Multiple sequence alignment - TraesCS1B01G196900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G196900 chr1B 100.000 3449 0 0 1 3449 354236033 354232585 0.000000e+00 6370.0
1 TraesCS1B01G196900 chr1B 86.301 292 30 9 2524 2808 442965884 442966172 3.340000e-80 309.0
2 TraesCS1B01G196900 chr1B 83.756 197 32 0 1435 1631 354240235 354240039 1.630000e-43 187.0
3 TraesCS1B01G196900 chr1A 92.768 1037 54 15 608 1638 342393646 342392625 0.000000e+00 1480.0
4 TraesCS1B01G196900 chr1A 97.112 831 23 1 1746 2575 342392628 342391798 0.000000e+00 1400.0
5 TraesCS1B01G196900 chr1A 96.707 668 18 3 2783 3449 342391766 342391102 0.000000e+00 1109.0
6 TraesCS1B01G196900 chr1A 95.525 581 15 5 26 603 342394860 342394288 0.000000e+00 918.0
7 TraesCS1B01G196900 chr1A 91.506 259 19 2 345 603 342394273 342394018 1.520000e-93 353.0
8 TraesCS1B01G196900 chr1A 83.000 300 37 10 2524 2818 216420022 216420312 3.410000e-65 259.0
9 TraesCS1B01G196900 chr1A 84.772 197 30 0 1435 1631 342434643 342434447 7.550000e-47 198.0
10 TraesCS1B01G196900 chr1A 82.845 239 20 10 345 570 342394003 342393773 9.770000e-46 195.0
11 TraesCS1B01G196900 chr1D 92.678 1038 53 13 608 1638 258575504 258576525 0.000000e+00 1474.0
12 TraesCS1B01G196900 chr1D 95.017 883 26 8 1746 2627 258576522 258577387 0.000000e+00 1371.0
13 TraesCS1B01G196900 chr1D 96.707 668 18 3 2783 3449 258577381 258578045 0.000000e+00 1109.0
14 TraesCS1B01G196900 chr1D 96.220 582 19 2 1 582 258574817 258575395 0.000000e+00 950.0
15 TraesCS1B01G196900 chr1D 83.249 197 33 0 1435 1631 258553659 258553855 7.600000e-42 182.0
16 TraesCS1B01G196900 chr5A 97.222 180 3 2 2622 2799 35197112 35196933 1.560000e-78 303.0
17 TraesCS1B01G196900 chr5A 94.030 201 11 1 2617 2817 582916447 582916646 1.560000e-78 303.0
18 TraesCS1B01G196900 chr5A 86.891 267 24 11 2570 2831 8807686 8807946 4.360000e-74 289.0
19 TraesCS1B01G196900 chr7B 95.187 187 7 2 2622 2807 739630271 739630086 9.360000e-76 294.0
20 TraesCS1B01G196900 chr7B 89.427 227 20 3 2616 2838 636433793 636433567 2.030000e-72 283.0
21 TraesCS1B01G196900 chr7B 86.335 161 17 5 2573 2730 378407028 378407186 1.650000e-38 171.0
22 TraesCS1B01G196900 chr7B 84.091 88 12 2 2523 2610 436087762 436087677 2.210000e-12 84.2
23 TraesCS1B01G196900 chr7B 84.211 95 6 7 2585 2672 565435162 565435254 2.210000e-12 84.2
24 TraesCS1B01G196900 chr6A 93.846 195 9 3 2594 2788 596588475 596588284 1.210000e-74 291.0
25 TraesCS1B01G196900 chr6B 88.261 230 22 5 2573 2799 716638146 716638373 1.580000e-68 270.0
26 TraesCS1B01G196900 chr6B 84.242 165 18 4 2573 2730 719967614 719967451 1.660000e-33 154.0
27 TraesCS1B01G196900 chr2B 84.064 251 33 7 2570 2816 385568926 385568679 5.750000e-58 235.0
28 TraesCS1B01G196900 chr2B 89.011 91 8 2 2524 2613 209085342 209085253 1.010000e-20 111.0
29 TraesCS1B01G196900 chr3A 79.399 233 40 7 2570 2799 501866740 501866513 1.280000e-34 158.0
30 TraesCS1B01G196900 chr3A 77.828 221 41 7 2570 2787 501882594 501882379 2.790000e-26 130.0
31 TraesCS1B01G196900 chr3A 93.976 83 3 2 2523 2604 79398349 79398430 1.300000e-24 124.0
32 TraesCS1B01G196900 chr5D 91.111 90 7 1 2524 2613 265961975 265961887 1.680000e-23 121.0
33 TraesCS1B01G196900 chr5B 90.110 91 7 2 2524 2613 299602372 299602283 2.170000e-22 117.0
34 TraesCS1B01G196900 chr4B 91.892 74 3 3 2524 2595 173038561 173038489 2.190000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G196900 chr1B 354232585 354236033 3448 True 6370.000000 6370 100.000000 1 3449 1 chr1B.!!$R1 3448
1 TraesCS1B01G196900 chr1A 342391102 342394860 3758 True 909.166667 1480 92.743833 26 3449 6 chr1A.!!$R2 3423
2 TraesCS1B01G196900 chr1D 258574817 258578045 3228 False 1226.000000 1474 95.155500 1 3449 4 chr1D.!!$F2 3448

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
892 1532 0.253044 CTGCCACTAGCTTAGCCCAA 59.747 55.0 0.0 0.0 44.23 4.12 F
1683 2330 0.034896 TCTGAAACTGAAGACCCCGC 59.965 55.0 0.0 0.0 0.00 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1698 2345 0.098376 AGTCGTTAGTGTCGCCGATC 59.902 55.0 0.00 0.00 0.00 3.69 R
3218 3869 0.471191 AATGCGGGAGATGATCAGCA 59.529 50.0 14.38 10.56 43.87 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 4.518249 AGATTCTAGTAAAGCAACCAGGC 58.482 43.478 0.00 0.00 0.00 4.85
40 41 0.978151 TAGTAAAGCAACCAGGCGGA 59.022 50.000 2.43 0.00 39.27 5.54
114 115 2.936498 ACACACCGAACTTCTGAAACAG 59.064 45.455 0.00 0.00 0.00 3.16
138 139 6.396450 GGTCTTTACCTACCAAGAACACTAG 58.604 44.000 0.00 0.00 43.08 2.57
357 359 0.980423 AAACTGAGGCAGGAGAGACC 59.020 55.000 0.00 0.00 35.51 3.85
380 382 7.162082 ACCAGAATAGAGTTTTGGTGAAGTAG 58.838 38.462 2.61 0.00 40.47 2.57
434 436 2.477825 GACATCATCTCCCATGTCACG 58.522 52.381 7.09 0.00 45.64 4.35
587 857 8.208575 TGGTTATAGCCCAAACCTAAAAATTT 57.791 30.769 2.81 0.00 44.55 1.82
603 873 2.780149 ATTTCTTGGACGCGCGCAAC 62.780 55.000 32.58 22.79 0.00 4.17
619 1258 1.474077 GCAACCTTTCGGAGCATGATT 59.526 47.619 0.00 0.00 35.78 2.57
624 1263 3.191371 ACCTTTCGGAGCATGATTGAAAC 59.809 43.478 0.00 0.00 0.00 2.78
634 1273 7.573843 CGGAGCATGATTGAAACTCTACTTTTT 60.574 37.037 0.00 0.00 0.00 1.94
646 1285 6.441088 ACTCTACTTTTTGGATTCCTCTGT 57.559 37.500 3.95 0.00 0.00 3.41
665 1304 6.094603 CCTCTGTTTCTCCTCCAACATTATTG 59.905 42.308 0.00 0.00 32.50 1.90
673 1312 3.257873 CCTCCAACATTATTGTGTGCCAA 59.742 43.478 0.00 0.00 35.83 4.52
676 1315 4.586421 TCCAACATTATTGTGTGCCAAGAA 59.414 37.500 0.00 0.00 38.53 2.52
683 1322 2.869233 TGTGTGCCAAGAAAAAGCTC 57.131 45.000 0.00 0.00 0.00 4.09
746 1385 1.273327 CCTGGAGTGAAAATTGGTGGC 59.727 52.381 0.00 0.00 0.00 5.01
832 1472 2.204074 TGCCCTGGCCTCCACTAA 60.204 61.111 3.32 0.00 41.09 2.24
840 1480 1.746991 GCCTCCACTAAGTGCTGCC 60.747 63.158 0.00 0.00 31.34 4.85
841 1481 1.679311 CCTCCACTAAGTGCTGCCA 59.321 57.895 0.00 0.00 31.34 4.92
892 1532 0.253044 CTGCCACTAGCTTAGCCCAA 59.747 55.000 0.00 0.00 44.23 4.12
928 1568 0.978146 TAAGCTGTCCTCCTCCTGCC 60.978 60.000 0.00 0.00 0.00 4.85
1011 1655 4.809496 CCTCCAATGGCGGCTGCT 62.809 66.667 18.85 0.00 42.25 4.24
1029 1673 1.608590 GCTGCTGCTTCAACAGGTAAA 59.391 47.619 8.53 0.00 38.16 2.01
1030 1674 2.229784 GCTGCTGCTTCAACAGGTAAAT 59.770 45.455 8.53 0.00 38.16 1.40
1031 1675 3.829948 CTGCTGCTTCAACAGGTAAATG 58.170 45.455 0.00 0.00 38.16 2.32
1033 1677 2.030007 GCTGCTTCAACAGGTAAATGCA 60.030 45.455 0.00 0.00 38.16 3.96
1034 1678 3.367703 GCTGCTTCAACAGGTAAATGCAT 60.368 43.478 0.00 0.00 38.16 3.96
1036 1680 2.925563 GCTTCAACAGGTAAATGCATGC 59.074 45.455 11.82 11.82 0.00 4.06
1037 1681 3.614630 GCTTCAACAGGTAAATGCATGCA 60.615 43.478 25.04 25.04 0.00 3.96
1038 1682 4.751060 CTTCAACAGGTAAATGCATGCAT 58.249 39.130 27.46 27.46 38.46 3.96
1039 1683 4.374843 TCAACAGGTAAATGCATGCATC 57.625 40.909 32.25 19.93 35.31 3.91
1040 1684 3.110358 CAACAGGTAAATGCATGCATCG 58.890 45.455 32.25 18.07 35.31 3.84
1041 1685 2.642427 ACAGGTAAATGCATGCATCGA 58.358 42.857 32.25 20.28 35.31 3.59
1042 1686 3.216800 ACAGGTAAATGCATGCATCGAT 58.783 40.909 32.25 22.53 35.31 3.59
1043 1687 4.388485 ACAGGTAAATGCATGCATCGATA 58.612 39.130 32.25 21.57 35.31 2.92
1044 1688 5.005740 ACAGGTAAATGCATGCATCGATAT 58.994 37.500 32.25 14.70 35.31 1.63
1066 1710 8.868522 ATATGAAAACTGAGGAGAAACAATGA 57.131 30.769 0.00 0.00 0.00 2.57
1073 1717 1.074405 AGGAGAAACAATGAGGCAGCA 59.926 47.619 0.00 0.00 0.00 4.41
1082 1726 1.708341 ATGAGGCAGCAGTTTTGGTT 58.292 45.000 0.00 0.00 31.36 3.67
1086 1730 2.819608 GAGGCAGCAGTTTTGGTTATCA 59.180 45.455 0.00 0.00 31.36 2.15
1088 1732 2.819608 GGCAGCAGTTTTGGTTATCAGA 59.180 45.455 0.00 0.00 31.36 3.27
1089 1733 3.366374 GGCAGCAGTTTTGGTTATCAGAC 60.366 47.826 0.00 0.00 31.36 3.51
1135 1782 1.268999 TGTACGTGCGGTTCGTTAACT 60.269 47.619 0.00 0.00 41.72 2.24
1331 1978 3.834373 CGGTTCTTGGCGTACGCG 61.834 66.667 31.78 19.49 43.06 6.01
1547 2194 2.123251 ATCCAGGACCTCGCCGAT 60.123 61.111 0.00 0.00 0.00 4.18
1637 2284 2.699954 GTCAAGTACATCCCACACAGG 58.300 52.381 0.00 0.00 37.03 4.00
1638 2285 2.038557 GTCAAGTACATCCCACACAGGT 59.961 50.000 0.00 0.00 34.66 4.00
1639 2286 3.259876 GTCAAGTACATCCCACACAGGTA 59.740 47.826 0.00 0.00 34.66 3.08
1640 2287 3.904965 TCAAGTACATCCCACACAGGTAA 59.095 43.478 0.00 0.00 34.66 2.85
1641 2288 4.534500 TCAAGTACATCCCACACAGGTAAT 59.466 41.667 0.00 0.00 34.66 1.89
1642 2289 5.013704 TCAAGTACATCCCACACAGGTAATT 59.986 40.000 0.00 0.00 34.66 1.40
1643 2290 6.213802 TCAAGTACATCCCACACAGGTAATTA 59.786 38.462 0.00 0.00 34.66 1.40
1644 2291 6.630203 AGTACATCCCACACAGGTAATTAA 57.370 37.500 0.00 0.00 34.66 1.40
1645 2292 7.023171 AGTACATCCCACACAGGTAATTAAA 57.977 36.000 0.00 0.00 34.66 1.52
1646 2293 6.882678 AGTACATCCCACACAGGTAATTAAAC 59.117 38.462 0.00 0.00 34.66 2.01
1647 2294 5.014202 ACATCCCACACAGGTAATTAAACC 58.986 41.667 0.00 0.00 40.06 3.27
1661 2308 8.405418 GGTAATTAAACCTCCTCAAAGTTTCT 57.595 34.615 0.00 0.00 36.53 2.52
1662 2309 8.297426 GGTAATTAAACCTCCTCAAAGTTTCTG 58.703 37.037 0.00 0.00 36.53 3.02
1663 2310 5.767816 TTAAACCTCCTCAAAGTTTCTGC 57.232 39.130 0.00 0.00 35.45 4.26
1664 2311 3.584733 AACCTCCTCAAAGTTTCTGCT 57.415 42.857 0.00 0.00 0.00 4.24
1665 2312 3.133141 ACCTCCTCAAAGTTTCTGCTC 57.867 47.619 0.00 0.00 0.00 4.26
1666 2313 2.708325 ACCTCCTCAAAGTTTCTGCTCT 59.292 45.455 0.00 0.00 0.00 4.09
1667 2314 3.072944 CCTCCTCAAAGTTTCTGCTCTG 58.927 50.000 0.00 0.00 0.00 3.35
1668 2315 3.244353 CCTCCTCAAAGTTTCTGCTCTGA 60.244 47.826 0.00 0.00 0.00 3.27
1669 2316 4.384056 CTCCTCAAAGTTTCTGCTCTGAA 58.616 43.478 0.00 0.00 0.00 3.02
1670 2317 4.780815 TCCTCAAAGTTTCTGCTCTGAAA 58.219 39.130 0.00 0.00 34.05 2.69
1679 2326 3.393089 TCTGCTCTGAAACTGAAGACC 57.607 47.619 0.00 0.00 0.00 3.85
1680 2327 2.037772 TCTGCTCTGAAACTGAAGACCC 59.962 50.000 0.00 0.00 0.00 4.46
1681 2328 1.072331 TGCTCTGAAACTGAAGACCCC 59.928 52.381 0.00 0.00 0.00 4.95
1682 2329 1.941668 GCTCTGAAACTGAAGACCCCG 60.942 57.143 0.00 0.00 0.00 5.73
1683 2330 0.034896 TCTGAAACTGAAGACCCCGC 59.965 55.000 0.00 0.00 0.00 6.13
1684 2331 1.291877 CTGAAACTGAAGACCCCGCG 61.292 60.000 0.00 0.00 0.00 6.46
1685 2332 2.668550 AAACTGAAGACCCCGCGC 60.669 61.111 0.00 0.00 0.00 6.86
1688 2335 4.124351 CTGAAGACCCCGCGCGTA 62.124 66.667 29.95 3.25 0.00 4.42
1689 2336 3.636313 CTGAAGACCCCGCGCGTAA 62.636 63.158 29.95 0.02 0.00 3.18
1690 2337 2.884207 GAAGACCCCGCGCGTAAG 60.884 66.667 29.95 18.69 43.44 2.34
1691 2338 4.446413 AAGACCCCGCGCGTAAGG 62.446 66.667 29.95 26.52 38.28 2.69
1693 2340 4.747529 GACCCCGCGCGTAAGGTT 62.748 66.667 29.33 14.67 38.28 3.50
1694 2341 4.747529 ACCCCGCGCGTAAGGTTC 62.748 66.667 29.95 0.00 38.28 3.62
1695 2342 4.745751 CCCCGCGCGTAAGGTTCA 62.746 66.667 29.95 0.00 38.28 3.18
1696 2343 3.186047 CCCGCGCGTAAGGTTCAG 61.186 66.667 29.95 9.60 38.28 3.02
1697 2344 2.431942 CCGCGCGTAAGGTTCAGT 60.432 61.111 29.95 0.00 38.28 3.41
1698 2345 2.726691 CCGCGCGTAAGGTTCAGTG 61.727 63.158 29.95 4.27 38.28 3.66
1699 2346 1.731613 CGCGCGTAAGGTTCAGTGA 60.732 57.895 24.19 0.00 38.28 3.41
1700 2347 1.076533 CGCGCGTAAGGTTCAGTGAT 61.077 55.000 24.19 0.00 38.28 3.06
1701 2348 0.645868 GCGCGTAAGGTTCAGTGATC 59.354 55.000 8.43 0.00 38.28 2.92
1702 2349 0.914551 CGCGTAAGGTTCAGTGATCG 59.085 55.000 0.00 0.00 38.28 3.69
1703 2350 1.278238 GCGTAAGGTTCAGTGATCGG 58.722 55.000 0.00 0.00 38.28 4.18
1704 2351 1.278238 CGTAAGGTTCAGTGATCGGC 58.722 55.000 0.00 0.00 0.00 5.54
1705 2352 1.278238 GTAAGGTTCAGTGATCGGCG 58.722 55.000 0.00 0.00 0.00 6.46
1706 2353 1.135199 GTAAGGTTCAGTGATCGGCGA 60.135 52.381 13.87 13.87 0.00 5.54
1707 2354 0.389948 AAGGTTCAGTGATCGGCGAC 60.390 55.000 13.76 7.17 0.00 5.19
1708 2355 1.080093 GGTTCAGTGATCGGCGACA 60.080 57.895 13.76 10.07 0.00 4.35
1709 2356 1.352156 GGTTCAGTGATCGGCGACAC 61.352 60.000 24.88 24.88 37.30 3.67
1710 2357 0.388649 GTTCAGTGATCGGCGACACT 60.389 55.000 27.48 27.48 46.32 3.55
1711 2358 1.135489 GTTCAGTGATCGGCGACACTA 60.135 52.381 30.23 20.12 44.07 2.74
1712 2359 1.170442 TCAGTGATCGGCGACACTAA 58.830 50.000 30.23 21.17 44.07 2.24
1713 2360 1.135489 TCAGTGATCGGCGACACTAAC 60.135 52.381 30.23 17.98 44.07 2.34
1714 2361 0.179171 AGTGATCGGCGACACTAACG 60.179 55.000 29.95 0.00 44.06 3.18
1715 2362 0.179181 GTGATCGGCGACACTAACGA 60.179 55.000 24.93 0.00 39.85 3.85
1716 2363 0.179181 TGATCGGCGACACTAACGAC 60.179 55.000 13.76 0.00 38.24 4.34
1717 2364 0.098376 GATCGGCGACACTAACGACT 59.902 55.000 13.76 0.00 38.24 4.18
1718 2365 0.179171 ATCGGCGACACTAACGACTG 60.179 55.000 13.76 0.00 38.24 3.51
1719 2366 1.208358 CGGCGACACTAACGACTGA 59.792 57.895 0.00 0.00 36.56 3.41
1720 2367 1.063951 CGGCGACACTAACGACTGAC 61.064 60.000 0.00 0.00 36.56 3.51
1721 2368 0.240411 GGCGACACTAACGACTGACT 59.760 55.000 0.00 0.00 35.75 3.41
1722 2369 1.328439 GCGACACTAACGACTGACTG 58.672 55.000 0.00 0.00 0.00 3.51
1723 2370 1.965083 CGACACTAACGACTGACTGG 58.035 55.000 0.00 0.00 0.00 4.00
1724 2371 1.266175 CGACACTAACGACTGACTGGT 59.734 52.381 0.00 0.00 0.00 4.00
1725 2372 2.287427 CGACACTAACGACTGACTGGTT 60.287 50.000 0.00 0.00 0.00 3.67
1726 2373 3.306818 GACACTAACGACTGACTGGTTC 58.693 50.000 0.00 0.00 0.00 3.62
1727 2374 2.957006 ACACTAACGACTGACTGGTTCT 59.043 45.455 0.00 0.00 0.00 3.01
1728 2375 4.139786 ACACTAACGACTGACTGGTTCTA 58.860 43.478 0.00 0.00 0.00 2.10
1729 2376 4.023365 ACACTAACGACTGACTGGTTCTAC 60.023 45.833 0.00 0.00 0.00 2.59
1730 2377 4.215827 CACTAACGACTGACTGGTTCTACT 59.784 45.833 0.00 0.00 0.00 2.57
1731 2378 3.644884 AACGACTGACTGGTTCTACTG 57.355 47.619 0.00 0.00 0.00 2.74
1732 2379 1.887198 ACGACTGACTGGTTCTACTGG 59.113 52.381 0.00 0.00 0.00 4.00
1733 2380 1.402984 CGACTGACTGGTTCTACTGGC 60.403 57.143 0.00 0.00 0.00 4.85
1734 2381 1.618837 GACTGACTGGTTCTACTGGCA 59.381 52.381 0.00 0.00 0.00 4.92
1735 2382 2.037251 GACTGACTGGTTCTACTGGCAA 59.963 50.000 0.00 0.00 0.00 4.52
1736 2383 2.639839 ACTGACTGGTTCTACTGGCAAT 59.360 45.455 0.00 0.00 0.00 3.56
1737 2384 3.073062 ACTGACTGGTTCTACTGGCAATT 59.927 43.478 0.00 0.00 0.00 2.32
1738 2385 3.411446 TGACTGGTTCTACTGGCAATTG 58.589 45.455 0.00 0.00 0.00 2.32
1739 2386 2.749621 GACTGGTTCTACTGGCAATTGG 59.250 50.000 7.72 0.00 0.00 3.16
1740 2387 2.108250 ACTGGTTCTACTGGCAATTGGT 59.892 45.455 7.72 0.00 0.00 3.67
1741 2388 3.157087 CTGGTTCTACTGGCAATTGGTT 58.843 45.455 7.72 0.00 0.00 3.67
1742 2389 4.202524 ACTGGTTCTACTGGCAATTGGTTA 60.203 41.667 7.72 0.00 0.00 2.85
1743 2390 4.929479 TGGTTCTACTGGCAATTGGTTAT 58.071 39.130 7.72 0.00 0.00 1.89
1744 2391 4.704540 TGGTTCTACTGGCAATTGGTTATG 59.295 41.667 7.72 0.00 0.00 1.90
1745 2392 4.440112 GGTTCTACTGGCAATTGGTTATGC 60.440 45.833 7.72 0.00 41.82 3.14
1746 2393 3.961849 TCTACTGGCAATTGGTTATGCA 58.038 40.909 7.72 0.00 44.32 3.96
1747 2394 3.947196 TCTACTGGCAATTGGTTATGCAG 59.053 43.478 7.72 0.00 44.32 4.41
2023 2670 3.305131 GGAATGTTCCAAAAGGTTCGTCC 60.305 47.826 6.91 0.00 46.76 4.79
2093 2741 0.460109 CGACCCTGATGCAACGATCA 60.460 55.000 0.00 0.00 0.00 2.92
2108 2756 1.730121 CGATCATGCGCTTTGCTTTGT 60.730 47.619 9.73 0.00 46.63 2.83
2151 2799 4.087892 CAGGGGGTGCAGGAGTCG 62.088 72.222 0.00 0.00 0.00 4.18
2188 2836 3.315140 TGATGTTCGGGCGGTGGA 61.315 61.111 0.00 0.00 0.00 4.02
2383 3031 1.035923 GCTCGGAGACAGGATCATCA 58.964 55.000 9.69 0.00 0.00 3.07
2516 3165 4.879598 AGGAAGCAATGCTGAAGAAAAAG 58.120 39.130 9.14 0.00 39.62 2.27
2588 3237 9.710900 TGATTCAGATGTATATAGACGCATTTT 57.289 29.630 0.00 0.00 0.00 1.82
2595 3244 7.940178 TGTATATAGACGCATTTTAGTGTGG 57.060 36.000 0.00 0.00 33.99 4.17
2606 3255 5.519722 CATTTTAGTGTGGTTGTTCACTCC 58.480 41.667 1.08 0.00 42.77 3.85
2610 3260 1.947456 GTGTGGTTGTTCACTCCTTCC 59.053 52.381 0.00 0.00 38.40 3.46
2611 3261 1.562008 TGTGGTTGTTCACTCCTTCCA 59.438 47.619 0.00 0.00 38.40 3.53
2612 3262 2.222027 GTGGTTGTTCACTCCTTCCAG 58.778 52.381 0.00 0.00 34.98 3.86
2613 3263 1.239347 GGTTGTTCACTCCTTCCAGC 58.761 55.000 0.00 0.00 0.00 4.85
2614 3264 1.476833 GGTTGTTCACTCCTTCCAGCA 60.477 52.381 0.00 0.00 0.00 4.41
2615 3265 2.508526 GTTGTTCACTCCTTCCAGCAT 58.491 47.619 0.00 0.00 0.00 3.79
2616 3266 2.189594 TGTTCACTCCTTCCAGCATG 57.810 50.000 0.00 0.00 0.00 4.06
2617 3267 1.421268 TGTTCACTCCTTCCAGCATGT 59.579 47.619 0.00 0.00 0.00 3.21
2618 3268 2.637382 TGTTCACTCCTTCCAGCATGTA 59.363 45.455 0.00 0.00 0.00 2.29
2619 3269 3.264193 TGTTCACTCCTTCCAGCATGTAT 59.736 43.478 0.00 0.00 0.00 2.29
2620 3270 3.548745 TCACTCCTTCCAGCATGTATG 57.451 47.619 0.00 0.00 0.00 2.39
2621 3271 2.840038 TCACTCCTTCCAGCATGTATGT 59.160 45.455 0.00 0.00 0.00 2.29
2622 3272 4.030216 TCACTCCTTCCAGCATGTATGTA 58.970 43.478 0.00 0.00 0.00 2.29
2623 3273 4.122776 CACTCCTTCCAGCATGTATGTAC 58.877 47.826 0.00 0.00 0.00 2.90
2624 3274 4.033709 ACTCCTTCCAGCATGTATGTACT 58.966 43.478 0.00 0.00 0.00 2.73
2625 3275 4.100189 ACTCCTTCCAGCATGTATGTACTC 59.900 45.833 0.00 0.00 0.00 2.59
2626 3276 3.388024 TCCTTCCAGCATGTATGTACTCC 59.612 47.826 0.00 0.00 0.00 3.85
2627 3277 3.495100 CCTTCCAGCATGTATGTACTCCC 60.495 52.174 0.00 0.00 0.00 4.30
2628 3278 3.046283 TCCAGCATGTATGTACTCCCT 57.954 47.619 0.00 0.00 0.00 4.20
2629 3279 2.965831 TCCAGCATGTATGTACTCCCTC 59.034 50.000 0.00 0.00 0.00 4.30
2630 3280 2.037772 CCAGCATGTATGTACTCCCTCC 59.962 54.545 0.00 0.00 0.00 4.30
2631 3281 1.964223 AGCATGTATGTACTCCCTCCG 59.036 52.381 0.00 0.00 0.00 4.63
2632 3282 1.687123 GCATGTATGTACTCCCTCCGT 59.313 52.381 0.00 0.00 0.00 4.69
2633 3283 2.102588 GCATGTATGTACTCCCTCCGTT 59.897 50.000 0.00 0.00 0.00 4.44
2634 3284 3.799232 GCATGTATGTACTCCCTCCGTTC 60.799 52.174 0.00 0.00 0.00 3.95
2635 3285 2.381911 TGTATGTACTCCCTCCGTTCC 58.618 52.381 0.00 0.00 0.00 3.62
2636 3286 2.024655 TGTATGTACTCCCTCCGTTCCT 60.025 50.000 0.00 0.00 0.00 3.36
2637 3287 3.202818 TGTATGTACTCCCTCCGTTCCTA 59.797 47.826 0.00 0.00 0.00 2.94
2638 3288 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
2639 3289 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
2640 3290 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
2641 3291 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
2642 3292 4.646492 TGTACTCCCTCCGTTCCTAAATAC 59.354 45.833 0.00 0.00 0.00 1.89
2643 3293 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
2644 3294 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
2645 3295 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
2646 3296 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
2647 3297 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
2648 3298 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
2649 3299 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
2650 3300 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
2651 3301 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
2652 3302 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
2653 3303 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
2654 3304 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
2655 3305 8.248945 CCGTTCCTAAATACTTGTCTTTCTAGA 58.751 37.037 0.00 0.00 0.00 2.43
2679 3329 9.302345 AGACATTTCAAATGACTACTACATACG 57.698 33.333 17.30 0.00 0.00 3.06
2680 3330 8.420374 ACATTTCAAATGACTACTACATACGG 57.580 34.615 17.30 0.00 0.00 4.02
2681 3331 8.255206 ACATTTCAAATGACTACTACATACGGA 58.745 33.333 17.30 0.00 0.00 4.69
2682 3332 9.261180 CATTTCAAATGACTACTACATACGGAT 57.739 33.333 3.82 0.00 0.00 4.18
2683 3333 8.642908 TTTCAAATGACTACTACATACGGATG 57.357 34.615 5.94 5.94 39.16 3.51
2685 3335 8.454570 TCAAATGACTACTACATACGGATGTA 57.545 34.615 19.32 19.32 44.77 2.29
2686 3336 8.347771 TCAAATGACTACTACATACGGATGTAC 58.652 37.037 16.71 7.33 44.77 2.90
2687 3337 5.912360 TGACTACTACATACGGATGTACG 57.088 43.478 16.71 14.37 44.77 3.67
2688 3338 5.359756 TGACTACTACATACGGATGTACGT 58.640 41.667 16.71 18.67 44.77 3.57
2702 3352 8.158169 ACGGATGTACGTAGACATATTTTAGA 57.842 34.615 3.97 0.00 46.58 2.10
2703 3353 8.288208 ACGGATGTACGTAGACATATTTTAGAG 58.712 37.037 3.97 0.00 46.58 2.43
2704 3354 8.288208 CGGATGTACGTAGACATATTTTAGAGT 58.712 37.037 3.97 0.00 40.18 3.24
2705 3355 9.395707 GGATGTACGTAGACATATTTTAGAGTG 57.604 37.037 3.97 0.00 40.18 3.51
2706 3356 9.947669 GATGTACGTAGACATATTTTAGAGTGT 57.052 33.333 3.97 0.00 40.18 3.55
2725 3375 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
2726 3376 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
2727 3377 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
2728 3378 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
2729 3379 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
2730 3380 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
2731 3381 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
2732 3382 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
2733 3383 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
2734 3384 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
2735 3385 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
2736 3386 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
2737 3387 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
2738 3388 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
2739 3389 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
2740 3390 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
2741 3391 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
2742 3392 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
2743 3393 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
2744 3394 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
2745 3395 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
2746 3396 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
2747 3397 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
2748 3398 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
2749 3399 6.367695 TCCGTATGTAGTCACTTGTTGAAATG 59.632 38.462 0.00 0.00 35.39 2.32
2750 3400 6.015504 CGTATGTAGTCACTTGTTGAAATGC 58.984 40.000 0.00 0.00 35.39 3.56
2751 3401 4.829064 TGTAGTCACTTGTTGAAATGCC 57.171 40.909 0.00 0.00 35.39 4.40
2752 3402 4.460263 TGTAGTCACTTGTTGAAATGCCT 58.540 39.130 0.00 0.00 35.39 4.75
2753 3403 5.616270 TGTAGTCACTTGTTGAAATGCCTA 58.384 37.500 0.00 0.00 35.39 3.93
2754 3404 5.700832 TGTAGTCACTTGTTGAAATGCCTAG 59.299 40.000 0.00 0.00 35.39 3.02
2755 3405 4.973168 AGTCACTTGTTGAAATGCCTAGA 58.027 39.130 0.00 0.00 35.39 2.43
2756 3406 5.376625 AGTCACTTGTTGAAATGCCTAGAA 58.623 37.500 0.00 0.00 35.39 2.10
2757 3407 5.827797 AGTCACTTGTTGAAATGCCTAGAAA 59.172 36.000 0.00 0.00 35.39 2.52
2758 3408 6.016777 AGTCACTTGTTGAAATGCCTAGAAAG 60.017 38.462 0.00 0.00 35.39 2.62
2759 3409 6.017109 GTCACTTGTTGAAATGCCTAGAAAGA 60.017 38.462 0.00 0.00 35.39 2.52
2760 3410 6.017109 TCACTTGTTGAAATGCCTAGAAAGAC 60.017 38.462 0.00 0.00 0.00 3.01
2761 3411 5.827797 ACTTGTTGAAATGCCTAGAAAGACA 59.172 36.000 0.00 0.00 0.00 3.41
2762 3412 6.321181 ACTTGTTGAAATGCCTAGAAAGACAA 59.679 34.615 0.00 0.00 0.00 3.18
2763 3413 6.317789 TGTTGAAATGCCTAGAAAGACAAG 57.682 37.500 0.00 0.00 0.00 3.16
2764 3414 5.827797 TGTTGAAATGCCTAGAAAGACAAGT 59.172 36.000 0.00 0.00 0.00 3.16
2765 3415 6.995686 TGTTGAAATGCCTAGAAAGACAAGTA 59.004 34.615 0.00 0.00 0.00 2.24
2766 3416 7.665559 TGTTGAAATGCCTAGAAAGACAAGTAT 59.334 33.333 0.00 0.00 0.00 2.12
2767 3417 8.515414 GTTGAAATGCCTAGAAAGACAAGTATT 58.485 33.333 0.00 0.00 0.00 1.89
2768 3418 8.635765 TGAAATGCCTAGAAAGACAAGTATTT 57.364 30.769 0.00 0.00 0.00 1.40
2769 3419 9.733556 TGAAATGCCTAGAAAGACAAGTATTTA 57.266 29.630 0.00 0.00 0.00 1.40
2771 3421 8.738645 AATGCCTAGAAAGACAAGTATTTAGG 57.261 34.615 5.26 5.26 0.00 2.69
2772 3422 7.490657 TGCCTAGAAAGACAAGTATTTAGGA 57.509 36.000 11.40 0.00 26.70 2.94
2773 3423 7.913789 TGCCTAGAAAGACAAGTATTTAGGAA 58.086 34.615 11.40 1.02 26.70 3.36
2774 3424 7.822822 TGCCTAGAAAGACAAGTATTTAGGAAC 59.177 37.037 11.40 0.00 26.70 3.62
2775 3425 7.010275 GCCTAGAAAGACAAGTATTTAGGAACG 59.990 40.741 11.40 0.00 26.70 3.95
2776 3426 7.491696 CCTAGAAAGACAAGTATTTAGGAACGG 59.508 40.741 4.01 0.00 26.70 4.44
2777 3427 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
2778 3428 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
2779 3429 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
2780 3430 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
2781 3431 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
2787 3437 3.463048 TTAGGAACGGAGGGAGTAGTT 57.537 47.619 0.00 0.00 0.00 2.24
2789 3439 1.076677 AGGAACGGAGGGAGTAGTTCA 59.923 52.381 9.01 0.00 43.24 3.18
2896 3547 6.757897 ACAAACAAACTGAAGAGATTGTGA 57.242 33.333 0.00 0.00 42.61 3.58
2921 3572 8.212259 ACATAATCTATATATCATCAGGGGGC 57.788 38.462 0.00 0.00 0.00 5.80
2976 3627 3.119708 CCGGGATCAGAAGAAGCAAAAAG 60.120 47.826 0.00 0.00 0.00 2.27
3070 3721 4.625607 TCTAGACTCACTCACAGTCTCA 57.374 45.455 5.63 0.00 46.40 3.27
3071 3722 5.172687 TCTAGACTCACTCACAGTCTCAT 57.827 43.478 5.63 0.00 46.40 2.90
3194 3845 5.685954 GCTGTAAAACGGGAGAAAAAGAAAG 59.314 40.000 0.00 0.00 0.00 2.62
3218 3869 1.212195 GCCGGGGAGGAAAGAATAACT 59.788 52.381 2.18 0.00 45.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.002624 CCTCCGCCTGGTTGCTTTA 60.003 57.895 0.00 0.00 36.30 1.85
37 38 2.883828 AAGGTGCACCACTCCTCCG 61.884 63.158 36.39 0.00 41.51 4.63
40 41 1.451936 GTCAAGGTGCACCACTCCT 59.548 57.895 36.39 14.05 44.30 3.69
138 139 2.514824 GATGGCCTTCTGGGTCGC 60.515 66.667 11.34 0.00 44.07 5.19
357 359 9.360093 CTACTACTTCACCAAAACTCTATTCTG 57.640 37.037 0.00 0.00 0.00 3.02
434 436 3.713288 TGTACGCACATCTTACATAGGC 58.287 45.455 0.00 0.00 0.00 3.93
572 842 5.176774 GCGTCCAAGAAATTTTTAGGTTTGG 59.823 40.000 0.00 1.48 35.95 3.28
604 874 4.394300 AGAGTTTCAATCATGCTCCGAAAG 59.606 41.667 0.00 0.00 0.00 2.62
619 1258 7.445402 CAGAGGAATCCAAAAAGTAGAGTTTCA 59.555 37.037 0.61 0.00 0.00 2.69
624 1263 7.663493 AGAAACAGAGGAATCCAAAAAGTAGAG 59.337 37.037 0.61 0.00 0.00 2.43
634 1273 2.840651 GGAGGAGAAACAGAGGAATCCA 59.159 50.000 0.61 0.00 0.00 3.41
646 1285 5.048083 GCACACAATAATGTTGGAGGAGAAA 60.048 40.000 0.00 0.00 37.82 2.52
665 1304 2.869233 TGAGCTTTTTCTTGGCACAC 57.131 45.000 0.00 0.00 39.29 3.82
673 1312 8.572185 GGAGTAATTTTCTCTTGAGCTTTTTCT 58.428 33.333 3.47 0.00 33.06 2.52
676 1315 9.004717 GTAGGAGTAATTTTCTCTTGAGCTTTT 57.995 33.333 3.47 0.00 33.06 2.27
683 1322 7.386851 TGACAGGTAGGAGTAATTTTCTCTTG 58.613 38.462 3.47 0.00 33.06 3.02
796 1436 0.811281 ACGGCCTACCAACGTAGTAC 59.189 55.000 0.00 0.00 45.00 2.73
797 1437 0.810648 CACGGCCTACCAACGTAGTA 59.189 55.000 0.00 0.00 45.00 1.82
799 1439 1.808390 GCACGGCCTACCAACGTAG 60.808 63.158 0.00 0.00 41.55 3.51
800 1440 2.262292 GCACGGCCTACCAACGTA 59.738 61.111 0.00 0.00 39.02 3.57
801 1441 4.692475 GGCACGGCCTACCAACGT 62.692 66.667 0.00 0.00 46.69 3.99
840 1480 4.741676 GGTGACACTTTGCTGAAAGAAATG 59.258 41.667 5.39 0.00 41.12 2.32
841 1481 4.498009 CGGTGACACTTTGCTGAAAGAAAT 60.498 41.667 5.39 0.00 41.12 2.17
892 1532 3.011257 AGCTTAATGTGTTGGGTGGGTAT 59.989 43.478 0.00 0.00 0.00 2.73
928 1568 1.285641 GATGTGTGGCGTTGTTGGG 59.714 57.895 0.00 0.00 0.00 4.12
1011 1655 2.030007 GCATTTACCTGTTGAAGCAGCA 60.030 45.455 0.00 0.00 35.28 4.41
1020 1664 3.016031 TCGATGCATGCATTTACCTGTT 58.984 40.909 32.60 9.63 36.70 3.16
1029 1673 5.239963 TCAGTTTTCATATCGATGCATGCAT 59.760 36.000 32.66 32.66 39.69 3.96
1030 1674 4.575645 TCAGTTTTCATATCGATGCATGCA 59.424 37.500 25.04 25.04 32.62 3.96
1031 1675 5.099484 TCAGTTTTCATATCGATGCATGC 57.901 39.130 11.82 11.82 32.62 4.06
1033 1677 5.614308 TCCTCAGTTTTCATATCGATGCAT 58.386 37.500 8.54 0.00 32.62 3.96
1034 1678 5.022282 TCCTCAGTTTTCATATCGATGCA 57.978 39.130 8.54 0.00 32.62 3.96
1036 1680 7.278646 TGTTTCTCCTCAGTTTTCATATCGATG 59.721 37.037 8.54 0.00 0.00 3.84
1037 1681 7.331026 TGTTTCTCCTCAGTTTTCATATCGAT 58.669 34.615 2.16 2.16 0.00 3.59
1038 1682 6.697395 TGTTTCTCCTCAGTTTTCATATCGA 58.303 36.000 0.00 0.00 0.00 3.59
1039 1683 6.968131 TGTTTCTCCTCAGTTTTCATATCG 57.032 37.500 0.00 0.00 0.00 2.92
1040 1684 8.950210 TCATTGTTTCTCCTCAGTTTTCATATC 58.050 33.333 0.00 0.00 0.00 1.63
1041 1685 8.868522 TCATTGTTTCTCCTCAGTTTTCATAT 57.131 30.769 0.00 0.00 0.00 1.78
1042 1686 7.391554 CCTCATTGTTTCTCCTCAGTTTTCATA 59.608 37.037 0.00 0.00 0.00 2.15
1043 1687 6.208204 CCTCATTGTTTCTCCTCAGTTTTCAT 59.792 38.462 0.00 0.00 0.00 2.57
1044 1688 5.532406 CCTCATTGTTTCTCCTCAGTTTTCA 59.468 40.000 0.00 0.00 0.00 2.69
1066 1710 2.821969 CTGATAACCAAAACTGCTGCCT 59.178 45.455 0.00 0.00 0.00 4.75
1073 1717 6.403866 TGCATTTGTCTGATAACCAAAACT 57.596 33.333 0.00 0.00 32.39 2.66
1135 1782 0.315886 ACACCATCGACGCACAACTA 59.684 50.000 0.00 0.00 0.00 2.24
1442 2089 2.359354 GCCACCATGTACACGCCA 60.359 61.111 0.00 0.00 0.00 5.69
1526 2173 2.105128 GCGAGGTCCTGGATGTCG 59.895 66.667 20.35 20.35 0.00 4.35
1637 2284 7.808381 GCAGAAACTTTGAGGAGGTTTAATTAC 59.192 37.037 0.00 0.00 34.00 1.89
1638 2285 7.724061 AGCAGAAACTTTGAGGAGGTTTAATTA 59.276 33.333 0.00 0.00 34.00 1.40
1639 2286 6.551227 AGCAGAAACTTTGAGGAGGTTTAATT 59.449 34.615 0.00 0.00 34.00 1.40
1640 2287 6.071320 AGCAGAAACTTTGAGGAGGTTTAAT 58.929 36.000 0.00 0.00 34.00 1.40
1641 2288 5.445964 AGCAGAAACTTTGAGGAGGTTTAA 58.554 37.500 0.00 0.00 34.00 1.52
1642 2289 5.048846 AGCAGAAACTTTGAGGAGGTTTA 57.951 39.130 0.00 0.00 34.00 2.01
1643 2290 3.885901 GAGCAGAAACTTTGAGGAGGTTT 59.114 43.478 0.00 0.00 36.12 3.27
1644 2291 3.137360 AGAGCAGAAACTTTGAGGAGGTT 59.863 43.478 0.00 0.00 0.00 3.50
1645 2292 2.708325 AGAGCAGAAACTTTGAGGAGGT 59.292 45.455 0.00 0.00 0.00 3.85
1646 2293 3.072944 CAGAGCAGAAACTTTGAGGAGG 58.927 50.000 0.00 0.00 0.00 4.30
1647 2294 4.000331 TCAGAGCAGAAACTTTGAGGAG 58.000 45.455 0.00 0.00 0.00 3.69
1648 2295 4.422073 TTCAGAGCAGAAACTTTGAGGA 57.578 40.909 0.00 0.00 32.91 3.71
1657 2304 4.130118 GGTCTTCAGTTTCAGAGCAGAAA 58.870 43.478 0.00 0.00 37.46 2.52
1658 2305 3.495100 GGGTCTTCAGTTTCAGAGCAGAA 60.495 47.826 0.00 0.00 38.97 3.02
1659 2306 2.037772 GGGTCTTCAGTTTCAGAGCAGA 59.962 50.000 0.00 0.00 38.97 4.26
1660 2307 2.421619 GGGTCTTCAGTTTCAGAGCAG 58.578 52.381 0.00 0.00 38.97 4.24
1661 2308 1.072331 GGGGTCTTCAGTTTCAGAGCA 59.928 52.381 0.00 0.00 38.97 4.26
1662 2309 1.814793 GGGGTCTTCAGTTTCAGAGC 58.185 55.000 0.00 0.00 36.90 4.09
1663 2310 1.941668 GCGGGGTCTTCAGTTTCAGAG 60.942 57.143 0.00 0.00 0.00 3.35
1664 2311 0.034896 GCGGGGTCTTCAGTTTCAGA 59.965 55.000 0.00 0.00 0.00 3.27
1665 2312 1.291877 CGCGGGGTCTTCAGTTTCAG 61.292 60.000 0.00 0.00 0.00 3.02
1666 2313 1.301401 CGCGGGGTCTTCAGTTTCA 60.301 57.895 0.00 0.00 0.00 2.69
1667 2314 2.677979 GCGCGGGGTCTTCAGTTTC 61.678 63.158 8.83 0.00 0.00 2.78
1668 2315 2.668550 GCGCGGGGTCTTCAGTTT 60.669 61.111 8.83 0.00 0.00 2.66
1671 2318 3.636313 TTACGCGCGGGGTCTTCAG 62.636 63.158 35.22 1.83 0.00 3.02
1672 2319 3.636313 CTTACGCGCGGGGTCTTCA 62.636 63.158 35.22 7.02 0.00 3.02
1673 2320 2.884207 CTTACGCGCGGGGTCTTC 60.884 66.667 35.22 0.00 0.00 2.87
1674 2321 4.446413 CCTTACGCGCGGGGTCTT 62.446 66.667 35.22 14.64 0.00 3.01
1676 2323 4.747529 AACCTTACGCGCGGGGTC 62.748 66.667 35.22 0.00 0.00 4.46
1677 2324 4.747529 GAACCTTACGCGCGGGGT 62.748 66.667 35.22 31.49 0.00 4.95
1678 2325 4.745751 TGAACCTTACGCGCGGGG 62.746 66.667 35.22 30.85 0.00 5.73
1679 2326 3.186047 CTGAACCTTACGCGCGGG 61.186 66.667 35.22 26.99 0.00 6.13
1680 2327 2.431942 ACTGAACCTTACGCGCGG 60.432 61.111 35.22 18.70 0.00 6.46
1681 2328 1.076533 ATCACTGAACCTTACGCGCG 61.077 55.000 30.96 30.96 0.00 6.86
1682 2329 0.645868 GATCACTGAACCTTACGCGC 59.354 55.000 5.73 0.00 0.00 6.86
1683 2330 0.914551 CGATCACTGAACCTTACGCG 59.085 55.000 3.53 3.53 0.00 6.01
1684 2331 1.278238 CCGATCACTGAACCTTACGC 58.722 55.000 0.00 0.00 0.00 4.42
1685 2332 1.278238 GCCGATCACTGAACCTTACG 58.722 55.000 0.00 0.00 0.00 3.18
1686 2333 1.135199 TCGCCGATCACTGAACCTTAC 60.135 52.381 0.00 0.00 0.00 2.34
1687 2334 1.135199 GTCGCCGATCACTGAACCTTA 60.135 52.381 0.00 0.00 0.00 2.69
1688 2335 0.389948 GTCGCCGATCACTGAACCTT 60.390 55.000 0.00 0.00 0.00 3.50
1689 2336 1.215647 GTCGCCGATCACTGAACCT 59.784 57.895 0.00 0.00 0.00 3.50
1690 2337 1.080093 TGTCGCCGATCACTGAACC 60.080 57.895 0.00 0.00 0.00 3.62
1691 2338 0.388649 AGTGTCGCCGATCACTGAAC 60.389 55.000 17.36 0.00 42.30 3.18
1692 2339 1.170442 TAGTGTCGCCGATCACTGAA 58.830 50.000 23.29 9.24 43.46 3.02
1693 2340 1.135489 GTTAGTGTCGCCGATCACTGA 60.135 52.381 23.29 16.54 43.46 3.41
1694 2341 1.269166 GTTAGTGTCGCCGATCACTG 58.731 55.000 23.29 0.00 43.46 3.66
1695 2342 0.179171 CGTTAGTGTCGCCGATCACT 60.179 55.000 20.33 20.33 45.21 3.41
1696 2343 0.179181 TCGTTAGTGTCGCCGATCAC 60.179 55.000 10.48 10.48 35.13 3.06
1697 2344 0.179181 GTCGTTAGTGTCGCCGATCA 60.179 55.000 0.00 0.00 0.00 2.92
1698 2345 0.098376 AGTCGTTAGTGTCGCCGATC 59.902 55.000 0.00 0.00 0.00 3.69
1699 2346 0.179171 CAGTCGTTAGTGTCGCCGAT 60.179 55.000 0.00 0.00 0.00 4.18
1700 2347 1.208358 CAGTCGTTAGTGTCGCCGA 59.792 57.895 0.00 0.00 0.00 5.54
1701 2348 1.063951 GTCAGTCGTTAGTGTCGCCG 61.064 60.000 0.00 0.00 0.00 6.46
1702 2349 0.240411 AGTCAGTCGTTAGTGTCGCC 59.760 55.000 0.00 0.00 0.00 5.54
1703 2350 1.328439 CAGTCAGTCGTTAGTGTCGC 58.672 55.000 0.00 0.00 0.00 5.19
1704 2351 1.266175 ACCAGTCAGTCGTTAGTGTCG 59.734 52.381 0.00 0.00 0.00 4.35
1705 2352 3.004524 AGAACCAGTCAGTCGTTAGTGTC 59.995 47.826 0.00 0.00 0.00 3.67
1706 2353 2.957006 AGAACCAGTCAGTCGTTAGTGT 59.043 45.455 0.00 0.00 0.00 3.55
1707 2354 3.644884 AGAACCAGTCAGTCGTTAGTG 57.355 47.619 0.00 0.00 0.00 2.74
1708 2355 4.215827 CAGTAGAACCAGTCAGTCGTTAGT 59.784 45.833 0.00 0.00 0.00 2.24
1709 2356 4.379603 CCAGTAGAACCAGTCAGTCGTTAG 60.380 50.000 0.00 0.00 0.00 2.34
1710 2357 3.504906 CCAGTAGAACCAGTCAGTCGTTA 59.495 47.826 0.00 0.00 0.00 3.18
1711 2358 2.296471 CCAGTAGAACCAGTCAGTCGTT 59.704 50.000 0.00 0.00 0.00 3.85
1712 2359 1.887198 CCAGTAGAACCAGTCAGTCGT 59.113 52.381 0.00 0.00 0.00 4.34
1713 2360 1.402984 GCCAGTAGAACCAGTCAGTCG 60.403 57.143 0.00 0.00 0.00 4.18
1714 2361 1.618837 TGCCAGTAGAACCAGTCAGTC 59.381 52.381 0.00 0.00 0.00 3.51
1715 2362 1.717032 TGCCAGTAGAACCAGTCAGT 58.283 50.000 0.00 0.00 0.00 3.41
1716 2363 2.839486 TTGCCAGTAGAACCAGTCAG 57.161 50.000 0.00 0.00 0.00 3.51
1717 2364 3.411446 CAATTGCCAGTAGAACCAGTCA 58.589 45.455 0.00 0.00 0.00 3.41
1718 2365 2.749621 CCAATTGCCAGTAGAACCAGTC 59.250 50.000 0.00 0.00 0.00 3.51
1719 2366 2.108250 ACCAATTGCCAGTAGAACCAGT 59.892 45.455 0.00 0.00 0.00 4.00
1720 2367 2.795329 ACCAATTGCCAGTAGAACCAG 58.205 47.619 0.00 0.00 0.00 4.00
1721 2368 2.969821 ACCAATTGCCAGTAGAACCA 57.030 45.000 0.00 0.00 0.00 3.67
1722 2369 4.440112 GCATAACCAATTGCCAGTAGAACC 60.440 45.833 0.00 0.00 32.66 3.62
1723 2370 4.157656 TGCATAACCAATTGCCAGTAGAAC 59.842 41.667 0.00 0.00 38.08 3.01
1724 2371 4.339748 TGCATAACCAATTGCCAGTAGAA 58.660 39.130 0.00 0.00 38.08 2.10
1725 2372 3.947196 CTGCATAACCAATTGCCAGTAGA 59.053 43.478 0.00 0.00 38.08 2.59
1726 2373 3.067180 CCTGCATAACCAATTGCCAGTAG 59.933 47.826 0.00 0.00 38.08 2.57
1727 2374 3.023119 CCTGCATAACCAATTGCCAGTA 58.977 45.455 0.00 0.00 38.08 2.74
1728 2375 1.826720 CCTGCATAACCAATTGCCAGT 59.173 47.619 0.00 0.00 38.08 4.00
1729 2376 1.472026 GCCTGCATAACCAATTGCCAG 60.472 52.381 0.00 0.00 38.08 4.85
1730 2377 0.536260 GCCTGCATAACCAATTGCCA 59.464 50.000 0.00 0.00 38.08 4.92
1731 2378 0.826062 AGCCTGCATAACCAATTGCC 59.174 50.000 0.00 0.00 38.08 4.52
1732 2379 1.472026 CCAGCCTGCATAACCAATTGC 60.472 52.381 0.00 0.00 39.33 3.56
1733 2380 1.472026 GCCAGCCTGCATAACCAATTG 60.472 52.381 0.00 0.00 0.00 2.32
1734 2381 0.826062 GCCAGCCTGCATAACCAATT 59.174 50.000 0.00 0.00 0.00 2.32
1735 2382 1.044790 GGCCAGCCTGCATAACCAAT 61.045 55.000 0.00 0.00 0.00 3.16
1736 2383 1.682005 GGCCAGCCTGCATAACCAA 60.682 57.895 0.00 0.00 0.00 3.67
1737 2384 2.044053 GGCCAGCCTGCATAACCA 60.044 61.111 0.00 0.00 0.00 3.67
1738 2385 3.211963 CGGCCAGCCTGCATAACC 61.212 66.667 2.24 0.00 0.00 2.85
1739 2386 3.211963 CCGGCCAGCCTGCATAAC 61.212 66.667 2.24 0.00 0.00 1.89
1740 2387 3.405093 CTCCGGCCAGCCTGCATAA 62.405 63.158 2.24 0.00 0.00 1.90
1741 2388 3.865383 CTCCGGCCAGCCTGCATA 61.865 66.667 2.24 0.00 0.00 3.14
2023 2670 2.069430 GGGAGCTGAGGGAAGGGAG 61.069 68.421 0.00 0.00 0.00 4.30
2093 2741 3.941035 GCACAAAGCAAAGCGCAT 58.059 50.000 11.47 0.00 46.13 4.73
2151 2799 3.395669 GCCATGTCGCGGTAGAAC 58.604 61.111 6.13 0.00 0.00 3.01
2188 2836 4.099170 CGTCGGCTCGAACTCCGT 62.099 66.667 16.60 0.00 45.44 4.69
2433 3081 0.942410 GGTTTCAGTACGCGCAGACA 60.942 55.000 5.73 0.00 0.00 3.41
2439 3087 1.136721 CGTCTTTGGTTTCAGTACGCG 60.137 52.381 3.53 3.53 0.00 6.01
2516 3165 2.209690 TGGAACGGAGGGAAAAATCC 57.790 50.000 0.00 0.00 0.00 3.01
2580 3229 3.378742 TGAACAACCACACTAAAATGCGT 59.621 39.130 0.00 0.00 0.00 5.24
2588 3237 3.181458 GGAAGGAGTGAACAACCACACTA 60.181 47.826 0.00 0.00 45.54 2.74
2595 3244 1.967319 TGCTGGAAGGAGTGAACAAC 58.033 50.000 0.00 0.00 0.00 3.32
2606 3255 3.389329 AGGGAGTACATACATGCTGGAAG 59.611 47.826 0.00 0.00 0.00 3.46
2610 3260 2.288457 CGGAGGGAGTACATACATGCTG 60.288 54.545 0.00 0.00 0.00 4.41
2611 3261 1.964223 CGGAGGGAGTACATACATGCT 59.036 52.381 0.00 0.00 0.00 3.79
2612 3262 1.687123 ACGGAGGGAGTACATACATGC 59.313 52.381 0.00 0.00 0.00 4.06
2613 3263 3.243771 GGAACGGAGGGAGTACATACATG 60.244 52.174 0.00 0.00 0.00 3.21
2614 3264 2.963782 GGAACGGAGGGAGTACATACAT 59.036 50.000 0.00 0.00 0.00 2.29
2615 3265 2.024655 AGGAACGGAGGGAGTACATACA 60.025 50.000 0.00 0.00 0.00 2.29
2616 3266 2.664015 AGGAACGGAGGGAGTACATAC 58.336 52.381 0.00 0.00 0.00 2.39
2617 3267 4.524802 TTAGGAACGGAGGGAGTACATA 57.475 45.455 0.00 0.00 0.00 2.29
2618 3268 3.393426 TTAGGAACGGAGGGAGTACAT 57.607 47.619 0.00 0.00 0.00 2.29
2619 3269 2.905415 TTAGGAACGGAGGGAGTACA 57.095 50.000 0.00 0.00 0.00 2.90
2620 3270 4.892345 AGTATTTAGGAACGGAGGGAGTAC 59.108 45.833 0.00 0.00 0.00 2.73
2621 3271 5.134725 AGTATTTAGGAACGGAGGGAGTA 57.865 43.478 0.00 0.00 0.00 2.59
2622 3272 3.991683 AGTATTTAGGAACGGAGGGAGT 58.008 45.455 0.00 0.00 0.00 3.85
2623 3273 4.161754 ACAAGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
2624 3274 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
2625 3275 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
2626 3276 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
2627 3277 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
2628 3278 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
2629 3279 8.248945 TCTAGAAAGACAAGTATTTAGGAACGG 58.751 37.037 0.00 0.00 0.00 4.44
2653 3303 9.302345 CGTATGTAGTAGTCATTTGAAATGTCT 57.698 33.333 18.62 18.62 0.00 3.41
2654 3304 8.540492 CCGTATGTAGTAGTCATTTGAAATGTC 58.460 37.037 16.62 11.74 0.00 3.06
2655 3305 8.255206 TCCGTATGTAGTAGTCATTTGAAATGT 58.745 33.333 16.62 2.38 0.00 2.71
2656 3306 8.642908 TCCGTATGTAGTAGTCATTTGAAATG 57.357 34.615 11.54 11.54 0.00 2.32
2657 3307 9.261180 CATCCGTATGTAGTAGTCATTTGAAAT 57.739 33.333 0.00 0.00 0.00 2.17
2658 3308 8.255206 ACATCCGTATGTAGTAGTCATTTGAAA 58.745 33.333 0.00 0.00 44.66 2.69
2659 3309 7.778083 ACATCCGTATGTAGTAGTCATTTGAA 58.222 34.615 0.00 0.00 44.66 2.69
2660 3310 7.342769 ACATCCGTATGTAGTAGTCATTTGA 57.657 36.000 0.00 0.00 44.66 2.69
2661 3311 7.322938 CGTACATCCGTATGTAGTAGTCATTTG 59.677 40.741 0.46 0.00 46.68 2.32
2662 3312 7.012704 ACGTACATCCGTATGTAGTAGTCATTT 59.987 37.037 0.46 0.00 46.68 2.32
2663 3313 6.484643 ACGTACATCCGTATGTAGTAGTCATT 59.515 38.462 0.46 0.00 46.68 2.57
2664 3314 5.994054 ACGTACATCCGTATGTAGTAGTCAT 59.006 40.000 0.46 0.00 46.68 3.06
2665 3315 5.359756 ACGTACATCCGTATGTAGTAGTCA 58.640 41.667 0.46 0.00 46.68 3.41
2666 3316 5.914085 ACGTACATCCGTATGTAGTAGTC 57.086 43.478 0.46 0.00 46.68 2.59
2672 3322 8.552083 AATATGTCTACGTACATCCGTATGTA 57.448 34.615 7.22 0.00 44.35 2.29
2674 3324 8.738199 AAAATATGTCTACGTACATCCGTATG 57.262 34.615 7.22 0.00 41.95 2.39
2676 3326 9.271828 TCTAAAATATGTCTACGTACATCCGTA 57.728 33.333 7.22 0.00 42.00 4.02
2677 3327 8.158169 TCTAAAATATGTCTACGTACATCCGT 57.842 34.615 7.22 0.00 44.50 4.69
2678 3328 8.288208 ACTCTAAAATATGTCTACGTACATCCG 58.712 37.037 7.22 0.00 40.52 4.18
2679 3329 9.395707 CACTCTAAAATATGTCTACGTACATCC 57.604 37.037 7.22 0.00 40.52 3.51
2680 3330 9.947669 ACACTCTAAAATATGTCTACGTACATC 57.052 33.333 7.22 0.00 40.52 3.06
2703 3353 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
2704 3354 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
2705 3355 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
2706 3356 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
2707 3357 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
2708 3358 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
2709 3359 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
2710 3360 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
2711 3361 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
2712 3362 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
2713 3363 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
2714 3364 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
2715 3365 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
2716 3366 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
2717 3367 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
2718 3368 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
2719 3369 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
2720 3370 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
2721 3371 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
2722 3372 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
2723 3373 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
2724 3374 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
2725 3375 6.534059 CATTTCAACAAGTGACTACATACGG 58.466 40.000 0.00 0.00 35.39 4.02
2726 3376 6.015504 GCATTTCAACAAGTGACTACATACG 58.984 40.000 0.00 0.00 35.39 3.06
2727 3377 6.149474 AGGCATTTCAACAAGTGACTACATAC 59.851 38.462 0.00 0.00 35.84 2.39
2728 3378 6.237901 AGGCATTTCAACAAGTGACTACATA 58.762 36.000 0.00 0.00 35.84 2.29
2729 3379 5.072741 AGGCATTTCAACAAGTGACTACAT 58.927 37.500 0.00 0.00 35.84 2.29
2730 3380 4.460263 AGGCATTTCAACAAGTGACTACA 58.540 39.130 0.00 0.00 35.84 2.74
2731 3381 5.932303 TCTAGGCATTTCAACAAGTGACTAC 59.068 40.000 0.00 0.00 38.51 2.73
2732 3382 6.109156 TCTAGGCATTTCAACAAGTGACTA 57.891 37.500 0.00 0.00 38.51 2.59
2733 3383 4.973168 TCTAGGCATTTCAACAAGTGACT 58.027 39.130 0.00 0.00 40.60 3.41
2734 3384 5.689383 TTCTAGGCATTTCAACAAGTGAC 57.311 39.130 0.00 0.00 35.39 3.67
2735 3385 6.017109 GTCTTTCTAGGCATTTCAACAAGTGA 60.017 38.462 0.00 0.00 0.00 3.41
2736 3386 6.145535 GTCTTTCTAGGCATTTCAACAAGTG 58.854 40.000 0.00 0.00 0.00 3.16
2737 3387 5.827797 TGTCTTTCTAGGCATTTCAACAAGT 59.172 36.000 0.00 0.00 29.10 3.16
2738 3388 6.317789 TGTCTTTCTAGGCATTTCAACAAG 57.682 37.500 0.00 0.00 29.10 3.16
2739 3389 6.321181 ACTTGTCTTTCTAGGCATTTCAACAA 59.679 34.615 0.00 0.00 35.56 2.83
2740 3390 5.827797 ACTTGTCTTTCTAGGCATTTCAACA 59.172 36.000 0.00 0.00 35.56 3.33
2741 3391 6.319141 ACTTGTCTTTCTAGGCATTTCAAC 57.681 37.500 0.00 0.00 35.56 3.18
2742 3392 8.635765 AATACTTGTCTTTCTAGGCATTTCAA 57.364 30.769 0.00 0.00 35.56 2.69
2743 3393 8.635765 AAATACTTGTCTTTCTAGGCATTTCA 57.364 30.769 0.00 0.00 35.56 2.69
2745 3395 9.178758 CCTAAATACTTGTCTTTCTAGGCATTT 57.821 33.333 0.00 0.00 35.56 2.32
2746 3396 8.548877 TCCTAAATACTTGTCTTTCTAGGCATT 58.451 33.333 0.00 0.00 35.56 3.56
2747 3397 8.090788 TCCTAAATACTTGTCTTTCTAGGCAT 57.909 34.615 0.00 0.00 35.56 4.40
2748 3398 7.490657 TCCTAAATACTTGTCTTTCTAGGCA 57.509 36.000 0.00 0.00 33.22 4.75
2749 3399 7.010275 CGTTCCTAAATACTTGTCTTTCTAGGC 59.990 40.741 0.00 0.00 0.00 3.93
2750 3400 7.491696 CCGTTCCTAAATACTTGTCTTTCTAGG 59.508 40.741 0.00 0.00 0.00 3.02
2751 3401 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
2752 3402 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
2753 3403 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
2754 3404 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
2755 3405 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
2756 3406 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
2757 3407 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
2758 3408 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
2759 3409 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
2760 3410 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
2761 3411 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
2762 3412 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
2763 3413 4.892345 ACTACTCCCTCCGTTCCTAAATAC 59.108 45.833 0.00 0.00 0.00 1.89
2764 3414 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
2765 3415 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
2766 3416 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
2767 3417 3.245371 TGAACTACTCCCTCCGTTCCTAA 60.245 47.826 0.00 0.00 35.97 2.69
2768 3418 2.309755 TGAACTACTCCCTCCGTTCCTA 59.690 50.000 0.00 0.00 35.97 2.94
2769 3419 1.076677 TGAACTACTCCCTCCGTTCCT 59.923 52.381 0.00 0.00 35.97 3.36
2770 3420 1.553706 TGAACTACTCCCTCCGTTCC 58.446 55.000 0.00 0.00 35.97 3.62
2771 3421 5.068723 TCAATATGAACTACTCCCTCCGTTC 59.931 44.000 0.00 0.00 37.02 3.95
2772 3422 4.960469 TCAATATGAACTACTCCCTCCGTT 59.040 41.667 0.00 0.00 0.00 4.44
2773 3423 4.543689 TCAATATGAACTACTCCCTCCGT 58.456 43.478 0.00 0.00 0.00 4.69
2774 3424 5.531122 TTCAATATGAACTACTCCCTCCG 57.469 43.478 0.00 0.00 30.26 4.63
2813 3463 4.873827 GCATTTCCTCCGTTCACTGTTATA 59.126 41.667 0.00 0.00 0.00 0.98
2818 3468 1.522668 TGCATTTCCTCCGTTCACTG 58.477 50.000 0.00 0.00 0.00 3.66
2896 3547 7.796148 TGCCCCCTGATGATATATAGATTATGT 59.204 37.037 0.00 0.00 0.00 2.29
2976 3627 1.906333 ACGGTTTGGATGGGGTTGC 60.906 57.895 0.00 0.00 0.00 4.17
3070 3721 7.869937 GCTCATATCTACTGTGTTGTGTCATAT 59.130 37.037 0.00 0.00 0.00 1.78
3071 3722 7.203218 GCTCATATCTACTGTGTTGTGTCATA 58.797 38.462 0.00 0.00 0.00 2.15
3194 3845 1.838073 TTCTTTCCTCCCCGGCTGTC 61.838 60.000 0.00 0.00 0.00 3.51
3218 3869 0.471191 AATGCGGGAGATGATCAGCA 59.529 50.000 14.38 10.56 43.87 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.