Multiple sequence alignment - TraesCS1B01G197600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G197600 chr1B 100.000 3459 0 0 1 3459 355154324 355157782 0.000000e+00 6388.0
1 TraesCS1B01G197600 chr1B 98.095 105 2 0 3355 3459 22665381 22665277 2.120000e-42 183.0
2 TraesCS1B01G197600 chr1B 95.455 110 5 0 3350 3459 45812163 45812272 3.550000e-40 176.0
3 TraesCS1B01G197600 chr1A 94.002 2851 110 25 491 3295 331519318 331516483 0.000000e+00 4261.0
4 TraesCS1B01G197600 chr1A 82.704 318 46 6 96 408 331519722 331519409 1.220000e-69 274.0
5 TraesCS1B01G197600 chr1A 92.105 114 9 0 1967 2080 22660640 22660527 9.930000e-36 161.0
6 TraesCS1B01G197600 chr1A 94.624 93 4 1 473 564 331519408 331519316 3.600000e-30 143.0
7 TraesCS1B01G197600 chr1A 100.000 32 0 0 3308 3339 27308390 27308421 3.730000e-05 60.2
8 TraesCS1B01G197600 chr1D 93.686 2819 102 29 516 3295 257476229 257473448 0.000000e+00 4150.0
9 TraesCS1B01G197600 chr1D 96.354 192 7 0 2474 2665 123460318 123460509 2.000000e-82 316.0
10 TraesCS1B01G197600 chr1D 96.354 192 7 0 2474 2665 288253463 288253272 2.000000e-82 316.0
11 TraesCS1B01G197600 chr1D 91.538 130 9 2 3104 3231 242719783 242719654 9.860000e-41 178.0
12 TraesCS1B01G197600 chr1D 86.275 51 7 0 3294 3344 467051040 467050990 4.820000e-04 56.5
13 TraesCS1B01G197600 chr7D 89.417 463 34 7 2775 3231 46554742 46554289 1.390000e-158 569.0
14 TraesCS1B01G197600 chr7D 92.857 112 8 0 1969 2080 179537696 179537585 2.760000e-36 163.0
15 TraesCS1B01G197600 chr6D 89.201 463 33 8 2775 3231 37355487 37355036 2.330000e-156 562.0
16 TraesCS1B01G197600 chr6D 81.416 226 39 3 203 426 471528140 471527916 7.630000e-42 182.0
17 TraesCS1B01G197600 chr4D 89.154 461 33 8 2775 3229 170196541 170196990 3.020000e-155 558.0
18 TraesCS1B01G197600 chr4D 91.379 116 10 0 1969 2084 426642617 426642732 3.570000e-35 159.0
19 TraesCS1B01G197600 chr2A 86.797 462 41 9 2775 3230 145401125 145400678 6.670000e-137 497.0
20 TraesCS1B01G197600 chr2A 87.075 147 17 1 1969 2113 81969156 81969010 7.680000e-37 165.0
21 TraesCS1B01G197600 chrUn 95.833 192 8 0 2474 2665 79160945 79160754 9.320000e-81 311.0
22 TraesCS1B01G197600 chrUn 98.058 103 2 0 3357 3459 316483464 316483362 2.740000e-41 180.0
23 TraesCS1B01G197600 chrUn 98.058 103 2 0 3357 3459 327795989 327795887 2.740000e-41 180.0
24 TraesCS1B01G197600 chrUn 98.058 103 2 0 3357 3459 394984284 394984182 2.740000e-41 180.0
25 TraesCS1B01G197600 chr5D 94.949 198 10 0 2468 2665 351513352 351513549 9.320000e-81 311.0
26 TraesCS1B01G197600 chr5D 92.593 81 5 1 2775 2855 556136394 556136315 7.840000e-22 115.0
27 TraesCS1B01G197600 chr5D 75.839 149 32 4 1208 1354 525471993 525472139 4.790000e-09 73.1
28 TraesCS1B01G197600 chr3D 94.949 198 10 0 2468 2665 16353027 16353224 9.320000e-81 311.0
29 TraesCS1B01G197600 chr2D 95.833 192 8 0 2474 2665 551019616 551019807 9.320000e-81 311.0
30 TraesCS1B01G197600 chr2D 95.337 193 8 1 2474 2665 307552452 307552260 4.340000e-79 305.0
31 TraesCS1B01G197600 chr2D 82.609 230 38 2 203 430 537516464 537516235 5.850000e-48 202.0
32 TraesCS1B01G197600 chr2D 81.778 225 34 5 203 426 350071443 350071661 7.630000e-42 182.0
33 TraesCS1B01G197600 chr2D 80.973 226 41 2 203 426 476279173 476279398 9.860000e-41 178.0
34 TraesCS1B01G197600 chr2D 95.349 43 2 0 3300 3342 139109398 139109356 6.190000e-08 69.4
35 TraesCS1B01G197600 chr3B 80.645 341 51 12 98 431 100825564 100825232 2.060000e-62 250.0
36 TraesCS1B01G197600 chr3B 83.491 212 33 2 217 426 617959706 617959917 2.720000e-46 196.0
37 TraesCS1B01G197600 chr3B 99.038 104 1 0 3356 3459 370025630 370025733 1.640000e-43 187.0
38 TraesCS1B01G197600 chr3A 83.260 227 34 4 203 426 535228911 535229136 4.530000e-49 206.0
39 TraesCS1B01G197600 chr3A 100.000 29 0 0 3306 3334 659800248 659800276 2.000000e-03 54.7
40 TraesCS1B01G197600 chr7B 97.170 106 3 0 3354 3459 583174913 583174808 2.740000e-41 180.0
41 TraesCS1B01G197600 chr7B 97.333 75 2 0 2421 2495 76818946 76819020 1.010000e-25 128.0
42 TraesCS1B01G197600 chr7B 86.538 52 6 1 3284 3335 507951197 507951247 4.820000e-04 56.5
43 TraesCS1B01G197600 chr5B 96.330 109 4 0 3351 3459 122849961 122849853 2.740000e-41 180.0
44 TraesCS1B01G197600 chr5B 76.510 149 31 4 1208 1354 659770187 659770333 1.030000e-10 78.7
45 TraesCS1B01G197600 chr5B 94.444 36 2 0 1317 1352 659984252 659984287 4.820000e-04 56.5
46 TraesCS1B01G197600 chr4A 98.058 103 2 0 3357 3459 717048763 717048661 2.740000e-41 180.0
47 TraesCS1B01G197600 chr4A 80.617 227 40 4 203 426 651346223 651346448 4.590000e-39 172.0
48 TraesCS1B01G197600 chr4A 88.636 132 11 3 1952 2080 7128758 7128888 1.290000e-34 158.0
49 TraesCS1B01G197600 chr6A 92.920 113 8 0 1968 2080 33950460 33950572 7.680000e-37 165.0
50 TraesCS1B01G197600 chr5A 91.453 117 8 2 1966 2081 120079164 120079279 3.570000e-35 159.0
51 TraesCS1B01G197600 chr7A 75.072 349 59 20 98 426 182181084 182180744 1.670000e-28 137.0
52 TraesCS1B01G197600 chr7A 100.000 29 0 0 3306 3334 188888751 188888779 2.000000e-03 54.7
53 TraesCS1B01G197600 chr2B 97.222 36 1 0 3307 3342 673202329 673202294 1.040000e-05 62.1
54 TraesCS1B01G197600 chr2B 97.143 35 1 0 3308 3342 673238060 673238026 3.730000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G197600 chr1B 355154324 355157782 3458 False 6388.000000 6388 100.000000 1 3459 1 chr1B.!!$F2 3458
1 TraesCS1B01G197600 chr1A 331516483 331519722 3239 True 1559.333333 4261 90.443333 96 3295 3 chr1A.!!$R2 3199
2 TraesCS1B01G197600 chr1D 257473448 257476229 2781 True 4150.000000 4150 93.686000 516 3295 1 chr1D.!!$R2 2779

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
32 33 0.036105 TCTACCACGAGAGGCACGTA 60.036 55.0 0.00 0.0 42.07 3.57 F
93 94 0.109132 GGCCGTGCCTCTCAAAAATG 60.109 55.0 7.58 0.0 46.69 2.32 F
593 671 0.539901 GCAGGGCCGTCTATAGGAGA 60.540 60.0 0.00 0.0 0.00 3.71 F
1700 1798 0.763035 AGCTTTCGGTGGTTACTGGT 59.237 50.0 0.00 0.0 33.84 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1407 1504 0.555769 AACAGGGGGCAAGAAAGACA 59.444 50.0 0.00 0.0 0.00 3.41 R
1673 1771 0.875059 CCACCGAAAGCTGAAAGGAC 59.125 55.0 5.00 0.0 0.00 3.85 R
2308 2408 0.780596 CACGGATGCGAGAATCATCG 59.219 55.0 15.49 0.0 45.48 3.84 R
3353 3485 0.115745 TTGGGACGGAGGGAGTACTT 59.884 55.0 0.00 0.0 0.00 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 2.450609 TTTTCTACCACGAGAGGCAC 57.549 50.000 0.00 0.00 0.00 5.01
30 31 0.242825 TTTCTACCACGAGAGGCACG 59.757 55.000 0.00 0.00 0.00 5.34
31 32 0.892358 TTCTACCACGAGAGGCACGT 60.892 55.000 0.00 0.00 44.83 4.49
32 33 0.036105 TCTACCACGAGAGGCACGTA 60.036 55.000 0.00 0.00 42.07 3.57
33 34 1.022735 CTACCACGAGAGGCACGTAT 58.977 55.000 0.00 0.00 42.07 3.06
34 35 1.404391 CTACCACGAGAGGCACGTATT 59.596 52.381 0.00 0.00 42.07 1.89
35 36 0.606604 ACCACGAGAGGCACGTATTT 59.393 50.000 0.00 0.00 42.07 1.40
36 37 1.820519 ACCACGAGAGGCACGTATTTA 59.179 47.619 0.00 0.00 42.07 1.40
37 38 2.190981 CCACGAGAGGCACGTATTTAC 58.809 52.381 0.00 0.00 42.07 2.01
38 39 2.159282 CCACGAGAGGCACGTATTTACT 60.159 50.000 0.00 0.00 42.07 2.24
39 40 3.508762 CACGAGAGGCACGTATTTACTT 58.491 45.455 0.00 0.00 42.07 2.24
40 41 3.546670 CACGAGAGGCACGTATTTACTTC 59.453 47.826 0.00 0.00 42.07 3.01
41 42 2.782192 CGAGAGGCACGTATTTACTTCG 59.218 50.000 0.00 0.00 0.00 3.79
42 43 2.534757 GAGAGGCACGTATTTACTTCGC 59.465 50.000 0.00 0.00 0.00 4.70
43 44 1.254570 GAGGCACGTATTTACTTCGCG 59.745 52.381 0.00 0.00 0.00 5.87
44 45 0.994263 GGCACGTATTTACTTCGCGT 59.006 50.000 5.77 0.00 36.13 6.01
46 47 2.688997 CACGTATTTACTTCGCGTGG 57.311 50.000 5.77 2.41 45.96 4.94
47 48 2.252747 CACGTATTTACTTCGCGTGGA 58.747 47.619 5.77 0.00 45.96 4.02
48 49 2.278094 CACGTATTTACTTCGCGTGGAG 59.722 50.000 5.77 1.72 45.96 3.86
49 50 2.162208 ACGTATTTACTTCGCGTGGAGA 59.838 45.455 12.24 0.00 34.36 3.71
50 51 2.529090 CGTATTTACTTCGCGTGGAGAC 59.471 50.000 12.24 0.00 0.00 3.36
51 52 2.736144 ATTTACTTCGCGTGGAGACA 57.264 45.000 12.24 0.00 38.70 3.41
65 66 4.944962 TGGAGACACGAATTTGCTTATG 57.055 40.909 0.00 0.00 33.40 1.90
66 67 3.126858 TGGAGACACGAATTTGCTTATGC 59.873 43.478 0.00 0.00 35.73 3.14
67 68 3.345714 GAGACACGAATTTGCTTATGCG 58.654 45.455 0.00 0.00 43.34 4.73
68 69 3.000041 AGACACGAATTTGCTTATGCGA 59.000 40.909 6.09 0.00 43.34 5.10
69 70 3.062639 AGACACGAATTTGCTTATGCGAG 59.937 43.478 6.09 1.46 43.34 5.03
70 71 2.095853 ACACGAATTTGCTTATGCGAGG 59.904 45.455 6.09 1.56 43.34 4.63
71 72 2.351418 CACGAATTTGCTTATGCGAGGA 59.649 45.455 6.09 0.00 43.34 3.71
72 73 3.006940 ACGAATTTGCTTATGCGAGGAA 58.993 40.909 6.09 0.00 43.34 3.36
73 74 3.627577 ACGAATTTGCTTATGCGAGGAAT 59.372 39.130 6.09 0.00 43.34 3.01
74 75 3.970610 CGAATTTGCTTATGCGAGGAATG 59.029 43.478 0.00 0.00 43.34 2.67
75 76 3.996150 ATTTGCTTATGCGAGGAATGG 57.004 42.857 0.00 0.00 43.34 3.16
76 77 1.024271 TTGCTTATGCGAGGAATGGC 58.976 50.000 0.00 0.00 43.34 4.40
77 78 0.819259 TGCTTATGCGAGGAATGGCC 60.819 55.000 0.00 0.00 43.34 5.36
78 79 1.845809 GCTTATGCGAGGAATGGCCG 61.846 60.000 0.00 0.00 43.43 6.13
79 80 0.532862 CTTATGCGAGGAATGGCCGT 60.533 55.000 0.00 0.00 43.43 5.68
80 81 0.813610 TTATGCGAGGAATGGCCGTG 60.814 55.000 0.00 0.00 43.43 4.94
91 92 3.758172 GGCCGTGCCTCTCAAAAA 58.242 55.556 7.58 0.00 46.69 1.94
92 93 2.267045 GGCCGTGCCTCTCAAAAAT 58.733 52.632 7.58 0.00 46.69 1.82
93 94 0.109132 GGCCGTGCCTCTCAAAAATG 60.109 55.000 7.58 0.00 46.69 2.32
94 95 0.881118 GCCGTGCCTCTCAAAAATGA 59.119 50.000 0.00 0.00 0.00 2.57
119 120 1.557099 TACTTCTCGTGGAGGCACAT 58.443 50.000 0.00 0.00 0.00 3.21
122 123 3.296854 ACTTCTCGTGGAGGCACATATA 58.703 45.455 0.00 0.00 0.00 0.86
142 143 4.116328 CTTCCGCGAGAGGCACGA 62.116 66.667 8.23 0.00 43.84 4.35
143 144 3.626680 CTTCCGCGAGAGGCACGAA 62.627 63.158 8.23 0.00 43.84 3.85
144 145 3.909258 TTCCGCGAGAGGCACGAAC 62.909 63.158 8.23 0.00 43.84 3.95
153 154 4.338327 GGCACGAACGTGTCTCTT 57.662 55.556 24.28 0.00 46.17 2.85
195 196 2.626840 CCAGTTTGGGTTTTGTTGTGG 58.373 47.619 0.00 0.00 32.67 4.17
198 199 4.512484 CAGTTTGGGTTTTGTTGTGGAAT 58.488 39.130 0.00 0.00 0.00 3.01
199 200 4.940654 CAGTTTGGGTTTTGTTGTGGAATT 59.059 37.500 0.00 0.00 0.00 2.17
248 249 7.685532 TGATCTAATTTTGAATCTCTCGACG 57.314 36.000 0.00 0.00 0.00 5.12
271 272 1.489230 AGGAGTTCCACGGTGAAAACT 59.511 47.619 21.17 21.17 38.89 2.66
276 277 2.404923 TCCACGGTGAAAACTGTTCA 57.595 45.000 10.28 0.00 0.00 3.18
286 287 5.455525 GGTGAAAACTGTTCAAGATTTGACG 59.544 40.000 0.00 0.00 36.20 4.35
287 288 5.034152 TGAAAACTGTTCAAGATTTGACGC 58.966 37.500 0.00 0.00 39.87 5.19
334 335 9.601971 TTTTGAATAAACGAATCTACGGAAAAG 57.398 29.630 0.00 0.00 37.61 2.27
336 337 7.098477 TGAATAAACGAATCTACGGAAAAGGA 58.902 34.615 0.00 0.00 37.61 3.36
337 338 7.603404 TGAATAAACGAATCTACGGAAAAGGAA 59.397 33.333 0.00 0.00 37.61 3.36
343 344 6.073385 ACGAATCTACGGAAAAGGAAAAACTC 60.073 38.462 0.00 0.00 37.61 3.01
351 352 5.109210 GGAAAAGGAAAAACTCACAGGTTG 58.891 41.667 0.00 0.00 0.00 3.77
352 353 4.736126 AAAGGAAAAACTCACAGGTTGG 57.264 40.909 0.00 0.00 0.00 3.77
353 354 2.666317 AGGAAAAACTCACAGGTTGGG 58.334 47.619 0.00 0.00 0.00 4.12
372 377 4.578871 TGGGACAAATGAGTCACATGTAG 58.421 43.478 11.50 0.00 46.37 2.74
384 389 2.135139 CACATGTAGTGCGACACTTGT 58.865 47.619 15.81 11.97 42.59 3.16
385 390 2.155732 CACATGTAGTGCGACACTTGTC 59.844 50.000 15.81 0.00 42.59 3.18
386 391 2.223947 ACATGTAGTGCGACACTTGTCA 60.224 45.455 15.81 13.05 42.59 3.58
395 400 1.800586 CGACACTTGTCACAATCTGGG 59.199 52.381 9.94 0.00 44.99 4.45
398 403 3.480470 ACACTTGTCACAATCTGGGAAG 58.520 45.455 0.00 0.00 27.62 3.46
399 404 3.136443 ACACTTGTCACAATCTGGGAAGA 59.864 43.478 0.00 0.00 27.62 2.87
403 408 2.912295 TGTCACAATCTGGGAAGATGGA 59.088 45.455 0.00 0.00 27.62 3.41
408 413 3.588842 ACAATCTGGGAAGATGGAAGTGA 59.411 43.478 0.00 0.00 0.00 3.41
409 414 3.922171 ATCTGGGAAGATGGAAGTGAC 57.078 47.619 0.00 0.00 0.00 3.67
410 415 2.619931 TCTGGGAAGATGGAAGTGACA 58.380 47.619 0.00 0.00 0.00 3.58
411 416 3.184628 TCTGGGAAGATGGAAGTGACAT 58.815 45.455 0.00 0.00 0.00 3.06
412 417 3.588842 TCTGGGAAGATGGAAGTGACATT 59.411 43.478 0.00 0.00 0.00 2.71
413 418 4.043310 TCTGGGAAGATGGAAGTGACATTT 59.957 41.667 0.00 0.00 0.00 2.32
414 419 4.081406 TGGGAAGATGGAAGTGACATTTG 58.919 43.478 0.00 0.00 0.00 2.32
415 420 3.119352 GGGAAGATGGAAGTGACATTTGC 60.119 47.826 0.00 0.00 0.00 3.68
416 421 3.507233 GGAAGATGGAAGTGACATTTGCA 59.493 43.478 7.33 7.33 0.00 4.08
417 422 4.022068 GGAAGATGGAAGTGACATTTGCAA 60.022 41.667 8.88 0.00 29.63 4.08
418 423 5.509501 GGAAGATGGAAGTGACATTTGCAAA 60.510 40.000 15.44 15.44 29.63 3.68
419 424 5.130292 AGATGGAAGTGACATTTGCAAAG 57.870 39.130 18.19 11.80 29.63 2.77
420 425 4.828939 AGATGGAAGTGACATTTGCAAAGA 59.171 37.500 18.19 0.00 29.63 2.52
421 426 4.572985 TGGAAGTGACATTTGCAAAGAG 57.427 40.909 18.19 14.49 0.00 2.85
422 427 3.953612 TGGAAGTGACATTTGCAAAGAGT 59.046 39.130 18.19 17.54 0.00 3.24
423 428 5.129634 TGGAAGTGACATTTGCAAAGAGTA 58.870 37.500 18.19 1.63 0.00 2.59
424 429 5.008613 TGGAAGTGACATTTGCAAAGAGTAC 59.991 40.000 18.19 13.29 0.00 2.73
425 430 5.239525 GGAAGTGACATTTGCAAAGAGTACT 59.760 40.000 18.19 15.14 0.00 2.73
426 431 6.426937 GGAAGTGACATTTGCAAAGAGTACTA 59.573 38.462 18.19 6.34 0.00 1.82
427 432 7.119846 GGAAGTGACATTTGCAAAGAGTACTAT 59.880 37.037 18.19 9.73 0.00 2.12
428 433 7.986085 AGTGACATTTGCAAAGAGTACTATT 57.014 32.000 18.19 0.00 0.00 1.73
429 434 8.396272 AGTGACATTTGCAAAGAGTACTATTT 57.604 30.769 18.19 9.67 0.00 1.40
430 435 8.850156 AGTGACATTTGCAAAGAGTACTATTTT 58.150 29.630 18.19 5.95 0.00 1.82
431 436 9.463443 GTGACATTTGCAAAGAGTACTATTTTT 57.537 29.630 18.19 3.55 0.00 1.94
449 454 4.605640 TTTTTCCTGAGGGATTGCAAAG 57.394 40.909 1.71 0.00 41.87 2.77
450 455 3.524095 TTTCCTGAGGGATTGCAAAGA 57.476 42.857 1.71 0.00 41.87 2.52
451 456 2.795231 TCCTGAGGGATTGCAAAGAG 57.205 50.000 1.71 0.00 36.57 2.85
452 457 1.988107 TCCTGAGGGATTGCAAAGAGT 59.012 47.619 1.71 0.00 36.57 3.24
453 458 3.181329 TCCTGAGGGATTGCAAAGAGTA 58.819 45.455 1.71 0.00 36.57 2.59
454 459 3.055094 TCCTGAGGGATTGCAAAGAGTAC 60.055 47.826 1.71 0.00 36.57 2.73
455 460 3.274288 CTGAGGGATTGCAAAGAGTACC 58.726 50.000 1.71 0.00 0.00 3.34
456 461 2.642311 TGAGGGATTGCAAAGAGTACCA 59.358 45.455 1.71 0.00 0.00 3.25
457 462 3.010420 GAGGGATTGCAAAGAGTACCAC 58.990 50.000 1.71 0.00 0.00 4.16
458 463 2.644798 AGGGATTGCAAAGAGTACCACT 59.355 45.455 1.71 0.00 0.00 4.00
459 464 3.074538 AGGGATTGCAAAGAGTACCACTT 59.925 43.478 1.71 0.00 0.00 3.16
460 465 4.288626 AGGGATTGCAAAGAGTACCACTTA 59.711 41.667 1.71 0.00 0.00 2.24
461 466 5.007682 GGGATTGCAAAGAGTACCACTTAA 58.992 41.667 1.71 0.00 0.00 1.85
462 467 5.652452 GGGATTGCAAAGAGTACCACTTAAT 59.348 40.000 1.71 1.63 0.00 1.40
463 468 6.826741 GGGATTGCAAAGAGTACCACTTAATA 59.173 38.462 1.71 0.00 0.00 0.98
464 469 7.338449 GGGATTGCAAAGAGTACCACTTAATAA 59.662 37.037 1.71 1.57 0.00 1.40
465 470 8.398665 GGATTGCAAAGAGTACCACTTAATAAG 58.601 37.037 1.71 0.00 0.00 1.73
466 471 8.863872 ATTGCAAAGAGTACCACTTAATAAGT 57.136 30.769 1.71 0.00 44.06 2.24
532 537 1.120437 GCGCTTCGAAACCACTTTTG 58.880 50.000 0.00 0.00 0.00 2.44
591 669 0.775542 TAGCAGGGCCGTCTATAGGA 59.224 55.000 0.00 0.00 0.00 2.94
592 670 0.540830 AGCAGGGCCGTCTATAGGAG 60.541 60.000 0.00 0.00 0.00 3.69
593 671 0.539901 GCAGGGCCGTCTATAGGAGA 60.540 60.000 0.00 0.00 0.00 3.71
594 672 1.540267 CAGGGCCGTCTATAGGAGAG 58.460 60.000 0.00 0.00 33.72 3.20
595 673 1.074084 CAGGGCCGTCTATAGGAGAGA 59.926 57.143 0.00 0.00 33.72 3.10
596 674 1.353022 AGGGCCGTCTATAGGAGAGAG 59.647 57.143 0.00 0.00 33.72 3.20
625 720 1.302832 GGTTCACAGACTGGGCCTG 60.303 63.158 9.11 9.11 37.64 4.85
653 748 2.291605 GGCCCAAATCTAGGTTGAAGGT 60.292 50.000 0.00 0.00 0.00 3.50
656 751 2.755103 CCAAATCTAGGTTGAAGGTGCC 59.245 50.000 8.23 0.00 0.00 5.01
832 929 3.147595 CCCTCGGATCGACCAGCA 61.148 66.667 0.00 0.00 38.90 4.41
988 1085 3.134127 GCTTCCTCGGCGGCAATT 61.134 61.111 10.53 0.00 0.00 2.32
1407 1504 3.454858 TCTTCATCTCCTGGTTAGCCTT 58.545 45.455 0.00 0.00 35.27 4.35
1547 1645 9.838339 TTTATGGTTGTGTTAATTGTGGAAAAT 57.162 25.926 0.00 0.00 0.00 1.82
1591 1689 7.288810 TCTCCAAAAAGATTTATTGCTGTGT 57.711 32.000 0.00 0.00 0.00 3.72
1655 1753 1.353022 CAGTAAAACTGGGGGTGGCTA 59.647 52.381 0.00 0.00 42.35 3.93
1673 1771 3.270877 GCTAACCCCAGTCATTGTACAG 58.729 50.000 0.00 0.00 0.00 2.74
1688 1786 3.390135 TGTACAGTCCTTTCAGCTTTCG 58.610 45.455 0.00 0.00 0.00 3.46
1696 1794 2.225727 CCTTTCAGCTTTCGGTGGTTAC 59.774 50.000 0.00 0.00 39.09 2.50
1697 1795 2.922740 TTCAGCTTTCGGTGGTTACT 57.077 45.000 0.00 0.00 39.09 2.24
1698 1796 2.163818 TCAGCTTTCGGTGGTTACTG 57.836 50.000 0.00 0.00 39.09 2.74
1699 1797 1.156736 CAGCTTTCGGTGGTTACTGG 58.843 55.000 0.00 0.00 35.06 4.00
1700 1798 0.763035 AGCTTTCGGTGGTTACTGGT 59.237 50.000 0.00 0.00 33.84 4.00
1701 1799 1.142262 AGCTTTCGGTGGTTACTGGTT 59.858 47.619 0.00 0.00 33.84 3.67
1702 1800 2.369532 AGCTTTCGGTGGTTACTGGTTA 59.630 45.455 0.00 0.00 33.84 2.85
1758 1856 8.405531 GTCCAATAAGCATTATGTTTCAAGCTA 58.594 33.333 0.00 0.00 41.21 3.32
1767 1865 1.950909 TGTTTCAAGCTAACCCAACGG 59.049 47.619 0.00 0.00 0.00 4.44
1783 1881 4.258543 CCAACGGCCAACTTAATTCTCTA 58.741 43.478 2.24 0.00 0.00 2.43
1784 1882 4.698304 CCAACGGCCAACTTAATTCTCTAA 59.302 41.667 2.24 0.00 0.00 2.10
1785 1883 5.357032 CCAACGGCCAACTTAATTCTCTAAT 59.643 40.000 2.24 0.00 0.00 1.73
1833 1931 3.410631 TTCCATGTAACCTCGCAAAGA 57.589 42.857 0.00 0.00 0.00 2.52
1848 1946 3.670627 CGCAAAGATAACAGCAAAGGGAC 60.671 47.826 0.00 0.00 0.00 4.46
1919 2017 5.592282 TGCACTTGACAATCCTTTTCAGTTA 59.408 36.000 0.00 0.00 0.00 2.24
1966 2064 6.374333 AGACAAGAATGTTTGTGTACACAGTT 59.626 34.615 26.52 19.35 41.15 3.16
1983 2081 7.154435 ACACAGTTCACTAGTAATCGTGTAT 57.846 36.000 12.79 0.00 33.59 2.29
1988 2086 5.570234 TCACTAGTAATCGTGTATGTGCA 57.430 39.130 0.00 0.00 33.07 4.57
2210 2310 6.605594 ACTGAATACCTGGTTTTCTGTTTCAA 59.394 34.615 25.53 9.15 34.31 2.69
2240 2340 5.304686 AGGGTATTCTTGTCAGTTGTCAA 57.695 39.130 0.00 0.00 0.00 3.18
2308 2408 4.625607 TCTCTTTCTTTTCAGGTCTCCC 57.374 45.455 0.00 0.00 0.00 4.30
2434 2534 2.738846 CGACATGGACTTGGAAGTTCTG 59.261 50.000 2.25 0.00 39.88 3.02
2746 2850 6.634436 CAGTTTTGTTGAGCTTAAACTGCTAG 59.366 38.462 17.93 0.00 45.76 3.42
2763 2867 2.618709 GCTAGTGCTCAGTGGTTTTGTT 59.381 45.455 0.00 0.00 36.03 2.83
2764 2868 3.304057 GCTAGTGCTCAGTGGTTTTGTTC 60.304 47.826 0.00 0.00 36.03 3.18
2766 2870 2.684881 AGTGCTCAGTGGTTTTGTTCTG 59.315 45.455 0.00 0.00 0.00 3.02
2801 2916 4.913335 ATGAATGTCCAGTGAATCATGC 57.087 40.909 0.00 0.00 0.00 4.06
2804 2919 2.865119 TGTCCAGTGAATCATGCAGT 57.135 45.000 0.00 0.00 0.00 4.40
2965 3082 3.909732 TGTCCTTTGATGTTTTCCCTGT 58.090 40.909 0.00 0.00 0.00 4.00
2966 3083 4.285863 TGTCCTTTGATGTTTTCCCTGTT 58.714 39.130 0.00 0.00 0.00 3.16
2967 3084 4.714308 TGTCCTTTGATGTTTTCCCTGTTT 59.286 37.500 0.00 0.00 0.00 2.83
2997 3114 7.995463 TTACATTAAAACAGACTTGGCAAAC 57.005 32.000 0.00 0.00 0.00 2.93
3006 3123 4.400884 ACAGACTTGGCAAACATACAAACA 59.599 37.500 0.00 0.00 0.00 2.83
3074 3193 9.683069 CAATATTAGCAGTTGTTTTGACTTTCT 57.317 29.630 0.00 0.00 0.00 2.52
3213 3335 3.896122 TGTTATCGTTTGGCTTTGCTTC 58.104 40.909 0.00 0.00 0.00 3.86
3252 3375 6.049790 GCCAGGATTAGGTGTTTTAGACTAG 58.950 44.000 0.00 0.00 0.00 2.57
3255 3378 6.973474 CAGGATTAGGTGTTTTAGACTAGTCG 59.027 42.308 17.07 0.00 34.09 4.18
3259 3382 3.257624 AGGTGTTTTAGACTAGTCGGTGG 59.742 47.826 17.07 0.00 34.09 4.61
3268 3397 1.874345 CTAGTCGGTGGTTCGTGCCT 61.874 60.000 0.40 0.00 0.00 4.75
3275 3404 2.144078 TGGTTCGTGCCTTCCCAGA 61.144 57.895 0.40 0.00 0.00 3.86
3276 3405 1.072505 GGTTCGTGCCTTCCCAGAA 59.927 57.895 0.00 0.00 0.00 3.02
3278 3407 1.065709 GGTTCGTGCCTTCCCAGAATA 60.066 52.381 0.00 0.00 0.00 1.75
3304 3436 7.602517 TTTCTTAAATTGCTACTCTCTCAGC 57.397 36.000 0.00 0.00 38.31 4.26
3305 3437 5.665459 TCTTAAATTGCTACTCTCTCAGCC 58.335 41.667 0.00 0.00 36.95 4.85
3306 3438 2.998316 AATTGCTACTCTCTCAGCCC 57.002 50.000 0.00 0.00 36.95 5.19
3307 3439 1.127343 ATTGCTACTCTCTCAGCCCC 58.873 55.000 0.00 0.00 36.95 5.80
3308 3440 0.252239 TTGCTACTCTCTCAGCCCCA 60.252 55.000 0.00 0.00 36.95 4.96
3309 3441 0.031716 TGCTACTCTCTCAGCCCCAT 60.032 55.000 0.00 0.00 36.95 4.00
3310 3442 1.217942 TGCTACTCTCTCAGCCCCATA 59.782 52.381 0.00 0.00 36.95 2.74
3311 3443 2.320781 GCTACTCTCTCAGCCCCATAA 58.679 52.381 0.00 0.00 0.00 1.90
3312 3444 2.903135 GCTACTCTCTCAGCCCCATAAT 59.097 50.000 0.00 0.00 0.00 1.28
3313 3445 4.090090 GCTACTCTCTCAGCCCCATAATA 58.910 47.826 0.00 0.00 0.00 0.98
3314 3446 4.714308 GCTACTCTCTCAGCCCCATAATAT 59.286 45.833 0.00 0.00 0.00 1.28
3315 3447 5.894393 GCTACTCTCTCAGCCCCATAATATA 59.106 44.000 0.00 0.00 0.00 0.86
3316 3448 6.381420 GCTACTCTCTCAGCCCCATAATATAA 59.619 42.308 0.00 0.00 0.00 0.98
3317 3449 6.865834 ACTCTCTCAGCCCCATAATATAAG 57.134 41.667 0.00 0.00 0.00 1.73
3318 3450 6.565974 ACTCTCTCAGCCCCATAATATAAGA 58.434 40.000 0.00 0.00 0.00 2.10
3319 3451 6.667414 ACTCTCTCAGCCCCATAATATAAGAG 59.333 42.308 0.00 0.00 33.36 2.85
3320 3452 6.565974 TCTCTCAGCCCCATAATATAAGAGT 58.434 40.000 0.00 0.00 31.80 3.24
3321 3453 6.438741 TCTCTCAGCCCCATAATATAAGAGTG 59.561 42.308 0.00 0.00 31.80 3.51
3322 3454 6.084738 TCTCAGCCCCATAATATAAGAGTGT 58.915 40.000 0.00 0.00 0.00 3.55
3323 3455 6.558775 TCTCAGCCCCATAATATAAGAGTGTT 59.441 38.462 0.00 0.00 0.00 3.32
3324 3456 7.072454 TCTCAGCCCCATAATATAAGAGTGTTT 59.928 37.037 0.00 0.00 0.00 2.83
3325 3457 7.224297 TCAGCCCCATAATATAAGAGTGTTTC 58.776 38.462 0.00 0.00 0.00 2.78
3326 3458 7.072454 TCAGCCCCATAATATAAGAGTGTTTCT 59.928 37.037 0.00 0.00 37.93 2.52
3327 3459 7.173907 CAGCCCCATAATATAAGAGTGTTTCTG 59.826 40.741 0.00 0.00 35.91 3.02
3328 3460 7.072454 AGCCCCATAATATAAGAGTGTTTCTGA 59.928 37.037 0.00 0.00 35.91 3.27
3329 3461 7.173390 GCCCCATAATATAAGAGTGTTTCTGAC 59.827 40.741 0.00 0.00 35.91 3.51
3330 3462 8.210946 CCCCATAATATAAGAGTGTTTCTGACA 58.789 37.037 0.00 0.00 35.91 3.58
3343 3475 6.413783 TGTTTCTGACACTAGTGTAATGGA 57.586 37.500 27.98 18.75 45.05 3.41
3344 3476 6.455647 TGTTTCTGACACTAGTGTAATGGAG 58.544 40.000 27.98 17.30 45.05 3.86
3345 3477 6.041637 TGTTTCTGACACTAGTGTAATGGAGT 59.958 38.462 27.98 3.07 45.05 3.85
3346 3478 7.231925 TGTTTCTGACACTAGTGTAATGGAGTA 59.768 37.037 27.98 10.20 45.05 2.59
3347 3479 7.770366 TTCTGACACTAGTGTAATGGAGTAA 57.230 36.000 27.98 11.12 45.05 2.24
3348 3480 7.154435 TCTGACACTAGTGTAATGGAGTAAC 57.846 40.000 27.98 12.10 45.05 2.50
3349 3481 6.717997 TCTGACACTAGTGTAATGGAGTAACA 59.282 38.462 27.98 15.77 45.05 2.41
3350 3482 7.231925 TCTGACACTAGTGTAATGGAGTAACAA 59.768 37.037 27.98 6.64 45.05 2.83
3351 3483 7.728148 TGACACTAGTGTAATGGAGTAACAAA 58.272 34.615 27.98 0.00 45.05 2.83
3352 3484 7.654520 TGACACTAGTGTAATGGAGTAACAAAC 59.345 37.037 27.98 10.38 45.05 2.93
3353 3485 7.502696 ACACTAGTGTAATGGAGTAACAAACA 58.497 34.615 26.91 0.00 42.90 2.83
3354 3486 7.988599 ACACTAGTGTAATGGAGTAACAAACAA 59.011 33.333 26.91 0.00 42.90 2.83
3355 3487 8.495949 CACTAGTGTAATGGAGTAACAAACAAG 58.504 37.037 15.06 0.00 0.00 3.16
3356 3488 8.208903 ACTAGTGTAATGGAGTAACAAACAAGT 58.791 33.333 0.00 0.00 0.00 3.16
3357 3489 9.701098 CTAGTGTAATGGAGTAACAAACAAGTA 57.299 33.333 0.00 0.00 0.00 2.24
3358 3490 8.374327 AGTGTAATGGAGTAACAAACAAGTAC 57.626 34.615 0.00 0.00 0.00 2.73
3359 3491 8.208903 AGTGTAATGGAGTAACAAACAAGTACT 58.791 33.333 0.00 0.00 0.00 2.73
3360 3492 8.493547 GTGTAATGGAGTAACAAACAAGTACTC 58.506 37.037 0.00 0.00 37.13 2.59
3363 3495 5.224821 GGAGTAACAAACAAGTACTCCCT 57.775 43.478 15.29 0.00 46.72 4.20
3364 3496 5.236282 GGAGTAACAAACAAGTACTCCCTC 58.764 45.833 15.29 0.00 46.72 4.30
3365 3497 5.224821 AGTAACAAACAAGTACTCCCTCC 57.775 43.478 0.00 0.00 0.00 4.30
3366 3498 2.833631 ACAAACAAGTACTCCCTCCG 57.166 50.000 0.00 0.00 0.00 4.63
3367 3499 2.044758 ACAAACAAGTACTCCCTCCGT 58.955 47.619 0.00 0.00 0.00 4.69
3368 3500 2.036862 ACAAACAAGTACTCCCTCCGTC 59.963 50.000 0.00 0.00 0.00 4.79
3369 3501 1.264295 AACAAGTACTCCCTCCGTCC 58.736 55.000 0.00 0.00 0.00 4.79
3370 3502 0.614134 ACAAGTACTCCCTCCGTCCC 60.614 60.000 0.00 0.00 0.00 4.46
3371 3503 0.613853 CAAGTACTCCCTCCGTCCCA 60.614 60.000 0.00 0.00 0.00 4.37
3372 3504 0.115745 AAGTACTCCCTCCGTCCCAA 59.884 55.000 0.00 0.00 0.00 4.12
3373 3505 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
3374 3506 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
3375 3507 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
3376 3508 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
3377 3509 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
3378 3510 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
3379 3511 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
3380 3512 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
3381 3513 2.026636 CCCTCCGTCCCAAAATAAGTGA 60.027 50.000 0.00 0.00 0.00 3.41
3382 3514 3.007635 CCTCCGTCCCAAAATAAGTGAC 58.992 50.000 0.00 0.00 0.00 3.67
3383 3515 3.307480 CCTCCGTCCCAAAATAAGTGACT 60.307 47.826 0.00 0.00 0.00 3.41
3384 3516 3.933332 CTCCGTCCCAAAATAAGTGACTC 59.067 47.826 0.00 0.00 0.00 3.36
3385 3517 3.325425 TCCGTCCCAAAATAAGTGACTCA 59.675 43.478 0.00 0.00 0.00 3.41
3386 3518 4.069304 CCGTCCCAAAATAAGTGACTCAA 58.931 43.478 0.00 0.00 0.00 3.02
3387 3519 4.517453 CCGTCCCAAAATAAGTGACTCAAA 59.483 41.667 0.00 0.00 0.00 2.69
3388 3520 5.009210 CCGTCCCAAAATAAGTGACTCAAAA 59.991 40.000 0.00 0.00 0.00 2.44
3389 3521 6.142817 CGTCCCAAAATAAGTGACTCAAAAG 58.857 40.000 0.00 0.00 0.00 2.27
3390 3522 6.238648 CGTCCCAAAATAAGTGACTCAAAAGT 60.239 38.462 0.00 0.00 38.88 2.66
3391 3523 6.918022 GTCCCAAAATAAGTGACTCAAAAGTG 59.082 38.462 0.00 0.00 35.28 3.16
3392 3524 6.831353 TCCCAAAATAAGTGACTCAAAAGTGA 59.169 34.615 0.00 0.00 35.28 3.41
3411 3543 8.788325 AAAGTGAGTCAACTTTGTACTAAAGT 57.212 30.769 15.47 14.04 46.16 2.66
3412 3544 9.227777 AAAGTGAGTCAACTTTGTACTAAAGTT 57.772 29.630 20.78 20.78 46.16 2.66
3413 3545 9.880157 AAGTGAGTCAACTTTGTACTAAAGTTA 57.120 29.630 23.56 15.10 45.57 2.24
3414 3546 9.530633 AGTGAGTCAACTTTGTACTAAAGTTAG 57.469 33.333 23.56 19.42 45.57 2.34
3415 3547 9.310716 GTGAGTCAACTTTGTACTAAAGTTAGT 57.689 33.333 23.56 17.66 45.57 2.24
3436 3568 9.997482 GTTAGTACAAAGTTGAGTCATTTTTGA 57.003 29.630 24.96 13.02 33.98 2.69
3438 3570 8.281212 AGTACAAAGTTGAGTCATTTTTGAGT 57.719 30.769 24.96 13.32 33.98 3.41
3439 3571 8.398665 AGTACAAAGTTGAGTCATTTTTGAGTC 58.601 33.333 24.96 17.22 38.42 3.36
3440 3572 7.156876 ACAAAGTTGAGTCATTTTTGAGTCA 57.843 32.000 24.96 8.96 43.96 3.41
3441 3573 7.029563 ACAAAGTTGAGTCATTTTTGAGTCAC 58.970 34.615 24.96 6.53 44.92 3.67
3442 3574 7.094205 ACAAAGTTGAGTCATTTTTGAGTCACT 60.094 33.333 24.96 8.36 44.92 3.41
3443 3575 7.396540 AAGTTGAGTCATTTTTGAGTCACTT 57.603 32.000 11.91 13.95 44.92 3.16
3444 3576 8.506168 AAGTTGAGTCATTTTTGAGTCACTTA 57.494 30.769 11.91 0.00 44.92 2.24
3445 3577 8.682936 AGTTGAGTCATTTTTGAGTCACTTAT 57.317 30.769 11.91 0.00 44.92 1.73
3446 3578 9.125026 AGTTGAGTCATTTTTGAGTCACTTATT 57.875 29.630 11.91 0.00 44.92 1.40
3447 3579 9.736023 GTTGAGTCATTTTTGAGTCACTTATTT 57.264 29.630 11.91 0.00 44.92 1.40
3454 3586 9.329913 CATTTTTGAGTCACTTATTTTAGGACG 57.670 33.333 0.00 0.00 33.84 4.79
3455 3587 8.665643 TTTTTGAGTCACTTATTTTAGGACGA 57.334 30.769 0.00 0.00 33.84 4.20
3456 3588 8.665643 TTTTGAGTCACTTATTTTAGGACGAA 57.334 30.769 0.00 0.00 33.84 3.85
3457 3589 7.884816 TTGAGTCACTTATTTTAGGACGAAG 57.115 36.000 0.00 0.00 33.84 3.79
3458 3590 6.395629 TGAGTCACTTATTTTAGGACGAAGG 58.604 40.000 0.00 0.00 33.84 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 2.762745 GTGCCTCTCGTGGTAGAAAAA 58.237 47.619 0.00 0.00 0.00 1.94
10 11 1.336517 CGTGCCTCTCGTGGTAGAAAA 60.337 52.381 0.00 0.00 0.00 2.29
11 12 0.242825 CGTGCCTCTCGTGGTAGAAA 59.757 55.000 0.00 0.00 0.00 2.52
12 13 0.892358 ACGTGCCTCTCGTGGTAGAA 60.892 55.000 0.00 0.00 40.07 2.10
13 14 0.036105 TACGTGCCTCTCGTGGTAGA 60.036 55.000 0.00 0.00 41.62 2.59
14 15 1.022735 ATACGTGCCTCTCGTGGTAG 58.977 55.000 0.00 0.00 41.62 3.18
15 16 1.466856 AATACGTGCCTCTCGTGGTA 58.533 50.000 0.00 0.00 41.62 3.25
16 17 0.606604 AAATACGTGCCTCTCGTGGT 59.393 50.000 0.00 0.00 41.62 4.16
17 18 2.159282 AGTAAATACGTGCCTCTCGTGG 60.159 50.000 0.00 0.00 41.62 4.94
18 19 3.146618 AGTAAATACGTGCCTCTCGTG 57.853 47.619 0.00 0.00 41.62 4.35
19 20 3.730061 CGAAGTAAATACGTGCCTCTCGT 60.730 47.826 0.00 0.00 43.86 4.18
20 21 2.782192 CGAAGTAAATACGTGCCTCTCG 59.218 50.000 0.00 0.00 0.00 4.04
21 22 2.534757 GCGAAGTAAATACGTGCCTCTC 59.465 50.000 0.00 0.00 0.00 3.20
22 23 2.537401 GCGAAGTAAATACGTGCCTCT 58.463 47.619 0.00 0.00 0.00 3.69
23 24 1.254570 CGCGAAGTAAATACGTGCCTC 59.745 52.381 0.00 0.00 0.00 4.70
24 25 1.274596 CGCGAAGTAAATACGTGCCT 58.725 50.000 0.00 0.00 0.00 4.75
25 26 0.994263 ACGCGAAGTAAATACGTGCC 59.006 50.000 15.93 0.00 40.41 5.01
26 27 2.053752 CACGCGAAGTAAATACGTGC 57.946 50.000 15.93 0.00 46.11 5.34
28 29 2.162208 TCTCCACGCGAAGTAAATACGT 59.838 45.455 15.93 0.00 37.47 3.57
29 30 2.529090 GTCTCCACGCGAAGTAAATACG 59.471 50.000 15.93 0.00 0.00 3.06
30 31 3.302699 GTGTCTCCACGCGAAGTAAATAC 59.697 47.826 15.93 0.71 0.00 1.89
31 32 3.504863 GTGTCTCCACGCGAAGTAAATA 58.495 45.455 15.93 0.00 0.00 1.40
32 33 2.334838 GTGTCTCCACGCGAAGTAAAT 58.665 47.619 15.93 0.00 0.00 1.40
33 34 1.774639 GTGTCTCCACGCGAAGTAAA 58.225 50.000 15.93 0.00 0.00 2.01
34 35 3.484524 GTGTCTCCACGCGAAGTAA 57.515 52.632 15.93 0.00 0.00 2.24
43 44 4.651994 CATAAGCAAATTCGTGTCTCCAC 58.348 43.478 0.00 0.00 38.27 4.02
44 45 3.126858 GCATAAGCAAATTCGTGTCTCCA 59.873 43.478 0.00 0.00 41.58 3.86
45 46 3.685058 GCATAAGCAAATTCGTGTCTCC 58.315 45.455 0.00 0.00 41.58 3.71
46 47 3.062099 TCGCATAAGCAAATTCGTGTCTC 59.938 43.478 0.00 0.00 42.27 3.36
47 48 3.000041 TCGCATAAGCAAATTCGTGTCT 59.000 40.909 0.00 0.00 42.27 3.41
48 49 3.345714 CTCGCATAAGCAAATTCGTGTC 58.654 45.455 0.00 0.00 42.27 3.67
49 50 2.095853 CCTCGCATAAGCAAATTCGTGT 59.904 45.455 0.00 0.00 42.27 4.49
50 51 2.351418 TCCTCGCATAAGCAAATTCGTG 59.649 45.455 0.00 0.00 42.27 4.35
51 52 2.627945 TCCTCGCATAAGCAAATTCGT 58.372 42.857 0.00 0.00 42.27 3.85
52 53 3.673746 TTCCTCGCATAAGCAAATTCG 57.326 42.857 0.00 0.00 42.27 3.34
53 54 4.293415 CCATTCCTCGCATAAGCAAATTC 58.707 43.478 0.00 0.00 42.27 2.17
54 55 3.491447 GCCATTCCTCGCATAAGCAAATT 60.491 43.478 0.00 0.00 42.27 1.82
55 56 2.035066 GCCATTCCTCGCATAAGCAAAT 59.965 45.455 0.00 0.00 42.27 2.32
56 57 1.405105 GCCATTCCTCGCATAAGCAAA 59.595 47.619 0.00 0.00 42.27 3.68
57 58 1.024271 GCCATTCCTCGCATAAGCAA 58.976 50.000 0.00 0.00 42.27 3.91
58 59 0.819259 GGCCATTCCTCGCATAAGCA 60.819 55.000 0.00 0.00 42.27 3.91
59 60 1.845809 CGGCCATTCCTCGCATAAGC 61.846 60.000 2.24 0.00 37.42 3.09
60 61 0.532862 ACGGCCATTCCTCGCATAAG 60.533 55.000 2.24 0.00 0.00 1.73
61 62 0.813610 CACGGCCATTCCTCGCATAA 60.814 55.000 2.24 0.00 0.00 1.90
62 63 1.227527 CACGGCCATTCCTCGCATA 60.228 57.895 2.24 0.00 0.00 3.14
63 64 2.514592 CACGGCCATTCCTCGCAT 60.515 61.111 2.24 0.00 0.00 4.73
75 76 0.881118 TCATTTTTGAGAGGCACGGC 59.119 50.000 0.00 0.00 0.00 5.68
76 77 3.641437 TTTCATTTTTGAGAGGCACGG 57.359 42.857 0.00 0.00 0.00 4.94
77 78 6.529463 AAATTTTCATTTTTGAGAGGCACG 57.471 33.333 0.00 0.00 0.00 5.34
78 79 8.593492 AGTAAATTTTCATTTTTGAGAGGCAC 57.407 30.769 0.00 0.00 34.29 5.01
79 80 9.260002 GAAGTAAATTTTCATTTTTGAGAGGCA 57.740 29.630 0.00 0.00 34.29 4.75
80 81 9.481340 AGAAGTAAATTTTCATTTTTGAGAGGC 57.519 29.630 0.00 0.00 34.29 4.70
85 86 9.243637 CCACGAGAAGTAAATTTTCATTTTTGA 57.756 29.630 0.00 0.00 34.29 2.69
86 87 9.243637 TCCACGAGAAGTAAATTTTCATTTTTG 57.756 29.630 0.00 0.00 34.29 2.44
87 88 9.463443 CTCCACGAGAAGTAAATTTTCATTTTT 57.537 29.630 0.00 0.00 34.29 1.94
88 89 8.082242 CCTCCACGAGAAGTAAATTTTCATTTT 58.918 33.333 0.00 0.00 34.29 1.82
89 90 7.593825 CCTCCACGAGAAGTAAATTTTCATTT 58.406 34.615 0.00 0.00 36.52 2.32
90 91 6.349363 GCCTCCACGAGAAGTAAATTTTCATT 60.349 38.462 0.00 0.00 0.00 2.57
91 92 5.123979 GCCTCCACGAGAAGTAAATTTTCAT 59.876 40.000 0.00 0.00 0.00 2.57
92 93 4.454504 GCCTCCACGAGAAGTAAATTTTCA 59.545 41.667 0.00 0.00 0.00 2.69
93 94 4.454504 TGCCTCCACGAGAAGTAAATTTTC 59.545 41.667 0.00 0.00 0.00 2.29
94 95 4.215613 GTGCCTCCACGAGAAGTAAATTTT 59.784 41.667 0.00 0.00 31.34 1.82
142 143 1.766496 TCCCTTTCCAAGAGACACGTT 59.234 47.619 0.00 0.00 0.00 3.99
143 144 1.420430 TCCCTTTCCAAGAGACACGT 58.580 50.000 0.00 0.00 0.00 4.49
144 145 2.543777 TTCCCTTTCCAAGAGACACG 57.456 50.000 0.00 0.00 0.00 4.49
163 164 3.473923 CCAAACTGGGAGCATGTTTTT 57.526 42.857 0.00 0.00 32.67 1.94
177 178 4.835284 ATTCCACAACAAAACCCAAACT 57.165 36.364 0.00 0.00 0.00 2.66
178 179 5.888691 AAATTCCACAACAAAACCCAAAC 57.111 34.783 0.00 0.00 0.00 2.93
231 232 2.876091 TCGCGTCGAGAGATTCAAAAT 58.124 42.857 5.77 0.00 45.19 1.82
253 254 2.285977 ACAGTTTTCACCGTGGAACTC 58.714 47.619 14.47 3.15 30.41 3.01
255 256 2.420722 TGAACAGTTTTCACCGTGGAAC 59.579 45.455 0.00 4.85 0.00 3.62
257 258 2.404923 TGAACAGTTTTCACCGTGGA 57.595 45.000 0.00 0.00 0.00 4.02
258 259 2.680841 TCTTGAACAGTTTTCACCGTGG 59.319 45.455 0.00 0.00 0.00 4.94
262 263 5.455525 CGTCAAATCTTGAACAGTTTTCACC 59.544 40.000 0.00 0.00 42.15 4.02
263 264 5.052370 GCGTCAAATCTTGAACAGTTTTCAC 60.052 40.000 0.00 0.00 42.15 3.18
271 272 1.262950 CCGTGCGTCAAATCTTGAACA 59.737 47.619 0.00 0.00 42.15 3.18
276 277 1.944024 TCAAACCGTGCGTCAAATCTT 59.056 42.857 0.00 0.00 0.00 2.40
286 287 8.798153 CAAAATATTTTATCTCTCAAACCGTGC 58.202 33.333 12.98 0.00 0.00 5.34
329 330 5.109210 CCAACCTGTGAGTTTTTCCTTTTC 58.891 41.667 0.00 0.00 0.00 2.29
334 335 2.361119 GTCCCAACCTGTGAGTTTTTCC 59.639 50.000 0.00 0.00 0.00 3.13
336 337 3.094484 TGTCCCAACCTGTGAGTTTTT 57.906 42.857 0.00 0.00 0.00 1.94
337 338 2.818751 TGTCCCAACCTGTGAGTTTT 57.181 45.000 0.00 0.00 0.00 2.43
343 344 2.554032 GACTCATTTGTCCCAACCTGTG 59.446 50.000 0.00 0.00 0.00 3.66
351 352 4.579869 ACTACATGTGACTCATTTGTCCC 58.420 43.478 9.11 0.00 36.21 4.46
378 383 3.743521 TCTTCCCAGATTGTGACAAGTG 58.256 45.455 3.74 3.91 0.00 3.16
379 384 4.330250 CATCTTCCCAGATTGTGACAAGT 58.670 43.478 3.74 0.00 37.71 3.16
384 389 3.588842 ACTTCCATCTTCCCAGATTGTGA 59.411 43.478 0.00 0.00 37.71 3.58
385 390 3.693085 CACTTCCATCTTCCCAGATTGTG 59.307 47.826 0.00 0.00 37.71 3.33
386 391 3.588842 TCACTTCCATCTTCCCAGATTGT 59.411 43.478 0.00 0.00 37.71 2.71
395 400 4.771590 TGCAAATGTCACTTCCATCTTC 57.228 40.909 0.00 0.00 0.00 2.87
398 403 5.125100 TCTTTGCAAATGTCACTTCCATC 57.875 39.130 13.23 0.00 0.00 3.51
399 404 4.586001 ACTCTTTGCAAATGTCACTTCCAT 59.414 37.500 13.23 0.00 0.00 3.41
403 408 7.986085 ATAGTACTCTTTGCAAATGTCACTT 57.014 32.000 13.23 0.00 0.00 3.16
433 438 2.503895 ACTCTTTGCAATCCCTCAGG 57.496 50.000 0.00 0.00 0.00 3.86
434 439 3.274288 GGTACTCTTTGCAATCCCTCAG 58.726 50.000 0.00 0.00 0.00 3.35
435 440 2.642311 TGGTACTCTTTGCAATCCCTCA 59.358 45.455 0.00 0.00 0.00 3.86
436 441 3.010420 GTGGTACTCTTTGCAATCCCTC 58.990 50.000 0.00 0.00 0.00 4.30
437 442 2.644798 AGTGGTACTCTTTGCAATCCCT 59.355 45.455 0.00 0.00 0.00 4.20
438 443 3.073274 AGTGGTACTCTTTGCAATCCC 57.927 47.619 0.00 0.00 0.00 3.85
439 444 6.759497 ATTAAGTGGTACTCTTTGCAATCC 57.241 37.500 0.00 0.00 39.27 3.01
440 445 8.947115 ACTTATTAAGTGGTACTCTTTGCAATC 58.053 33.333 8.27 0.00 39.27 2.67
441 446 8.863872 ACTTATTAAGTGGTACTCTTTGCAAT 57.136 30.769 8.27 0.00 39.27 3.56
456 461 8.934023 TGGTTCTCCAAAATCACTTATTAAGT 57.066 30.769 3.16 3.16 40.89 2.24
532 537 8.144478 GGCCCAATAGAAAGATTATTTTCTTCC 58.856 37.037 6.35 0.00 43.08 3.46
591 669 6.948886 TCTGTGAACCAAATAGTAGTCTCTCT 59.051 38.462 0.00 0.00 0.00 3.10
592 670 7.030768 GTCTGTGAACCAAATAGTAGTCTCTC 58.969 42.308 0.00 0.00 0.00 3.20
593 671 6.722129 AGTCTGTGAACCAAATAGTAGTCTCT 59.278 38.462 0.00 0.00 0.00 3.10
594 672 6.809196 CAGTCTGTGAACCAAATAGTAGTCTC 59.191 42.308 0.00 0.00 0.00 3.36
595 673 6.295349 CCAGTCTGTGAACCAAATAGTAGTCT 60.295 42.308 0.00 0.00 0.00 3.24
596 674 5.869888 CCAGTCTGTGAACCAAATAGTAGTC 59.130 44.000 0.00 0.00 0.00 2.59
625 720 3.365472 ACCTAGATTTGGGCCATCAAAC 58.635 45.455 7.26 0.00 39.13 2.93
653 748 1.573829 GCGTCCAGTTGAAATCGGCA 61.574 55.000 0.00 0.00 0.00 5.69
656 751 1.419922 CCGCGTCCAGTTGAAATCG 59.580 57.895 4.92 0.00 0.00 3.34
909 1006 1.600916 GTGGGAACTCACCAGGCAC 60.601 63.158 0.00 0.00 39.00 5.01
943 1040 1.701603 GGGTTAAAAGGGGAGGGGG 59.298 63.158 0.00 0.00 0.00 5.40
1407 1504 0.555769 AACAGGGGGCAAGAAAGACA 59.444 50.000 0.00 0.00 0.00 3.41
1591 1689 4.276431 CCCCTTCGCTGTTTAAGTGTTTAA 59.724 41.667 0.00 0.00 37.67 1.52
1655 1753 2.039879 GGACTGTACAATGACTGGGGTT 59.960 50.000 0.00 0.00 0.00 4.11
1673 1771 0.875059 CCACCGAAAGCTGAAAGGAC 59.125 55.000 5.00 0.00 0.00 3.85
1688 1786 3.994931 ACATCCTAACCAGTAACCACC 57.005 47.619 0.00 0.00 0.00 4.61
1696 1794 2.794910 CGCGTATGAACATCCTAACCAG 59.205 50.000 0.00 0.00 0.00 4.00
1697 1795 2.166870 ACGCGTATGAACATCCTAACCA 59.833 45.455 11.67 0.00 0.00 3.67
1698 1796 2.817901 ACGCGTATGAACATCCTAACC 58.182 47.619 11.67 0.00 0.00 2.85
1699 1797 4.799949 TGTAACGCGTATGAACATCCTAAC 59.200 41.667 14.46 0.00 0.00 2.34
1700 1798 4.996344 TGTAACGCGTATGAACATCCTAA 58.004 39.130 14.46 0.00 0.00 2.69
1701 1799 4.635833 TGTAACGCGTATGAACATCCTA 57.364 40.909 14.46 0.00 0.00 2.94
1702 1800 3.513680 TGTAACGCGTATGAACATCCT 57.486 42.857 14.46 0.00 0.00 3.24
1758 1856 2.003937 ATTAAGTTGGCCGTTGGGTT 57.996 45.000 0.00 0.00 34.97 4.11
1816 1914 5.727791 GCTGTTATCTTTGCGAGGTTACATG 60.728 44.000 0.00 0.00 0.00 3.21
1817 1915 4.332819 GCTGTTATCTTTGCGAGGTTACAT 59.667 41.667 0.00 0.00 0.00 2.29
1833 1931 4.839121 TGTATTCGTCCCTTTGCTGTTAT 58.161 39.130 0.00 0.00 0.00 1.89
1848 1946 7.589587 TGTTACTGAATTGCACTTTTGTATTCG 59.410 33.333 0.00 0.00 32.71 3.34
1966 2064 5.570234 TGCACATACACGATTACTAGTGA 57.430 39.130 5.39 0.00 40.56 3.41
1988 2086 6.659745 TCCTACCTAATATACACGTGCATT 57.340 37.500 17.22 14.70 0.00 3.56
2083 2181 4.955811 ACGCTATCCCATGAAATCTACA 57.044 40.909 0.00 0.00 0.00 2.74
2202 2302 9.981114 AAGAATACCCTACAAAAATTGAAACAG 57.019 29.630 0.00 0.00 0.00 3.16
2210 2310 8.576442 CAACTGACAAGAATACCCTACAAAAAT 58.424 33.333 0.00 0.00 0.00 1.82
2308 2408 0.780596 CACGGATGCGAGAATCATCG 59.219 55.000 15.49 0.00 45.48 3.84
2434 2534 2.223994 GGTTCTATTAGCACGGACCCTC 60.224 54.545 0.00 0.00 0.00 4.30
2710 2813 5.507985 GCTCAACAAAACTGTTGCTTAGGAT 60.508 40.000 12.13 0.00 46.21 3.24
2746 2850 2.223572 CCAGAACAAAACCACTGAGCAC 60.224 50.000 0.00 0.00 32.90 4.40
2780 2895 4.274978 TGCATGATTCACTGGACATTCAT 58.725 39.130 0.00 0.00 0.00 2.57
2979 3096 6.701145 TGTATGTTTGCCAAGTCTGTTTTA 57.299 33.333 0.00 0.00 0.00 1.52
3006 3123 8.563732 GCTCTCTCTAAAGACAAAGAAAAACAT 58.436 33.333 0.00 0.00 0.00 2.71
3074 3193 6.217900 TGTGGGGGAAAAGGACAATAGTATTA 59.782 38.462 0.00 0.00 0.00 0.98
3076 3195 4.542525 TGTGGGGGAAAAGGACAATAGTAT 59.457 41.667 0.00 0.00 0.00 2.12
3086 3205 1.691976 GGAAACTTGTGGGGGAAAAGG 59.308 52.381 0.00 0.00 0.00 3.11
3196 3317 1.234821 TCGAAGCAAAGCCAAACGAT 58.765 45.000 0.00 0.00 0.00 3.73
3203 3324 7.020010 CAGATTATCATAATCGAAGCAAAGCC 58.980 38.462 11.10 0.00 0.00 4.35
3213 3335 7.440556 CCTAATCCTGGCAGATTATCATAATCG 59.559 40.741 17.94 7.93 37.91 3.34
3252 3375 2.280592 AAGGCACGAACCACCGAC 60.281 61.111 0.00 0.00 0.00 4.79
3255 3378 2.671963 GGGAAGGCACGAACCACC 60.672 66.667 0.00 0.00 0.00 4.61
3259 3382 2.396590 TATTCTGGGAAGGCACGAAC 57.603 50.000 0.00 0.00 0.00 3.95
3278 3407 8.672815 GCTGAGAGAGTAGCAATTTAAGAAAAT 58.327 33.333 0.00 0.00 39.67 1.82
3295 3427 6.667414 ACTCTTATATTATGGGGCTGAGAGAG 59.333 42.308 0.00 0.00 33.96 3.20
3296 3428 6.438741 CACTCTTATATTATGGGGCTGAGAGA 59.561 42.308 0.00 0.00 33.96 3.10
3297 3429 6.212388 ACACTCTTATATTATGGGGCTGAGAG 59.788 42.308 0.00 0.00 35.45 3.20
3298 3430 6.084738 ACACTCTTATATTATGGGGCTGAGA 58.915 40.000 0.00 0.00 0.00 3.27
3299 3431 6.365970 ACACTCTTATATTATGGGGCTGAG 57.634 41.667 0.00 0.00 0.00 3.35
3300 3432 6.763715 AACACTCTTATATTATGGGGCTGA 57.236 37.500 0.00 0.00 0.00 4.26
3301 3433 7.173907 CAGAAACACTCTTATATTATGGGGCTG 59.826 40.741 0.00 0.00 29.07 4.85
3302 3434 7.072454 TCAGAAACACTCTTATATTATGGGGCT 59.928 37.037 0.00 0.00 29.07 5.19
3303 3435 7.173390 GTCAGAAACACTCTTATATTATGGGGC 59.827 40.741 0.00 0.00 29.07 5.80
3304 3436 8.210946 TGTCAGAAACACTCTTATATTATGGGG 58.789 37.037 0.00 0.00 31.20 4.96
3320 3452 6.041637 ACTCCATTACACTAGTGTCAGAAACA 59.958 38.462 31.11 10.04 43.74 2.83
3321 3453 6.456501 ACTCCATTACACTAGTGTCAGAAAC 58.543 40.000 31.11 0.00 43.74 2.78
3322 3454 6.665992 ACTCCATTACACTAGTGTCAGAAA 57.334 37.500 31.11 19.95 43.74 2.52
3323 3455 7.231925 TGTTACTCCATTACACTAGTGTCAGAA 59.768 37.037 31.11 20.31 43.74 3.02
3324 3456 6.717997 TGTTACTCCATTACACTAGTGTCAGA 59.282 38.462 31.11 20.50 43.74 3.27
3325 3457 6.920817 TGTTACTCCATTACACTAGTGTCAG 58.079 40.000 31.11 20.46 43.74 3.51
3326 3458 6.904463 TGTTACTCCATTACACTAGTGTCA 57.096 37.500 31.11 21.55 43.74 3.58
3327 3459 7.654520 TGTTTGTTACTCCATTACACTAGTGTC 59.345 37.037 31.11 13.55 43.74 3.67
3328 3460 7.502696 TGTTTGTTACTCCATTACACTAGTGT 58.497 34.615 30.13 30.13 46.87 3.55
3329 3461 7.956420 TGTTTGTTACTCCATTACACTAGTG 57.044 36.000 21.44 21.44 0.00 2.74
3330 3462 8.208903 ACTTGTTTGTTACTCCATTACACTAGT 58.791 33.333 0.00 0.00 0.00 2.57
3331 3463 8.603242 ACTTGTTTGTTACTCCATTACACTAG 57.397 34.615 0.00 0.00 0.00 2.57
3332 3464 9.480053 GTACTTGTTTGTTACTCCATTACACTA 57.520 33.333 0.00 0.00 0.00 2.74
3333 3465 8.208903 AGTACTTGTTTGTTACTCCATTACACT 58.791 33.333 0.00 0.00 0.00 3.55
3334 3466 8.374327 AGTACTTGTTTGTTACTCCATTACAC 57.626 34.615 0.00 0.00 0.00 2.90
3335 3467 8.597662 GAGTACTTGTTTGTTACTCCATTACA 57.402 34.615 0.00 0.00 33.11 2.41
3342 3474 5.236282 GGAGGGAGTACTTGTTTGTTACTC 58.764 45.833 0.00 0.00 37.13 2.59
3343 3475 4.262335 CGGAGGGAGTACTTGTTTGTTACT 60.262 45.833 0.00 0.00 0.00 2.24
3344 3476 3.992427 CGGAGGGAGTACTTGTTTGTTAC 59.008 47.826 0.00 0.00 0.00 2.50
3345 3477 3.642848 ACGGAGGGAGTACTTGTTTGTTA 59.357 43.478 0.00 0.00 0.00 2.41
3346 3478 2.436911 ACGGAGGGAGTACTTGTTTGTT 59.563 45.455 0.00 0.00 0.00 2.83
3347 3479 2.036862 GACGGAGGGAGTACTTGTTTGT 59.963 50.000 0.00 0.00 0.00 2.83
3348 3480 2.612221 GGACGGAGGGAGTACTTGTTTG 60.612 54.545 0.00 0.00 0.00 2.93
3349 3481 1.622312 GGACGGAGGGAGTACTTGTTT 59.378 52.381 0.00 0.00 0.00 2.83
3350 3482 1.264295 GGACGGAGGGAGTACTTGTT 58.736 55.000 0.00 0.00 0.00 2.83
3351 3483 0.614134 GGGACGGAGGGAGTACTTGT 60.614 60.000 0.00 0.00 0.00 3.16
3352 3484 0.613853 TGGGACGGAGGGAGTACTTG 60.614 60.000 0.00 0.00 0.00 3.16
3353 3485 0.115745 TTGGGACGGAGGGAGTACTT 59.884 55.000 0.00 0.00 0.00 2.24
3354 3486 0.115745 TTTGGGACGGAGGGAGTACT 59.884 55.000 0.00 0.00 0.00 2.73
3355 3487 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
3356 3488 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
3357 3489 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
3358 3490 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
3359 3491 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
3360 3492 2.026636 TCACTTATTTTGGGACGGAGGG 60.027 50.000 0.00 0.00 0.00 4.30
3361 3493 3.007635 GTCACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
3362 3494 3.933332 GAGTCACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 33.84 4.63
3363 3495 3.325425 TGAGTCACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 33.84 4.69
3364 3496 3.670625 TGAGTCACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 33.84 4.79
3365 3497 5.682943 TTTGAGTCACTTATTTTGGGACG 57.317 39.130 0.00 0.00 33.84 4.79
3366 3498 6.918022 CACTTTTGAGTCACTTATTTTGGGAC 59.082 38.462 0.00 0.00 0.00 4.46
3367 3499 6.831353 TCACTTTTGAGTCACTTATTTTGGGA 59.169 34.615 0.00 0.00 0.00 4.37
3368 3500 7.038154 TCACTTTTGAGTCACTTATTTTGGG 57.962 36.000 0.00 0.00 0.00 4.12
3383 3515 8.780846 TTAGTACAAAGTTGACTCACTTTTGA 57.219 30.769 16.09 3.70 43.17 2.69
3384 3516 9.490663 CTTTAGTACAAAGTTGACTCACTTTTG 57.509 33.333 10.71 10.71 43.17 2.44
3385 3517 9.227777 ACTTTAGTACAAAGTTGACTCACTTTT 57.772 29.630 14.04 0.00 43.17 2.27
3386 3518 8.788325 ACTTTAGTACAAAGTTGACTCACTTT 57.212 30.769 14.04 0.00 46.00 2.66
3387 3519 8.788325 AACTTTAGTACAAAGTTGACTCACTT 57.212 30.769 23.48 7.33 45.58 3.16
3388 3520 9.530633 CTAACTTTAGTACAAAGTTGACTCACT 57.469 33.333 27.85 13.98 46.41 3.41
3389 3521 9.310716 ACTAACTTTAGTACAAAGTTGACTCAC 57.689 33.333 27.85 0.00 46.41 3.51
3410 3542 9.997482 TCAAAAATGACTCAACTTTGTACTAAC 57.003 29.630 12.53 0.00 0.00 2.34
3412 3544 9.391006 ACTCAAAAATGACTCAACTTTGTACTA 57.609 29.630 12.53 0.00 0.00 1.82
3413 3545 8.281212 ACTCAAAAATGACTCAACTTTGTACT 57.719 30.769 12.53 0.48 0.00 2.73
3414 3546 8.181573 TGACTCAAAAATGACTCAACTTTGTAC 58.818 33.333 12.53 0.00 0.00 2.90
3415 3547 8.181573 GTGACTCAAAAATGACTCAACTTTGTA 58.818 33.333 12.53 3.94 0.00 2.41
3416 3548 7.029563 GTGACTCAAAAATGACTCAACTTTGT 58.970 34.615 12.53 0.54 0.00 2.83
3417 3549 7.253422 AGTGACTCAAAAATGACTCAACTTTG 58.747 34.615 8.79 8.79 0.00 2.77
3418 3550 7.396540 AGTGACTCAAAAATGACTCAACTTT 57.603 32.000 0.00 0.00 0.00 2.66
3419 3551 7.396540 AAGTGACTCAAAAATGACTCAACTT 57.603 32.000 0.00 0.00 0.00 2.66
3420 3552 8.682936 ATAAGTGACTCAAAAATGACTCAACT 57.317 30.769 0.00 0.00 0.00 3.16
3421 3553 9.736023 AAATAAGTGACTCAAAAATGACTCAAC 57.264 29.630 0.00 0.00 0.00 3.18
3428 3560 9.329913 CGTCCTAAAATAAGTGACTCAAAAATG 57.670 33.333 0.00 0.00 0.00 2.32
3429 3561 9.280174 TCGTCCTAAAATAAGTGACTCAAAAAT 57.720 29.630 0.00 0.00 0.00 1.82
3430 3562 8.665643 TCGTCCTAAAATAAGTGACTCAAAAA 57.334 30.769 0.00 0.00 0.00 1.94
3431 3563 8.665643 TTCGTCCTAAAATAAGTGACTCAAAA 57.334 30.769 0.00 0.00 0.00 2.44
3432 3564 7.386848 CCTTCGTCCTAAAATAAGTGACTCAAA 59.613 37.037 0.00 0.00 0.00 2.69
3433 3565 6.872020 CCTTCGTCCTAAAATAAGTGACTCAA 59.128 38.462 0.00 0.00 0.00 3.02
3434 3566 6.395629 CCTTCGTCCTAAAATAAGTGACTCA 58.604 40.000 0.00 0.00 0.00 3.41
3435 3567 6.889019 CCTTCGTCCTAAAATAAGTGACTC 57.111 41.667 0.00 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.