Multiple sequence alignment - TraesCS1B01G199200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G199200 chr1B 100.000 5825 0 0 2315 8139 357424001 357418177 0.000000e+00 10757.0
1 TraesCS1B01G199200 chr1B 100.000 2013 0 0 1 2013 357426315 357424303 0.000000e+00 3718.0
2 TraesCS1B01G199200 chr1B 82.528 269 24 9 7887 8134 329909406 329909672 1.780000e-51 215.0
3 TraesCS1B01G199200 chr1B 87.654 162 17 2 7981 8139 575139493 575139654 1.390000e-42 185.0
4 TraesCS1B01G199200 chr1B 88.199 161 9 6 7982 8134 603564443 603564285 5.020000e-42 183.0
5 TraesCS1B01G199200 chr1A 95.256 1834 71 6 5924 7742 327536339 327538171 0.000000e+00 2891.0
6 TraesCS1B01G199200 chr1A 95.430 1466 35 11 4456 5895 327534887 327536346 0.000000e+00 2307.0
7 TraesCS1B01G199200 chr1A 94.422 1004 49 4 2326 3323 327532959 327533961 0.000000e+00 1537.0
8 TraesCS1B01G199200 chr1A 95.851 940 29 5 1078 2013 327531759 327532692 0.000000e+00 1511.0
9 TraesCS1B01G199200 chr1A 92.949 936 53 9 3434 4359 327533957 327534889 0.000000e+00 1351.0
10 TraesCS1B01G199200 chr1A 85.278 1080 61 41 15 1034 327530713 327531754 0.000000e+00 1024.0
11 TraesCS1B01G199200 chr1A 79.639 388 40 18 7781 8139 327538284 327538661 8.160000e-60 243.0
12 TraesCS1B01G199200 chr1A 86.957 161 19 2 7981 8139 520858689 520858849 6.490000e-41 180.0
13 TraesCS1B01G199200 chr1D 92.480 1835 87 23 4456 6255 255498644 255500462 0.000000e+00 2577.0
14 TraesCS1B01G199200 chr1D 95.704 1513 55 6 6256 7765 255500506 255502011 0.000000e+00 2425.0
15 TraesCS1B01G199200 chr1D 93.031 1564 58 25 1 1538 255493237 255494775 0.000000e+00 2237.0
16 TraesCS1B01G199200 chr1D 91.471 938 40 14 3434 4359 255497737 255498646 0.000000e+00 1253.0
17 TraesCS1B01G199200 chr1D 95.223 649 28 2 2535 3180 255496440 255497088 0.000000e+00 1024.0
18 TraesCS1B01G199200 chr1D 93.182 484 12 4 1538 2013 255495676 255496146 0.000000e+00 691.0
19 TraesCS1B01G199200 chr1D 92.072 391 20 6 7756 8139 255502029 255502415 2.580000e-149 540.0
20 TraesCS1B01G199200 chr1D 97.653 213 5 0 2337 2549 255496188 255496400 4.640000e-97 366.0
21 TraesCS1B01G199200 chr1D 93.548 155 7 1 3172 3323 255497587 255497741 2.290000e-55 228.0
22 TraesCS1B01G199200 chr1D 78.415 366 40 21 7807 8139 34949689 34950048 1.390000e-47 202.0
23 TraesCS1B01G199200 chr1D 95.161 124 5 1 3322 3445 28313637 28313515 2.320000e-45 195.0
24 TraesCS1B01G199200 chr1D 92.562 121 7 2 4356 4475 445993578 445993697 1.090000e-38 172.0
25 TraesCS1B01G199200 chr5A 83.065 248 24 11 7906 8139 6481712 6481469 8.280000e-50 209.0
26 TraesCS1B01G199200 chr3D 77.500 400 53 15 7774 8139 30290227 30289831 1.070000e-48 206.0
27 TraesCS1B01G199200 chr3D 89.032 155 17 0 7985 8139 457907567 457907413 8.340000e-45 193.0
28 TraesCS1B01G199200 chr3D 98.113 106 2 0 4356 4461 529790944 529790839 1.390000e-42 185.0
29 TraesCS1B01G199200 chr4B 97.479 119 3 0 3320 3438 628068095 628067977 3.850000e-48 204.0
30 TraesCS1B01G199200 chr4B 91.200 125 7 4 4356 4479 272861393 272861272 5.050000e-37 167.0
31 TraesCS1B01G199200 chr5B 95.902 122 5 0 3320 3441 403545836 403545715 1.790000e-46 198.0
32 TraesCS1B01G199200 chr5B 95.161 124 6 0 3315 3438 611922696 611922819 6.440000e-46 196.0
33 TraesCS1B01G199200 chr5B 95.161 124 5 1 3320 3443 571209384 571209262 2.320000e-45 195.0
34 TraesCS1B01G199200 chr5B 95.122 123 5 1 3320 3442 451432869 451432990 8.340000e-45 193.0
35 TraesCS1B01G199200 chr5B 94.690 113 4 2 4356 4466 138779427 138779315 3.020000e-39 174.0
36 TraesCS1B01G199200 chr5B 81.043 211 32 7 7905 8108 17569566 17569775 2.350000e-35 161.0
37 TraesCS1B01G199200 chr2D 93.939 132 5 3 3319 3448 158283412 158283282 6.440000e-46 196.0
38 TraesCS1B01G199200 chr4D 93.798 129 6 2 3315 3441 72256255 72256127 8.340000e-45 193.0
39 TraesCS1B01G199200 chr4D 93.913 115 6 1 4356 4469 195030545 195030659 1.090000e-38 172.0
40 TraesCS1B01G199200 chr4D 79.781 183 33 4 7800 7980 55714924 55714744 6.630000e-26 130.0
41 TraesCS1B01G199200 chr4A 91.367 139 9 2 3303 3438 544199299 544199437 3.880000e-43 187.0
42 TraesCS1B01G199200 chr4A 98.077 104 2 0 4356 4459 362098359 362098462 1.800000e-41 182.0
43 TraesCS1B01G199200 chr4A 91.667 132 7 4 4356 4486 596221223 596221351 6.490000e-41 180.0
44 TraesCS1B01G199200 chr7A 77.874 348 43 16 7821 8139 241740867 241741209 1.390000e-42 185.0
45 TraesCS1B01G199200 chr7A 79.085 153 19 10 7830 7980 63441114 63441255 8.700000e-15 93.5
46 TraesCS1B01G199200 chr3B 92.437 119 7 2 4356 4474 809849029 809849145 1.400000e-37 169.0
47 TraesCS1B01G199200 chr3B 91.200 125 8 3 4356 4480 272137348 272137469 5.050000e-37 167.0
48 TraesCS1B01G199200 chr3B 79.524 210 33 9 7774 7980 24357535 24357737 3.060000e-29 141.0
49 TraesCS1B01G199200 chr3B 79.426 209 34 8 7774 7980 24378906 24379107 1.100000e-28 139.0
50 TraesCS1B01G199200 chr5D 79.310 116 15 5 5403 5512 543310973 543310861 1.130000e-08 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G199200 chr1B 357418177 357426315 8138 True 7237.500000 10757 100.000000 1 8139 2 chr1B.!!$R2 8138
1 TraesCS1B01G199200 chr1A 327530713 327538661 7948 False 1552.000000 2891 91.260714 15 8139 7 chr1A.!!$F2 8124
2 TraesCS1B01G199200 chr1D 255493237 255502415 9178 False 1260.111111 2577 93.818222 1 8139 9 chr1D.!!$F3 8138

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
583 625 0.107606 CCGAGACCGAGAGAGAAGGA 60.108 60.000 0.00 0.0 38.22 3.36 F
586 628 1.404035 GAGACCGAGAGAGAAGGAAGC 59.596 57.143 0.00 0.0 0.00 3.86 F
1488 1566 2.490903 GCCCATGCCATCTATGTGAATC 59.509 50.000 0.00 0.0 0.00 2.52 F
2725 3766 0.036294 GAAGCTACCCGACTTTGCCT 60.036 55.000 0.00 0.0 0.00 4.75 F
3338 4892 0.032813 AATACTCCCTCCGTCCGGAA 60.033 55.000 5.23 0.0 44.66 4.30 F
3341 4895 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.0 44.66 1.40 F
3343 4897 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.0 44.66 2.12 F
4373 5945 0.330604 AATGTGCCAGAGCCATGAGT 59.669 50.000 0.00 0.0 38.69 3.41 F
5047 6645 0.109827 CGGCACACATTTTGATGCGA 60.110 50.000 0.00 0.0 39.02 5.10 F
6348 8009 0.390492 AACTGCTTTTGCCAAGCTCC 59.610 50.000 16.39 0.0 46.87 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1488 1566 1.225475 GCAACGACTCGAATGCACG 60.225 57.895 21.07 0.00 40.55 5.34 R
1513 1591 1.896220 TTTCAGCAGCTAACCACCAG 58.104 50.000 0.00 0.00 0.00 4.00 R
3321 4875 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59 R
4356 5928 0.607217 CAACTCATGGCTCTGGCACA 60.607 55.000 0.00 0.00 41.84 4.57 R
4395 5967 0.714180 TGGGGTAGGCTAGAGGTGAA 59.286 55.000 0.00 0.00 0.00 3.18 R
4396 5968 0.714180 TTGGGGTAGGCTAGAGGTGA 59.286 55.000 0.00 0.00 0.00 4.02 R
4398 5970 0.717196 AGTTGGGGTAGGCTAGAGGT 59.283 55.000 0.00 0.00 0.00 3.85 R
5990 7600 1.971357 CATTAGGGGATACGTCTGGCT 59.029 52.381 0.00 0.00 37.60 4.75 R
6784 8453 0.106819 GATTGTGATGGAGGCTGGCT 60.107 55.000 2.24 2.24 0.00 4.75 R
7787 9560 0.469331 ACCGTTCCCTCTGTCTCACA 60.469 55.000 0.00 0.00 0.00 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 2.842496 AGCTGAACAGATCTGATTGGGA 59.158 45.455 29.27 5.72 0.00 4.37
66 67 3.681897 AGCAAGCTCAACAAGAATACTCG 59.318 43.478 0.00 0.00 0.00 4.18
127 136 6.039941 TGAAGAAGCCTAGCATCTAGAAGTAC 59.960 42.308 0.00 0.00 35.50 2.73
137 146 7.921786 AGCATCTAGAAGTACTATCTAGCTG 57.078 40.000 23.85 23.85 43.92 4.24
139 148 7.606456 AGCATCTAGAAGTACTATCTAGCTGAC 59.394 40.741 27.72 22.41 42.26 3.51
140 149 7.606456 GCATCTAGAAGTACTATCTAGCTGACT 59.394 40.741 27.72 14.56 42.26 3.41
169 185 1.452145 GGCTGTGCCGGAACAAGAAA 61.452 55.000 18.16 0.00 39.62 2.52
233 259 2.125512 CGAAGGAGTGGGGAAGCG 60.126 66.667 0.00 0.00 0.00 4.68
234 260 2.436824 GAAGGAGTGGGGAAGCGC 60.437 66.667 0.00 0.00 0.00 5.92
307 333 0.528684 CTCCTCGAAGCCGAACATCC 60.529 60.000 0.00 0.00 45.04 3.51
506 544 4.270153 TCACCTGGGGCTGGGAGT 62.270 66.667 0.00 0.00 0.00 3.85
576 618 3.432588 ACGCACCGAGACCGAGAG 61.433 66.667 0.00 0.00 38.22 3.20
577 619 3.125573 CGCACCGAGACCGAGAGA 61.126 66.667 0.00 0.00 38.22 3.10
582 624 0.393267 ACCGAGACCGAGAGAGAAGG 60.393 60.000 0.00 0.00 38.22 3.46
583 625 0.107606 CCGAGACCGAGAGAGAAGGA 60.108 60.000 0.00 0.00 38.22 3.36
586 628 1.404035 GAGACCGAGAGAGAAGGAAGC 59.596 57.143 0.00 0.00 0.00 3.86
619 661 3.726517 CACGCGCTTTGGACAGGG 61.727 66.667 5.73 0.00 0.00 4.45
740 782 2.749839 CCAAATTGCCCCTCGCGA 60.750 61.111 9.26 9.26 42.08 5.87
1006 1073 2.615227 ATCGGTTCCTGCCATGGAGC 62.615 60.000 18.40 2.26 37.43 4.70
1086 1153 3.706373 CCGGTGGAGGTGGAGGTG 61.706 72.222 0.00 0.00 0.00 4.00
1087 1154 3.706373 CGGTGGAGGTGGAGGTGG 61.706 72.222 0.00 0.00 0.00 4.61
1088 1155 4.035102 GGTGGAGGTGGAGGTGGC 62.035 72.222 0.00 0.00 0.00 5.01
1488 1566 2.490903 GCCCATGCCATCTATGTGAATC 59.509 50.000 0.00 0.00 0.00 2.52
1513 1591 3.218398 CATTCGAGTCGTTGCTTTGTTC 58.782 45.455 13.12 0.00 0.00 3.18
1581 2560 7.063544 GCTATTCTAGTGTCATTTCGTGTTTCT 59.936 37.037 0.00 0.00 0.00 2.52
1712 2691 5.404466 TTTTCCATTTGTATTGGCAGAGG 57.596 39.130 0.00 0.00 34.06 3.69
1902 2888 1.839994 TCAATCCTTTCCAGCCGAGAT 59.160 47.619 0.00 0.00 0.00 2.75
2601 3642 8.311650 AGATTGATATCAAGGTTATTACGTGC 57.688 34.615 21.97 0.00 39.47 5.34
2616 3657 2.306847 ACGTGCTCACCCTTTTCAAAT 58.693 42.857 0.00 0.00 0.00 2.32
2725 3766 0.036294 GAAGCTACCCGACTTTGCCT 60.036 55.000 0.00 0.00 0.00 4.75
2785 3826 9.874205 ATTGGTTTGGTATTTGAATTGATAGTG 57.126 29.630 0.00 0.00 0.00 2.74
2829 3870 3.757745 GTGCAAAATACTATGGCACGT 57.242 42.857 0.00 0.00 44.32 4.49
2832 3873 3.753797 TGCAAAATACTATGGCACGTTCA 59.246 39.130 0.00 0.00 0.00 3.18
2900 3943 6.409695 CCCTCATGGTTCTAGTGGATAAATGT 60.410 42.308 0.00 0.00 0.00 2.71
2902 3945 7.227512 CCTCATGGTTCTAGTGGATAAATGTTC 59.772 40.741 0.00 0.00 0.00 3.18
2909 3952 6.640518 TCTAGTGGATAAATGTTCACTGTCC 58.359 40.000 1.69 0.00 40.24 4.02
3129 4173 4.712763 CGCTGAAGTTTTCTCATGTTACC 58.287 43.478 0.00 0.00 0.00 2.85
3133 4177 5.361427 TGAAGTTTTCTCATGTTACCGTGA 58.639 37.500 0.00 0.00 35.35 4.35
3313 4867 4.706035 TGATTGAAAATTGCACTTTGGCT 58.294 34.783 2.45 0.00 34.04 4.75
3315 4869 5.927689 TGATTGAAAATTGCACTTTGGCTAG 59.072 36.000 2.45 0.00 34.04 3.42
3321 4875 5.473066 AATTGCACTTTGGCTAGTTGAAT 57.527 34.783 0.00 0.00 34.04 2.57
3322 4876 6.588719 AATTGCACTTTGGCTAGTTGAATA 57.411 33.333 0.00 0.00 34.04 1.75
3323 4877 5.371115 TTGCACTTTGGCTAGTTGAATAC 57.629 39.130 0.00 0.00 34.04 1.89
3324 4878 4.651778 TGCACTTTGGCTAGTTGAATACT 58.348 39.130 0.00 0.00 41.04 2.12
3325 4879 4.695455 TGCACTTTGGCTAGTTGAATACTC 59.305 41.667 0.00 0.00 38.33 2.59
3326 4880 4.095036 GCACTTTGGCTAGTTGAATACTCC 59.905 45.833 0.00 0.00 38.33 3.85
3327 4881 4.636206 CACTTTGGCTAGTTGAATACTCCC 59.364 45.833 0.00 0.00 38.33 4.30
3328 4882 4.536489 ACTTTGGCTAGTTGAATACTCCCT 59.464 41.667 0.00 0.00 38.33 4.20
3329 4883 4.755266 TTGGCTAGTTGAATACTCCCTC 57.245 45.455 0.00 0.00 38.33 4.30
3330 4884 3.039011 TGGCTAGTTGAATACTCCCTCC 58.961 50.000 0.00 0.00 38.33 4.30
3331 4885 2.036089 GGCTAGTTGAATACTCCCTCCG 59.964 54.545 0.00 0.00 38.33 4.63
3332 4886 2.694109 GCTAGTTGAATACTCCCTCCGT 59.306 50.000 0.00 0.00 38.33 4.69
3333 4887 3.243468 GCTAGTTGAATACTCCCTCCGTC 60.243 52.174 0.00 0.00 38.33 4.79
3334 4888 2.108970 AGTTGAATACTCCCTCCGTCC 58.891 52.381 0.00 0.00 28.23 4.79
3335 4889 1.108776 TTGAATACTCCCTCCGTCCG 58.891 55.000 0.00 0.00 0.00 4.79
3336 4890 0.754217 TGAATACTCCCTCCGTCCGG 60.754 60.000 0.00 0.00 0.00 5.14
3337 4891 0.466922 GAATACTCCCTCCGTCCGGA 60.467 60.000 0.00 0.00 42.90 5.14
3338 4892 0.032813 AATACTCCCTCCGTCCGGAA 60.033 55.000 5.23 0.00 44.66 4.30
3339 4893 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
3340 4894 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
3341 4895 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
3342 4896 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
3343 4897 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
3344 4898 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
3345 4899 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
3346 4900 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
3347 4901 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
3348 4902 1.135315 TCCGTCCGGAAATACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
3349 4903 1.274596 CGTCCGGAAATACTTGTCGG 58.725 55.000 5.23 0.00 41.80 4.79
3350 4904 1.135315 CGTCCGGAAATACTTGTCGGA 60.135 52.381 5.23 0.00 46.06 4.55
3351 4905 2.953466 TCCGGAAATACTTGTCGGAG 57.047 50.000 0.00 0.00 43.84 4.63
3352 4906 2.449464 TCCGGAAATACTTGTCGGAGA 58.551 47.619 0.00 0.00 43.84 3.71
3353 4907 2.827322 TCCGGAAATACTTGTCGGAGAA 59.173 45.455 0.00 0.00 43.84 2.87
3354 4908 3.258872 TCCGGAAATACTTGTCGGAGAAA 59.741 43.478 0.00 0.00 43.84 2.52
3355 4909 4.081309 TCCGGAAATACTTGTCGGAGAAAT 60.081 41.667 0.00 0.00 43.84 2.17
3356 4910 4.034048 CCGGAAATACTTGTCGGAGAAATG 59.966 45.833 0.00 0.00 42.94 2.32
3357 4911 4.494199 CGGAAATACTTGTCGGAGAAATGC 60.494 45.833 0.00 0.00 39.69 3.56
3358 4912 4.394920 GGAAATACTTGTCGGAGAAATGCA 59.605 41.667 0.00 0.00 39.69 3.96
3359 4913 5.066505 GGAAATACTTGTCGGAGAAATGCAT 59.933 40.000 0.00 0.00 39.69 3.96
3360 4914 6.260050 GGAAATACTTGTCGGAGAAATGCATA 59.740 38.462 0.00 0.00 39.69 3.14
3361 4915 7.201696 GGAAATACTTGTCGGAGAAATGCATAA 60.202 37.037 0.00 0.00 39.69 1.90
3362 4916 7.624360 AATACTTGTCGGAGAAATGCATAAA 57.376 32.000 0.00 0.00 39.69 1.40
3363 4917 5.957842 ACTTGTCGGAGAAATGCATAAAA 57.042 34.783 0.00 0.00 39.69 1.52
3364 4918 6.325919 ACTTGTCGGAGAAATGCATAAAAA 57.674 33.333 0.00 0.00 39.69 1.94
3365 4919 6.924111 ACTTGTCGGAGAAATGCATAAAAAT 58.076 32.000 0.00 0.00 39.69 1.82
3366 4920 6.808212 ACTTGTCGGAGAAATGCATAAAAATG 59.192 34.615 0.00 0.00 39.69 2.32
3367 4921 6.507958 TGTCGGAGAAATGCATAAAAATGA 57.492 33.333 0.00 0.00 39.69 2.57
3368 4922 6.918626 TGTCGGAGAAATGCATAAAAATGAA 58.081 32.000 0.00 0.00 39.69 2.57
3369 4923 7.546358 TGTCGGAGAAATGCATAAAAATGAAT 58.454 30.769 0.00 0.00 39.69 2.57
3370 4924 8.681806 TGTCGGAGAAATGCATAAAAATGAATA 58.318 29.630 0.00 0.00 39.69 1.75
3371 4925 9.683069 GTCGGAGAAATGCATAAAAATGAATAT 57.317 29.630 0.00 0.00 39.69 1.28
3409 4963 9.915629 AAATACGTCTAGATACATTCATTCCTC 57.084 33.333 0.00 0.00 0.00 3.71
3410 4964 6.334102 ACGTCTAGATACATTCATTCCTCC 57.666 41.667 0.00 0.00 0.00 4.30
3411 4965 5.048643 ACGTCTAGATACATTCATTCCTCCG 60.049 44.000 0.00 0.00 0.00 4.63
3412 4966 5.181433 CGTCTAGATACATTCATTCCTCCGA 59.819 44.000 0.00 0.00 0.00 4.55
3413 4967 6.383415 GTCTAGATACATTCATTCCTCCGAC 58.617 44.000 0.00 0.00 0.00 4.79
3414 4968 6.016192 GTCTAGATACATTCATTCCTCCGACA 60.016 42.308 0.00 0.00 0.00 4.35
3415 4969 5.614324 AGATACATTCATTCCTCCGACAA 57.386 39.130 0.00 0.00 0.00 3.18
3416 4970 5.605534 AGATACATTCATTCCTCCGACAAG 58.394 41.667 0.00 0.00 0.00 3.16
3417 4971 3.703001 ACATTCATTCCTCCGACAAGT 57.297 42.857 0.00 0.00 0.00 3.16
3418 4972 4.819105 ACATTCATTCCTCCGACAAGTA 57.181 40.909 0.00 0.00 0.00 2.24
3419 4973 5.359194 ACATTCATTCCTCCGACAAGTAT 57.641 39.130 0.00 0.00 0.00 2.12
3420 4974 5.745227 ACATTCATTCCTCCGACAAGTATT 58.255 37.500 0.00 0.00 0.00 1.89
3421 4975 6.180472 ACATTCATTCCTCCGACAAGTATTT 58.820 36.000 0.00 0.00 0.00 1.40
3422 4976 6.316390 ACATTCATTCCTCCGACAAGTATTTC 59.684 38.462 0.00 0.00 0.00 2.17
3423 4977 5.677319 TCATTCCTCCGACAAGTATTTCT 57.323 39.130 0.00 0.00 0.00 2.52
3424 4978 5.419542 TCATTCCTCCGACAAGTATTTCTG 58.580 41.667 0.00 0.00 0.00 3.02
3425 4979 3.887621 TCCTCCGACAAGTATTTCTGG 57.112 47.619 0.00 0.00 0.00 3.86
3426 4980 3.437213 TCCTCCGACAAGTATTTCTGGA 58.563 45.455 0.00 0.00 0.00 3.86
3427 4981 3.194968 TCCTCCGACAAGTATTTCTGGAC 59.805 47.826 0.00 0.00 0.00 4.02
3428 4982 3.179830 CTCCGACAAGTATTTCTGGACG 58.820 50.000 0.00 0.00 35.64 4.79
3429 4983 2.268298 CCGACAAGTATTTCTGGACGG 58.732 52.381 0.00 0.00 45.37 4.79
3430 4984 3.226346 CGACAAGTATTTCTGGACGGA 57.774 47.619 0.00 0.00 33.12 4.69
3431 4985 3.179830 CGACAAGTATTTCTGGACGGAG 58.820 50.000 0.00 0.00 33.12 4.63
3432 4986 3.522553 GACAAGTATTTCTGGACGGAGG 58.477 50.000 0.00 0.00 0.00 4.30
3433 4987 2.236395 ACAAGTATTTCTGGACGGAGGG 59.764 50.000 0.00 0.00 0.00 4.30
3434 4988 2.500098 CAAGTATTTCTGGACGGAGGGA 59.500 50.000 0.00 0.00 0.00 4.20
3435 4989 2.389715 AGTATTTCTGGACGGAGGGAG 58.610 52.381 0.00 0.00 0.00 4.30
3473 5027 5.250313 GGAACCTCATCCCTGATAGATGATT 59.750 44.000 4.07 0.00 46.73 2.57
3474 5028 6.240118 GGAACCTCATCCCTGATAGATGATTT 60.240 42.308 4.07 1.77 46.73 2.17
3560 5114 7.662897 AGGCTTAGTTTCTTATAGATTCCTCG 58.337 38.462 0.00 0.00 0.00 4.63
3641 5199 8.682710 TCAAAAAGAGATAAATTCCGTAATGGG 58.317 33.333 0.00 0.00 38.76 4.00
3646 5204 5.010282 AGATAAATTCCGTAATGGGATGGC 58.990 41.667 0.00 0.00 35.44 4.40
3740 5298 5.538053 TCCTTTGGTTTCATGCACATTCTAA 59.462 36.000 0.00 0.00 0.00 2.10
3811 5369 4.881019 TCCATGGTGTTTGGGTTAAATG 57.119 40.909 12.58 0.00 34.85 2.32
3842 5400 4.690748 TCGAAACAGTCATGGAATCACTTC 59.309 41.667 0.00 0.00 0.00 3.01
3845 5403 5.954296 AACAGTCATGGAATCACTTCTTG 57.046 39.130 0.00 0.00 0.00 3.02
3850 5408 4.937620 GTCATGGAATCACTTCTTGTAGCA 59.062 41.667 0.00 0.00 0.00 3.49
3936 5499 5.140454 GGGCCAAATAGATGGAAACTGTAT 58.860 41.667 4.39 0.00 43.54 2.29
3947 5510 8.103948 AGATGGAAACTGTATTTTCTCTGTTG 57.896 34.615 0.00 0.00 36.02 3.33
3991 5554 2.046507 CTGCCAGCACTCACCTCC 60.047 66.667 0.00 0.00 0.00 4.30
3997 5567 2.045524 CCAGCACTCACCTCCAGATAT 58.954 52.381 0.00 0.00 0.00 1.63
4366 5938 5.520376 AAATACCATAAATGTGCCAGAGC 57.480 39.130 0.00 0.00 40.48 4.09
4367 5939 1.767759 ACCATAAATGTGCCAGAGCC 58.232 50.000 0.00 0.00 38.69 4.70
4368 5940 1.005805 ACCATAAATGTGCCAGAGCCA 59.994 47.619 0.00 0.00 38.69 4.75
4369 5941 2.313317 CCATAAATGTGCCAGAGCCAT 58.687 47.619 0.00 0.00 38.69 4.40
4370 5942 2.035449 CCATAAATGTGCCAGAGCCATG 59.965 50.000 0.00 0.00 38.69 3.66
4371 5943 2.804986 TAAATGTGCCAGAGCCATGA 57.195 45.000 0.00 0.00 38.69 3.07
4372 5944 1.471119 AAATGTGCCAGAGCCATGAG 58.529 50.000 0.00 0.00 38.69 2.90
4373 5945 0.330604 AATGTGCCAGAGCCATGAGT 59.669 50.000 0.00 0.00 38.69 3.41
4374 5946 0.330604 ATGTGCCAGAGCCATGAGTT 59.669 50.000 0.00 0.00 38.69 3.01
4375 5947 0.607217 TGTGCCAGAGCCATGAGTTG 60.607 55.000 0.00 0.00 38.69 3.16
4384 5956 3.231734 CCATGAGTTGGTCGCAAGA 57.768 52.632 0.00 0.00 40.99 3.02
4398 5970 4.214986 TCGCAAGATCTTATGGGTTTCA 57.785 40.909 7.86 0.00 45.01 2.69
4399 5971 3.938963 TCGCAAGATCTTATGGGTTTCAC 59.061 43.478 7.86 0.00 45.01 3.18
4400 5972 3.065371 CGCAAGATCTTATGGGTTTCACC 59.935 47.826 7.86 0.00 43.02 4.02
4401 5973 4.273318 GCAAGATCTTATGGGTTTCACCT 58.727 43.478 7.86 0.00 38.64 4.00
4402 5974 4.336713 GCAAGATCTTATGGGTTTCACCTC 59.663 45.833 7.86 0.00 38.64 3.85
4403 5975 5.749462 CAAGATCTTATGGGTTTCACCTCT 58.251 41.667 7.86 0.00 38.64 3.69
4404 5976 6.632672 GCAAGATCTTATGGGTTTCACCTCTA 60.633 42.308 7.86 0.00 38.64 2.43
4405 5977 6.739331 AGATCTTATGGGTTTCACCTCTAG 57.261 41.667 0.00 0.00 38.64 2.43
4406 5978 4.755266 TCTTATGGGTTTCACCTCTAGC 57.245 45.455 0.00 0.00 38.64 3.42
4407 5979 3.454812 TCTTATGGGTTTCACCTCTAGCC 59.545 47.826 0.00 0.00 38.64 3.93
4408 5980 1.972588 ATGGGTTTCACCTCTAGCCT 58.027 50.000 0.00 0.00 38.64 4.58
4409 5981 2.634639 TGGGTTTCACCTCTAGCCTA 57.365 50.000 0.00 0.00 38.64 3.93
4410 5982 2.185387 TGGGTTTCACCTCTAGCCTAC 58.815 52.381 0.00 0.00 38.64 3.18
4411 5983 1.485480 GGGTTTCACCTCTAGCCTACC 59.515 57.143 0.00 0.00 38.64 3.18
4412 5984 1.485480 GGTTTCACCTCTAGCCTACCC 59.515 57.143 0.00 0.00 34.73 3.69
4413 5985 1.485480 GTTTCACCTCTAGCCTACCCC 59.515 57.143 0.00 0.00 0.00 4.95
4414 5986 0.714180 TTCACCTCTAGCCTACCCCA 59.286 55.000 0.00 0.00 0.00 4.96
4415 5987 0.714180 TCACCTCTAGCCTACCCCAA 59.286 55.000 0.00 0.00 0.00 4.12
4416 5988 0.831307 CACCTCTAGCCTACCCCAAC 59.169 60.000 0.00 0.00 0.00 3.77
4417 5989 0.717196 ACCTCTAGCCTACCCCAACT 59.283 55.000 0.00 0.00 0.00 3.16
4418 5990 1.080666 ACCTCTAGCCTACCCCAACTT 59.919 52.381 0.00 0.00 0.00 2.66
4419 5991 1.486726 CCTCTAGCCTACCCCAACTTG 59.513 57.143 0.00 0.00 0.00 3.16
4420 5992 2.188817 CTCTAGCCTACCCCAACTTGT 58.811 52.381 0.00 0.00 0.00 3.16
4421 5993 2.572104 CTCTAGCCTACCCCAACTTGTT 59.428 50.000 0.00 0.00 0.00 2.83
4422 5994 2.983898 TCTAGCCTACCCCAACTTGTTT 59.016 45.455 0.00 0.00 0.00 2.83
4423 5995 1.995376 AGCCTACCCCAACTTGTTTG 58.005 50.000 0.00 0.00 34.63 2.93
4434 6006 4.292977 CAACTTGTTTGGGACTGAAGTC 57.707 45.455 1.63 1.63 44.04 3.01
4435 6007 3.933861 ACTTGTTTGGGACTGAAGTCT 57.066 42.857 10.17 0.00 44.20 3.24
4436 6008 4.236527 ACTTGTTTGGGACTGAAGTCTT 57.763 40.909 10.17 0.00 44.20 3.01
4437 6009 4.600062 ACTTGTTTGGGACTGAAGTCTTT 58.400 39.130 10.17 0.00 44.20 2.52
4438 6010 4.399303 ACTTGTTTGGGACTGAAGTCTTTG 59.601 41.667 10.17 0.00 44.20 2.77
4439 6011 3.963129 TGTTTGGGACTGAAGTCTTTGT 58.037 40.909 10.17 0.00 44.20 2.83
4440 6012 4.340617 TGTTTGGGACTGAAGTCTTTGTT 58.659 39.130 10.17 0.00 44.20 2.83
4441 6013 4.157656 TGTTTGGGACTGAAGTCTTTGTTG 59.842 41.667 10.17 0.00 44.20 3.33
4442 6014 3.644966 TGGGACTGAAGTCTTTGTTGT 57.355 42.857 10.17 0.00 44.20 3.32
4443 6015 3.963129 TGGGACTGAAGTCTTTGTTGTT 58.037 40.909 10.17 0.00 44.20 2.83
4444 6016 3.694072 TGGGACTGAAGTCTTTGTTGTTG 59.306 43.478 10.17 0.00 44.20 3.33
4445 6017 3.694566 GGGACTGAAGTCTTTGTTGTTGT 59.305 43.478 10.17 0.00 44.20 3.32
4446 6018 4.157840 GGGACTGAAGTCTTTGTTGTTGTT 59.842 41.667 10.17 0.00 44.20 2.83
4447 6019 5.095490 GGACTGAAGTCTTTGTTGTTGTTG 58.905 41.667 10.17 0.00 44.20 3.33
4448 6020 5.335661 GGACTGAAGTCTTTGTTGTTGTTGT 60.336 40.000 10.17 0.00 44.20 3.32
4449 6021 6.084326 ACTGAAGTCTTTGTTGTTGTTGTT 57.916 33.333 0.00 0.00 0.00 2.83
4450 6022 5.920273 ACTGAAGTCTTTGTTGTTGTTGTTG 59.080 36.000 0.00 0.00 0.00 3.33
4451 6023 5.837437 TGAAGTCTTTGTTGTTGTTGTTGT 58.163 33.333 0.00 0.00 0.00 3.32
4452 6024 6.276847 TGAAGTCTTTGTTGTTGTTGTTGTT 58.723 32.000 0.00 0.00 0.00 2.83
4453 6025 6.199908 TGAAGTCTTTGTTGTTGTTGTTGTTG 59.800 34.615 0.00 0.00 0.00 3.33
4454 6026 5.596845 AGTCTTTGTTGTTGTTGTTGTTGT 58.403 33.333 0.00 0.00 0.00 3.32
4459 6031 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
4872 6447 1.519455 CTGGCCGAGGTCGATTGTC 60.519 63.158 0.00 0.00 43.02 3.18
4920 6515 2.173569 AGGCCTCTTGACCCATGATTAC 59.826 50.000 0.00 0.00 0.00 1.89
4989 6585 7.309770 AGATCTTCTCCTAGTCTTGTTTTGT 57.690 36.000 0.00 0.00 0.00 2.83
4990 6586 7.740805 AGATCTTCTCCTAGTCTTGTTTTGTT 58.259 34.615 0.00 0.00 0.00 2.83
4991 6587 8.214364 AGATCTTCTCCTAGTCTTGTTTTGTTT 58.786 33.333 0.00 0.00 0.00 2.83
5033 6629 9.562583 TTGATTTTCTATTAATAACAACGGCAC 57.437 29.630 0.00 0.00 0.00 5.01
5047 6645 0.109827 CGGCACACATTTTGATGCGA 60.110 50.000 0.00 0.00 39.02 5.10
5056 6654 5.214417 CACATTTTGATGCGAGTTCAGAAA 58.786 37.500 0.00 0.00 0.00 2.52
5062 6660 5.536554 TGATGCGAGTTCAGAAAATCTTC 57.463 39.130 0.00 0.00 0.00 2.87
5123 6721 3.065371 GTCTCCGTTATGCATTTTGGAGG 59.935 47.826 27.10 14.92 32.95 4.30
5221 6820 8.920665 CACTTATCATATTAGTGCTGCTTCTAC 58.079 37.037 0.00 0.00 33.63 2.59
5292 6891 6.323225 GCCTTGGACTACAGGTACTTATCTTA 59.677 42.308 0.00 0.00 34.60 2.10
5297 6896 9.925545 TGGACTACAGGTACTTATCTTATAACA 57.074 33.333 0.00 0.00 34.60 2.41
5379 6984 8.302438 CCTTTCATTTGAGCTTCTCTATTTTGT 58.698 33.333 0.00 0.00 0.00 2.83
5519 7126 4.152938 GGCAAAAGCCTTTTTCAGCATTAG 59.847 41.667 11.40 0.00 34.34 1.73
5775 7385 6.957631 TGATTTCCATCGGGCTATATACAAT 58.042 36.000 0.00 0.00 31.08 2.71
5817 7427 4.868734 CGTTTCCTGTCTTCCATAGTAACC 59.131 45.833 0.00 0.00 0.00 2.85
5902 7512 8.721478 TCTTCAGTTTGAATACATTAGCTGAAC 58.279 33.333 0.00 0.00 35.59 3.18
5958 7568 4.399303 GTGCCCTTCTTAATGTTGCAGTAT 59.601 41.667 0.00 0.00 0.00 2.12
5990 7600 4.163427 GAGGATACCATGAGATCTGGGAA 58.837 47.826 0.00 0.00 38.14 3.97
6110 7720 5.414789 TCTGCTAACTGCCTGTTATGTTA 57.585 39.130 0.00 0.00 40.02 2.41
6111 7721 5.989477 TCTGCTAACTGCCTGTTATGTTAT 58.011 37.500 0.00 0.00 40.02 1.89
6112 7722 7.119709 TCTGCTAACTGCCTGTTATGTTATA 57.880 36.000 0.00 0.00 40.02 0.98
6143 7753 8.845227 TGTAAAAACTTGAAGATTCATGTAGCA 58.155 29.630 12.77 6.84 42.52 3.49
6297 7955 5.119694 TGTGGCTGCGATATGTGTATTTTA 58.880 37.500 0.00 0.00 0.00 1.52
6341 8002 6.603237 AAATTTACTTGAACTGCTTTTGCC 57.397 33.333 0.00 0.00 46.87 4.52
6348 8009 0.390492 AACTGCTTTTGCCAAGCTCC 59.610 50.000 16.39 0.00 46.87 4.70
6433 8101 4.685169 ATATTGCTTTGTCGGTTGTCAG 57.315 40.909 0.00 0.00 0.00 3.51
6461 8129 3.776969 ACACATTTCTGCCCTCTAGATGA 59.223 43.478 0.00 0.00 0.00 2.92
6526 8194 8.908903 ACTTTGGTCTTGTTGTCATATTAAACA 58.091 29.630 0.00 0.00 32.19 2.83
6547 8215 1.559368 TGCAGTTGCCTTTGCCATAT 58.441 45.000 1.06 0.00 39.54 1.78
6583 8251 3.011517 ACCGCTCCTCCAGCCAAT 61.012 61.111 0.00 0.00 46.74 3.16
6706 8374 3.003689 CAGTGCAAAGTTGGAGTTACTGG 59.996 47.826 0.00 0.00 32.77 4.00
6712 8380 5.163550 GCAAAGTTGGAGTTACTGGTTTCTT 60.164 40.000 0.00 0.00 0.00 2.52
6714 8382 6.451064 AAGTTGGAGTTACTGGTTTCTTTG 57.549 37.500 0.00 0.00 0.00 2.77
6775 8444 4.456566 GGTTTTCTTGTAAATCGTAGGCCA 59.543 41.667 5.01 0.00 0.00 5.36
6960 8629 6.588719 TGTATCTGCCAGTTGCTTTTATTT 57.411 33.333 0.00 0.00 42.00 1.40
7117 8786 3.113260 AGAGGGAAAAGTGACGTTCTG 57.887 47.619 0.00 0.00 0.00 3.02
7303 8972 3.107601 TCTTCCTCCTGGTAAGACATGG 58.892 50.000 0.00 0.00 30.30 3.66
7310 8979 1.003580 CTGGTAAGACATGGTGTGCCT 59.996 52.381 0.00 0.00 35.27 4.75
7362 9031 3.066760 AGTTGTCTTCTTTTTGCGAAGGG 59.933 43.478 0.00 0.00 38.66 3.95
7400 9071 9.554395 TCTACACTTAATCATCAAAAACTGTCA 57.446 29.630 0.00 0.00 0.00 3.58
7471 9143 1.145945 TGCCCAAACCCATACTCACAA 59.854 47.619 0.00 0.00 0.00 3.33
7478 9150 5.508994 CCAAACCCATACTCACAAAAACCTC 60.509 44.000 0.00 0.00 0.00 3.85
7753 9466 4.023291 TGGGAAGGGAAGAAAATACATGC 58.977 43.478 0.00 0.00 0.00 4.06
7754 9467 3.384789 GGGAAGGGAAGAAAATACATGCC 59.615 47.826 0.00 0.00 0.00 4.40
7787 9560 3.199508 AGAGCACTCCTATGTTGCTTCAT 59.800 43.478 0.00 0.00 35.83 2.57
7804 9577 1.546029 TCATGTGAGACAGAGGGAACG 59.454 52.381 0.00 0.00 0.00 3.95
7864 9637 4.021925 GGAGCCACAGCCTCGGTT 62.022 66.667 0.00 0.00 41.25 4.44
7868 9641 1.007387 GCCACAGCCTCGGTTTTTG 60.007 57.895 0.00 0.00 0.00 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 2.381725 TCAGATCTGTTCAGCTGCTG 57.618 50.000 23.31 23.31 0.00 4.41
31 32 3.080319 GAGCTTGCTCAAGTCAATTCCT 58.920 45.455 16.71 0.00 40.45 3.36
66 67 1.372087 CTGCTGGGCTCGTGGAATTC 61.372 60.000 0.00 0.00 0.00 2.17
137 146 1.719600 CACAGCCTGTTGAGCTAGTC 58.280 55.000 0.00 0.00 38.95 2.59
139 148 1.023513 GGCACAGCCTGTTGAGCTAG 61.024 60.000 0.00 0.00 46.69 3.42
140 149 1.003355 GGCACAGCCTGTTGAGCTA 60.003 57.895 0.00 0.00 46.69 3.32
151 167 0.383949 TTTTCTTGTTCCGGCACAGC 59.616 50.000 7.09 0.00 0.00 4.40
169 185 0.679505 TGCGAGTTCTGTGGCTAGTT 59.320 50.000 0.00 0.00 0.00 2.24
307 333 2.587194 CATGGCCGGCGAGAAGAG 60.587 66.667 22.54 1.52 0.00 2.85
351 377 3.984186 CTTGGCCTCTCCCCTCGGA 62.984 68.421 3.32 0.00 36.45 4.55
353 379 1.341156 ATTCTTGGCCTCTCCCCTCG 61.341 60.000 3.32 0.00 0.00 4.63
520 558 4.760047 CCCCTCACCGGCGACTTG 62.760 72.222 9.30 2.14 0.00 3.16
576 618 1.187087 TTCCTCCTCGCTTCCTTCTC 58.813 55.000 0.00 0.00 0.00 2.87
577 619 1.645710 TTTCCTCCTCGCTTCCTTCT 58.354 50.000 0.00 0.00 0.00 2.85
582 624 2.158900 TGATCCATTTCCTCCTCGCTTC 60.159 50.000 0.00 0.00 0.00 3.86
583 625 1.839994 TGATCCATTTCCTCCTCGCTT 59.160 47.619 0.00 0.00 0.00 4.68
586 628 1.858091 CGTGATCCATTTCCTCCTCG 58.142 55.000 0.00 0.00 0.00 4.63
787 829 2.046217 GGCCGAGGGTTGAAGTCC 60.046 66.667 0.00 0.00 0.00 3.85
788 830 2.046217 GGGCCGAGGGTTGAAGTC 60.046 66.667 0.00 0.00 0.00 3.01
870 928 2.203567 TGGGCAAACGGAAAGGGG 60.204 61.111 0.00 0.00 0.00 4.79
1069 1136 3.706373 CACCTCCACCTCCACCGG 61.706 72.222 0.00 0.00 0.00 5.28
1078 1145 4.394712 CTCCACCGCCACCTCCAC 62.395 72.222 0.00 0.00 0.00 4.02
1081 1148 4.083862 GTCCTCCACCGCCACCTC 62.084 72.222 0.00 0.00 0.00 3.85
1084 1151 4.436998 CTCGTCCTCCACCGCCAC 62.437 72.222 0.00 0.00 0.00 5.01
1143 1210 0.679321 CCTTTGCCTCCTCCTGCTTC 60.679 60.000 0.00 0.00 0.00 3.86
1334 1401 0.108186 TGGAGTGACGATCATGGCAC 60.108 55.000 0.00 0.00 0.00 5.01
1335 1402 0.832626 ATGGAGTGACGATCATGGCA 59.167 50.000 0.00 0.00 0.00 4.92
1336 1403 1.869767 GAATGGAGTGACGATCATGGC 59.130 52.381 0.00 0.00 0.00 4.40
1337 1404 3.129109 CTGAATGGAGTGACGATCATGG 58.871 50.000 0.00 0.00 0.00 3.66
1488 1566 1.225475 GCAACGACTCGAATGCACG 60.225 57.895 21.07 0.00 40.55 5.34
1513 1591 1.896220 TTTCAGCAGCTAACCACCAG 58.104 50.000 0.00 0.00 0.00 4.00
1581 2560 2.571212 CAATTGCCGCTACCCTGATAA 58.429 47.619 0.00 0.00 0.00 1.75
1712 2691 2.677199 TCAGCGTCTGATGAAACACTC 58.323 47.619 0.00 0.00 37.63 3.51
1878 2864 2.819608 TCGGCTGGAAAGGATTGAAAAG 59.180 45.455 0.00 0.00 0.00 2.27
1902 2888 2.424601 GGATGAAAACTGCTGCATGCTA 59.575 45.455 20.33 4.40 43.37 3.49
2323 3309 9.480053 AATACAGATGAAGTCCACAAAAATTTG 57.520 29.630 4.40 4.40 43.62 2.32
2597 3638 3.369546 AATTTGAAAAGGGTGAGCACG 57.630 42.857 0.00 0.00 0.00 5.34
2832 3873 8.214721 GCCAAGAGCTTAACAGACTAAATAAT 57.785 34.615 0.00 0.00 38.99 1.28
2859 3902 2.371841 TGAGGGCACATTCTGTACAACT 59.628 45.455 0.00 0.00 0.00 3.16
2860 3903 2.778299 TGAGGGCACATTCTGTACAAC 58.222 47.619 0.00 0.00 0.00 3.32
2875 3918 5.630415 TTTATCCACTAGAACCATGAGGG 57.370 43.478 0.00 0.00 44.81 4.30
2876 3919 6.595682 ACATTTATCCACTAGAACCATGAGG 58.404 40.000 0.00 0.00 42.21 3.86
2900 3943 6.550938 AGATATGAAGTGATGGACAGTGAA 57.449 37.500 0.00 0.00 31.89 3.18
2902 3945 6.257411 GTCAAGATATGAAGTGATGGACAGTG 59.743 42.308 0.00 0.00 40.50 3.66
2909 3952 5.351458 TGTCCGTCAAGATATGAAGTGATG 58.649 41.667 0.00 0.00 40.50 3.07
3129 4173 4.576873 AGACAGACATACTATCTGGTCACG 59.423 45.833 6.92 0.00 46.60 4.35
3133 4177 4.927978 GCAGACAGACATACTATCTGGT 57.072 45.455 7.15 0.00 46.62 4.00
3162 4206 2.106511 ACAACCACTGCAGACCAAGTAT 59.893 45.455 23.35 0.00 0.00 2.12
3267 4818 0.991146 TGGAGGAGTATGCAGCCAAA 59.009 50.000 0.00 0.00 30.93 3.28
3313 4867 3.294214 GGACGGAGGGAGTATTCAACTA 58.706 50.000 0.00 0.00 39.07 2.24
3315 4869 1.202382 CGGACGGAGGGAGTATTCAAC 60.202 57.143 0.00 0.00 0.00 3.18
3321 4875 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
3322 4876 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
3323 4877 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
3324 4878 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
3325 4879 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
3326 4880 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
3327 4881 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
3328 4882 1.135315 CGACAAGTATTTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
3329 4883 1.274596 CGACAAGTATTTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
3330 4884 1.135315 TCCGACAAGTATTTCCGGACG 60.135 52.381 1.83 0.00 43.47 4.79
3331 4885 2.165030 TCTCCGACAAGTATTTCCGGAC 59.835 50.000 1.83 0.00 43.47 4.79
3332 4886 2.449464 TCTCCGACAAGTATTTCCGGA 58.551 47.619 0.00 0.00 45.74 5.14
3333 4887 2.953466 TCTCCGACAAGTATTTCCGG 57.047 50.000 0.00 0.00 41.36 5.14
3334 4888 4.494199 GCATTTCTCCGACAAGTATTTCCG 60.494 45.833 0.00 0.00 0.00 4.30
3335 4889 4.394920 TGCATTTCTCCGACAAGTATTTCC 59.605 41.667 0.00 0.00 0.00 3.13
3336 4890 5.545658 TGCATTTCTCCGACAAGTATTTC 57.454 39.130 0.00 0.00 0.00 2.17
3337 4891 7.624360 TTATGCATTTCTCCGACAAGTATTT 57.376 32.000 3.54 0.00 0.00 1.40
3338 4892 7.624360 TTTATGCATTTCTCCGACAAGTATT 57.376 32.000 3.54 0.00 0.00 1.89
3339 4893 7.624360 TTTTATGCATTTCTCCGACAAGTAT 57.376 32.000 3.54 0.00 0.00 2.12
3340 4894 7.441890 TTTTTATGCATTTCTCCGACAAGTA 57.558 32.000 3.54 0.00 0.00 2.24
3341 4895 5.957842 TTTTATGCATTTCTCCGACAAGT 57.042 34.783 3.54 0.00 0.00 3.16
3342 4896 7.028962 TCATTTTTATGCATTTCTCCGACAAG 58.971 34.615 3.54 0.00 0.00 3.16
3343 4897 6.918626 TCATTTTTATGCATTTCTCCGACAA 58.081 32.000 3.54 0.00 0.00 3.18
3344 4898 6.507958 TCATTTTTATGCATTTCTCCGACA 57.492 33.333 3.54 0.00 0.00 4.35
3345 4899 7.992180 ATTCATTTTTATGCATTTCTCCGAC 57.008 32.000 3.54 0.00 0.00 4.79
3383 4937 9.915629 GAGGAATGAATGTATCTAGACGTATTT 57.084 33.333 0.00 0.00 0.00 1.40
3384 4938 8.524487 GGAGGAATGAATGTATCTAGACGTATT 58.476 37.037 0.00 0.00 0.00 1.89
3385 4939 7.148222 CGGAGGAATGAATGTATCTAGACGTAT 60.148 40.741 0.00 0.00 0.00 3.06
3386 4940 6.148976 CGGAGGAATGAATGTATCTAGACGTA 59.851 42.308 0.00 0.00 0.00 3.57
3387 4941 5.048643 CGGAGGAATGAATGTATCTAGACGT 60.049 44.000 0.00 0.00 0.00 4.34
3388 4942 5.181433 TCGGAGGAATGAATGTATCTAGACG 59.819 44.000 0.00 0.00 0.00 4.18
3389 4943 6.016192 TGTCGGAGGAATGAATGTATCTAGAC 60.016 42.308 0.00 0.00 0.00 2.59
3390 4944 6.068670 TGTCGGAGGAATGAATGTATCTAGA 58.931 40.000 0.00 0.00 0.00 2.43
3391 4945 6.332735 TGTCGGAGGAATGAATGTATCTAG 57.667 41.667 0.00 0.00 0.00 2.43
3392 4946 6.323996 ACTTGTCGGAGGAATGAATGTATCTA 59.676 38.462 0.00 0.00 0.00 1.98
3393 4947 5.129485 ACTTGTCGGAGGAATGAATGTATCT 59.871 40.000 0.00 0.00 0.00 1.98
3394 4948 5.360591 ACTTGTCGGAGGAATGAATGTATC 58.639 41.667 0.00 0.00 0.00 2.24
3395 4949 5.359194 ACTTGTCGGAGGAATGAATGTAT 57.641 39.130 0.00 0.00 0.00 2.29
3396 4950 4.819105 ACTTGTCGGAGGAATGAATGTA 57.181 40.909 0.00 0.00 0.00 2.29
3397 4951 3.703001 ACTTGTCGGAGGAATGAATGT 57.297 42.857 0.00 0.00 0.00 2.71
3398 4952 6.540189 AGAAATACTTGTCGGAGGAATGAATG 59.460 38.462 0.00 0.00 0.00 2.67
3399 4953 6.540189 CAGAAATACTTGTCGGAGGAATGAAT 59.460 38.462 0.00 0.00 0.00 2.57
3400 4954 5.874810 CAGAAATACTTGTCGGAGGAATGAA 59.125 40.000 0.00 0.00 0.00 2.57
3401 4955 5.419542 CAGAAATACTTGTCGGAGGAATGA 58.580 41.667 0.00 0.00 0.00 2.57
3402 4956 4.572389 CCAGAAATACTTGTCGGAGGAATG 59.428 45.833 0.00 0.00 0.00 2.67
3403 4957 4.469945 TCCAGAAATACTTGTCGGAGGAAT 59.530 41.667 0.00 0.00 0.00 3.01
3404 4958 3.835978 TCCAGAAATACTTGTCGGAGGAA 59.164 43.478 0.00 0.00 0.00 3.36
3405 4959 3.194968 GTCCAGAAATACTTGTCGGAGGA 59.805 47.826 0.00 0.00 0.00 3.71
3406 4960 3.522553 GTCCAGAAATACTTGTCGGAGG 58.477 50.000 0.00 0.00 0.00 4.30
3407 4961 3.179830 CGTCCAGAAATACTTGTCGGAG 58.820 50.000 0.00 0.00 0.00 4.63
3408 4962 2.094390 CCGTCCAGAAATACTTGTCGGA 60.094 50.000 0.00 0.00 42.19 4.55
3409 4963 2.094390 TCCGTCCAGAAATACTTGTCGG 60.094 50.000 0.00 0.00 41.47 4.79
3410 4964 3.179830 CTCCGTCCAGAAATACTTGTCG 58.820 50.000 0.00 0.00 0.00 4.35
3411 4965 3.522553 CCTCCGTCCAGAAATACTTGTC 58.477 50.000 0.00 0.00 0.00 3.18
3412 4966 2.236395 CCCTCCGTCCAGAAATACTTGT 59.764 50.000 0.00 0.00 0.00 3.16
3413 4967 2.500098 TCCCTCCGTCCAGAAATACTTG 59.500 50.000 0.00 0.00 0.00 3.16
3414 4968 2.766828 CTCCCTCCGTCCAGAAATACTT 59.233 50.000 0.00 0.00 0.00 2.24
3415 4969 2.292323 ACTCCCTCCGTCCAGAAATACT 60.292 50.000 0.00 0.00 0.00 2.12
3416 4970 2.108970 ACTCCCTCCGTCCAGAAATAC 58.891 52.381 0.00 0.00 0.00 1.89
3417 4971 2.544844 ACTCCCTCCGTCCAGAAATA 57.455 50.000 0.00 0.00 0.00 1.40
3418 4972 2.292323 ACTACTCCCTCCGTCCAGAAAT 60.292 50.000 0.00 0.00 0.00 2.17
3419 4973 1.076677 ACTACTCCCTCCGTCCAGAAA 59.923 52.381 0.00 0.00 0.00 2.52
3420 4974 0.702902 ACTACTCCCTCCGTCCAGAA 59.297 55.000 0.00 0.00 0.00 3.02
3421 4975 1.588239 TACTACTCCCTCCGTCCAGA 58.412 55.000 0.00 0.00 0.00 3.86
3422 4976 2.299521 CTTACTACTCCCTCCGTCCAG 58.700 57.143 0.00 0.00 0.00 3.86
3423 4977 1.684248 GCTTACTACTCCCTCCGTCCA 60.684 57.143 0.00 0.00 0.00 4.02
3424 4978 1.031235 GCTTACTACTCCCTCCGTCC 58.969 60.000 0.00 0.00 0.00 4.79
3425 4979 1.677052 CTGCTTACTACTCCCTCCGTC 59.323 57.143 0.00 0.00 0.00 4.79
3426 4980 1.765230 CTGCTTACTACTCCCTCCGT 58.235 55.000 0.00 0.00 0.00 4.69
3427 4981 0.386113 GCTGCTTACTACTCCCTCCG 59.614 60.000 0.00 0.00 0.00 4.63
3428 4982 1.486211 TGCTGCTTACTACTCCCTCC 58.514 55.000 0.00 0.00 0.00 4.30
3429 4983 2.224161 CCATGCTGCTTACTACTCCCTC 60.224 54.545 0.00 0.00 0.00 4.30
3430 4984 1.765314 CCATGCTGCTTACTACTCCCT 59.235 52.381 0.00 0.00 0.00 4.20
3431 4985 1.762957 TCCATGCTGCTTACTACTCCC 59.237 52.381 0.00 0.00 0.00 4.30
3432 4986 3.198872 GTTCCATGCTGCTTACTACTCC 58.801 50.000 0.00 0.00 0.00 3.85
3433 4987 3.118592 AGGTTCCATGCTGCTTACTACTC 60.119 47.826 0.00 0.00 0.00 2.59
3434 4988 2.840651 AGGTTCCATGCTGCTTACTACT 59.159 45.455 0.00 0.00 0.00 2.57
3435 4989 3.198872 GAGGTTCCATGCTGCTTACTAC 58.801 50.000 0.00 0.00 0.00 2.73
3530 5084 8.669946 AATCTATAAGAAACTAAGCCTCAAGC 57.330 34.615 0.00 0.00 44.25 4.01
3673 5231 7.844009 AGACACGGGAAGATTACTTATGTAAA 58.156 34.615 5.41 0.00 41.36 2.01
3706 5264 3.945285 TGAAACCAAAGGACACTGAGAAC 59.055 43.478 0.00 0.00 0.00 3.01
3740 5298 2.158234 TCCACCCAATAGCCTGGTTTTT 60.158 45.455 0.00 0.00 34.33 1.94
3811 5369 1.865865 TGACTGTTTCGAGAAGGTGC 58.134 50.000 0.00 0.00 0.00 5.01
3887 5447 6.588204 TGCCAAAGAGTTAAGTCAGTTAGAA 58.412 36.000 12.77 0.00 0.00 2.10
3893 5453 3.441572 CCCATGCCAAAGAGTTAAGTCAG 59.558 47.826 12.77 2.36 0.00 3.51
3936 5499 3.892284 TGTACCCTTGCAACAGAGAAAA 58.108 40.909 0.00 0.00 0.00 2.29
3947 5510 3.199880 AGCTGATGTATGTACCCTTGC 57.800 47.619 0.00 0.00 0.00 4.01
3997 5567 7.508977 TCTGGTATGTACATCAGGAATGTCATA 59.491 37.037 12.68 1.48 45.78 2.15
4037 5607 9.790344 AACTATCAAGCTTCTGATATAGCAAAT 57.210 29.630 8.26 0.00 37.60 2.32
4159 5730 1.607225 ATTCAGTATTGCCTGGGGGA 58.393 50.000 0.00 0.00 33.14 4.81
4347 5919 2.240921 TGGCTCTGGCACATTTATGGTA 59.759 45.455 0.00 0.00 38.20 3.25
4348 5920 1.005805 TGGCTCTGGCACATTTATGGT 59.994 47.619 0.00 0.00 38.20 3.55
4349 5921 1.766494 TGGCTCTGGCACATTTATGG 58.234 50.000 0.00 0.00 38.20 2.74
4351 5923 3.220110 CTCATGGCTCTGGCACATTTAT 58.780 45.455 0.00 0.00 41.84 1.40
4352 5924 2.025981 ACTCATGGCTCTGGCACATTTA 60.026 45.455 0.00 0.00 41.84 1.40
4353 5925 1.272313 ACTCATGGCTCTGGCACATTT 60.272 47.619 0.00 0.00 41.84 2.32
4356 5928 0.607217 CAACTCATGGCTCTGGCACA 60.607 55.000 0.00 0.00 41.84 4.57
4357 5929 1.310933 CCAACTCATGGCTCTGGCAC 61.311 60.000 0.00 0.00 43.80 5.01
4358 5930 1.001764 CCAACTCATGGCTCTGGCA 60.002 57.895 0.00 0.00 43.80 4.92
4359 5931 3.915575 CCAACTCATGGCTCTGGC 58.084 61.111 0.00 0.00 43.80 4.85
4367 5939 2.625737 AGATCTTGCGACCAACTCATG 58.374 47.619 0.00 0.00 0.00 3.07
4368 5940 3.340814 AAGATCTTGCGACCAACTCAT 57.659 42.857 7.30 0.00 0.00 2.90
4369 5941 2.839486 AAGATCTTGCGACCAACTCA 57.161 45.000 7.30 0.00 0.00 3.41
4370 5942 3.557595 CCATAAGATCTTGCGACCAACTC 59.442 47.826 18.47 0.00 0.00 3.01
4371 5943 3.535561 CCATAAGATCTTGCGACCAACT 58.464 45.455 18.47 0.00 0.00 3.16
4372 5944 2.614057 CCCATAAGATCTTGCGACCAAC 59.386 50.000 18.47 0.00 0.00 3.77
4373 5945 2.238646 ACCCATAAGATCTTGCGACCAA 59.761 45.455 18.47 0.00 0.00 3.67
4374 5946 1.837439 ACCCATAAGATCTTGCGACCA 59.163 47.619 18.47 0.00 0.00 4.02
4375 5947 2.622064 ACCCATAAGATCTTGCGACC 57.378 50.000 18.47 0.00 0.00 4.79
4376 5948 3.938963 TGAAACCCATAAGATCTTGCGAC 59.061 43.478 18.47 2.59 0.00 5.19
4377 5949 3.938963 GTGAAACCCATAAGATCTTGCGA 59.061 43.478 18.47 0.00 0.00 5.10
4378 5950 4.278678 GTGAAACCCATAAGATCTTGCG 57.721 45.455 18.47 8.44 0.00 4.85
4393 5965 1.485480 GGGGTAGGCTAGAGGTGAAAC 59.515 57.143 0.00 0.00 0.00 2.78
4394 5966 1.079825 TGGGGTAGGCTAGAGGTGAAA 59.920 52.381 0.00 0.00 0.00 2.69
4395 5967 0.714180 TGGGGTAGGCTAGAGGTGAA 59.286 55.000 0.00 0.00 0.00 3.18
4396 5968 0.714180 TTGGGGTAGGCTAGAGGTGA 59.286 55.000 0.00 0.00 0.00 4.02
4397 5969 0.831307 GTTGGGGTAGGCTAGAGGTG 59.169 60.000 0.00 0.00 0.00 4.00
4398 5970 0.717196 AGTTGGGGTAGGCTAGAGGT 59.283 55.000 0.00 0.00 0.00 3.85
4399 5971 1.486726 CAAGTTGGGGTAGGCTAGAGG 59.513 57.143 0.00 0.00 0.00 3.69
4400 5972 2.188817 ACAAGTTGGGGTAGGCTAGAG 58.811 52.381 7.96 0.00 0.00 2.43
4401 5973 2.337359 ACAAGTTGGGGTAGGCTAGA 57.663 50.000 7.96 0.00 0.00 2.43
4402 5974 3.081804 CAAACAAGTTGGGGTAGGCTAG 58.918 50.000 7.96 0.00 33.18 3.42
4403 5975 3.149005 CAAACAAGTTGGGGTAGGCTA 57.851 47.619 7.96 0.00 33.18 3.93
4404 5976 1.995376 CAAACAAGTTGGGGTAGGCT 58.005 50.000 7.96 0.00 33.18 4.58
4413 5985 3.947834 AGACTTCAGTCCCAAACAAGTTG 59.052 43.478 0.00 0.00 45.85 3.16
4414 5986 4.236527 AGACTTCAGTCCCAAACAAGTT 57.763 40.909 3.20 0.00 45.85 2.66
4415 5987 3.933861 AGACTTCAGTCCCAAACAAGT 57.066 42.857 3.20 0.00 45.85 3.16
4416 5988 4.399303 ACAAAGACTTCAGTCCCAAACAAG 59.601 41.667 3.20 0.00 45.85 3.16
4417 5989 4.340617 ACAAAGACTTCAGTCCCAAACAA 58.659 39.130 3.20 0.00 45.85 2.83
4418 5990 3.963129 ACAAAGACTTCAGTCCCAAACA 58.037 40.909 3.20 0.00 45.85 2.83
4419 5991 4.157840 ACAACAAAGACTTCAGTCCCAAAC 59.842 41.667 3.20 0.00 45.85 2.93
4420 5992 4.340617 ACAACAAAGACTTCAGTCCCAAA 58.659 39.130 3.20 0.00 45.85 3.28
4421 5993 3.963129 ACAACAAAGACTTCAGTCCCAA 58.037 40.909 3.20 0.00 45.85 4.12
4422 5994 3.644966 ACAACAAAGACTTCAGTCCCA 57.355 42.857 3.20 0.00 45.85 4.37
4423 5995 3.694566 ACAACAACAAAGACTTCAGTCCC 59.305 43.478 3.20 0.00 45.85 4.46
4424 5996 4.965119 ACAACAACAAAGACTTCAGTCC 57.035 40.909 3.20 0.00 45.85 3.85
4425 5997 5.699839 ACAACAACAACAAAGACTTCAGTC 58.300 37.500 0.00 0.00 45.08 3.51
4426 5998 5.705609 ACAACAACAACAAAGACTTCAGT 57.294 34.783 0.00 0.00 0.00 3.41
4427 5999 5.920273 ACAACAACAACAACAAAGACTTCAG 59.080 36.000 0.00 0.00 0.00 3.02
4428 6000 5.837437 ACAACAACAACAACAAAGACTTCA 58.163 33.333 0.00 0.00 0.00 3.02
4429 6001 6.200097 ACAACAACAACAACAACAAAGACTTC 59.800 34.615 0.00 0.00 0.00 3.01
4430 6002 6.045955 ACAACAACAACAACAACAAAGACTT 58.954 32.000 0.00 0.00 0.00 3.01
4431 6003 5.596845 ACAACAACAACAACAACAAAGACT 58.403 33.333 0.00 0.00 0.00 3.24
4432 6004 5.898630 ACAACAACAACAACAACAAAGAC 57.101 34.783 0.00 0.00 0.00 3.01
4433 6005 5.812642 ACAACAACAACAACAACAACAAAGA 59.187 32.000 0.00 0.00 0.00 2.52
4434 6006 6.042144 ACAACAACAACAACAACAACAAAG 57.958 33.333 0.00 0.00 0.00 2.77
4435 6007 6.092122 TCAACAACAACAACAACAACAACAAA 59.908 30.769 0.00 0.00 0.00 2.83
4436 6008 5.580691 TCAACAACAACAACAACAACAACAA 59.419 32.000 0.00 0.00 0.00 2.83
4437 6009 5.109210 TCAACAACAACAACAACAACAACA 58.891 33.333 0.00 0.00 0.00 3.33
4438 6010 5.460419 TCTCAACAACAACAACAACAACAAC 59.540 36.000 0.00 0.00 0.00 3.32
4439 6011 5.592054 TCTCAACAACAACAACAACAACAA 58.408 33.333 0.00 0.00 0.00 2.83
4440 6012 5.188327 TCTCAACAACAACAACAACAACA 57.812 34.783 0.00 0.00 0.00 3.33
4441 6013 5.918011 TCTTCTCAACAACAACAACAACAAC 59.082 36.000 0.00 0.00 0.00 3.32
4442 6014 6.078202 TCTTCTCAACAACAACAACAACAA 57.922 33.333 0.00 0.00 0.00 2.83
4443 6015 5.240623 ACTCTTCTCAACAACAACAACAACA 59.759 36.000 0.00 0.00 0.00 3.33
4444 6016 5.699839 ACTCTTCTCAACAACAACAACAAC 58.300 37.500 0.00 0.00 0.00 3.32
4445 6017 5.957842 ACTCTTCTCAACAACAACAACAA 57.042 34.783 0.00 0.00 0.00 2.83
4446 6018 5.390461 CGAACTCTTCTCAACAACAACAACA 60.390 40.000 0.00 0.00 0.00 3.33
4447 6019 5.022021 CGAACTCTTCTCAACAACAACAAC 58.978 41.667 0.00 0.00 0.00 3.32
4448 6020 4.932799 TCGAACTCTTCTCAACAACAACAA 59.067 37.500 0.00 0.00 0.00 2.83
4449 6021 4.500127 TCGAACTCTTCTCAACAACAACA 58.500 39.130 0.00 0.00 0.00 3.33
4450 6022 4.804139 TCTCGAACTCTTCTCAACAACAAC 59.196 41.667 0.00 0.00 0.00 3.32
4451 6023 5.006153 TCTCGAACTCTTCTCAACAACAA 57.994 39.130 0.00 0.00 0.00 2.83
4452 6024 4.649088 TCTCGAACTCTTCTCAACAACA 57.351 40.909 0.00 0.00 0.00 3.33
4453 6025 5.223382 TCATCTCGAACTCTTCTCAACAAC 58.777 41.667 0.00 0.00 0.00 3.32
4454 6026 5.453567 TCATCTCGAACTCTTCTCAACAA 57.546 39.130 0.00 0.00 0.00 2.83
4459 6031 9.176181 GTAATGTTATCATCTCGAACTCTTCTC 57.824 37.037 0.00 0.00 32.56 2.87
4708 6283 2.229792 TGAACAACCATGAGTCCAAGC 58.770 47.619 0.00 0.00 0.00 4.01
4872 6447 1.172180 TTTTGGTCCTGCTGCCTTCG 61.172 55.000 0.00 0.00 0.00 3.79
4920 6515 1.227674 GGCGTCCCTCATAAGGCTG 60.228 63.158 0.00 0.00 41.85 4.85
4967 6563 8.753497 AAAACAAAACAAGACTAGGAGAAGAT 57.247 30.769 0.00 0.00 0.00 2.40
5032 6628 3.814842 TCTGAACTCGCATCAAAATGTGT 59.185 39.130 0.00 0.00 42.75 3.72
5033 6629 4.408993 TCTGAACTCGCATCAAAATGTG 57.591 40.909 0.00 0.00 43.41 3.21
5107 6705 5.077134 AGCTTTCCTCCAAAATGCATAAC 57.923 39.130 0.00 0.00 0.00 1.89
5221 6820 3.756117 AGAGAAGCAAACAAGTTAGGGG 58.244 45.455 0.00 0.00 0.00 4.79
5297 6896 6.048509 CCCAAAAAGCAAAGATAACAACACT 58.951 36.000 0.00 0.00 0.00 3.55
5379 6984 6.547880 TCAAACAGCAAAATAGGTAGGAACAA 59.452 34.615 0.00 0.00 0.00 2.83
5775 7385 2.696707 ACGTACCAAGACAGTTCCAAGA 59.303 45.455 0.00 0.00 0.00 3.02
5817 7427 5.520288 CACAAGAACCATAGTTATCGAGTGG 59.480 44.000 0.00 0.00 35.94 4.00
5911 7521 9.663904 CACAGAAAATGGATTATGTTATTACCG 57.336 33.333 0.00 0.00 0.00 4.02
5928 7538 6.458210 CAACATTAAGAAGGGCACAGAAAAT 58.542 36.000 0.00 0.00 0.00 1.82
5958 7568 4.037222 TCATGGTATCCTCAGCTAAACCA 58.963 43.478 0.00 0.00 40.99 3.67
5990 7600 1.971357 CATTAGGGGATACGTCTGGCT 59.029 52.381 0.00 0.00 37.60 4.75
6112 7722 9.467258 CATGAATCTTCAAGTTTTTACACACAT 57.533 29.630 0.00 0.00 41.13 3.21
6143 7753 9.376075 CGATAGACCTGCATTAGATGAAATAAT 57.624 33.333 0.00 0.00 39.76 1.28
6318 7976 6.112058 TGGCAAAAGCAGTTCAAGTAAATTT 58.888 32.000 0.00 0.00 0.00 1.82
6341 8002 3.695060 AGCTTTCTCATGAATGGAGCTTG 59.305 43.478 13.65 0.00 39.49 4.01
6348 8009 5.609423 AGGCTACTAGCTTTCTCATGAATG 58.391 41.667 7.99 0.00 41.99 2.67
6433 8101 3.319122 AGAGGGCAGAAATGTGTCAAAAC 59.681 43.478 0.00 0.00 0.00 2.43
6461 8129 3.872696 TGACAAGATACGATGCCAATGT 58.127 40.909 0.00 0.00 0.00 2.71
6547 8215 4.513442 CGGTCAAATATCCCACTTTGAGA 58.487 43.478 0.00 0.00 40.86 3.27
6784 8453 0.106819 GATTGTGATGGAGGCTGGCT 60.107 55.000 2.24 2.24 0.00 4.75
7007 8676 3.822735 ACCTGTCACAGATTCCATTTGTG 59.177 43.478 6.30 1.81 42.65 3.33
7303 8972 4.963276 TGCATCTGTTATAAAGGCACAC 57.037 40.909 0.00 0.00 0.00 3.82
7387 9058 6.209391 CCCTACTTGGAATGACAGTTTTTGAT 59.791 38.462 0.00 0.00 38.35 2.57
7400 9071 5.195940 CACATTGTCATCCCTACTTGGAAT 58.804 41.667 0.00 0.00 38.10 3.01
7471 9143 3.838903 AGTGAGTCGGAATAGGAGGTTTT 59.161 43.478 0.00 0.00 0.00 2.43
7478 9150 6.159988 GGATATTGAAGTGAGTCGGAATAGG 58.840 44.000 0.00 0.00 0.00 2.57
7597 9269 8.043710 AGATTAGTCCAACTTACAGAGATTTGG 58.956 37.037 0.00 0.00 38.48 3.28
7606 9278 7.311092 TCCTTTGAGATTAGTCCAACTTACA 57.689 36.000 0.00 0.00 0.00 2.41
7648 9320 1.481056 CGGCTATTAGGGTGAGGGGG 61.481 65.000 0.00 0.00 0.00 5.40
7753 9466 2.287909 GGAGTGCTCTAGCTATTGACGG 60.288 54.545 3.26 0.00 42.66 4.79
7754 9467 2.621055 AGGAGTGCTCTAGCTATTGACG 59.379 50.000 3.26 0.00 42.66 4.35
7787 9560 0.469331 ACCGTTCCCTCTGTCTCACA 60.469 55.000 0.00 0.00 0.00 3.58
7882 9655 9.852091 AAAAAGCAAAAATGAAAGCAAAATACA 57.148 22.222 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.