGATTTTCCGTTAATTAACTGGAC 58.747 40.000 27.03 19.34 38.02 4.02
5395 6348 6.128227 CCGATTTTCCGTTAATTAACTGGACA 60.128 38.462 27.03 21.99 38.02 4.02
5396 6349 7.299586 CGATTTTCCGTTAATTAACTGGACAA 58.700 34.615 27.03 26.18 38.02 3.18
5397 6350 7.269724 CGATTTTCCGTTAATTAACTGGACAAC 59.730 37.037 27.03 21.13 38.02 3.32
5398 6351 7.571080 TTTTCCGTTAATTAACTGGACAACT 57.429 32.000 27.03 0.00 38.02 3.16
5399 6352 6.790285 TTCCGTTAATTAACTGGACAACTC 57.210 37.500 27.03 4.12 38.02 3.01
5400 6353 6.105397 TCCGTTAATTAACTGGACAACTCT 57.895 37.500 25.08 0.00 35.53 3.24
5401 6354 6.161381 TCCGTTAATTAACTGGACAACTCTC 58.839 40.000 25.08 2.22 35.53 3.20
5402 6355 6.014840 TCCGTTAATTAACTGGACAACTCTCT 60.015 38.462 25.08 0.00 35.53 3.10
5403 6356 6.649557 CCGTTAATTAACTGGACAACTCTCTT 59.350 38.462 23.47 0.00 34.24 2.85
5404 6357 7.148623 CCGTTAATTAACTGGACAACTCTCTTC 60.149 40.741 23.47 0.00 34.24 2.87
5405 6358 7.599245 CGTTAATTAACTGGACAACTCTCTTCT 59.401 37.037 22.57 0.00 34.12 2.85
5406 6359 9.274206 GTTAATTAACTGGACAACTCTCTTCTT 57.726 33.333 19.07 0.00 33.52 2.52
5407 6360 9.847224 TTAATTAACTGGACAACTCTCTTCTTT 57.153 29.630 0.00 0.00 0.00 2.52
5408 6361 8.753497 AATTAACTGGACAACTCTCTTCTTTT 57.247 30.769 0.00 0.00 0.00 2.27
5409 6362 8.753497 ATTAACTGGACAACTCTCTTCTTTTT 57.247 30.769 0.00 0.00 0.00 1.94
5410 6363 9.847224 ATTAACTGGACAACTCTCTTCTTTTTA 57.153 29.630 0.00 0.00 0.00 1.52
5411 6364 9.675464 TTAACTGGACAACTCTCTTCTTTTTAA 57.325 29.630 0.00 0.00 0.00 1.52
5412 6365 8.753497 AACTGGACAACTCTCTTCTTTTTAAT 57.247 30.769 0.00 0.00 0.00 1.40
5413 6366 8.753497 ACTGGACAACTCTCTTCTTTTTAATT 57.247 30.769 0.00 0.00 0.00 1.40
5414 6367 9.847224 ACTGGACAACTCTCTTCTTTTTAATTA 57.153 29.630 0.00 0.00 0.00 1.40
5437 6390 8.761575 TTAATTGATGAGACAAATCTTTTGCC 57.238 30.769 0.06 0.00 34.34 4.52
5438 6391 6.600882 ATTGATGAGACAAATCTTTTGCCT 57.399 33.333 0.06 0.00 34.34 4.75
5439 6392 6.409524 TTGATGAGACAAATCTTTTGCCTT 57.590 33.333 0.06 0.00 34.34 4.35
5440 6393 6.017400 TGATGAGACAAATCTTTTGCCTTC 57.983 37.500 0.06 0.00 34.34 3.46
5441 6394 4.488126 TGAGACAAATCTTTTGCCTTCG 57.512 40.909 0.06 0.00 34.34 3.79
5442 6395 3.882888 TGAGACAAATCTTTTGCCTTCGT 59.117 39.130 0.06 0.00 34.34 3.85
5443 6396 4.338118 TGAGACAAATCTTTTGCCTTCGTT 59.662 37.500 0.06 0.00 34.34 3.85
5444 6397 5.163561 TGAGACAAATCTTTTGCCTTCGTTT 60.164 36.000 0.06 0.00 34.34 3.60
5445 6398 5.281727 AGACAAATCTTTTGCCTTCGTTTC 58.718 37.500 0.06 0.00 0.00 2.78
5446 6399 5.004922 ACAAATCTTTTGCCTTCGTTTCA 57.995 34.783 0.06 0.00 0.00 2.69
5447 6400 5.415221 ACAAATCTTTTGCCTTCGTTTCAA 58.585 33.333 0.06 0.00 0.00 2.69
5448 6401 5.872070 ACAAATCTTTTGCCTTCGTTTCAAA 59.128 32.000 0.06 0.00 0.00 2.69
5449 6402 6.370166 ACAAATCTTTTGCCTTCGTTTCAAAA 59.630 30.769 0.06 0.00 37.36 2.44
5450 6403 6.976636 AATCTTTTGCCTTCGTTTCAAAAA 57.023 29.167 0.00 0.00 38.65 1.94
5497 6454 5.030874 ACGTTTAGTTCAGTTATTGCAGC 57.969 39.130 0.00 0.00 0.00 5.25
5498 6455 4.083484 ACGTTTAGTTCAGTTATTGCAGCC 60.083 41.667 0.00 0.00 0.00 4.85
5594 6551 1.634757 CGCCGTCACTTGCATGCTTA 61.635 55.000 20.33 6.07 0.00 3.09
5607 6564 3.444742 TGCATGCTTAATAAGTGCTGCTT 59.555 39.130 20.33 0.30 41.05 3.91
5642 6599 5.334105 GGCGTGTATAACTGCAAGAATATGG 60.334 44.000 0.00 0.00 37.43 2.74
5671 6629 3.945285 ACAGTGAAACCGACAGACAAATT 59.055 39.130 0.00 0.00 37.80 1.82
5672 6630 5.120399 ACAGTGAAACCGACAGACAAATTA 58.880 37.500 0.00 0.00 37.80 1.40
5673 6631 5.007332 ACAGTGAAACCGACAGACAAATTAC 59.993 40.000 0.00 0.00 37.80 1.89
5780 6739 4.115516 CCTCAATTGTAGACACTCCATCG 58.884 47.826 5.13 0.00 0.00 3.84
6056 7018 0.727398 GATTTGCTGTAGTGCCGGAC 59.273 55.000 5.05 0.00 0.00 4.79
6352 7314 2.973879 GCGCAAGACTTTTGAACTTAGC 59.026 45.455 0.30 0.00 43.02 3.09
6516 7499 4.518970 AGCACATGTAACAGGAATTTCGTT 59.481 37.500 0.00 0.76 0.00 3.85
6610 7593 1.964223 ACTCTAGACCGTATGGCCATG 59.036 52.381 29.04 14.30 39.70 3.66
6611 7594 1.273606 CTCTAGACCGTATGGCCATGG 59.726 57.143 29.04 23.23 39.70 3.66
6612 7595 0.320771 CTAGACCGTATGGCCATGGC 60.321 60.000 29.47 29.47 39.70 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
280 281 3.967335 GATCCGGTCGAGGAGGCG 61.967 72.222 0.00 0.00 44.55 5.52
307 308 4.501285 ATCCGGTCGAGGAGGCGA 62.501 66.667 0.00 0.00 44.55 5.54
308 309 3.967335 GATCCGGTCGAGGAGGCG 61.967 72.222 0.00 0.00 44.55 5.52
309 310 2.519780 AGATCCGGTCGAGGAGGC 60.520 66.667 0.00 0.00 44.55 4.70
310 311 2.255172 CGAGATCCGGTCGAGGAGG 61.255 68.421 7.13 0.00 44.55 4.30
311 312 2.899044 GCGAGATCCGGTCGAGGAG 61.899 68.421 16.33 0.00 44.55 3.69
312 313 2.900838 GCGAGATCCGGTCGAGGA 60.901 66.667 16.33 0.00 45.54 3.71
313 314 3.967335 GGCGAGATCCGGTCGAGG 61.967 72.222 16.33 0.00 39.92 4.63
314 315 4.315122 CGGCGAGATCCGGTCGAG 62.315 72.222 16.33 5.92 45.38 4.04
460 461 2.882137 CCGCAGTTCCTTTTTAAGTGGA 59.118 45.455 0.00 0.00 0.00 4.02
461 462 2.030274 CCCGCAGTTCCTTTTTAAGTGG 60.030 50.000 0.00 0.00 0.00 4.00
462 463 2.621526 ACCCGCAGTTCCTTTTTAAGTG 59.378 45.455 0.00 0.00 0.00 3.16
463 464 2.940158 ACCCGCAGTTCCTTTTTAAGT 58.060 42.857 0.00 0.00 0.00 2.24
464 465 3.316868 TCAACCCGCAGTTCCTTTTTAAG 59.683 43.478 0.00 0.00 36.18 1.85
466 467 2.933573 TCAACCCGCAGTTCCTTTTTA 58.066 42.857 0.00 0.00 36.18 1.52
467 468 1.770294 TCAACCCGCAGTTCCTTTTT 58.230 45.000 0.00 0.00 36.18 1.94
468 469 1.770294 TTCAACCCGCAGTTCCTTTT 58.230 45.000 0.00 0.00 36.18 2.27
470 471 2.433436 GTATTCAACCCGCAGTTCCTT 58.567 47.619 0.00 0.00 36.18 3.36
471 472 1.339727 GGTATTCAACCCGCAGTTCCT 60.340 52.381 0.00 0.00 43.16 3.36
472 473 1.092348 GGTATTCAACCCGCAGTTCC 58.908 55.000 0.00 0.00 43.16 3.62
482 483 6.884836 AGTCCCTATTGTTTCTGGTATTCAAC 59.115 38.462 0.00 0.00 0.00 3.18
484 485 6.636454 AGTCCCTATTGTTTCTGGTATTCA 57.364 37.500 0.00 0.00 0.00 2.57
485 486 9.628500 AAATAGTCCCTATTGTTTCTGGTATTC 57.372 33.333 0.00 0.00 36.85 1.75
486 487 9.990868 AAAATAGTCCCTATTGTTTCTGGTATT 57.009 29.630 0.00 0.00 36.85 1.89
487 488 9.408648 CAAAATAGTCCCTATTGTTTCTGGTAT 57.591 33.333 0.00 0.00 36.85 2.73
489 490 6.152831 GCAAAATAGTCCCTATTGTTTCTGGT 59.847 38.462 0.00 0.00 36.85 4.00
490 491 6.152661 TGCAAAATAGTCCCTATTGTTTCTGG 59.847 38.462 0.00 0.00 36.85 3.86
491 492 7.156876 TGCAAAATAGTCCCTATTGTTTCTG 57.843 36.000 0.00 0.00 36.85 3.02
492 493 7.775053 TTGCAAAATAGTCCCTATTGTTTCT 57.225 32.000 0.00 0.00 36.85 2.52
493 494 8.825667 TTTTGCAAAATAGTCCCTATTGTTTC 57.174 30.769 20.46 0.00 36.85 2.78
495 496 7.759433 CGATTTTGCAAAATAGTCCCTATTGTT 59.241 33.333 31.79 10.50 38.64 2.83
496 497 7.257722 CGATTTTGCAAAATAGTCCCTATTGT 58.742 34.615 31.79 10.91 38.64 2.71
497 498 6.198966 GCGATTTTGCAAAATAGTCCCTATTG 59.801 38.462 32.06 17.90 38.64 1.90
498 499 6.096846 AGCGATTTTGCAAAATAGTCCCTATT 59.903 34.615 32.06 14.55 38.64 1.73
499 500 5.594317 AGCGATTTTGCAAAATAGTCCCTAT 59.406 36.000 32.06 15.16 38.64 2.57
501 502 3.763897 AGCGATTTTGCAAAATAGTCCCT 59.236 39.130 32.06 22.95 38.64 4.20
502 503 4.110036 AGCGATTTTGCAAAATAGTCCC 57.890 40.909 32.06 21.51 38.64 4.46
503 504 4.735338 GCTAGCGATTTTGCAAAATAGTCC 59.265 41.667 32.06 22.13 38.64 3.85
504 505 4.434588 CGCTAGCGATTTTGCAAAATAGTC 59.565 41.667 32.06 26.06 42.83 2.59
505 506 4.094294 TCGCTAGCGATTTTGCAAAATAGT 59.906 37.500 34.66 24.22 44.01 2.12
506 507 4.587306 TCGCTAGCGATTTTGCAAAATAG 58.413 39.130 34.66 30.67 44.01 1.73
508 509 3.485947 TCGCTAGCGATTTTGCAAAAT 57.514 38.095 34.66 32.11 44.01 1.82
509 510 2.979401 TCGCTAGCGATTTTGCAAAA 57.021 40.000 34.66 25.76 44.01 2.44
519 520 3.857854 GTCCGTCGTCGCTAGCGA 61.858 66.667 34.66 34.66 46.87 4.93
521 522 3.857854 TCGTCCGTCGTCGCTAGC 61.858 66.667 4.06 4.06 40.80 3.42
522 523 2.021106 GTCGTCCGTCGTCGCTAG 59.979 66.667 0.00 0.00 40.80 3.42
526 527 3.578089 TTTCCGTCGTCCGTCGTCG 62.578 63.158 5.71 9.02 46.59 5.12
527 528 2.077198 GTTTCCGTCGTCCGTCGTC 61.077 63.158 5.71 0.00 40.80 4.20
528 529 2.050985 GTTTCCGTCGTCCGTCGT 60.051 61.111 5.71 0.00 40.80 4.34
529 530 2.802414 GGTTTCCGTCGTCCGTCG 60.802 66.667 0.00 0.00 41.41 5.12
530 531 2.431430 GGGTTTCCGTCGTCCGTC 60.431 66.667 0.00 0.00 33.66 4.79
531 532 2.103339 ATTGGGTTTCCGTCGTCCGT 62.103 55.000 0.00 0.00 35.24 4.69
532 533 0.952010 AATTGGGTTTCCGTCGTCCG 60.952 55.000 0.00 0.00 35.24 4.79
533 534 1.241165 AAATTGGGTTTCCGTCGTCC 58.759 50.000 0.00 0.00 35.24 4.79
534 535 2.551032 AGAAAATTGGGTTTCCGTCGTC 59.449 45.455 0.00 0.00 38.10 4.20
535 536 2.578786 AGAAAATTGGGTTTCCGTCGT 58.421 42.857 0.00 0.00 38.10 4.34
536 537 3.636282 AAGAAAATTGGGTTTCCGTCG 57.364 42.857 0.00 0.00 38.10 5.12
537 538 9.647797 AATAATAAAGAAAATTGGGTTTCCGTC 57.352 29.630 0.00 0.00 38.10 4.79
632 1350 4.673441 GAACAGAGTACGAGTACATGCAT 58.327 43.478 14.83 0.00 38.48 3.96
636 1354 2.097142 GCCGAACAGAGTACGAGTACAT 59.903 50.000 14.83 1.47 38.48 2.29
658 1376 3.591527 TGGTGGGGATGATGTAAAACTCT 59.408 43.478 0.00 0.00 0.00 3.24
698 1416 1.140052 ACGTGTTGGACATGGACTTGA 59.860 47.619 0.00 0.00 39.36 3.02
701 1419 1.275291 CCTACGTGTTGGACATGGACT 59.725 52.381 0.00 0.00 39.36 3.85
732 1450 6.042093 TGCCACACCTAAATTTGAACCAAATA 59.958 34.615 0.00 0.00 42.32 1.40
733 1451 5.163258 TGCCACACCTAAATTTGAACCAAAT 60.163 36.000 0.00 0.00 44.62 2.32
741 1459 2.927871 GCAGCTGCCACACCTAAATTTG 60.928 50.000 28.76 0.00 34.31 2.32
795 1513 2.035704 CACAATGCACCCTTACAGCAAA 59.964 45.455 0.00 0.00 42.15 3.68
796 1514 1.612950 CACAATGCACCCTTACAGCAA 59.387 47.619 0.00 0.00 42.15 3.91
797 1515 1.246649 CACAATGCACCCTTACAGCA 58.753 50.000 0.00 0.00 43.14 4.41
798 1516 0.109132 GCACAATGCACCCTTACAGC 60.109 55.000 0.00 0.00 44.26 4.40
810 1528 4.275689 TCCAGTTTAACTCACAGCACAATG 59.724 41.667 0.00 0.00 0.00 2.82
831 1549 2.376109 TGGGTGTTAGACTCTCGATCC 58.624 52.381 0.00 0.00 0.00 3.36
841 1559 4.009675 GCATCAAGATGTTGGGTGTTAGA 58.990 43.478 11.35 0.00 40.80 2.10
860 1578 9.487442 TTTTTAGGGTATGAAATTTCCTAGCAT 57.513 29.630 24.56 21.79 33.45 3.79
921 1641 4.994852 ACCGATCGAATGAAGAAACTTTGA 59.005 37.500 18.66 0.00 0.00 2.69
929 1649 2.028876 TGCCTACCGATCGAATGAAGA 58.971 47.619 18.66 0.00 0.00 2.87
1007 1728 1.040646 GTCACTGATCGATAGGGCCA 58.959 55.000 6.18 0.00 0.00 5.36
1013 1734 0.591488 GCGTGCGTCACTGATCGATA 60.591 55.000 0.00 0.00 31.34 2.92
1068 1789 2.126307 TCTCTGCAGTTCTCGCGC 60.126 61.111 14.67 0.00 0.00 6.86
1069 1790 0.523125 CTCTCTCTGCAGTTCTCGCG 60.523 60.000 14.67 0.00 0.00 5.87
1396 2142 2.035783 GGAGGGTTTGGGTCTGGC 59.964 66.667 0.00 0.00 0.00 4.85
1425 2171 0.954452 GAAGCACAGGACCACCTTTG 59.046 55.000 0.00 0.00 45.36 2.77
1543 2291 1.080093 CTCCGGCGTGAACAAGCTA 60.080 57.895 6.01 0.00 36.09 3.32
1579 2327 0.966179 TCTTCAGTAGCTTGACGCCA 59.034 50.000 0.00 0.00 40.39 5.69
1686 2434 7.130917 GCAGACAGCTCAATATAATGACTTTG 58.869 38.462 0.00 0.00 41.15 2.77
1687 2435 7.256756 GCAGACAGCTCAATATAATGACTTT 57.743 36.000 0.00 0.00 41.15 2.66
1767 2515 6.946583 ACAATGTCTAGAGTACTTACACTCCA 59.053 38.462 0.00 0.00 45.08 3.86
1808 2556 6.997655 AGTATACATCTGCAAGCATAGCTAA 58.002 36.000 5.50 0.00 38.25 3.09
1831 2579 4.979197 GTGCAAGTATCTCGTGGATCTAAG 59.021 45.833 0.00 0.00 35.98 2.18
1857 2605 3.786635 ACGATGTTAGCATGAGTTCCTC 58.213 45.455 0.00 0.00 35.07 3.71
1920 2668 8.741841 TCAAATGCAGAAAAGATGAATCATGTA 58.258 29.630 0.00 0.00 0.00 2.29
1972 2720 4.981806 TCAAGTCCCAAAACTGAAACAG 57.018 40.909 0.00 0.00 37.52 3.16
2118 2867 8.941977 ACGCAATAGTTTTGATACTACAAATGA 58.058 29.630 0.00 0.00 39.09 2.57
2291 3147 3.171528 AGGTAAACACTCTGACTACCCC 58.828 50.000 0.00 0.00 32.41 4.95
2292 3148 3.119566 CGAGGTAAACACTCTGACTACCC 60.120 52.174 0.00 0.00 32.41 3.69
2448 3304 6.287589 AGAAAACTATAGTGAGACTGTGGG 57.712 41.667 6.06 0.00 0.00 4.61
2638 3587 4.318332 TCTTTGTGATTGACTGATCGCTT 58.682 39.130 0.00 0.00 37.42 4.68
2639 3588 3.930336 TCTTTGTGATTGACTGATCGCT 58.070 40.909 0.00 0.00 37.42 4.93
2640 3589 3.928992 TCTCTTTGTGATTGACTGATCGC 59.071 43.478 0.00 0.00 37.13 4.58
2641 3590 4.032672 GCTCTCTTTGTGATTGACTGATCG 59.967 45.833 0.00 0.00 0.00 3.69
2642 3591 4.934001 TGCTCTCTTTGTGATTGACTGATC 59.066 41.667 0.00 0.00 0.00 2.92
2643 3592 4.903054 TGCTCTCTTTGTGATTGACTGAT 58.097 39.130 0.00 0.00 0.00 2.90
2644 3593 4.341366 TGCTCTCTTTGTGATTGACTGA 57.659 40.909 0.00 0.00 0.00 3.41
2645 3594 5.624344 AATGCTCTCTTTGTGATTGACTG 57.376 39.130 0.00 0.00 0.00 3.51
2646 3595 6.471146 ACTAATGCTCTCTTTGTGATTGACT 58.529 36.000 0.00 0.00 0.00 3.41
2647 3596 6.734104 ACTAATGCTCTCTTTGTGATTGAC 57.266 37.500 0.00 0.00 0.00 3.18
2648 3597 6.936335 TGAACTAATGCTCTCTTTGTGATTGA 59.064 34.615 0.00 0.00 0.00 2.57
2649 3598 7.137490 TGAACTAATGCTCTCTTTGTGATTG 57.863 36.000 0.00 0.00 0.00 2.67
2650 3599 6.373774 CCTGAACTAATGCTCTCTTTGTGATT 59.626 38.462 0.00 0.00 0.00 2.57
2651 3600 5.879223 CCTGAACTAATGCTCTCTTTGTGAT 59.121 40.000 0.00 0.00 0.00 3.06
2652 3601 5.240891 CCTGAACTAATGCTCTCTTTGTGA 58.759 41.667 0.00 0.00 0.00 3.58
2653 3602 4.142730 GCCTGAACTAATGCTCTCTTTGTG 60.143 45.833 0.00 0.00 0.00 3.33
2654 3603 4.006319 GCCTGAACTAATGCTCTCTTTGT 58.994 43.478 0.00 0.00 0.00 2.83
2655 3604 4.005650 TGCCTGAACTAATGCTCTCTTTG 58.994 43.478 0.00 0.00 0.00 2.77
2656 3605 4.292186 TGCCTGAACTAATGCTCTCTTT 57.708 40.909 0.00 0.00 0.00 2.52
2657 3606 3.988976 TGCCTGAACTAATGCTCTCTT 57.011 42.857 0.00 0.00 0.00 2.85
2658 3607 3.988976 TTGCCTGAACTAATGCTCTCT 57.011 42.857 0.00 0.00 0.00 3.10
2659 3608 4.006319 ACTTTGCCTGAACTAATGCTCTC 58.994 43.478 0.00 0.00 0.00 3.20
2660 3609 4.006319 GACTTTGCCTGAACTAATGCTCT 58.994 43.478 0.00 0.00 0.00 4.09
2661 3610 3.753272 TGACTTTGCCTGAACTAATGCTC 59.247 43.478 0.00 0.00 0.00 4.26
2662 3611 3.754965 TGACTTTGCCTGAACTAATGCT 58.245 40.909 0.00 0.00 0.00 3.79
2663 3612 4.503741 TTGACTTTGCCTGAACTAATGC 57.496 40.909 0.00 0.00 0.00 3.56
2664 3613 6.317789 TCTTTGACTTTGCCTGAACTAATG 57.682 37.500 0.00 0.00 0.00 1.90
2665 3614 6.959639 TTCTTTGACTTTGCCTGAACTAAT 57.040 33.333 0.00 0.00 0.00 1.73
2666 3615 6.772716 AGATTCTTTGACTTTGCCTGAACTAA 59.227 34.615 0.00 0.00 0.00 2.24
2667 3616 6.205464 CAGATTCTTTGACTTTGCCTGAACTA 59.795 38.462 0.00 0.00 0.00 2.24
2668 3617 5.009410 CAGATTCTTTGACTTTGCCTGAACT 59.991 40.000 0.00 0.00 0.00 3.01
2669 3618 5.218139 CAGATTCTTTGACTTTGCCTGAAC 58.782 41.667 0.00 0.00 0.00 3.18
2670 3619 4.889409 ACAGATTCTTTGACTTTGCCTGAA 59.111 37.500 0.00 0.00 0.00 3.02
2671 3620 4.464008 ACAGATTCTTTGACTTTGCCTGA 58.536 39.130 0.00 0.00 0.00 3.86
2672 3621 4.843220 ACAGATTCTTTGACTTTGCCTG 57.157 40.909 0.00 0.00 0.00 4.85
2673 3622 6.064717 AGTAACAGATTCTTTGACTTTGCCT 58.935 36.000 0.00 0.00 0.00 4.75
2674 3623 6.319141 AGTAACAGATTCTTTGACTTTGCC 57.681 37.500 0.00 0.00 0.00 4.52
2675 3624 7.589221 CAGAAGTAACAGATTCTTTGACTTTGC 59.411 37.037 4.42 0.00 33.51 3.68
2676 3625 8.616076 ACAGAAGTAACAGATTCTTTGACTTTG 58.384 33.333 4.42 7.11 33.51 2.77
2677 3626 8.738645 ACAGAAGTAACAGATTCTTTGACTTT 57.261 30.769 4.42 0.00 33.51 2.66
2678 3627 8.616076 CAACAGAAGTAACAGATTCTTTGACTT 58.384 33.333 2.72 2.72 33.51 3.01
2679 3628 7.227512 CCAACAGAAGTAACAGATTCTTTGACT 59.772 37.037 0.00 0.00 33.51 3.41
2680 3629 7.226720 TCCAACAGAAGTAACAGATTCTTTGAC 59.773 37.037 0.00 0.00 33.51 3.18
2681 3630 7.279615 TCCAACAGAAGTAACAGATTCTTTGA 58.720 34.615 0.00 0.00 33.51 2.69
2682 3631 7.496529 TCCAACAGAAGTAACAGATTCTTTG 57.503 36.000 0.00 0.00 33.51 2.77
2683 3632 8.160106 AGATCCAACAGAAGTAACAGATTCTTT 58.840 33.333 0.00 0.00 33.51 2.52
2684 3633 7.605691 CAGATCCAACAGAAGTAACAGATTCTT 59.394 37.037 0.00 0.00 33.51 2.52
2685 3634 7.102346 CAGATCCAACAGAAGTAACAGATTCT 58.898 38.462 0.00 0.00 36.19 2.40
2686 3635 6.314896 CCAGATCCAACAGAAGTAACAGATTC 59.685 42.308 0.00 0.00 0.00 2.52
2687 3636 6.013379 TCCAGATCCAACAGAAGTAACAGATT 60.013 38.462 0.00 0.00 0.00 2.40
2688 3637 5.485353 TCCAGATCCAACAGAAGTAACAGAT 59.515 40.000 0.00 0.00 0.00 2.90
2689 3638 4.838423 TCCAGATCCAACAGAAGTAACAGA 59.162 41.667 0.00 0.00 0.00 3.41
2690 3639 5.047021 TCTCCAGATCCAACAGAAGTAACAG 60.047 44.000 0.00 0.00 0.00 3.16
2691 3640 4.838423 TCTCCAGATCCAACAGAAGTAACA 59.162 41.667 0.00 0.00 0.00 2.41
2692 3641 5.407407 TCTCCAGATCCAACAGAAGTAAC 57.593 43.478 0.00 0.00 0.00 2.50
2693 3642 5.280011 GGTTCTCCAGATCCAACAGAAGTAA 60.280 44.000 0.00 0.00 34.75 2.24
2694 3643 4.223032 GGTTCTCCAGATCCAACAGAAGTA 59.777 45.833 0.00 0.00 34.75 2.24
2695 3644 3.008485 GGTTCTCCAGATCCAACAGAAGT 59.992 47.826 0.00 0.00 34.75 3.01
2696 3645 3.262915 AGGTTCTCCAGATCCAACAGAAG 59.737 47.826 6.48 0.00 36.59 2.85
2697 3646 3.008375 CAGGTTCTCCAGATCCAACAGAA 59.992 47.826 6.48 0.00 36.59 3.02
2698 3647 2.568956 CAGGTTCTCCAGATCCAACAGA 59.431 50.000 6.48 0.00 36.59 3.41
2699 3648 2.568956 TCAGGTTCTCCAGATCCAACAG 59.431 50.000 6.48 0.00 36.59 3.16
2700 3649 2.619931 TCAGGTTCTCCAGATCCAACA 58.380 47.619 6.48 0.00 36.59 3.33
2701 3650 3.703001 TTCAGGTTCTCCAGATCCAAC 57.297 47.619 6.48 0.00 36.59 3.77
2702 3651 4.722526 TTTTCAGGTTCTCCAGATCCAA 57.277 40.909 6.48 0.00 36.59 3.53
2703 3652 4.104738 ACTTTTTCAGGTTCTCCAGATCCA 59.895 41.667 6.48 0.00 36.59 3.41
2704 3653 4.657013 ACTTTTTCAGGTTCTCCAGATCC 58.343 43.478 0.00 0.00 35.89 3.36
2705 3654 6.128145 GCTTACTTTTTCAGGTTCTCCAGATC 60.128 42.308 0.00 0.00 35.89 2.75
2706 3655 5.707764 GCTTACTTTTTCAGGTTCTCCAGAT 59.292 40.000 0.00 0.00 35.89 2.90
2707 3656 5.063880 GCTTACTTTTTCAGGTTCTCCAGA 58.936 41.667 0.00 0.00 35.89 3.86
2708 3657 4.083802 CGCTTACTTTTTCAGGTTCTCCAG 60.084 45.833 0.00 0.00 35.89 3.86
2709 3658 3.813166 CGCTTACTTTTTCAGGTTCTCCA 59.187 43.478 0.00 0.00 35.89 3.86
2710 3659 3.813724 ACGCTTACTTTTTCAGGTTCTCC 59.186 43.478 0.00 0.00 0.00 3.71
2711 3660 4.319549 CCACGCTTACTTTTTCAGGTTCTC 60.320 45.833 0.00 0.00 0.00 2.87
2712 3661 3.564225 CCACGCTTACTTTTTCAGGTTCT 59.436 43.478 0.00 0.00 0.00 3.01
2713 3662 3.562557 TCCACGCTTACTTTTTCAGGTTC 59.437 43.478 0.00 0.00 0.00 3.62
2714 3663 3.547746 TCCACGCTTACTTTTTCAGGTT 58.452 40.909 0.00 0.00 0.00 3.50
2715 3664 3.202829 TCCACGCTTACTTTTTCAGGT 57.797 42.857 0.00 0.00 0.00 4.00
2716 3665 3.751175 TCATCCACGCTTACTTTTTCAGG 59.249 43.478 0.00 0.00 0.00 3.86
2717 3666 5.122239 TGATCATCCACGCTTACTTTTTCAG 59.878 40.000 0.00 0.00 0.00 3.02
2718 3667 5.000591 TGATCATCCACGCTTACTTTTTCA 58.999 37.500 0.00 0.00 0.00 2.69
2719 3668 5.545658 TGATCATCCACGCTTACTTTTTC 57.454 39.130 0.00 0.00 0.00 2.29
2720 3669 7.498900 TGATATGATCATCCACGCTTACTTTTT 59.501 33.333 12.53 0.00 33.59 1.94
2721 3670 6.992123 TGATATGATCATCCACGCTTACTTTT 59.008 34.615 12.53 0.00 33.59 2.27
2722 3671 6.425114 GTGATATGATCATCCACGCTTACTTT 59.575 38.462 12.53 0.00 42.04 2.66
2723 3672 5.928839 GTGATATGATCATCCACGCTTACTT 59.071 40.000 12.53 0.00 42.04 2.24
2724 3673 5.473931 GTGATATGATCATCCACGCTTACT 58.526 41.667 12.53 0.00 42.04 2.24
2725 3674 4.324669 CGTGATATGATCATCCACGCTTAC 59.675 45.833 31.92 15.07 42.04 2.34
2726 3675 4.217550 TCGTGATATGATCATCCACGCTTA 59.782 41.667 34.72 24.79 42.39 3.09
2727 3676 3.005791 TCGTGATATGATCATCCACGCTT 59.994 43.478 34.72 11.15 42.39 4.68
2728 3677 2.558359 TCGTGATATGATCATCCACGCT 59.442 45.455 34.72 11.75 42.39 5.07
2729 3678 2.919859 CTCGTGATATGATCATCCACGC 59.080 50.000 34.72 23.14 42.39 5.34
2730 3679 3.916776 CACTCGTGATATGATCATCCACG 59.083 47.826 34.26 34.26 43.18 4.94
3025 3974 0.321653 GACTTCACAGGACGGGCAAT 60.322 55.000 0.00 0.00 0.00 3.56
3026 3975 1.070786 GACTTCACAGGACGGGCAA 59.929 57.895 0.00 0.00 0.00 4.52
3156 4105 3.965694 AGCAGATTCAATTGCCTTCTCT 58.034 40.909 0.00 0.00 41.17 3.10
3408 4357 0.392461 GCCTGCGAATACCCACTTCA 60.392 55.000 0.00 0.00 0.00 3.02
3879 4828 2.092753 ACTGCCAGGACCAATCATACAG 60.093 50.000 0.00 0.00 31.59 2.74
4319 5272 2.025981 CCTGGACCATCTGGAATGAACA 60.026 50.000 2.55 0.00 38.94 3.18
4992 5945 0.467290 AGCCAAAACGCCTTTCTGGA 60.467 50.000 10.96 0.00 38.35 3.86
5148 6101 6.014925 GGGGGTGCTTAACTCTGAAAAATTTA 60.015 38.462 0.00 0.00 0.00 1.40
5339 6292 2.519780 ACAAGGCGGCCGGAAAAA 60.520 55.556 29.38 0.00 0.00 1.94
5340 6293 2.969300 AAGACAAGGCGGCCGGAAAA 62.969 55.000 29.38 0.00 0.00 2.29
5341 6294 3.485346 AAGACAAGGCGGCCGGAAA 62.485 57.895 29.38 0.00 0.00 3.13
5342 6295 3.894547 GAAGACAAGGCGGCCGGAA 62.895 63.158 29.38 0.00 0.00 4.30
5343 6296 4.388499 GAAGACAAGGCGGCCGGA 62.388 66.667 29.38 0.00 0.00 5.14
5349 6302 0.110823 CGAAAACCGAAGACAAGGCG 60.111 55.000 0.00 0.00 41.76 5.52
5350 6303 0.385598 GCGAAAACCGAAGACAAGGC 60.386 55.000 0.00 0.00 41.76 4.35
5351 6304 0.237498 GGCGAAAACCGAAGACAAGG 59.763 55.000 0.00 0.00 41.76 3.61
5352 6305 0.237498 GGGCGAAAACCGAAGACAAG 59.763 55.000 0.00 0.00 41.76 3.16
5353 6306 2.323213 GGGCGAAAACCGAAGACAA 58.677 52.632 0.00 0.00 41.76 3.18
5354 6307 4.052519 GGGCGAAAACCGAAGACA 57.947 55.556 0.00 0.00 41.76 3.41
5361 6314 0.455464 CGGAAAATCGGGCGAAAACC 60.455 55.000 0.00 0.00 0.00 3.27
5362 6315 0.239082 ACGGAAAATCGGGCGAAAAC 59.761 50.000 0.00 0.00 0.00 2.43
5363 6316 0.953003 AACGGAAAATCGGGCGAAAA 59.047 45.000 0.00 0.00 0.00 2.29
5364 6317 1.805869 TAACGGAAAATCGGGCGAAA 58.194 45.000 0.00 0.00 0.00 3.46
5365 6318 1.805869 TTAACGGAAAATCGGGCGAA 58.194 45.000 0.00 0.00 0.00 4.70
5366 6319 2.027003 ATTAACGGAAAATCGGGCGA 57.973 45.000 0.00 0.00 0.00 5.54
5367 6320 2.836479 AATTAACGGAAAATCGGGCG 57.164 45.000 0.00 0.00 0.00 6.13
5368 6321 5.032220 CAGTTAATTAACGGAAAATCGGGC 58.968 41.667 19.91 0.00 40.96 6.13
5369 6322 5.354792 TCCAGTTAATTAACGGAAAATCGGG 59.645 40.000 25.93 16.25 40.96 5.14
5370 6323 6.128227 TGTCCAGTTAATTAACGGAAAATCGG 60.128 38.462 27.96 17.48 39.07 4.18
5371 6324 6.833839 TGTCCAGTTAATTAACGGAAAATCG 58.166 36.000 27.96 14.40 39.07 3.34
5372 6325 8.294577 AGTTGTCCAGTTAATTAACGGAAAATC 58.705 33.333 28.15 23.55 37.85 2.17
5373 6326 8.173542 AGTTGTCCAGTTAATTAACGGAAAAT 57.826 30.769 28.15 22.52 37.85 1.82
5374 6327 7.499895 AGAGTTGTCCAGTTAATTAACGGAAAA 59.500 33.333 27.96 26.48 39.07 2.29
5375 6328 6.993902 AGAGTTGTCCAGTTAATTAACGGAAA 59.006 34.615 27.96 23.85 39.07 3.13
5376 6329 6.527423 AGAGTTGTCCAGTTAATTAACGGAA 58.473 36.000 27.96 20.12 39.07 4.30
5377 6330 6.014840 AGAGAGTTGTCCAGTTAATTAACGGA 60.015 38.462 24.48 24.81 40.96 4.69
5378 6331 6.164176 AGAGAGTTGTCCAGTTAATTAACGG 58.836 40.000 22.56 22.56 40.96 4.44
5379 6332 7.599245 AGAAGAGAGTTGTCCAGTTAATTAACG 59.401 37.037 19.92 15.03 40.96 3.18
5380 6333 8.834749 AGAAGAGAGTTGTCCAGTTAATTAAC 57.165 34.615 18.77 18.77 36.46 2.01
5381 6334 9.847224 AAAGAAGAGAGTTGTCCAGTTAATTAA 57.153 29.630 0.00 0.00 0.00 1.40
5382 6335 9.847224 AAAAGAAGAGAGTTGTCCAGTTAATTA 57.153 29.630 0.00 0.00 0.00 1.40
5383 6336 8.753497 AAAAGAAGAGAGTTGTCCAGTTAATT 57.247 30.769 0.00 0.00 0.00 1.40
5384 6337 8.753497 AAAAAGAAGAGAGTTGTCCAGTTAAT 57.247 30.769 0.00 0.00 0.00 1.40
5385 6338 9.675464 TTAAAAAGAAGAGAGTTGTCCAGTTAA 57.325 29.630 0.00 0.00 0.00 2.01
5386 6339 9.847224 ATTAAAAAGAAGAGAGTTGTCCAGTTA 57.153 29.630 0.00 0.00 0.00 2.24
5387 6340 8.753497 ATTAAAAAGAAGAGAGTTGTCCAGTT 57.247 30.769 0.00 0.00 0.00 3.16
5388 6341 8.753497 AATTAAAAAGAAGAGAGTTGTCCAGT 57.247 30.769 0.00 0.00 0.00 4.00
5411 6364 9.374838 GGCAAAAGATTTGTCTCATCAATTAAT 57.625 29.630 4.90 0.00 0.00 1.40
5412 6365 8.587608 AGGCAAAAGATTTGTCTCATCAATTAA 58.412 29.630 4.21 0.00 25.88 1.40
5413 6366 8.125978 AGGCAAAAGATTTGTCTCATCAATTA 57.874 30.769 4.21 0.00 25.88 1.40
5414 6367 7.001099 AGGCAAAAGATTTGTCTCATCAATT 57.999 32.000 4.21 0.00 25.88 2.32
5415 6368 6.600882 AGGCAAAAGATTTGTCTCATCAAT 57.399 33.333 4.21 0.00 25.88 2.57
5416 6369 6.409524 AAGGCAAAAGATTTGTCTCATCAA 57.590 33.333 10.07 0.00 32.49 2.57
5417 6370 5.335113 CGAAGGCAAAAGATTTGTCTCATCA 60.335 40.000 10.07 0.00 32.49 3.07
5418 6371 5.091431 CGAAGGCAAAAGATTTGTCTCATC 58.909 41.667 10.07 5.08 32.49 2.92
5419 6372 4.520492 ACGAAGGCAAAAGATTTGTCTCAT 59.480 37.500 10.07 0.00 32.49 2.90
5420 6373 3.882888 ACGAAGGCAAAAGATTTGTCTCA 59.117 39.130 10.07 0.00 32.49 3.27
5421 6374 4.489679 ACGAAGGCAAAAGATTTGTCTC 57.510 40.909 10.07 4.30 32.49 3.36
5422 6375 4.918810 AACGAAGGCAAAAGATTTGTCT 57.081 36.364 4.21 4.21 35.63 3.41
5423 6376 5.040635 TGAAACGAAGGCAAAAGATTTGTC 58.959 37.500 0.00 0.00 0.00 3.18
5424 6377 5.004922 TGAAACGAAGGCAAAAGATTTGT 57.995 34.783 4.90 0.00 0.00 2.83
5425 6378 5.964887 TTGAAACGAAGGCAAAAGATTTG 57.035 34.783 0.00 0.00 0.00 2.32
5426 6379 6.976636 TTTTGAAACGAAGGCAAAAGATTT 57.023 29.167 0.00 0.00 36.80 2.17
5427 6380 6.976636 TTTTTGAAACGAAGGCAAAAGATT 57.023 29.167 0.00 0.00 41.02 2.40
5454 6407 4.818546 CGTCTTTCAGGGCATTGAGATATT 59.181 41.667 0.00 0.00 0.00 1.28
5466 6419 4.377897 ACTGAACTAAACGTCTTTCAGGG 58.622 43.478 22.20 8.57 46.16 4.45
5497 6454 1.200519 TCCCTTCCTGAATACACCGG 58.799 55.000 0.00 0.00 0.00 5.28
5498 6455 3.134804 AGAATCCCTTCCTGAATACACCG 59.865 47.826 0.00 0.00 31.27 4.94
5578 6535 5.023920 CACTTATTAAGCATGCAAGTGACG 58.976 41.667 29.93 12.98 45.67 4.35
5594 6551 7.362142 GCCTAAAAGAGTTAAGCAGCACTTATT 60.362 37.037 0.00 0.00 40.55 1.40
5607 6564 6.532657 GCAGTTATACACGCCTAAAAGAGTTA 59.467 38.462 0.00 0.00 0.00 2.24
5642 6599 4.748102 TCTGTCGGTTTCACTGTATTTGAC 59.252 41.667 0.00 0.00 0.00 3.18
5650 6608 4.552166 AATTTGTCTGTCGGTTTCACTG 57.448 40.909 0.00 0.00 0.00 3.66
5671 6629 3.517500 TGCAGTGATGTTCCCACATAGTA 59.482 43.478 0.00 0.00 44.22 1.82
5672 6630 2.305635 TGCAGTGATGTTCCCACATAGT 59.694 45.455 0.00 0.00 44.22 2.12
5673 6631 2.989909 TGCAGTGATGTTCCCACATAG 58.010 47.619 0.00 0.00 44.22 2.23
5747 6706 5.529060 GTCTACAATTGAGGATGATGGGAAC 59.471 44.000 13.59 0.00 0.00 3.62
5841 6803 8.432013 TCAGTTCCAAACATCTATATGTATGCT 58.568 33.333 0.00 0.00 45.79 3.79
5852 6814 3.406764 GCACTCTCAGTTCCAAACATCT 58.593 45.455 0.00 0.00 0.00 2.90
5975 6937 7.396540 AGCTTTCAAGTAATATGGTTTGAGG 57.603 36.000 0.00 0.00 31.85 3.86
6056 7018 0.320946 CTTGGGGCTTGCATTTGGTG 60.321 55.000 0.00 0.00 0.00 4.17
6325 7287 4.869861 AGTTCAAAAGTCTTGCGCAATTTT 59.130 33.333 25.26 22.85 0.00 1.82
6352 7314 9.123902 TGAGTCATTTTATAATTGTGGATGAGG 57.876 33.333 0.00 0.00 0.00 3.86
6499 7482 8.851541 ATTTACCTAACGAAATTCCTGTTACA 57.148 30.769 0.00 0.00 0.00 2.41
6516 7499 6.603201 CCAGCAGGAATTGAGAAATTTACCTA 59.397 38.462 0.00 0.00 36.89 3.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.