Multiple sequence alignment - TraesCS1B01G198600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G198600 chr1B 100.000 2517 0 0 1 2517 356506466 356503950 0.000000e+00 4649
1 TraesCS1B01G198600 chr1A 89.204 1269 131 6 415 1682 329980507 329981770 0.000000e+00 1580
2 TraesCS1B01G198600 chr1A 87.101 721 85 7 1799 2517 329982008 329982722 0.000000e+00 809
3 TraesCS1B01G198600 chr1A 93.095 420 22 6 1 417 329607262 329607677 2.140000e-170 608
4 TraesCS1B01G198600 chr1A 93.258 89 6 0 1817 1905 329981915 329982003 5.650000e-27 132
5 TraesCS1B01G198600 chr1D 86.619 1390 155 19 373 1755 256774401 256775766 0.000000e+00 1507
6 TraesCS1B01G198600 chr1D 85.917 774 89 8 1757 2517 256775865 256776631 0.000000e+00 808
7 TraesCS1B01G198600 chr3D 79.794 777 130 22 902 1658 496936808 496937577 7.920000e-150 540
8 TraesCS1B01G198600 chr3D 79.399 699 123 8 789 1474 186616541 186617231 8.150000e-130 473
9 TraesCS1B01G198600 chr3A 78.255 791 132 29 902 1658 637670916 637670132 2.930000e-129 472
10 TraesCS1B01G198600 chr3A 81.188 404 65 9 2029 2429 476181243 476180848 5.230000e-82 315
11 TraesCS1B01G198600 chr3B 79.970 664 108 18 1069 1719 656564173 656564824 1.360000e-127 466
12 TraesCS1B01G198600 chr3B 74.951 507 99 15 1249 1753 665874510 665874030 9.130000e-50 207
13 TraesCS1B01G198600 chr3B 73.658 596 114 30 709 1286 650843697 650844267 9.190000e-45 191
14 TraesCS1B01G198600 chr6B 78.119 489 85 15 1943 2429 542385158 542385626 8.810000e-75 291
15 TraesCS1B01G198600 chr6B 71.898 669 146 33 1025 1669 93981703 93982353 3.350000e-34 156
16 TraesCS1B01G198600 chr6B 73.121 439 101 15 997 1429 636474782 636475209 9.390000e-30 141
17 TraesCS1B01G198600 chr7B 73.063 568 124 19 1112 1658 469802447 469801888 9.260000e-40 174
18 TraesCS1B01G198600 chrUn 71.791 709 155 34 988 1669 18914823 18914133 2.590000e-35 159
19 TraesCS1B01G198600 chr5A 74.648 355 84 5 1001 1353 663175137 663175487 4.340000e-33 152
20 TraesCS1B01G198600 chr5B 80.114 176 18 9 1582 1756 278476455 278476614 5.690000e-22 115
21 TraesCS1B01G198600 chr2B 92.000 75 5 1 1584 1658 387259057 387259130 1.230000e-18 104


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G198600 chr1B 356503950 356506466 2516 True 4649.000000 4649 100.000000 1 2517 1 chr1B.!!$R1 2516
1 TraesCS1B01G198600 chr1A 329980507 329982722 2215 False 840.333333 1580 89.854333 415 2517 3 chr1A.!!$F2 2102
2 TraesCS1B01G198600 chr1D 256774401 256776631 2230 False 1157.500000 1507 86.268000 373 2517 2 chr1D.!!$F1 2144
3 TraesCS1B01G198600 chr3D 496936808 496937577 769 False 540.000000 540 79.794000 902 1658 1 chr3D.!!$F2 756
4 TraesCS1B01G198600 chr3D 186616541 186617231 690 False 473.000000 473 79.399000 789 1474 1 chr3D.!!$F1 685
5 TraesCS1B01G198600 chr3A 637670132 637670916 784 True 472.000000 472 78.255000 902 1658 1 chr3A.!!$R2 756
6 TraesCS1B01G198600 chr3B 656564173 656564824 651 False 466.000000 466 79.970000 1069 1719 1 chr3B.!!$F2 650

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
261 262 0.030638 ACAAACACATCGCTTGCCAC 59.969 50.0 0.0 0.0 0.0 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1970 2219 0.249489 AGACATAATCGAGTGCGCCC 60.249 55.0 4.18 0.0 37.46 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 9.801873 TTTTCCTATGAAATATAGTGCAAAAGC 57.198 29.630 0.00 0.00 40.08 3.51
33 34 8.518430 TTCCTATGAAATATAGTGCAAAAGCA 57.482 30.769 0.00 0.00 0.00 3.91
34 35 8.696043 TCCTATGAAATATAGTGCAAAAGCAT 57.304 30.769 0.00 0.00 0.00 3.79
35 36 8.786898 TCCTATGAAATATAGTGCAAAAGCATC 58.213 33.333 0.00 0.00 0.00 3.91
36 37 8.790718 CCTATGAAATATAGTGCAAAAGCATCT 58.209 33.333 0.00 0.00 0.00 2.90
82 83 9.817809 ATTCAATCTCATGAATCAAAAGAATGG 57.182 29.630 11.10 2.70 44.64 3.16
83 84 7.262772 TCAATCTCATGAATCAAAAGAATGGC 58.737 34.615 11.10 0.00 0.00 4.40
84 85 6.785337 ATCTCATGAATCAAAAGAATGGCA 57.215 33.333 0.00 0.00 0.00 4.92
85 86 6.785337 TCTCATGAATCAAAAGAATGGCAT 57.215 33.333 0.00 0.00 0.00 4.40
86 87 7.885009 TCTCATGAATCAAAAGAATGGCATA 57.115 32.000 0.00 0.00 0.00 3.14
87 88 7.937649 TCTCATGAATCAAAAGAATGGCATAG 58.062 34.615 0.00 0.00 0.00 2.23
88 89 7.776500 TCTCATGAATCAAAAGAATGGCATAGA 59.224 33.333 0.00 0.00 0.00 1.98
89 90 8.473358 TCATGAATCAAAAGAATGGCATAGAT 57.527 30.769 0.00 0.00 0.00 1.98
90 91 8.920174 TCATGAATCAAAAGAATGGCATAGATT 58.080 29.630 0.00 4.39 0.00 2.40
154 155 9.759473 AAAATCTTGAATAAAAGAGATCCTCCA 57.241 29.630 0.00 0.00 39.47 3.86
155 156 9.933240 AAATCTTGAATAAAAGAGATCCTCCAT 57.067 29.630 0.00 0.00 39.47 3.41
158 159 8.654997 TCTTGAATAAAAGAGATCCTCCATAGG 58.345 37.037 0.00 0.00 36.67 2.57
168 169 1.300233 CTCCATAGGAAGCCGACGC 60.300 63.158 0.00 0.00 0.00 5.19
169 170 2.016393 CTCCATAGGAAGCCGACGCA 62.016 60.000 0.00 0.00 37.52 5.24
170 171 1.069765 CCATAGGAAGCCGACGCAT 59.930 57.895 0.00 0.00 37.52 4.73
171 172 0.317160 CCATAGGAAGCCGACGCATA 59.683 55.000 0.00 0.00 37.52 3.14
172 173 1.419374 CATAGGAAGCCGACGCATAC 58.581 55.000 0.00 0.00 37.52 2.39
174 175 1.096967 TAGGAAGCCGACGCATACGA 61.097 55.000 0.00 0.00 43.93 3.43
175 176 1.944676 GGAAGCCGACGCATACGAG 60.945 63.158 0.00 0.00 43.93 4.18
176 177 2.577785 GAAGCCGACGCATACGAGC 61.578 63.158 0.00 0.00 43.93 5.03
177 178 3.350909 AAGCCGACGCATACGAGCA 62.351 57.895 0.00 0.00 43.93 4.26
178 179 3.617538 GCCGACGCATACGAGCAC 61.618 66.667 0.00 0.00 43.93 4.40
179 180 2.954868 CCGACGCATACGAGCACC 60.955 66.667 0.00 0.00 43.93 5.01
180 181 2.102357 CGACGCATACGAGCACCT 59.898 61.111 0.00 0.00 43.93 4.00
181 182 1.939785 CGACGCATACGAGCACCTC 60.940 63.158 0.00 0.00 43.93 3.85
182 183 1.433879 GACGCATACGAGCACCTCT 59.566 57.895 0.00 0.00 43.93 3.69
183 184 0.867753 GACGCATACGAGCACCTCTG 60.868 60.000 0.00 0.00 43.93 3.35
184 185 1.313091 ACGCATACGAGCACCTCTGA 61.313 55.000 0.00 0.00 43.93 3.27
185 186 0.593518 CGCATACGAGCACCTCTGAG 60.594 60.000 0.00 0.00 43.93 3.35
186 187 0.741326 GCATACGAGCACCTCTGAGA 59.259 55.000 6.17 0.00 0.00 3.27
187 188 1.135139 GCATACGAGCACCTCTGAGAA 59.865 52.381 6.17 0.00 0.00 2.87
188 189 2.417379 GCATACGAGCACCTCTGAGAAA 60.417 50.000 6.17 0.00 0.00 2.52
189 190 3.182967 CATACGAGCACCTCTGAGAAAC 58.817 50.000 6.17 0.00 0.00 2.78
190 191 1.333177 ACGAGCACCTCTGAGAAACT 58.667 50.000 6.17 0.00 0.00 2.66
191 192 2.515854 ACGAGCACCTCTGAGAAACTA 58.484 47.619 6.17 0.00 0.00 2.24
192 193 2.490115 ACGAGCACCTCTGAGAAACTAG 59.510 50.000 6.17 3.25 0.00 2.57
193 194 2.159310 CGAGCACCTCTGAGAAACTAGG 60.159 54.545 6.17 0.00 35.14 3.02
194 195 1.552792 AGCACCTCTGAGAAACTAGGC 59.447 52.381 6.17 0.00 31.98 3.93
195 196 1.552792 GCACCTCTGAGAAACTAGGCT 59.447 52.381 6.17 0.00 31.98 4.58
196 197 2.676463 GCACCTCTGAGAAACTAGGCTG 60.676 54.545 6.17 0.00 31.98 4.85
197 198 2.828520 CACCTCTGAGAAACTAGGCTGA 59.171 50.000 6.17 0.00 31.98 4.26
198 199 3.096092 ACCTCTGAGAAACTAGGCTGAG 58.904 50.000 6.17 0.00 31.98 3.35
199 200 3.245443 ACCTCTGAGAAACTAGGCTGAGA 60.245 47.826 6.17 0.00 31.98 3.27
200 201 3.766591 CCTCTGAGAAACTAGGCTGAGAA 59.233 47.826 6.17 0.00 0.00 2.87
201 202 4.221703 CCTCTGAGAAACTAGGCTGAGAAA 59.778 45.833 6.17 0.00 0.00 2.52
202 203 5.104982 CCTCTGAGAAACTAGGCTGAGAAAT 60.105 44.000 6.17 0.00 0.00 2.17
203 204 5.971763 TCTGAGAAACTAGGCTGAGAAATC 58.028 41.667 0.00 0.00 0.00 2.17
204 205 5.719085 TCTGAGAAACTAGGCTGAGAAATCT 59.281 40.000 0.00 0.00 0.00 2.40
205 206 6.212388 TCTGAGAAACTAGGCTGAGAAATCTT 59.788 38.462 0.00 0.00 0.00 2.40
206 207 6.169094 TGAGAAACTAGGCTGAGAAATCTTG 58.831 40.000 0.00 0.00 0.00 3.02
207 208 6.014242 TGAGAAACTAGGCTGAGAAATCTTGA 60.014 38.462 0.00 0.00 0.00 3.02
208 209 6.405538 AGAAACTAGGCTGAGAAATCTTGAG 58.594 40.000 0.00 0.00 0.00 3.02
209 210 6.212388 AGAAACTAGGCTGAGAAATCTTGAGA 59.788 38.462 0.00 0.00 0.00 3.27
210 211 6.558488 AACTAGGCTGAGAAATCTTGAGAT 57.442 37.500 0.00 0.00 36.07 2.75
211 212 6.558488 ACTAGGCTGAGAAATCTTGAGATT 57.442 37.500 0.00 0.44 45.91 2.40
212 213 7.667575 ACTAGGCTGAGAAATCTTGAGATTA 57.332 36.000 6.66 0.00 43.41 1.75
213 214 8.083828 ACTAGGCTGAGAAATCTTGAGATTAA 57.916 34.615 6.66 0.00 43.41 1.40
214 215 7.984617 ACTAGGCTGAGAAATCTTGAGATTAAC 59.015 37.037 6.66 5.11 43.41 2.01
215 216 6.715280 AGGCTGAGAAATCTTGAGATTAACA 58.285 36.000 6.66 6.86 43.41 2.41
216 217 7.170965 AGGCTGAGAAATCTTGAGATTAACAA 58.829 34.615 6.66 0.00 43.41 2.83
217 218 7.667219 AGGCTGAGAAATCTTGAGATTAACAAA 59.333 33.333 6.66 0.00 43.41 2.83
218 219 7.967303 GGCTGAGAAATCTTGAGATTAACAAAG 59.033 37.037 6.66 7.23 43.41 2.77
219 220 7.484324 GCTGAGAAATCTTGAGATTAACAAAGC 59.516 37.037 6.66 11.59 43.41 3.51
220 221 8.627208 TGAGAAATCTTGAGATTAACAAAGCT 57.373 30.769 6.66 0.00 43.41 3.74
221 222 9.725019 TGAGAAATCTTGAGATTAACAAAGCTA 57.275 29.630 6.66 0.00 43.41 3.32
222 223 9.980780 GAGAAATCTTGAGATTAACAAAGCTAC 57.019 33.333 6.66 0.00 43.41 3.58
223 224 8.951243 AGAAATCTTGAGATTAACAAAGCTACC 58.049 33.333 6.66 0.00 43.41 3.18
224 225 8.635765 AAATCTTGAGATTAACAAAGCTACCA 57.364 30.769 6.66 0.00 43.41 3.25
225 226 7.617041 ATCTTGAGATTAACAAAGCTACCAC 57.383 36.000 0.00 0.00 0.00 4.16
226 227 6.530120 TCTTGAGATTAACAAAGCTACCACA 58.470 36.000 0.00 0.00 0.00 4.17
227 228 7.168219 TCTTGAGATTAACAAAGCTACCACAT 58.832 34.615 0.00 0.00 0.00 3.21
228 229 6.741992 TGAGATTAACAAAGCTACCACATG 57.258 37.500 0.00 0.00 0.00 3.21
229 230 6.237901 TGAGATTAACAAAGCTACCACATGT 58.762 36.000 0.00 0.00 0.00 3.21
230 231 6.149308 TGAGATTAACAAAGCTACCACATGTG 59.851 38.462 19.31 19.31 0.00 3.21
231 232 4.497473 TTAACAAAGCTACCACATGTGC 57.503 40.909 20.81 9.10 0.00 4.57
232 233 2.276732 ACAAAGCTACCACATGTGCT 57.723 45.000 20.81 11.46 34.27 4.40
233 234 2.586425 ACAAAGCTACCACATGTGCTT 58.414 42.857 20.81 16.84 40.59 3.91
234 235 2.554032 ACAAAGCTACCACATGTGCTTC 59.446 45.455 20.81 8.66 39.08 3.86
235 236 1.442769 AAGCTACCACATGTGCTTCG 58.557 50.000 20.81 9.22 36.97 3.79
236 237 0.321671 AGCTACCACATGTGCTTCGT 59.678 50.000 20.81 14.62 30.41 3.85
237 238 1.156736 GCTACCACATGTGCTTCGTT 58.843 50.000 20.81 2.38 0.00 3.85
238 239 1.135972 GCTACCACATGTGCTTCGTTG 60.136 52.381 20.81 13.81 0.00 4.10
239 240 2.143122 CTACCACATGTGCTTCGTTGT 58.857 47.619 20.81 12.86 0.00 3.32
240 241 0.944386 ACCACATGTGCTTCGTTGTC 59.056 50.000 20.81 0.00 0.00 3.18
241 242 0.943673 CCACATGTGCTTCGTTGTCA 59.056 50.000 20.81 0.00 0.00 3.58
242 243 1.333308 CCACATGTGCTTCGTTGTCAA 59.667 47.619 20.81 0.00 0.00 3.18
243 244 2.375110 CACATGTGCTTCGTTGTCAAC 58.625 47.619 13.94 5.58 0.00 3.18
244 245 2.013400 ACATGTGCTTCGTTGTCAACA 58.987 42.857 15.79 0.63 0.00 3.33
245 246 2.421775 ACATGTGCTTCGTTGTCAACAA 59.578 40.909 15.79 8.11 0.00 2.83
246 247 3.119673 ACATGTGCTTCGTTGTCAACAAA 60.120 39.130 15.79 2.65 37.63 2.83
247 248 2.857618 TGTGCTTCGTTGTCAACAAAC 58.142 42.857 15.79 6.44 37.63 2.93
248 249 2.226674 TGTGCTTCGTTGTCAACAAACA 59.773 40.909 15.79 8.65 37.63 2.83
249 250 2.592459 GTGCTTCGTTGTCAACAAACAC 59.408 45.455 15.79 14.42 37.63 3.32
250 251 2.226674 TGCTTCGTTGTCAACAAACACA 59.773 40.909 15.79 4.29 37.63 3.72
251 252 3.119673 TGCTTCGTTGTCAACAAACACAT 60.120 39.130 15.79 0.00 37.63 3.21
252 253 3.482110 GCTTCGTTGTCAACAAACACATC 59.518 43.478 15.79 0.00 37.63 3.06
253 254 3.311788 TCGTTGTCAACAAACACATCG 57.688 42.857 15.79 0.00 37.63 3.84
254 255 1.772966 CGTTGTCAACAAACACATCGC 59.227 47.619 15.79 0.00 37.63 4.58
255 256 2.538737 CGTTGTCAACAAACACATCGCT 60.539 45.455 15.79 0.00 37.63 4.93
256 257 3.434637 GTTGTCAACAAACACATCGCTT 58.565 40.909 10.93 0.00 37.63 4.68
257 258 3.063670 TGTCAACAAACACATCGCTTG 57.936 42.857 0.00 0.00 0.00 4.01
258 259 1.780860 GTCAACAAACACATCGCTTGC 59.219 47.619 0.00 0.00 0.00 4.01
259 260 1.130955 CAACAAACACATCGCTTGCC 58.869 50.000 0.00 0.00 0.00 4.52
260 261 0.743688 AACAAACACATCGCTTGCCA 59.256 45.000 0.00 0.00 0.00 4.92
261 262 0.030638 ACAAACACATCGCTTGCCAC 59.969 50.000 0.00 0.00 0.00 5.01
262 263 0.311790 CAAACACATCGCTTGCCACT 59.688 50.000 0.00 0.00 0.00 4.00
263 264 0.311790 AAACACATCGCTTGCCACTG 59.688 50.000 0.00 0.00 0.00 3.66
264 265 0.534877 AACACATCGCTTGCCACTGA 60.535 50.000 0.00 0.00 0.00 3.41
265 266 0.534877 ACACATCGCTTGCCACTGAA 60.535 50.000 0.00 0.00 0.00 3.02
266 267 0.592637 CACATCGCTTGCCACTGAAA 59.407 50.000 0.00 0.00 0.00 2.69
267 268 0.877071 ACATCGCTTGCCACTGAAAG 59.123 50.000 0.00 0.00 42.29 2.62
317 318 5.735766 AGATCTAGAAAAGTGTAAGCACCC 58.264 41.667 0.00 0.00 46.35 4.61
318 319 4.967084 TCTAGAAAAGTGTAAGCACCCA 57.033 40.909 0.00 0.00 46.35 4.51
319 320 5.499004 TCTAGAAAAGTGTAAGCACCCAT 57.501 39.130 0.00 0.00 46.35 4.00
320 321 6.614694 TCTAGAAAAGTGTAAGCACCCATA 57.385 37.500 0.00 0.00 46.35 2.74
321 322 7.195374 TCTAGAAAAGTGTAAGCACCCATAT 57.805 36.000 0.00 0.00 46.35 1.78
322 323 7.272978 TCTAGAAAAGTGTAAGCACCCATATC 58.727 38.462 0.00 0.00 46.35 1.63
323 324 4.876107 AGAAAAGTGTAAGCACCCATATCG 59.124 41.667 0.00 0.00 46.35 2.92
324 325 4.481368 AAAGTGTAAGCACCCATATCGA 57.519 40.909 0.00 0.00 46.35 3.59
325 326 3.735237 AGTGTAAGCACCCATATCGAG 57.265 47.619 0.00 0.00 46.35 4.04
326 327 3.031736 AGTGTAAGCACCCATATCGAGT 58.968 45.455 0.00 0.00 46.35 4.18
327 328 4.212716 AGTGTAAGCACCCATATCGAGTA 58.787 43.478 0.00 0.00 46.35 2.59
328 329 4.833380 AGTGTAAGCACCCATATCGAGTAT 59.167 41.667 0.00 0.00 46.35 2.12
329 330 6.008331 AGTGTAAGCACCCATATCGAGTATA 58.992 40.000 0.00 0.00 46.35 1.47
330 331 6.492429 AGTGTAAGCACCCATATCGAGTATAA 59.508 38.462 0.00 0.00 46.35 0.98
331 332 7.014905 AGTGTAAGCACCCATATCGAGTATAAA 59.985 37.037 0.00 0.00 46.35 1.40
332 333 7.654520 GTGTAAGCACCCATATCGAGTATAAAA 59.345 37.037 0.00 0.00 39.61 1.52
333 334 7.654520 TGTAAGCACCCATATCGAGTATAAAAC 59.345 37.037 0.00 0.00 0.00 2.43
334 335 5.548406 AGCACCCATATCGAGTATAAAACC 58.452 41.667 0.00 0.00 0.00 3.27
335 336 5.307196 AGCACCCATATCGAGTATAAAACCT 59.693 40.000 0.00 0.00 0.00 3.50
336 337 5.408604 GCACCCATATCGAGTATAAAACCTG 59.591 44.000 0.00 0.00 0.00 4.00
337 338 5.408604 CACCCATATCGAGTATAAAACCTGC 59.591 44.000 0.00 0.00 0.00 4.85
338 339 5.071250 ACCCATATCGAGTATAAAACCTGCA 59.929 40.000 0.00 0.00 0.00 4.41
339 340 6.173339 CCCATATCGAGTATAAAACCTGCAT 58.827 40.000 0.00 0.00 0.00 3.96
340 341 6.313905 CCCATATCGAGTATAAAACCTGCATC 59.686 42.308 0.00 0.00 0.00 3.91
341 342 6.313905 CCATATCGAGTATAAAACCTGCATCC 59.686 42.308 0.00 0.00 0.00 3.51
342 343 5.552870 ATCGAGTATAAAACCTGCATCCT 57.447 39.130 0.00 0.00 0.00 3.24
343 344 4.945246 TCGAGTATAAAACCTGCATCCTC 58.055 43.478 0.00 0.00 0.00 3.71
344 345 4.404394 TCGAGTATAAAACCTGCATCCTCA 59.596 41.667 0.00 0.00 0.00 3.86
345 346 4.747108 CGAGTATAAAACCTGCATCCTCAG 59.253 45.833 0.00 0.00 0.00 3.35
350 351 2.593978 CCTGCATCCTCAGGTGGG 59.406 66.667 0.00 0.00 46.59 4.61
351 352 2.124403 CTGCATCCTCAGGTGGGC 60.124 66.667 0.00 0.00 0.00 5.36
352 353 2.934932 TGCATCCTCAGGTGGGCA 60.935 61.111 3.07 3.07 0.00 5.36
353 354 2.124403 GCATCCTCAGGTGGGCAG 60.124 66.667 0.00 0.00 0.00 4.85
354 355 2.673200 GCATCCTCAGGTGGGCAGA 61.673 63.158 0.00 0.00 0.00 4.26
355 356 1.992519 GCATCCTCAGGTGGGCAGAT 61.993 60.000 0.00 0.00 0.00 2.90
356 357 0.549950 CATCCTCAGGTGGGCAGATT 59.450 55.000 0.00 0.00 0.00 2.40
357 358 0.842635 ATCCTCAGGTGGGCAGATTC 59.157 55.000 0.00 0.00 0.00 2.52
358 359 1.225704 CCTCAGGTGGGCAGATTCC 59.774 63.158 0.00 0.00 0.00 3.01
359 360 1.565390 CCTCAGGTGGGCAGATTCCA 61.565 60.000 0.00 0.00 0.00 3.53
360 361 0.329261 CTCAGGTGGGCAGATTCCAA 59.671 55.000 0.00 0.00 35.86 3.53
361 362 0.329261 TCAGGTGGGCAGATTCCAAG 59.671 55.000 0.00 0.00 35.86 3.61
362 363 0.682209 CAGGTGGGCAGATTCCAAGG 60.682 60.000 0.00 0.00 35.86 3.61
363 364 1.142688 AGGTGGGCAGATTCCAAGGT 61.143 55.000 0.00 0.00 35.86 3.50
364 365 0.623723 GGTGGGCAGATTCCAAGGTA 59.376 55.000 0.00 0.00 35.86 3.08
365 366 1.005450 GGTGGGCAGATTCCAAGGTAA 59.995 52.381 0.00 0.00 35.86 2.85
366 367 2.556559 GGTGGGCAGATTCCAAGGTAAA 60.557 50.000 0.00 0.00 35.86 2.01
367 368 3.161866 GTGGGCAGATTCCAAGGTAAAA 58.838 45.455 0.00 0.00 35.86 1.52
368 369 3.193479 GTGGGCAGATTCCAAGGTAAAAG 59.807 47.826 0.00 0.00 35.86 2.27
369 370 3.075283 TGGGCAGATTCCAAGGTAAAAGA 59.925 43.478 0.00 0.00 0.00 2.52
370 371 3.444034 GGGCAGATTCCAAGGTAAAAGAC 59.556 47.826 0.00 0.00 0.00 3.01
393 394 5.221581 ACCTACGTGCATTTATAGGGGTTAG 60.222 44.000 15.74 0.00 38.86 2.34
394 395 4.081322 ACGTGCATTTATAGGGGTTAGG 57.919 45.455 0.00 0.00 0.00 2.69
395 396 3.181448 ACGTGCATTTATAGGGGTTAGGG 60.181 47.826 0.00 0.00 0.00 3.53
396 397 3.154710 GTGCATTTATAGGGGTTAGGGC 58.845 50.000 0.00 0.00 0.00 5.19
397 398 2.786445 TGCATTTATAGGGGTTAGGGCA 59.214 45.455 0.00 0.00 0.00 5.36
408 409 1.548719 GGTTAGGGCATGTTTGGTTCC 59.451 52.381 0.00 0.00 0.00 3.62
412 413 1.133199 AGGGCATGTTTGGTTCCTGAA 60.133 47.619 0.00 0.00 0.00 3.02
457 459 2.493278 ACATGCCTAGTGGATGCAAAAC 59.507 45.455 11.00 0.00 38.69 2.43
514 516 3.058224 ACTCGCATGAAACTTAAAGCACC 60.058 43.478 0.00 0.00 0.00 5.01
516 518 4.320023 TCGCATGAAACTTAAAGCACCTA 58.680 39.130 0.00 0.00 0.00 3.08
554 556 6.315393 GCTAGGAAAACTCGAATCAACCATTA 59.685 38.462 0.00 0.00 0.00 1.90
555 557 7.012421 GCTAGGAAAACTCGAATCAACCATTAT 59.988 37.037 0.00 0.00 0.00 1.28
681 684 0.721718 GCAAAATCGGTCTCACCTCG 59.278 55.000 0.00 0.00 35.66 4.63
692 695 3.391049 GTCTCACCTCGCTTTTACTTGT 58.609 45.455 0.00 0.00 0.00 3.16
737 740 1.192146 AGCCTTAGTTCTCGGCACCA 61.192 55.000 12.98 0.00 46.14 4.17
739 742 1.679032 GCCTTAGTTCTCGGCACCAAT 60.679 52.381 0.00 0.00 43.25 3.16
755 758 1.812571 CCAATGGCACCAGTGACTTAC 59.187 52.381 18.18 0.00 43.70 2.34
773 776 6.492429 TGACTTACATCTACTATACCGGCAAT 59.508 38.462 0.00 0.00 0.00 3.56
780 783 3.620427 ACTATACCGGCAATGACAACA 57.380 42.857 0.00 0.00 0.00 3.33
783 786 3.620427 ATACCGGCAATGACAACAGTA 57.380 42.857 0.00 0.00 0.00 2.74
796 799 3.353557 ACAACAGTAGCGTAGATCTCCA 58.646 45.455 0.00 0.00 0.00 3.86
802 805 0.743688 AGCGTAGATCTCCAGCACTG 59.256 55.000 16.08 0.00 0.00 3.66
845 848 3.450817 TGAATTGCTCGTCCCTTCATCTA 59.549 43.478 0.00 0.00 0.00 1.98
856 859 4.590647 GTCCCTTCATCTATGTCTCATCCA 59.409 45.833 0.00 0.00 0.00 3.41
891 894 2.280119 GCGGCTGGCATCATCGTA 60.280 61.111 1.08 0.00 42.87 3.43
898 901 3.599343 GCTGGCATCATCGTATCCAATA 58.401 45.455 0.00 0.00 0.00 1.90
1233 1256 3.640967 CCTTTTCCCAAGATTGTGGACAA 59.359 43.478 0.00 0.00 41.65 3.18
1314 1337 4.072131 GCAAGGTTCCTTCATGTTGTAGA 58.928 43.478 0.60 0.00 0.00 2.59
1327 1350 9.978044 CTTCATGTTGTAGATCATAATCAGAGA 57.022 33.333 0.00 0.00 34.07 3.10
1379 1419 1.197721 CTCGTGTGACAATTTCCTGGC 59.802 52.381 0.00 0.00 0.00 4.85
1442 1483 8.840200 AGGAGAGATGATTAAAACACCTACTA 57.160 34.615 0.00 0.00 0.00 1.82
1454 1495 5.470047 AACACCTACTAGTCAAACTCCTG 57.530 43.478 0.00 0.00 0.00 3.86
1466 1507 4.393371 GTCAAACTCCTGTGAAGATAAGCC 59.607 45.833 0.00 0.00 0.00 4.35
1503 1544 8.746052 TGGTATCCATATTTTAAGGTTCACAG 57.254 34.615 0.00 0.00 0.00 3.66
1548 1590 7.201723 GCCATCATATGATTACACTGTTGTGAA 60.202 37.037 15.74 0.00 38.35 3.18
1557 1599 7.283354 TGATTACACTGTTGTGAACCATAACAA 59.717 33.333 9.79 0.00 42.85 2.83
1658 1710 3.857157 TGGGAAGAAAAGCACTACACT 57.143 42.857 0.00 0.00 0.00 3.55
1662 1714 4.338400 GGGAAGAAAAGCACTACACTTGTT 59.662 41.667 0.00 0.00 0.00 2.83
1663 1715 5.505819 GGGAAGAAAAGCACTACACTTGTTC 60.506 44.000 0.00 0.00 0.00 3.18
1667 1719 5.527582 AGAAAAGCACTACACTTGTTCGAAT 59.472 36.000 0.00 0.00 0.00 3.34
1668 1720 4.732285 AAGCACTACACTTGTTCGAATG 57.268 40.909 0.00 0.00 0.00 2.67
1669 1721 3.067106 AGCACTACACTTGTTCGAATGG 58.933 45.455 0.00 0.00 0.00 3.16
1670 1722 2.159627 GCACTACACTTGTTCGAATGGG 59.840 50.000 0.00 0.00 0.00 4.00
1671 1723 3.399330 CACTACACTTGTTCGAATGGGT 58.601 45.455 0.00 5.04 0.00 4.51
1676 1728 3.445805 ACACTTGTTCGAATGGGTTGTTT 59.554 39.130 0.00 0.00 0.00 2.83
1682 1734 5.238583 TGTTCGAATGGGTTGTTTTTGTTT 58.761 33.333 0.00 0.00 0.00 2.83
1690 1746 6.061231 TGGGTTGTTTTTGTTTTTGTTGTC 57.939 33.333 0.00 0.00 0.00 3.18
1693 1749 6.367421 GGTTGTTTTTGTTTTTGTTGTCTCC 58.633 36.000 0.00 0.00 0.00 3.71
1694 1750 5.830900 TGTTTTTGTTTTTGTTGTCTCCG 57.169 34.783 0.00 0.00 0.00 4.63
1695 1751 5.529791 TGTTTTTGTTTTTGTTGTCTCCGA 58.470 33.333 0.00 0.00 0.00 4.55
1705 1761 4.336889 TGTTGTCTCCGATCTCAAGTTT 57.663 40.909 0.00 0.00 0.00 2.66
1720 1776 9.383519 GATCTCAAGTTTTCATATGTGTTAGGA 57.616 33.333 1.90 0.00 0.00 2.94
1743 1799 6.213600 GGATATTAGCTAGTTGGGAAGGATCA 59.786 42.308 0.00 0.00 0.00 2.92
1746 1802 2.912956 AGCTAGTTGGGAAGGATCAACA 59.087 45.455 8.57 0.00 43.91 3.33
1762 1916 1.805943 CAACACATGATGCTCCGACAA 59.194 47.619 0.00 0.00 0.00 3.18
1789 1945 1.418334 CTGGCACCTATAGTCCTGCT 58.582 55.000 11.86 0.00 0.00 4.24
1805 1961 2.502295 CTGCTGAGAAAGGTCTTTGCT 58.498 47.619 0.18 0.00 35.05 3.91
1823 2072 6.484643 TCTTTGCTGACAGATAAATCTATGCC 59.515 38.462 6.65 0.00 34.85 4.40
1826 2075 4.991056 GCTGACAGATAAATCTATGCCGAA 59.009 41.667 6.65 0.00 34.85 4.30
1832 2081 8.682936 ACAGATAAATCTATGCCGAAAGAAAT 57.317 30.769 0.00 0.00 34.85 2.17
1855 2104 6.990341 TTATGACAACATTGGTGAGATCTG 57.010 37.500 9.09 0.00 37.87 2.90
1858 2107 1.089920 AACATTGGTGAGATCTGCGC 58.910 50.000 0.00 0.00 0.00 6.09
1924 2173 1.269958 TCTGACACTGTGCTATGCCT 58.730 50.000 7.90 0.00 0.00 4.75
1926 2175 0.975887 TGACACTGTGCTATGCCTCA 59.024 50.000 7.90 0.00 0.00 3.86
1939 2188 1.382629 GCCTCAAAGGGGGCAACTA 59.617 57.895 0.00 0.00 46.84 2.24
1944 2193 1.713647 TCAAAGGGGGCAACTAATGGA 59.286 47.619 0.00 0.00 0.00 3.41
1949 2198 1.377987 GGGCAACTAATGGACGGCA 60.378 57.895 0.00 0.00 0.00 5.69
1951 2200 1.429423 GCAACTAATGGACGGCAGC 59.571 57.895 0.00 0.00 0.00 5.25
1970 2219 3.077556 CACAGGTCGGGGAGGAGG 61.078 72.222 0.00 0.00 0.00 4.30
1992 2241 2.031069 GGCGCACTCGATTATGTCTAGA 60.031 50.000 10.83 0.00 38.10 2.43
1994 2243 4.230657 GCGCACTCGATTATGTCTAGATT 58.769 43.478 0.30 0.00 38.10 2.40
1995 2244 5.391449 GCGCACTCGATTATGTCTAGATTA 58.609 41.667 0.30 0.00 38.10 1.75
2002 2251 6.600350 TCGATTATGTCTAGATTAGTGCGAC 58.400 40.000 0.00 0.00 0.00 5.19
2003 2252 6.204108 TCGATTATGTCTAGATTAGTGCGACA 59.796 38.462 0.00 0.00 38.75 4.35
2023 2275 1.134491 ACCGCACTCTATTTAGGCCAC 60.134 52.381 5.01 0.00 0.00 5.01
2045 2298 0.034767 TCGCGAGAGAAAGAGGGGTA 60.035 55.000 3.71 0.00 34.84 3.69
2050 2303 3.243602 GCGAGAGAAAGAGGGGTAAGATC 60.244 52.174 0.00 0.00 0.00 2.75
2054 2307 2.023307 AGAAAGAGGGGTAAGATCGGGA 60.023 50.000 0.00 0.00 0.00 5.14
2088 2341 7.562088 AGGTATTTGGGTGTGTCTTTTCTTTTA 59.438 33.333 0.00 0.00 0.00 1.52
2130 2384 4.598257 CGGCTCGGATGTTTCACT 57.402 55.556 0.00 0.00 0.00 3.41
2135 2389 1.522668 CTCGGATGTTTCACTTGGCA 58.477 50.000 0.00 0.00 0.00 4.92
2144 2398 1.618487 TTCACTTGGCATGCACATGA 58.382 45.000 21.36 13.92 41.20 3.07
2153 2407 2.159421 GGCATGCACATGACTCTCTTTG 60.159 50.000 21.36 0.00 43.47 2.77
2155 2409 3.686241 GCATGCACATGACTCTCTTTGTA 59.314 43.478 14.21 0.00 41.20 2.41
2233 2496 2.160219 CCATGAATCCACGACACACAAG 59.840 50.000 0.00 0.00 0.00 3.16
2285 2548 1.324383 TTACGTCAGTGCTCTGGTGA 58.676 50.000 15.39 1.34 41.59 4.02
2301 2564 1.667724 GGTGATGATTTGGCGAGACAG 59.332 52.381 0.00 0.00 0.00 3.51
2302 2565 2.621338 GTGATGATTTGGCGAGACAGA 58.379 47.619 0.00 0.00 0.00 3.41
2303 2566 2.349886 GTGATGATTTGGCGAGACAGAC 59.650 50.000 0.00 0.00 0.00 3.51
2388 2651 3.014623 TGTCGACGATGGTCACTTCTAT 58.985 45.455 11.62 0.00 43.61 1.98
2416 2679 3.624326 TGCATGTTGTCTTTGTAGTGC 57.376 42.857 0.00 0.00 0.00 4.40
2471 2734 7.631510 TGACCTCATGGGATCAATATCTTTA 57.368 36.000 0.00 0.00 38.76 1.85
2496 2759 7.750947 ATGGTAAGTTTAACCTAGGAGATGT 57.249 36.000 17.98 0.00 37.91 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 9.801873 GCTTTTGCACTATATTTCATAGGAAAA 57.198 29.630 6.65 0.00 44.66 2.29
56 57 9.817809 CCATTCTTTTGATTCATGAGATTGAAT 57.182 29.630 15.81 0.00 46.39 2.57
57 58 7.762615 GCCATTCTTTTGATTCATGAGATTGAA 59.237 33.333 15.81 0.00 39.77 2.69
58 59 7.093684 TGCCATTCTTTTGATTCATGAGATTGA 60.094 33.333 15.81 0.00 0.00 2.57
59 60 7.039270 TGCCATTCTTTTGATTCATGAGATTG 58.961 34.615 0.00 11.17 0.00 2.67
60 61 7.177832 TGCCATTCTTTTGATTCATGAGATT 57.822 32.000 0.00 0.00 0.00 2.40
61 62 6.785337 TGCCATTCTTTTGATTCATGAGAT 57.215 33.333 0.00 0.00 0.00 2.75
62 63 6.785337 ATGCCATTCTTTTGATTCATGAGA 57.215 33.333 0.00 0.00 0.00 3.27
63 64 7.937649 TCTATGCCATTCTTTTGATTCATGAG 58.062 34.615 0.00 0.00 0.00 2.90
64 65 7.885009 TCTATGCCATTCTTTTGATTCATGA 57.115 32.000 0.00 0.00 0.00 3.07
128 129 9.759473 TGGAGGATCTCTTTTATTCAAGATTTT 57.241 29.630 0.00 0.00 32.21 1.82
129 130 9.933240 ATGGAGGATCTCTTTTATTCAAGATTT 57.067 29.630 0.00 0.00 32.21 2.17
149 150 1.364171 CGTCGGCTTCCTATGGAGG 59.636 63.158 0.00 0.00 45.35 4.30
150 151 1.300233 GCGTCGGCTTCCTATGGAG 60.300 63.158 0.00 0.00 35.83 3.86
151 152 1.399744 ATGCGTCGGCTTCCTATGGA 61.400 55.000 0.00 0.00 40.82 3.41
152 153 0.317160 TATGCGTCGGCTTCCTATGG 59.683 55.000 0.00 0.00 40.82 2.74
153 154 1.419374 GTATGCGTCGGCTTCCTATG 58.581 55.000 0.00 0.00 40.82 2.23
154 155 0.039437 CGTATGCGTCGGCTTCCTAT 60.039 55.000 0.00 0.00 40.82 2.57
155 156 1.096967 TCGTATGCGTCGGCTTCCTA 61.097 55.000 2.37 0.00 40.82 2.94
156 157 2.104331 CGTATGCGTCGGCTTCCT 59.896 61.111 0.00 0.00 40.82 3.36
157 158 1.944676 CTCGTATGCGTCGGCTTCC 60.945 63.158 2.37 0.00 40.82 3.46
158 159 2.577785 GCTCGTATGCGTCGGCTTC 61.578 63.158 2.37 0.00 40.82 3.86
159 160 2.582498 GCTCGTATGCGTCGGCTT 60.582 61.111 2.37 0.00 40.82 4.35
160 161 3.822192 TGCTCGTATGCGTCGGCT 61.822 61.111 2.37 0.00 40.82 5.52
161 162 3.617538 GTGCTCGTATGCGTCGGC 61.618 66.667 2.37 7.27 39.49 5.54
162 163 2.954868 GGTGCTCGTATGCGTCGG 60.955 66.667 2.37 0.00 39.49 4.79
163 164 1.939785 GAGGTGCTCGTATGCGTCG 60.940 63.158 2.37 0.00 39.49 5.12
164 165 0.867753 CAGAGGTGCTCGTATGCGTC 60.868 60.000 2.37 0.00 39.49 5.19
165 166 1.139734 CAGAGGTGCTCGTATGCGT 59.860 57.895 2.37 0.00 39.49 5.24
166 167 0.593518 CTCAGAGGTGCTCGTATGCG 60.594 60.000 0.00 0.00 35.36 4.73
167 168 0.741326 TCTCAGAGGTGCTCGTATGC 59.259 55.000 0.00 0.00 35.36 3.14
168 169 3.119316 AGTTTCTCAGAGGTGCTCGTATG 60.119 47.826 0.00 0.00 35.36 2.39
169 170 3.093057 AGTTTCTCAGAGGTGCTCGTAT 58.907 45.455 0.00 0.00 35.36 3.06
170 171 2.515854 AGTTTCTCAGAGGTGCTCGTA 58.484 47.619 0.00 0.00 35.36 3.43
171 172 1.333177 AGTTTCTCAGAGGTGCTCGT 58.667 50.000 0.00 0.00 35.36 4.18
172 173 2.159310 CCTAGTTTCTCAGAGGTGCTCG 60.159 54.545 0.00 0.00 35.36 5.03
173 174 2.418060 GCCTAGTTTCTCAGAGGTGCTC 60.418 54.545 0.00 0.00 0.00 4.26
174 175 1.552792 GCCTAGTTTCTCAGAGGTGCT 59.447 52.381 0.00 0.00 0.00 4.40
175 176 1.552792 AGCCTAGTTTCTCAGAGGTGC 59.447 52.381 0.00 0.00 0.00 5.01
176 177 2.828520 TCAGCCTAGTTTCTCAGAGGTG 59.171 50.000 0.00 0.00 0.00 4.00
177 178 3.096092 CTCAGCCTAGTTTCTCAGAGGT 58.904 50.000 0.00 0.00 0.00 3.85
178 179 3.360867 TCTCAGCCTAGTTTCTCAGAGG 58.639 50.000 0.00 0.00 0.00 3.69
179 180 5.398603 TTTCTCAGCCTAGTTTCTCAGAG 57.601 43.478 0.00 0.00 0.00 3.35
180 181 5.719085 AGATTTCTCAGCCTAGTTTCTCAGA 59.281 40.000 0.00 0.00 0.00 3.27
181 182 5.976458 AGATTTCTCAGCCTAGTTTCTCAG 58.024 41.667 0.00 0.00 0.00 3.35
182 183 6.014242 TCAAGATTTCTCAGCCTAGTTTCTCA 60.014 38.462 0.00 0.00 0.00 3.27
183 184 6.402222 TCAAGATTTCTCAGCCTAGTTTCTC 58.598 40.000 0.00 0.00 0.00 2.87
184 185 6.212388 TCTCAAGATTTCTCAGCCTAGTTTCT 59.788 38.462 0.00 0.00 0.00 2.52
185 186 6.402222 TCTCAAGATTTCTCAGCCTAGTTTC 58.598 40.000 0.00 0.00 0.00 2.78
186 187 6.365970 TCTCAAGATTTCTCAGCCTAGTTT 57.634 37.500 0.00 0.00 0.00 2.66
187 188 6.558488 ATCTCAAGATTTCTCAGCCTAGTT 57.442 37.500 0.00 0.00 0.00 2.24
188 189 6.558488 AATCTCAAGATTTCTCAGCCTAGT 57.442 37.500 0.00 0.00 41.64 2.57
189 190 7.984050 TGTTAATCTCAAGATTTCTCAGCCTAG 59.016 37.037 10.34 0.00 41.64 3.02
190 191 7.851228 TGTTAATCTCAAGATTTCTCAGCCTA 58.149 34.615 10.34 0.00 41.64 3.93
191 192 6.715280 TGTTAATCTCAAGATTTCTCAGCCT 58.285 36.000 10.34 0.00 41.64 4.58
192 193 6.992063 TGTTAATCTCAAGATTTCTCAGCC 57.008 37.500 10.34 0.00 41.64 4.85
193 194 7.484324 GCTTTGTTAATCTCAAGATTTCTCAGC 59.516 37.037 10.34 8.52 41.64 4.26
194 195 8.728833 AGCTTTGTTAATCTCAAGATTTCTCAG 58.271 33.333 10.34 3.43 41.64 3.35
195 196 8.627208 AGCTTTGTTAATCTCAAGATTTCTCA 57.373 30.769 10.34 5.63 41.64 3.27
196 197 9.980780 GTAGCTTTGTTAATCTCAAGATTTCTC 57.019 33.333 10.34 3.49 41.64 2.87
197 198 8.951243 GGTAGCTTTGTTAATCTCAAGATTTCT 58.049 33.333 10.34 1.59 41.64 2.52
198 199 8.730680 TGGTAGCTTTGTTAATCTCAAGATTTC 58.269 33.333 10.34 5.84 41.64 2.17
199 200 8.515414 GTGGTAGCTTTGTTAATCTCAAGATTT 58.485 33.333 10.34 0.00 41.64 2.17
200 201 7.665559 TGTGGTAGCTTTGTTAATCTCAAGATT 59.334 33.333 9.98 9.98 45.77 2.40
201 202 7.168219 TGTGGTAGCTTTGTTAATCTCAAGAT 58.832 34.615 0.00 0.00 36.07 2.40
202 203 6.530120 TGTGGTAGCTTTGTTAATCTCAAGA 58.470 36.000 0.00 0.00 0.00 3.02
203 204 6.801539 TGTGGTAGCTTTGTTAATCTCAAG 57.198 37.500 0.00 0.00 0.00 3.02
204 205 6.714810 ACATGTGGTAGCTTTGTTAATCTCAA 59.285 34.615 0.00 0.00 0.00 3.02
205 206 6.149308 CACATGTGGTAGCTTTGTTAATCTCA 59.851 38.462 18.51 0.00 0.00 3.27
206 207 6.546395 CACATGTGGTAGCTTTGTTAATCTC 58.454 40.000 18.51 0.00 0.00 2.75
207 208 5.106157 GCACATGTGGTAGCTTTGTTAATCT 60.106 40.000 26.55 0.00 0.00 2.40
208 209 5.095490 GCACATGTGGTAGCTTTGTTAATC 58.905 41.667 26.55 0.78 0.00 1.75
209 210 4.766891 AGCACATGTGGTAGCTTTGTTAAT 59.233 37.500 28.19 0.00 39.83 1.40
210 211 4.141287 AGCACATGTGGTAGCTTTGTTAA 58.859 39.130 28.19 0.00 39.83 2.01
211 212 3.750371 AGCACATGTGGTAGCTTTGTTA 58.250 40.909 28.19 0.00 39.83 2.41
212 213 2.586425 AGCACATGTGGTAGCTTTGTT 58.414 42.857 28.19 0.00 39.83 2.83
213 214 2.276732 AGCACATGTGGTAGCTTTGT 57.723 45.000 28.19 0.00 39.83 2.83
214 215 2.413239 CGAAGCACATGTGGTAGCTTTG 60.413 50.000 29.31 22.26 41.05 2.77
215 216 1.806542 CGAAGCACATGTGGTAGCTTT 59.193 47.619 29.31 14.59 41.05 3.51
216 217 1.270839 ACGAAGCACATGTGGTAGCTT 60.271 47.619 29.31 23.30 42.51 3.74
217 218 0.321671 ACGAAGCACATGTGGTAGCT 59.678 50.000 29.31 16.27 40.87 3.32
218 219 1.135972 CAACGAAGCACATGTGGTAGC 60.136 52.381 29.31 22.01 40.87 3.58
219 220 2.143122 ACAACGAAGCACATGTGGTAG 58.857 47.619 29.31 25.84 40.87 3.18
220 221 2.139917 GACAACGAAGCACATGTGGTA 58.860 47.619 29.31 0.00 40.87 3.25
221 222 0.944386 GACAACGAAGCACATGTGGT 59.056 50.000 24.37 24.37 44.00 4.16
222 223 0.943673 TGACAACGAAGCACATGTGG 59.056 50.000 26.55 12.62 0.00 4.17
223 224 2.223226 TGTTGACAACGAAGCACATGTG 60.223 45.455 21.83 21.83 0.00 3.21
224 225 2.013400 TGTTGACAACGAAGCACATGT 58.987 42.857 13.46 0.00 0.00 3.21
225 226 2.753989 TGTTGACAACGAAGCACATG 57.246 45.000 13.46 0.00 0.00 3.21
226 227 3.119673 TGTTTGTTGACAACGAAGCACAT 60.120 39.130 19.30 0.00 35.52 3.21
227 228 2.226674 TGTTTGTTGACAACGAAGCACA 59.773 40.909 19.30 12.90 35.52 4.57
228 229 2.592459 GTGTTTGTTGACAACGAAGCAC 59.408 45.455 19.30 21.81 35.52 4.40
229 230 2.226674 TGTGTTTGTTGACAACGAAGCA 59.773 40.909 19.30 17.34 35.52 3.91
230 231 2.857618 TGTGTTTGTTGACAACGAAGC 58.142 42.857 19.30 15.39 35.52 3.86
231 232 3.718864 CGATGTGTTTGTTGACAACGAAG 59.281 43.478 19.30 5.19 39.83 3.79
232 233 3.675481 CGATGTGTTTGTTGACAACGAA 58.325 40.909 15.67 15.67 39.83 3.85
233 234 2.537931 GCGATGTGTTTGTTGACAACGA 60.538 45.455 13.46 9.00 39.83 3.85
234 235 1.772966 GCGATGTGTTTGTTGACAACG 59.227 47.619 13.46 0.00 40.24 4.10
235 236 3.065019 AGCGATGTGTTTGTTGACAAC 57.935 42.857 11.54 11.54 35.28 3.32
236 237 3.433709 CAAGCGATGTGTTTGTTGACAA 58.566 40.909 0.00 0.00 34.42 3.18
237 238 2.794282 GCAAGCGATGTGTTTGTTGACA 60.794 45.455 0.00 0.00 40.56 3.58
238 239 1.780860 GCAAGCGATGTGTTTGTTGAC 59.219 47.619 0.00 0.00 40.56 3.18
239 240 1.268999 GGCAAGCGATGTGTTTGTTGA 60.269 47.619 0.00 0.00 40.56 3.18
240 241 1.130955 GGCAAGCGATGTGTTTGTTG 58.869 50.000 0.00 0.00 40.56 3.33
241 242 0.743688 TGGCAAGCGATGTGTTTGTT 59.256 45.000 0.00 0.00 40.56 2.83
242 243 0.030638 GTGGCAAGCGATGTGTTTGT 59.969 50.000 0.00 0.00 40.56 2.83
243 244 0.311790 AGTGGCAAGCGATGTGTTTG 59.688 50.000 0.00 0.00 41.30 2.93
244 245 0.311790 CAGTGGCAAGCGATGTGTTT 59.688 50.000 0.00 0.00 0.00 2.83
245 246 0.534877 TCAGTGGCAAGCGATGTGTT 60.535 50.000 0.00 0.00 0.00 3.32
246 247 0.534877 TTCAGTGGCAAGCGATGTGT 60.535 50.000 0.00 0.00 0.00 3.72
247 248 0.592637 TTTCAGTGGCAAGCGATGTG 59.407 50.000 0.00 0.00 0.00 3.21
248 249 0.877071 CTTTCAGTGGCAAGCGATGT 59.123 50.000 0.00 0.00 0.00 3.06
249 250 0.877071 ACTTTCAGTGGCAAGCGATG 59.123 50.000 0.00 0.00 0.00 3.84
250 251 2.472695 TACTTTCAGTGGCAAGCGAT 57.527 45.000 0.00 0.00 0.00 4.58
251 252 2.472695 ATACTTTCAGTGGCAAGCGA 57.527 45.000 0.00 0.00 0.00 4.93
252 253 4.154195 ACTTTATACTTTCAGTGGCAAGCG 59.846 41.667 0.00 0.00 0.00 4.68
253 254 5.629079 ACTTTATACTTTCAGTGGCAAGC 57.371 39.130 0.00 0.00 0.00 4.01
254 255 6.970484 ACAACTTTATACTTTCAGTGGCAAG 58.030 36.000 0.00 0.00 0.00 4.01
255 256 6.952773 ACAACTTTATACTTTCAGTGGCAA 57.047 33.333 0.00 0.00 0.00 4.52
256 257 6.952773 AACAACTTTATACTTTCAGTGGCA 57.047 33.333 0.00 0.00 0.00 4.92
257 258 9.908152 ATTTAACAACTTTATACTTTCAGTGGC 57.092 29.630 0.00 0.00 0.00 5.01
291 292 8.639761 GGGTGCTTACACTTTTCTAGATCTATA 58.360 37.037 2.11 0.00 46.57 1.31
292 293 7.125811 TGGGTGCTTACACTTTTCTAGATCTAT 59.874 37.037 2.11 0.00 46.57 1.98
293 294 6.439375 TGGGTGCTTACACTTTTCTAGATCTA 59.561 38.462 1.69 1.69 46.57 1.98
294 295 5.248477 TGGGTGCTTACACTTTTCTAGATCT 59.752 40.000 0.00 0.00 46.57 2.75
295 296 5.488341 TGGGTGCTTACACTTTTCTAGATC 58.512 41.667 0.00 0.00 46.57 2.75
296 297 5.499004 TGGGTGCTTACACTTTTCTAGAT 57.501 39.130 0.00 0.00 46.57 1.98
297 298 4.967084 TGGGTGCTTACACTTTTCTAGA 57.033 40.909 0.00 0.00 46.57 2.43
298 299 6.201044 CGATATGGGTGCTTACACTTTTCTAG 59.799 42.308 0.00 0.00 46.57 2.43
299 300 6.046593 CGATATGGGTGCTTACACTTTTCTA 58.953 40.000 0.00 0.00 46.57 2.10
300 301 4.876107 CGATATGGGTGCTTACACTTTTCT 59.124 41.667 0.00 0.00 46.57 2.52
301 302 4.873827 TCGATATGGGTGCTTACACTTTTC 59.126 41.667 0.00 0.00 46.57 2.29
302 303 4.839121 TCGATATGGGTGCTTACACTTTT 58.161 39.130 0.00 0.00 46.57 2.27
303 304 4.081087 ACTCGATATGGGTGCTTACACTTT 60.081 41.667 0.00 0.00 46.57 2.66
304 305 3.451178 ACTCGATATGGGTGCTTACACTT 59.549 43.478 0.00 0.00 46.57 3.16
305 306 3.031736 ACTCGATATGGGTGCTTACACT 58.968 45.455 0.00 0.00 46.57 3.55
306 307 3.454371 ACTCGATATGGGTGCTTACAC 57.546 47.619 0.00 0.00 46.66 2.90
307 308 6.904463 TTATACTCGATATGGGTGCTTACA 57.096 37.500 0.00 0.00 0.00 2.41
308 309 7.117379 GGTTTTATACTCGATATGGGTGCTTAC 59.883 40.741 0.00 0.00 0.00 2.34
309 310 7.015877 AGGTTTTATACTCGATATGGGTGCTTA 59.984 37.037 0.00 0.00 0.00 3.09
310 311 5.995897 GGTTTTATACTCGATATGGGTGCTT 59.004 40.000 0.00 0.00 0.00 3.91
311 312 5.307196 AGGTTTTATACTCGATATGGGTGCT 59.693 40.000 0.00 0.00 0.00 4.40
312 313 5.408604 CAGGTTTTATACTCGATATGGGTGC 59.591 44.000 0.00 0.00 0.00 5.01
313 314 5.408604 GCAGGTTTTATACTCGATATGGGTG 59.591 44.000 0.00 0.00 0.00 4.61
314 315 5.071250 TGCAGGTTTTATACTCGATATGGGT 59.929 40.000 0.00 0.00 0.00 4.51
315 316 5.547465 TGCAGGTTTTATACTCGATATGGG 58.453 41.667 0.00 0.00 0.00 4.00
316 317 6.313905 GGATGCAGGTTTTATACTCGATATGG 59.686 42.308 0.00 0.00 0.00 2.74
317 318 7.099764 AGGATGCAGGTTTTATACTCGATATG 58.900 38.462 0.00 0.00 0.00 1.78
318 319 7.039011 TGAGGATGCAGGTTTTATACTCGATAT 60.039 37.037 0.00 0.00 35.06 1.63
319 320 6.266786 TGAGGATGCAGGTTTTATACTCGATA 59.733 38.462 0.00 0.00 35.06 2.92
320 321 5.070446 TGAGGATGCAGGTTTTATACTCGAT 59.930 40.000 0.00 0.00 35.06 3.59
321 322 4.404394 TGAGGATGCAGGTTTTATACTCGA 59.596 41.667 0.00 0.00 35.06 4.04
322 323 4.693283 TGAGGATGCAGGTTTTATACTCG 58.307 43.478 0.00 0.00 35.06 4.18
334 335 2.124403 GCCCACCTGAGGATGCAG 60.124 66.667 4.99 0.00 35.66 4.41
335 336 2.934932 TGCCCACCTGAGGATGCA 60.935 61.111 4.99 7.92 0.00 3.96
336 337 1.992519 ATCTGCCCACCTGAGGATGC 61.993 60.000 4.99 5.02 0.00 3.91
337 338 0.549950 AATCTGCCCACCTGAGGATG 59.450 55.000 4.99 0.00 0.00 3.51
338 339 0.842635 GAATCTGCCCACCTGAGGAT 59.157 55.000 4.99 0.00 0.00 3.24
339 340 1.274703 GGAATCTGCCCACCTGAGGA 61.275 60.000 4.99 0.00 0.00 3.71
340 341 1.225704 GGAATCTGCCCACCTGAGG 59.774 63.158 0.00 0.00 0.00 3.86
341 342 0.329261 TTGGAATCTGCCCACCTGAG 59.671 55.000 0.00 0.00 32.58 3.35
342 343 0.329261 CTTGGAATCTGCCCACCTGA 59.671 55.000 0.00 0.00 32.58 3.86
343 344 0.682209 CCTTGGAATCTGCCCACCTG 60.682 60.000 0.00 0.00 32.58 4.00
344 345 1.142688 ACCTTGGAATCTGCCCACCT 61.143 55.000 0.00 0.00 32.58 4.00
345 346 0.623723 TACCTTGGAATCTGCCCACC 59.376 55.000 0.00 0.00 32.58 4.61
346 347 2.507407 TTACCTTGGAATCTGCCCAC 57.493 50.000 0.00 0.00 32.58 4.61
347 348 3.075283 TCTTTTACCTTGGAATCTGCCCA 59.925 43.478 0.00 0.00 0.00 5.36
348 349 3.444034 GTCTTTTACCTTGGAATCTGCCC 59.556 47.826 0.00 0.00 0.00 5.36
349 350 3.444034 GGTCTTTTACCTTGGAATCTGCC 59.556 47.826 0.00 0.00 45.75 4.85
350 351 4.703645 GGTCTTTTACCTTGGAATCTGC 57.296 45.455 0.00 0.00 45.75 4.26
362 363 7.042254 CCCTATAAATGCACGTAGGTCTTTTAC 60.042 40.741 12.07 0.00 33.42 2.01
363 364 6.987992 CCCTATAAATGCACGTAGGTCTTTTA 59.012 38.462 12.07 1.68 33.42 1.52
364 365 5.820947 CCCTATAAATGCACGTAGGTCTTTT 59.179 40.000 12.07 0.00 33.42 2.27
365 366 5.365619 CCCTATAAATGCACGTAGGTCTTT 58.634 41.667 12.07 0.32 33.42 2.52
366 367 4.202326 CCCCTATAAATGCACGTAGGTCTT 60.202 45.833 12.07 0.00 33.42 3.01
367 368 3.323979 CCCCTATAAATGCACGTAGGTCT 59.676 47.826 12.07 0.00 33.42 3.85
368 369 3.070590 ACCCCTATAAATGCACGTAGGTC 59.929 47.826 12.07 0.00 33.42 3.85
369 370 3.043418 ACCCCTATAAATGCACGTAGGT 58.957 45.455 12.07 0.27 33.42 3.08
370 371 3.764237 ACCCCTATAAATGCACGTAGG 57.236 47.619 0.00 0.00 34.74 3.18
371 372 5.235516 CCTAACCCCTATAAATGCACGTAG 58.764 45.833 0.00 0.00 0.00 3.51
374 375 3.408634 CCCTAACCCCTATAAATGCACG 58.591 50.000 0.00 0.00 0.00 5.34
393 394 1.000843 GTTCAGGAACCAAACATGCCC 59.999 52.381 0.64 0.00 35.36 5.36
394 395 2.438868 GTTCAGGAACCAAACATGCC 57.561 50.000 0.64 0.00 35.36 4.40
429 430 0.611618 CCACTAGGCATGTTTGGGCA 60.612 55.000 0.00 0.00 0.00 5.36
488 490 2.107950 TAAGTTTCATGCGAGTGGGG 57.892 50.000 0.00 0.00 0.00 4.96
514 516 2.501723 TCCTAGCAAGCCAGGTTCTTAG 59.498 50.000 6.43 0.00 33.37 2.18
516 518 1.362224 TCCTAGCAAGCCAGGTTCTT 58.638 50.000 6.43 0.00 33.37 2.52
554 556 3.576982 TCGACTCAACCTTACTCCACAAT 59.423 43.478 0.00 0.00 0.00 2.71
555 557 2.960384 TCGACTCAACCTTACTCCACAA 59.040 45.455 0.00 0.00 0.00 3.33
591 593 2.828095 GCACCCGCATGTATGGCA 60.828 61.111 0.00 0.00 38.36 4.92
614 616 4.738998 CCGCCAACTCCATGCCCA 62.739 66.667 0.00 0.00 0.00 5.36
654 657 3.061848 CCGATTTTGCGCCACCCT 61.062 61.111 4.18 0.00 0.00 4.34
657 660 1.134694 GAGACCGATTTTGCGCCAC 59.865 57.895 4.18 0.00 0.00 5.01
681 684 4.755123 TGCTAGAGGTGAACAAGTAAAAGC 59.245 41.667 0.00 0.00 0.00 3.51
692 695 1.605058 GCCCGACTGCTAGAGGTGAA 61.605 60.000 0.00 0.00 0.00 3.18
724 727 1.675641 GCCATTGGTGCCGAGAACT 60.676 57.895 4.26 0.00 0.00 3.01
737 740 2.949177 TGTAAGTCACTGGTGCCATT 57.051 45.000 0.00 0.00 0.00 3.16
739 742 1.977854 AGATGTAAGTCACTGGTGCCA 59.022 47.619 0.00 0.00 0.00 4.92
755 758 5.134202 TGTCATTGCCGGTATAGTAGATG 57.866 43.478 1.90 0.00 0.00 2.90
773 776 3.377485 GGAGATCTACGCTACTGTTGTCA 59.623 47.826 0.00 0.00 0.00 3.58
780 783 1.950909 GTGCTGGAGATCTACGCTACT 59.049 52.381 18.40 0.00 0.00 2.57
783 786 0.743688 CAGTGCTGGAGATCTACGCT 59.256 55.000 18.40 8.46 0.00 5.07
845 848 3.432749 CGGAAATGAGGTGGATGAGACAT 60.433 47.826 0.00 0.00 0.00 3.06
856 859 1.076777 CCCATGCCGGAAATGAGGT 60.077 57.895 16.79 0.00 36.56 3.85
881 884 2.604914 CCGCTATTGGATACGATGATGC 59.395 50.000 0.00 0.00 42.18 3.91
891 894 0.602905 GCCGCTTACCGCTATTGGAT 60.603 55.000 0.00 0.00 36.13 3.41
898 901 1.087771 GTTGTATGCCGCTTACCGCT 61.088 55.000 12.51 0.00 36.13 5.52
908 911 1.304052 TGCAGGGTGGTTGTATGCC 60.304 57.895 0.00 0.00 36.04 4.40
1180 1203 2.743664 TCATTCGAAGCATGTTCACAGG 59.256 45.455 3.35 0.00 0.00 4.00
1233 1256 6.096282 GTCTAGCAACCTCATCTCTCTAAACT 59.904 42.308 0.00 0.00 0.00 2.66
1296 1319 8.682936 ATTATGATCTACAACATGAAGGAACC 57.317 34.615 0.00 0.00 0.00 3.62
1314 1337 9.091220 TGATCACTCTGAATCTCTGATTATGAT 57.909 33.333 0.00 0.00 31.00 2.45
1354 1377 4.988540 CAGGAAATTGTCACACGAGTTCTA 59.011 41.667 0.00 0.00 36.93 2.10
1361 1384 0.950836 TGCCAGGAAATTGTCACACG 59.049 50.000 0.00 0.00 0.00 4.49
1401 1441 8.226810 TCATCTCTCCTCTAAGATCTTCAATCT 58.773 37.037 12.24 0.00 29.77 2.40
1432 1473 4.900054 ACAGGAGTTTGACTAGTAGGTGTT 59.100 41.667 0.00 0.00 0.00 3.32
1442 1483 5.241662 GCTTATCTTCACAGGAGTTTGACT 58.758 41.667 0.00 0.00 0.00 3.41
1466 1507 7.531857 AATATGGATACCATCTATAGCTCGG 57.468 40.000 6.55 0.00 40.74 4.63
1503 1544 6.821665 TGATGGCAAGAACTAACAGGTAATAC 59.178 38.462 0.00 0.00 0.00 1.89
1512 1553 9.056005 TGTAATCATATGATGGCAAGAACTAAC 57.944 33.333 18.85 4.49 34.49 2.34
1658 1710 4.822026 ACAAAAACAACCCATTCGAACAA 58.178 34.783 0.00 0.00 0.00 2.83
1662 1714 5.701290 ACAAAAACAAAAACAACCCATTCGA 59.299 32.000 0.00 0.00 0.00 3.71
1663 1715 5.932661 ACAAAAACAAAAACAACCCATTCG 58.067 33.333 0.00 0.00 0.00 3.34
1667 1719 5.823045 AGACAACAAAAACAAAAACAACCCA 59.177 32.000 0.00 0.00 0.00 4.51
1668 1720 6.307031 AGACAACAAAAACAAAAACAACCC 57.693 33.333 0.00 0.00 0.00 4.11
1669 1721 6.367421 GGAGACAACAAAAACAAAAACAACC 58.633 36.000 0.00 0.00 0.00 3.77
1670 1722 6.068300 CGGAGACAACAAAAACAAAAACAAC 58.932 36.000 0.00 0.00 0.00 3.32
1671 1723 5.983720 TCGGAGACAACAAAAACAAAAACAA 59.016 32.000 0.00 0.00 0.00 2.83
1676 1728 5.355630 TGAGATCGGAGACAACAAAAACAAA 59.644 36.000 0.00 0.00 42.51 2.83
1682 1734 4.336889 ACTTGAGATCGGAGACAACAAA 57.663 40.909 0.94 0.00 42.51 2.83
1690 1746 6.536582 ACACATATGAAAACTTGAGATCGGAG 59.463 38.462 10.38 0.00 0.00 4.63
1693 1749 8.331022 CCTAACACATATGAAAACTTGAGATCG 58.669 37.037 10.38 0.00 0.00 3.69
1694 1750 9.383519 TCCTAACACATATGAAAACTTGAGATC 57.616 33.333 10.38 0.00 0.00 2.75
1695 1751 9.911788 ATCCTAACACATATGAAAACTTGAGAT 57.088 29.630 10.38 0.00 0.00 2.75
1720 1776 7.072454 TGTTGATCCTTCCCAACTAGCTAATAT 59.928 37.037 0.00 0.00 42.16 1.28
1722 1778 5.191722 TGTTGATCCTTCCCAACTAGCTAAT 59.808 40.000 0.00 0.00 42.16 1.73
1726 1782 3.010420 GTGTTGATCCTTCCCAACTAGC 58.990 50.000 0.00 0.00 42.16 3.42
1743 1799 2.183478 TTGTCGGAGCATCATGTGTT 57.817 45.000 0.00 0.00 36.25 3.32
1746 1802 2.489329 CCTTTTTGTCGGAGCATCATGT 59.511 45.455 0.00 0.00 36.25 3.21
1762 1916 2.846827 ACTATAGGTGCCAGCTCCTTTT 59.153 45.455 17.64 9.21 40.09 2.27
1789 1945 3.134623 TCTGTCAGCAAAGACCTTTCTCA 59.865 43.478 0.00 0.00 37.73 3.27
1805 1961 6.816136 TCTTTCGGCATAGATTTATCTGTCA 58.184 36.000 2.51 0.00 37.76 3.58
1823 2072 7.807433 TCACCAATGTTGTCATAATTTCTTTCG 59.193 33.333 0.00 0.00 33.49 3.46
1826 2075 8.408043 TCTCACCAATGTTGTCATAATTTCTT 57.592 30.769 0.00 0.00 33.49 2.52
1832 2081 5.355071 GCAGATCTCACCAATGTTGTCATAA 59.645 40.000 0.00 0.00 33.49 1.90
1855 2104 1.571919 ATAGAAATGTCTGTCGGCGC 58.428 50.000 0.00 0.00 35.12 6.53
1858 2107 3.975670 GTCGCTATAGAAATGTCTGTCGG 59.024 47.826 3.21 0.00 35.12 4.79
1924 2173 1.713647 TCCATTAGTTGCCCCCTTTGA 59.286 47.619 0.00 0.00 0.00 2.69
1926 2175 1.615919 CGTCCATTAGTTGCCCCCTTT 60.616 52.381 0.00 0.00 0.00 3.11
1936 2185 2.511600 GCGCTGCCGTCCATTAGT 60.512 61.111 0.00 0.00 36.67 2.24
1968 2217 1.069765 CATAATCGAGTGCGCCCCT 59.930 57.895 4.18 0.00 37.46 4.79
1970 2219 0.249489 AGACATAATCGAGTGCGCCC 60.249 55.000 4.18 0.00 37.46 6.13
1972 2221 3.269486 TCTAGACATAATCGAGTGCGC 57.731 47.619 0.00 0.00 37.46 6.09
1979 2228 6.303496 GTGTCGCACTAATCTAGACATAATCG 59.697 42.308 0.00 0.00 42.68 3.34
2002 2251 1.134521 TGGCCTAAATAGAGTGCGGTG 60.135 52.381 3.32 0.00 0.00 4.94
2003 2252 1.134491 GTGGCCTAAATAGAGTGCGGT 60.134 52.381 3.32 0.00 0.00 5.68
2013 2265 2.510691 CGCGACCGTGGCCTAAAT 60.511 61.111 0.00 0.00 0.00 1.40
2023 2275 1.226435 CCTCTTTCTCTCGCGACCG 60.226 63.158 3.71 0.00 0.00 4.79
2050 2303 3.131396 CCAAATACCTCTTCGATTCCCG 58.869 50.000 0.00 0.00 40.25 5.14
2054 2307 4.261801 CACACCCAAATACCTCTTCGATT 58.738 43.478 0.00 0.00 0.00 3.34
2130 2384 1.003928 AGAGAGTCATGTGCATGCCAA 59.996 47.619 16.68 3.14 38.65 4.52
2135 2389 4.692625 GTGTACAAAGAGAGTCATGTGCAT 59.307 41.667 0.00 0.00 39.83 3.96
2211 2474 1.346068 TGTGTGTCGTGGATTCATGGA 59.654 47.619 0.00 0.00 0.00 3.41
2255 2518 3.655276 ACTGACGTAATTTCTGTCGGT 57.345 42.857 11.10 11.10 45.00 4.69
2285 2548 2.768253 TGTCTGTCTCGCCAAATCAT 57.232 45.000 0.00 0.00 0.00 2.45
2302 2565 9.109393 GTGTTATATAAGGTCATGACACATTGT 57.891 33.333 26.47 17.10 36.91 2.71
2303 2566 9.330063 AGTGTTATATAAGGTCATGACACATTG 57.670 33.333 26.47 0.00 38.77 2.82
2388 2651 3.708403 AAGACAACATGCATCTCTGGA 57.292 42.857 0.00 0.00 0.00 3.86
2416 2679 0.586319 CAGCAAACACTACACCACGG 59.414 55.000 0.00 0.00 0.00 4.94
2471 2734 8.159229 ACATCTCCTAGGTTAAACTTACCATT 57.841 34.615 9.08 0.00 38.16 3.16
2496 2759 1.343142 CCGACCGACATCCATATCCAA 59.657 52.381 0.00 0.00 0.00 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.