Multiple sequence alignment - TraesCS1B01G196700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G196700 chr1B 100.000 6725 0 0 1 6725 354220758 354227482 0.000000e+00 12419.0
1 TraesCS1B01G196700 chr1B 87.324 71 7 2 1990 2059 322473553 322473484 5.590000e-11 80.5
2 TraesCS1B01G196700 chr1D 95.438 2148 72 10 2139 4275 258587485 258585353 0.000000e+00 3400.0
3 TraesCS1B01G196700 chr1D 89.721 1683 78 26 5095 6725 258584161 258582522 0.000000e+00 2061.0
4 TraesCS1B01G196700 chr1D 92.958 852 45 4 1040 1888 258588334 258587495 0.000000e+00 1227.0
5 TraesCS1B01G196700 chr1D 91.332 773 40 9 4339 5089 258585351 258584584 0.000000e+00 1031.0
6 TraesCS1B01G196700 chr1D 91.635 526 38 5 1 525 258589500 258588980 0.000000e+00 723.0
7 TraesCS1B01G196700 chr1D 93.939 297 14 2 550 845 258588990 258588697 4.780000e-121 446.0
8 TraesCS1B01G196700 chr1D 87.324 71 7 2 1990 2059 223162342 223162273 5.590000e-11 80.5
9 TraesCS1B01G196700 chr1A 93.435 2239 87 17 2055 4270 342380810 342383011 0.000000e+00 3265.0
10 TraesCS1B01G196700 chr1A 89.573 1755 111 31 267 1999 342379112 342380816 0.000000e+00 2161.0
11 TraesCS1B01G196700 chr1A 88.607 1378 63 46 5095 6404 342384286 342385637 0.000000e+00 1589.0
12 TraesCS1B01G196700 chr1A 94.021 669 35 5 4339 5006 342383019 342383683 0.000000e+00 1009.0
13 TraesCS1B01G196700 chr1A 94.595 259 7 2 6472 6725 342386242 342386498 1.760000e-105 394.0
14 TraesCS1B01G196700 chr1A 93.182 88 6 0 5011 5098 342383769 342383856 5.470000e-26 130.0
15 TraesCS1B01G196700 chr7B 83.843 916 106 20 4120 5014 547966499 547965605 0.000000e+00 833.0
16 TraesCS1B01G196700 chr7B 84.524 252 21 13 5011 5250 547965525 547965280 4.060000e-57 233.0
17 TraesCS1B01G196700 chr7B 85.321 109 8 3 5641 5743 547965104 547964998 9.220000e-19 106.0
18 TraesCS1B01G196700 chr7B 88.060 67 5 1 1996 2059 99658454 99658388 7.230000e-10 76.8
19 TraesCS1B01G196700 chr5B 83.764 542 61 11 2587 3105 492792608 492793145 7.840000e-134 488.0
20 TraesCS1B01G196700 chr5B 89.231 65 6 1 1997 2061 57685332 57685269 5.590000e-11 80.5
21 TraesCS1B01G196700 chr7A 82.909 550 63 14 2584 3110 386392593 386393134 3.670000e-127 466.0
22 TraesCS1B01G196700 chr7A 82.514 549 65 14 2578 3103 386500227 386500767 2.860000e-123 453.0
23 TraesCS1B01G196700 chr7A 81.455 550 65 15 2578 3103 386427087 386427623 3.750000e-112 416.0
24 TraesCS1B01G196700 chr4B 82.202 545 67 12 2584 3105 560938966 560938429 6.190000e-120 442.0
25 TraesCS1B01G196700 chr4B 83.617 470 52 10 2584 3030 244772948 244772481 1.040000e-112 418.0
26 TraesCS1B01G196700 chr4B 100.000 32 0 0 1990 2021 86999553 86999584 7.280000e-05 60.2
27 TraesCS1B01G196700 chr3D 85.065 308 42 3 1 307 590364724 590365028 1.820000e-80 311.0
28 TraesCS1B01G196700 chr3D 93.651 63 4 0 1997 2059 434067979 434067917 2.000000e-15 95.3
29 TraesCS1B01G196700 chr3D 90.411 73 3 1 1991 2059 511330316 511330388 7.180000e-15 93.5
30 TraesCS1B01G196700 chr2B 76.837 626 68 26 4047 4662 23309224 23309782 1.430000e-71 281.0
31 TraesCS1B01G196700 chr7D 85.714 266 22 7 3149 3398 121681640 121681375 4.000000e-67 267.0
32 TraesCS1B01G196700 chr7D 90.840 131 9 1 5162 5289 121672301 121672171 8.970000e-39 172.0
33 TraesCS1B01G196700 chr7D 88.172 93 9 2 5071 5162 121681055 121680964 7.130000e-20 110.0
34 TraesCS1B01G196700 chr7D 96.667 60 2 0 1996 2055 34234258 34234317 4.290000e-17 100.0
35 TraesCS1B01G196700 chr6A 95.238 63 3 0 1997 2059 594732800 594732738 4.290000e-17 100.0
36 TraesCS1B01G196700 chr5A 92.857 56 1 3 2009 2064 374477345 374477293 2.010000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G196700 chr1B 354220758 354227482 6724 False 12419.000000 12419 100.000000 1 6725 1 chr1B.!!$F1 6724
1 TraesCS1B01G196700 chr1D 258582522 258589500 6978 True 1481.333333 3400 92.503833 1 6725 6 chr1D.!!$R2 6724
2 TraesCS1B01G196700 chr1A 342379112 342386498 7386 False 1424.666667 3265 92.235500 267 6725 6 chr1A.!!$F1 6458
3 TraesCS1B01G196700 chr7B 547964998 547966499 1501 True 390.666667 833 84.562667 4120 5743 3 chr7B.!!$R2 1623
4 TraesCS1B01G196700 chr5B 492792608 492793145 537 False 488.000000 488 83.764000 2587 3105 1 chr5B.!!$F1 518
5 TraesCS1B01G196700 chr7A 386392593 386393134 541 False 466.000000 466 82.909000 2584 3110 1 chr7A.!!$F1 526
6 TraesCS1B01G196700 chr7A 386500227 386500767 540 False 453.000000 453 82.514000 2578 3103 1 chr7A.!!$F3 525
7 TraesCS1B01G196700 chr7A 386427087 386427623 536 False 416.000000 416 81.455000 2578 3103 1 chr7A.!!$F2 525
8 TraesCS1B01G196700 chr4B 560938429 560938966 537 True 442.000000 442 82.202000 2584 3105 1 chr4B.!!$R2 521
9 TraesCS1B01G196700 chr2B 23309224 23309782 558 False 281.000000 281 76.837000 4047 4662 1 chr2B.!!$F1 615

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
199 200 0.105760 AACCTGCCCCACATGAACAA 60.106 50.000 0.00 0.0 0.00 2.83 F
819 828 0.179020 TATGCCATTTCGGGGAGCAG 60.179 55.000 0.00 0.0 36.80 4.24 F
2060 2268 0.186873 TACGGGATGGAGGGAGTACC 59.813 60.000 0.00 0.0 40.67 3.34 F
2190 2403 1.340991 TGGGACTGCTAGAAAATGGCC 60.341 52.381 0.00 0.0 33.66 5.36 F
3734 3995 1.377856 GCTTGCAGGTTCCCTCCTC 60.378 63.158 0.00 0.0 35.37 3.71 F
4314 4580 1.137872 AGCAACATCTAGAAGGCCTCG 59.862 52.381 5.23 0.0 0.00 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2041 2249 0.186873 GGTACTCCCTCCATCCCGTA 59.813 60.0 0.00 0.0 0.00 4.02 R
2642 2872 0.250553 CAACGGTAACCCCTTCAGCA 60.251 55.0 0.00 0.0 0.00 4.41 R
3943 4204 0.182299 CTCTCCAGGGGCCTGAAATC 59.818 60.0 0.84 0.0 46.30 2.17 R
3952 4213 0.394899 GATGTTTGGCTCTCCAGGGG 60.395 60.0 0.00 0.0 44.53 4.79 R
5509 6338 0.107897 TTGGATATGCTCGCGGTGTT 60.108 50.0 6.13 0.0 0.00 3.32 R
6203 7086 0.811616 CTCCTAACACGCATGAGCCC 60.812 60.0 0.00 0.0 37.52 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 8.164058 GAAGAATAAGAAATCTTCCTCCATGG 57.836 38.462 4.97 4.97 43.64 3.66
98 99 1.142870 CAGACAGGGACCAAGACCAAA 59.857 52.381 0.00 0.00 0.00 3.28
116 117 7.573710 AGACCAAAAGCAACCTATGTATATGA 58.426 34.615 0.00 0.00 0.00 2.15
153 154 5.652994 TTTCCTTGCGGCTTATATTTGTT 57.347 34.783 0.00 0.00 0.00 2.83
185 186 8.873215 AGATTCACTTATCGTACATTAACCTG 57.127 34.615 0.00 0.00 0.00 4.00
189 190 2.632987 ATCGTACATTAACCTGCCCC 57.367 50.000 0.00 0.00 0.00 5.80
191 192 1.065998 TCGTACATTAACCTGCCCCAC 60.066 52.381 0.00 0.00 0.00 4.61
192 193 1.339247 CGTACATTAACCTGCCCCACA 60.339 52.381 0.00 0.00 0.00 4.17
199 200 0.105760 AACCTGCCCCACATGAACAA 60.106 50.000 0.00 0.00 0.00 2.83
222 223 2.325583 TGCGACCTCACAAGAAAAGT 57.674 45.000 0.00 0.00 0.00 2.66
339 341 2.520465 ATCGGCGACCACAATCTGCA 62.520 55.000 13.76 0.00 0.00 4.41
346 348 2.777972 CCACAATCTGCATGCCCCG 61.778 63.158 16.68 3.68 0.00 5.73
367 369 3.738982 GTGCACATACCTGCCACATATA 58.261 45.455 13.17 0.00 36.21 0.86
368 370 4.326826 GTGCACATACCTGCCACATATAT 58.673 43.478 13.17 0.00 36.21 0.86
369 371 4.393062 GTGCACATACCTGCCACATATATC 59.607 45.833 13.17 0.00 36.21 1.63
371 373 4.323792 GCACATACCTGCCACATATATCCT 60.324 45.833 0.00 0.00 0.00 3.24
374 376 2.269940 ACCTGCCACATATATCCTCCC 58.730 52.381 0.00 0.00 0.00 4.30
376 378 2.555664 CTGCCACATATATCCTCCCCT 58.444 52.381 0.00 0.00 0.00 4.79
377 379 2.503356 CTGCCACATATATCCTCCCCTC 59.497 54.545 0.00 0.00 0.00 4.30
378 380 1.840635 GCCACATATATCCTCCCCTCC 59.159 57.143 0.00 0.00 0.00 4.30
379 381 2.830899 GCCACATATATCCTCCCCTCCA 60.831 54.545 0.00 0.00 0.00 3.86
380 382 3.531059 CCACATATATCCTCCCCTCCAA 58.469 50.000 0.00 0.00 0.00 3.53
381 383 3.264450 CCACATATATCCTCCCCTCCAAC 59.736 52.174 0.00 0.00 0.00 3.77
408 411 3.202906 TGACCTTGTGTTCACAGCTAAC 58.797 45.455 5.78 0.00 0.00 2.34
415 418 4.123506 TGTGTTCACAGCTAACGATCAAA 58.876 39.130 1.23 0.00 0.00 2.69
416 419 4.025229 TGTGTTCACAGCTAACGATCAAAC 60.025 41.667 1.23 0.00 0.00 2.93
417 420 4.025229 GTGTTCACAGCTAACGATCAAACA 60.025 41.667 0.00 0.00 0.00 2.83
419 422 5.107104 TGTTCACAGCTAACGATCAAACATC 60.107 40.000 0.00 0.00 0.00 3.06
420 423 4.820897 TCACAGCTAACGATCAAACATCT 58.179 39.130 0.00 0.00 0.00 2.90
421 424 4.627035 TCACAGCTAACGATCAAACATCTG 59.373 41.667 0.00 0.00 0.00 2.90
422 425 3.372206 ACAGCTAACGATCAAACATCTGC 59.628 43.478 0.00 0.00 0.00 4.26
423 426 3.371898 CAGCTAACGATCAAACATCTGCA 59.628 43.478 0.00 0.00 0.00 4.41
424 427 3.372206 AGCTAACGATCAAACATCTGCAC 59.628 43.478 0.00 0.00 0.00 4.57
425 428 3.125146 GCTAACGATCAAACATCTGCACA 59.875 43.478 0.00 0.00 0.00 4.57
426 429 3.542712 AACGATCAAACATCTGCACAC 57.457 42.857 0.00 0.00 0.00 3.82
427 430 2.493035 ACGATCAAACATCTGCACACA 58.507 42.857 0.00 0.00 0.00 3.72
428 431 2.224079 ACGATCAAACATCTGCACACAC 59.776 45.455 0.00 0.00 0.00 3.82
431 434 4.609947 GATCAAACATCTGCACACACAAA 58.390 39.130 0.00 0.00 0.00 2.83
455 458 1.447099 TACTACTTTGGCCCCCAACA 58.553 50.000 0.00 0.00 43.82 3.33
492 495 8.286097 GGTTATCAATCTCATTAGCTTTGCTAC 58.714 37.037 0.00 0.00 41.12 3.58
531 537 8.816640 AGAAATTTAAAAGCACAAGTGTATGG 57.183 30.769 1.79 0.00 0.00 2.74
538 544 5.886960 AAGCACAAGTGTATGGAAGATTC 57.113 39.130 1.79 0.00 0.00 2.52
539 545 3.935203 AGCACAAGTGTATGGAAGATTCG 59.065 43.478 1.79 0.00 0.00 3.34
543 549 4.695455 ACAAGTGTATGGAAGATTCGGTTG 59.305 41.667 0.00 0.00 0.00 3.77
547 553 4.809426 GTGTATGGAAGATTCGGTTGTAGG 59.191 45.833 0.00 0.00 0.00 3.18
548 554 2.396590 TGGAAGATTCGGTTGTAGGC 57.603 50.000 0.00 0.00 0.00 3.93
556 562 1.681538 TCGGTTGTAGGCAAAAGCAA 58.318 45.000 0.00 0.00 36.22 3.91
559 565 3.068873 TCGGTTGTAGGCAAAAGCAAAAT 59.931 39.130 0.00 0.00 36.22 1.82
565 571 7.201652 GGTTGTAGGCAAAAGCAAAATAAAACA 60.202 33.333 0.00 0.00 36.22 2.83
706 715 2.573369 TCTCAGAGATACAGCCGTACC 58.427 52.381 0.00 0.00 0.00 3.34
707 716 2.092592 TCTCAGAGATACAGCCGTACCA 60.093 50.000 0.00 0.00 0.00 3.25
708 717 2.022195 TCAGAGATACAGCCGTACCAC 58.978 52.381 0.00 0.00 0.00 4.16
709 718 1.749063 CAGAGATACAGCCGTACCACA 59.251 52.381 0.00 0.00 0.00 4.17
710 719 2.362397 CAGAGATACAGCCGTACCACAT 59.638 50.000 0.00 0.00 0.00 3.21
711 720 3.031736 AGAGATACAGCCGTACCACATT 58.968 45.455 0.00 0.00 0.00 2.71
757 766 5.867903 TTTGAAACTCAAACCCATGTCAT 57.132 34.783 0.00 0.00 41.02 3.06
819 828 0.179020 TATGCCATTTCGGGGAGCAG 60.179 55.000 0.00 0.00 36.80 4.24
828 837 3.797353 GGGGAGCAGCATCCGGAA 61.797 66.667 9.01 0.00 40.56 4.30
846 855 2.158608 GGAAGAGAGAGGAGAGAGAGGG 60.159 59.091 0.00 0.00 0.00 4.30
850 859 2.370189 GAGAGAGGAGAGAGAGGGAGAG 59.630 59.091 0.00 0.00 0.00 3.20
905 914 3.839432 GTAGCGAGGCGAGCCCTT 61.839 66.667 10.95 0.00 46.60 3.95
1248 1438 3.090532 GATCTGTCCCCGCCCCTT 61.091 66.667 0.00 0.00 0.00 3.95
1296 1491 2.025898 TGCATTCGCCATCAATGACAT 58.974 42.857 0.00 0.00 37.32 3.06
1398 1593 3.879998 TGATTAGTTGCTATTGGGCGAA 58.120 40.909 0.00 0.00 34.52 4.70
1458 1653 2.755836 TGCTTCAGTTTGCTTTCGTC 57.244 45.000 0.00 0.00 0.00 4.20
1471 1666 2.785679 CTTTCGTCGGATTTGGCATTC 58.214 47.619 0.00 0.00 0.00 2.67
1478 1673 1.605710 CGGATTTGGCATTCAGCTAGG 59.394 52.381 0.00 0.00 44.79 3.02
1494 1689 1.737793 CTAGGTGCGCTTTAAAGGTGG 59.262 52.381 16.78 0.00 0.00 4.61
1501 1696 1.778334 GCTTTAAAGGTGGCGGTTTG 58.222 50.000 16.78 0.00 0.00 2.93
1502 1697 1.778334 CTTTAAAGGTGGCGGTTTGC 58.222 50.000 7.37 0.00 45.38 3.68
1513 1708 0.854705 GCGGTTTGCTTCTGCTTTTG 59.145 50.000 0.00 0.00 41.73 2.44
1524 1719 3.129852 TCTGCTTTTGTTTGACGTGTG 57.870 42.857 0.00 0.00 0.00 3.82
1538 1733 1.136363 ACGTGTGCGATGAAAACGATG 60.136 47.619 0.00 0.00 42.00 3.84
1541 1736 2.093625 GTGTGCGATGAAAACGATGCTA 59.906 45.455 0.00 0.00 31.90 3.49
1542 1737 2.348362 TGTGCGATGAAAACGATGCTAG 59.652 45.455 0.00 0.00 31.90 3.42
1634 1832 7.181845 TCCATTTTATAGGTTCATTTTTGCCCT 59.818 33.333 0.00 0.00 0.00 5.19
1639 1837 4.071961 AGGTTCATTTTTGCCCTCAAAC 57.928 40.909 0.00 0.00 41.48 2.93
1641 1839 3.491792 GGTTCATTTTTGCCCTCAAACGA 60.492 43.478 0.00 0.00 41.48 3.85
1643 1841 2.955660 TCATTTTTGCCCTCAAACGACT 59.044 40.909 0.00 0.00 41.48 4.18
1674 1872 6.767902 GCTGGATTCCACTATTGTAAAGATGA 59.232 38.462 0.00 0.00 0.00 2.92
1675 1873 7.446625 GCTGGATTCCACTATTGTAAAGATGAT 59.553 37.037 0.00 0.00 0.00 2.45
1676 1874 8.681486 TGGATTCCACTATTGTAAAGATGATG 57.319 34.615 0.00 0.00 0.00 3.07
1677 1875 7.720957 TGGATTCCACTATTGTAAAGATGATGG 59.279 37.037 0.00 0.00 0.00 3.51
1678 1876 7.939039 GGATTCCACTATTGTAAAGATGATGGA 59.061 37.037 0.00 0.00 31.95 3.41
1679 1877 9.342308 GATTCCACTATTGTAAAGATGATGGAA 57.658 33.333 4.48 4.48 45.17 3.53
1680 1878 8.506168 TTCCACTATTGTAAAGATGATGGAAC 57.494 34.615 0.00 0.00 38.47 3.62
1681 1879 7.054124 TCCACTATTGTAAAGATGATGGAACC 58.946 38.462 0.00 0.00 30.89 3.62
1682 1880 6.017934 CCACTATTGTAAAGATGATGGAACCG 60.018 42.308 0.00 0.00 0.00 4.44
1790 1997 8.658619 AGATATTTGATGCTCCATTTCTACTCT 58.341 33.333 0.00 0.00 0.00 3.24
1801 2008 7.550906 GCTCCATTTCTACTCTGATAGTTGTTT 59.449 37.037 0.00 0.00 39.80 2.83
1815 2022 6.544197 TGATAGTTGTTTGGTAGCTTGTTCAA 59.456 34.615 0.00 0.00 0.00 2.69
1821 2028 6.446318 TGTTTGGTAGCTTGTTCAATTCATC 58.554 36.000 0.00 0.00 0.00 2.92
1845 2052 5.276678 CGGTCATTCACGCGAAAATAGTTAT 60.277 40.000 15.93 0.00 34.01 1.89
1890 2097 5.242434 TGGCTTACCATATAACTATTGCCG 58.758 41.667 0.00 0.00 42.67 5.69
1906 2114 1.598701 GCCGCTGGATCCTTTTTGCT 61.599 55.000 14.23 0.00 0.00 3.91
1909 2117 2.159379 CCGCTGGATCCTTTTTGCTTAC 60.159 50.000 14.23 0.00 0.00 2.34
1934 2142 4.159244 TCCAACCTCCTTTTCGAAGAAA 57.841 40.909 0.00 0.00 45.90 2.52
1937 2145 5.067283 TCCAACCTCCTTTTCGAAGAAAAAG 59.933 40.000 8.92 0.00 45.90 2.27
1941 2149 6.796426 ACCTCCTTTTCGAAGAAAAAGAAAG 58.204 36.000 8.55 2.61 45.90 2.62
1950 2158 4.615961 CGAAGAAAAAGAAAGCATGCTCTG 59.384 41.667 22.93 0.00 0.00 3.35
1954 2162 2.574006 AAGAAAGCATGCTCTGTGGA 57.426 45.000 22.93 0.00 0.00 4.02
1976 2184 4.967036 AGCAGCTTTAGAAGTCTTCTTGT 58.033 39.130 20.03 0.00 41.14 3.16
1982 2190 7.768120 CAGCTTTAGAAGTCTTCTTGTGGATAT 59.232 37.037 20.03 0.00 41.14 1.63
1983 2191 7.768120 AGCTTTAGAAGTCTTCTTGTGGATATG 59.232 37.037 20.03 3.25 41.14 1.78
1984 2192 7.011857 GCTTTAGAAGTCTTCTTGTGGATATGG 59.988 40.741 20.03 2.03 41.14 2.74
1999 2207 6.101150 TGTGGATATGGGCTTTATGAGTTACT 59.899 38.462 0.00 0.00 0.00 2.24
2001 2209 6.174049 GGATATGGGCTTTATGAGTTACTCC 58.826 44.000 10.10 0.00 0.00 3.85
2002 2210 3.926058 TGGGCTTTATGAGTTACTCCC 57.074 47.619 10.10 3.06 0.00 4.30
2004 2212 3.454812 TGGGCTTTATGAGTTACTCCCTC 59.545 47.826 10.10 0.00 33.77 4.30
2005 2213 3.712218 GGGCTTTATGAGTTACTCCCTCT 59.288 47.826 10.10 0.00 0.00 3.69
2006 2214 4.443598 GGGCTTTATGAGTTACTCCCTCTG 60.444 50.000 10.10 0.00 0.00 3.35
2007 2215 4.162509 GGCTTTATGAGTTACTCCCTCTGT 59.837 45.833 10.10 0.00 0.00 3.41
2008 2216 5.353111 GCTTTATGAGTTACTCCCTCTGTC 58.647 45.833 10.10 0.00 0.00 3.51
2009 2217 5.682730 GCTTTATGAGTTACTCCCTCTGTCC 60.683 48.000 10.10 0.00 0.00 4.02
2010 2218 2.233305 TGAGTTACTCCCTCTGTCCC 57.767 55.000 10.10 0.00 0.00 4.46
2011 2219 1.431633 TGAGTTACTCCCTCTGTCCCA 59.568 52.381 10.10 0.00 0.00 4.37
2012 2220 2.044492 TGAGTTACTCCCTCTGTCCCAT 59.956 50.000 10.10 0.00 0.00 4.00
2013 2221 3.271225 TGAGTTACTCCCTCTGTCCCATA 59.729 47.826 10.10 0.00 0.00 2.74
2014 2222 4.264668 TGAGTTACTCCCTCTGTCCCATAA 60.265 45.833 10.10 0.00 0.00 1.90
2015 2223 4.897051 AGTTACTCCCTCTGTCCCATAAT 58.103 43.478 0.00 0.00 0.00 1.28
2016 2224 6.039415 AGTTACTCCCTCTGTCCCATAATA 57.961 41.667 0.00 0.00 0.00 0.98
2017 2225 6.635021 AGTTACTCCCTCTGTCCCATAATAT 58.365 40.000 0.00 0.00 0.00 1.28
2018 2226 7.776745 AGTTACTCCCTCTGTCCCATAATATA 58.223 38.462 0.00 0.00 0.00 0.86
2019 2227 8.239478 AGTTACTCCCTCTGTCCCATAATATAA 58.761 37.037 0.00 0.00 0.00 0.98
2020 2228 8.532819 GTTACTCCCTCTGTCCCATAATATAAG 58.467 40.741 0.00 0.00 0.00 1.73
2021 2229 6.635021 ACTCCCTCTGTCCCATAATATAAGT 58.365 40.000 0.00 0.00 0.00 2.24
2022 2230 6.498651 ACTCCCTCTGTCCCATAATATAAGTG 59.501 42.308 0.00 0.00 0.00 3.16
2023 2231 6.390504 TCCCTCTGTCCCATAATATAAGTGT 58.609 40.000 0.00 0.00 0.00 3.55
2024 2232 6.497259 TCCCTCTGTCCCATAATATAAGTGTC 59.503 42.308 0.00 0.00 0.00 3.67
2025 2233 6.270000 CCCTCTGTCCCATAATATAAGTGTCA 59.730 42.308 0.00 0.00 0.00 3.58
2026 2234 7.202093 CCCTCTGTCCCATAATATAAGTGTCAA 60.202 40.741 0.00 0.00 0.00 3.18
2027 2235 8.210946 CCTCTGTCCCATAATATAAGTGTCAAA 58.789 37.037 0.00 0.00 0.00 2.69
2028 2236 9.613428 CTCTGTCCCATAATATAAGTGTCAAAA 57.387 33.333 0.00 0.00 0.00 2.44
2029 2237 9.967451 TCTGTCCCATAATATAAGTGTCAAAAA 57.033 29.630 0.00 0.00 0.00 1.94
2031 2239 8.670135 TGTCCCATAATATAAGTGTCAAAAACG 58.330 33.333 0.00 0.00 0.00 3.60
2032 2240 7.642586 GTCCCATAATATAAGTGTCAAAAACGC 59.357 37.037 0.00 0.00 38.74 4.84
2044 2252 7.672738 AGTGTCAAAAACGCTCTTATATTACG 58.327 34.615 0.00 0.00 45.69 3.18
2045 2253 6.898189 GTGTCAAAAACGCTCTTATATTACGG 59.102 38.462 0.00 0.00 35.42 4.02
2046 2254 6.036300 TGTCAAAAACGCTCTTATATTACGGG 59.964 38.462 0.00 0.00 0.00 5.28
2047 2255 6.256321 GTCAAAAACGCTCTTATATTACGGGA 59.744 38.462 0.00 0.00 0.00 5.14
2048 2256 6.987992 TCAAAAACGCTCTTATATTACGGGAT 59.012 34.615 0.00 0.00 0.00 3.85
2049 2257 6.780706 AAAACGCTCTTATATTACGGGATG 57.219 37.500 0.00 0.00 0.00 3.51
2050 2258 4.451629 ACGCTCTTATATTACGGGATGG 57.548 45.455 0.00 0.00 0.00 3.51
2051 2259 4.084287 ACGCTCTTATATTACGGGATGGA 58.916 43.478 0.00 0.00 0.00 3.41
2052 2260 4.158025 ACGCTCTTATATTACGGGATGGAG 59.842 45.833 0.00 0.00 0.00 3.86
2053 2261 4.440250 CGCTCTTATATTACGGGATGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
2054 2262 4.141914 GCTCTTATATTACGGGATGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
2055 2263 5.269991 CTCTTATATTACGGGATGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
2056 2264 5.269991 TCTTATATTACGGGATGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
2057 2265 3.562108 ATATTACGGGATGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
2058 2266 4.687262 ATATTACGGGATGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
2059 2267 2.077687 TTACGGGATGGAGGGAGTAC 57.922 55.000 0.00 0.00 0.00 2.73
2060 2268 0.186873 TACGGGATGGAGGGAGTACC 59.813 60.000 0.00 0.00 40.67 3.34
2163 2371 2.964464 TGATGGATGCAGTTTGTTGGTT 59.036 40.909 0.00 0.00 0.00 3.67
2190 2403 1.340991 TGGGACTGCTAGAAAATGGCC 60.341 52.381 0.00 0.00 33.66 5.36
2199 2412 2.044123 AGAAAATGGCCTCCATCGTC 57.956 50.000 3.32 0.59 44.40 4.20
2260 2473 5.700402 TTCCTTTTAGCCTCTCTATGCTT 57.300 39.130 0.00 0.00 39.00 3.91
2267 2480 2.038659 GCCTCTCTATGCTTCTCCAGT 58.961 52.381 0.00 0.00 0.00 4.00
2286 2499 7.446931 TCTCCAGTTGTGAATACTTATTTGCAA 59.553 33.333 0.00 0.00 0.00 4.08
2429 2657 8.657712 ACCAAGAATCATCATCATCTCATAGAA 58.342 33.333 0.00 0.00 0.00 2.10
2538 2766 7.841915 TGACAATAAGCGATGATAAAGTTGA 57.158 32.000 0.00 0.00 0.00 3.18
2539 2767 8.437360 TGACAATAAGCGATGATAAAGTTGAT 57.563 30.769 0.00 0.00 0.00 2.57
2540 2768 8.337532 TGACAATAAGCGATGATAAAGTTGATG 58.662 33.333 0.00 0.00 0.00 3.07
2544 2772 2.349817 GCGATGATAAAGTTGATGGCCG 60.350 50.000 0.00 0.00 0.00 6.13
2602 2831 3.256631 ACTTGTTGACCTGATGCCATTTC 59.743 43.478 0.00 0.00 0.00 2.17
2613 2842 4.562082 TGATGCCATTTCTTCTTTTGCTG 58.438 39.130 0.00 0.00 0.00 4.41
2642 2872 5.604231 TGTGATGGCTTTCTGACTATAGGAT 59.396 40.000 4.43 0.00 0.00 3.24
2756 2987 7.721286 GGTGATACCTTGATCAGTATCTTTG 57.279 40.000 24.47 3.68 43.42 2.77
2836 3067 3.308402 CCTTTGTATGGTCCATGGACTGT 60.308 47.826 37.26 28.39 44.04 3.55
2961 3222 6.479884 AGCTTCAAACTATTCTCTGGAATGT 58.520 36.000 2.01 0.00 41.66 2.71
2962 3223 6.944862 AGCTTCAAACTATTCTCTGGAATGTT 59.055 34.615 2.01 2.57 41.66 2.71
2963 3224 7.449704 AGCTTCAAACTATTCTCTGGAATGTTT 59.550 33.333 2.01 7.21 41.66 2.83
2964 3225 7.540055 GCTTCAAACTATTCTCTGGAATGTTTG 59.460 37.037 22.34 22.34 45.84 2.93
2965 3226 8.463930 TTCAAACTATTCTCTGGAATGTTTGT 57.536 30.769 24.32 10.92 45.44 2.83
2966 3227 9.567776 TTCAAACTATTCTCTGGAATGTTTGTA 57.432 29.630 24.32 19.36 45.44 2.41
2967 3228 9.567776 TCAAACTATTCTCTGGAATGTTTGTAA 57.432 29.630 24.32 15.36 45.44 2.41
2968 3229 9.612620 CAAACTATTCTCTGGAATGTTTGTAAC 57.387 33.333 21.36 0.00 43.68 2.50
3006 3267 3.981071 ATTCCTCAGAACATTGGACGA 57.019 42.857 0.00 0.00 33.97 4.20
3066 3327 3.387374 AGAAGGTCTCATACATGGCAGAG 59.613 47.826 0.00 0.80 0.00 3.35
3127 3388 4.098807 AGGTGTGTTAATTTGCCGTCTTTT 59.901 37.500 0.00 0.00 0.00 2.27
3179 3440 4.516698 AGTGAATATTTCTAATGCTGGGCG 59.483 41.667 0.00 0.00 0.00 6.13
3213 3474 6.747414 TGATAATATCTGGTACAACAGGCT 57.253 37.500 1.66 0.00 38.70 4.58
3234 3495 3.297134 AAGTGCTTGGAAACTGGAGAA 57.703 42.857 0.00 0.00 0.00 2.87
3286 3547 9.243105 AGGATAAGAGATATAAGAACAGAGAGC 57.757 37.037 0.00 0.00 0.00 4.09
3469 3730 6.309737 GCGTGTACCCATACTATATGTTAAGC 59.690 42.308 0.00 0.00 32.00 3.09
3543 3804 9.098355 TCTTTCAAAGAGTTATATTCGGTGATG 57.902 33.333 0.00 0.00 32.71 3.07
3547 3808 5.791336 AGAGTTATATTCGGTGATGCTCA 57.209 39.130 0.00 0.00 0.00 4.26
3548 3809 6.161855 AGAGTTATATTCGGTGATGCTCAA 57.838 37.500 0.00 0.00 0.00 3.02
3549 3810 6.219473 AGAGTTATATTCGGTGATGCTCAAG 58.781 40.000 0.00 0.00 0.00 3.02
3666 3927 7.593273 CGCAAAATCTGTTGGTAAGTTCATTAA 59.407 33.333 0.00 0.00 0.00 1.40
3699 3960 4.872691 AGACATATCTTCTTGCTTGAACCG 59.127 41.667 0.00 0.00 0.00 4.44
3734 3995 1.377856 GCTTGCAGGTTCCCTCCTC 60.378 63.158 0.00 0.00 35.37 3.71
3917 4178 8.594687 CACTTATTTTCTTGGTCTTGTGTTTTG 58.405 33.333 0.00 0.00 0.00 2.44
3943 4204 4.180817 TGTATTTGACAGTACATGGCTCG 58.819 43.478 0.00 0.00 38.04 5.03
3948 4209 3.521560 TGACAGTACATGGCTCGATTTC 58.478 45.455 0.00 0.00 38.04 2.17
3952 4213 1.599542 GTACATGGCTCGATTTCAGGC 59.400 52.381 0.00 0.00 36.96 4.85
4088 4349 1.939255 GTAGCTGAGCTTCTGATTGGC 59.061 52.381 14.14 0.00 40.44 4.52
4099 4360 4.802248 GCTTCTGATTGGCCAGGTATAGAG 60.802 50.000 5.11 1.55 34.99 2.43
4189 4450 7.587037 AAGATCACTTGATTTTTGAGGACAA 57.413 32.000 0.00 0.00 34.37 3.18
4190 4451 7.771927 AGATCACTTGATTTTTGAGGACAAT 57.228 32.000 0.00 0.00 33.78 2.71
4289 4555 5.992217 GTGGAGTTTCTCAACATTAGAGTGT 59.008 40.000 0.03 0.00 34.74 3.55
4297 4563 5.047092 TCTCAACATTAGAGTGTGATCAGCA 60.047 40.000 0.00 0.00 34.73 4.41
4298 4564 5.550290 TCAACATTAGAGTGTGATCAGCAA 58.450 37.500 0.00 0.00 31.49 3.91
4311 4577 2.698855 TCAGCAACATCTAGAAGGCC 57.301 50.000 0.00 0.00 0.00 5.19
4314 4580 1.137872 AGCAACATCTAGAAGGCCTCG 59.862 52.381 5.23 0.00 0.00 4.63
4326 4592 6.892456 TCTAGAAGGCCTCGTATCATATCATT 59.108 38.462 5.23 0.00 0.00 2.57
4475 4742 8.665685 GTTGATAATTACTTTCCTGTCGACAAT 58.334 33.333 20.49 5.16 0.00 2.71
4658 4933 7.044181 CAGTAAGCTGAAGTCATCATTCCTTA 58.956 38.462 0.00 0.00 45.28 2.69
4800 5083 7.121463 ACCTCTCTATATGTATTCAGTTAGCCG 59.879 40.741 0.00 0.00 0.00 5.52
4806 5089 3.362706 TGTATTCAGTTAGCCGAGACCT 58.637 45.455 0.00 0.00 0.00 3.85
4819 5102 2.366533 CGAGACCTCTGTAACCTGCTA 58.633 52.381 0.00 0.00 0.00 3.49
4820 5103 2.753452 CGAGACCTCTGTAACCTGCTAA 59.247 50.000 0.00 0.00 0.00 3.09
4831 5114 6.592607 TCTGTAACCTGCTAACCTAATTTTCG 59.407 38.462 0.00 0.00 0.00 3.46
4834 5117 4.259356 ACCTGCTAACCTAATTTTCGTCC 58.741 43.478 0.00 0.00 0.00 4.79
4838 5121 3.484721 GCTAACCTAATTTTCGTCCGCAC 60.485 47.826 0.00 0.00 0.00 5.34
4948 5231 6.948309 AGCTGTAAGAATGGTTTTATCCTTGT 59.052 34.615 0.00 0.00 34.07 3.16
4967 5250 5.392380 CCTTGTGCTATTTGAACCAAGCTAG 60.392 44.000 0.00 0.00 35.95 3.42
4976 5259 5.452078 TTGAACCAAGCTAGGAACAAATG 57.548 39.130 0.00 0.00 0.00 2.32
4995 5278 5.401531 AATGAGCACAGATTCATTGCTTT 57.598 34.783 11.92 3.19 46.62 3.51
5000 5283 6.376299 TGAGCACAGATTCATTGCTTTCTAAT 59.624 34.615 11.92 0.00 46.62 1.73
5006 5289 8.404000 ACAGATTCATTGCTTTCTAATGCTAAG 58.596 33.333 2.77 0.00 35.90 2.18
5013 5379 8.887717 CATTGCTTTCTAATGCTAAGTTCTACT 58.112 33.333 2.77 0.00 0.00 2.57
5132 5933 7.282585 TGAAGAAGAGACATCCTTGAAAAAGA 58.717 34.615 0.00 0.00 0.00 2.52
5138 5939 4.752101 AGACATCCTTGAAAAAGACGAGTG 59.248 41.667 0.00 0.00 0.00 3.51
5150 5951 5.899120 AAAGACGAGTGCTATTCTGACTA 57.101 39.130 0.00 0.00 0.00 2.59
5311 6123 5.126061 AGACTCTGCAATTGTTTTGAACTGT 59.874 36.000 7.40 0.00 0.00 3.55
5312 6124 6.318648 AGACTCTGCAATTGTTTTGAACTGTA 59.681 34.615 7.40 0.00 0.00 2.74
5313 6125 6.862209 ACTCTGCAATTGTTTTGAACTGTAA 58.138 32.000 7.40 0.00 0.00 2.41
5314 6126 7.319646 ACTCTGCAATTGTTTTGAACTGTAAA 58.680 30.769 7.40 0.00 0.00 2.01
5315 6127 7.816995 ACTCTGCAATTGTTTTGAACTGTAAAA 59.183 29.630 7.40 0.00 0.00 1.52
5316 6128 8.539770 TCTGCAATTGTTTTGAACTGTAAAAA 57.460 26.923 7.40 0.00 0.00 1.94
5317 6129 8.439286 TCTGCAATTGTTTTGAACTGTAAAAAC 58.561 29.630 17.94 17.94 43.43 2.43
5356 6168 4.553938 GCTGTTGAGCTTTTTGTTACGCTA 60.554 41.667 0.00 0.00 42.52 4.26
5378 6201 2.852449 ACCTGATACAACCCATGGACAT 59.148 45.455 15.22 0.00 0.00 3.06
5379 6202 3.216800 CCTGATACAACCCATGGACATG 58.783 50.000 15.22 11.42 38.51 3.21
5380 6203 3.371917 CCTGATACAACCCATGGACATGT 60.372 47.826 15.22 16.64 37.11 3.21
5416 6239 2.045536 GGCCTCCCTGTTGAGCTG 60.046 66.667 0.00 0.00 0.00 4.24
5434 6257 1.227973 GCTCCACCGGATCATTCCC 60.228 63.158 9.46 0.00 39.01 3.97
5456 6279 5.419542 CCGAACATATGAGGAAGTGAAGAA 58.580 41.667 10.38 0.00 0.00 2.52
5457 6280 5.521735 CCGAACATATGAGGAAGTGAAGAAG 59.478 44.000 10.38 0.00 0.00 2.85
5465 6290 1.578206 GAAGTGAAGAAGTGGCGGCC 61.578 60.000 13.32 13.32 0.00 6.13
5485 6314 3.793465 GCCGGAGAAGCATTATTTCTTGC 60.793 47.826 5.05 0.00 35.14 4.01
5493 6322 1.750778 CATTATTTCTTGCCGCCACCT 59.249 47.619 0.00 0.00 0.00 4.00
5495 6324 2.791347 TATTTCTTGCCGCCACCTTA 57.209 45.000 0.00 0.00 0.00 2.69
5496 6325 1.917872 ATTTCTTGCCGCCACCTTAA 58.082 45.000 0.00 0.00 0.00 1.85
5500 6329 4.733542 TGCCGCCACCTTAAGGGC 62.734 66.667 25.31 17.97 46.80 5.19
5509 6338 2.793317 ACCTTAAGGGCGGAGACGGA 62.793 60.000 25.31 0.00 46.99 4.69
5528 6357 0.107897 AACACCGCGAGCATATCCAA 60.108 50.000 8.23 0.00 0.00 3.53
5529 6358 0.107897 ACACCGCGAGCATATCCAAA 60.108 50.000 8.23 0.00 0.00 3.28
5531 6360 1.069703 CACCGCGAGCATATCCAAATG 60.070 52.381 8.23 0.00 0.00 2.32
5534 6363 2.138320 CGCGAGCATATCCAAATGTCT 58.862 47.619 0.00 0.00 0.00 3.41
5535 6364 2.096565 CGCGAGCATATCCAAATGTCTG 60.097 50.000 0.00 0.00 0.00 3.51
5536 6365 2.225019 GCGAGCATATCCAAATGTCTGG 59.775 50.000 0.00 0.00 37.87 3.86
5537 6366 3.470709 CGAGCATATCCAAATGTCTGGT 58.529 45.455 0.00 0.00 37.74 4.00
5538 6367 3.249320 CGAGCATATCCAAATGTCTGGTG 59.751 47.826 0.00 0.00 37.74 4.17
5691 6526 8.771920 TGTCGTTTGATGAAAGAATAGTATGT 57.228 30.769 0.00 0.00 0.00 2.29
5809 6650 3.654321 TCTGAGGCATTCATGGTGGATAT 59.346 43.478 0.00 0.00 34.68 1.63
5810 6651 4.105217 TCTGAGGCATTCATGGTGGATATT 59.895 41.667 0.00 0.00 34.68 1.28
5811 6652 4.401022 TGAGGCATTCATGGTGGATATTC 58.599 43.478 0.00 0.00 0.00 1.75
5814 6655 5.075493 AGGCATTCATGGTGGATATTCTTC 58.925 41.667 0.00 0.00 0.00 2.87
5816 6657 4.516698 GCATTCATGGTGGATATTCTTCGT 59.483 41.667 0.00 0.00 0.00 3.85
5817 6658 5.700832 GCATTCATGGTGGATATTCTTCGTA 59.299 40.000 0.00 0.00 0.00 3.43
5822 6663 7.679783 TCATGGTGGATATTCTTCGTATTGAT 58.320 34.615 0.00 0.00 0.00 2.57
5823 6664 8.811994 TCATGGTGGATATTCTTCGTATTGATA 58.188 33.333 0.00 0.00 0.00 2.15
5824 6665 9.605275 CATGGTGGATATTCTTCGTATTGATAT 57.395 33.333 0.00 0.00 0.00 1.63
5825 6666 9.605275 ATGGTGGATATTCTTCGTATTGATATG 57.395 33.333 0.00 0.00 0.00 1.78
5830 6680 9.838339 GGATATTCTTCGTATTGATATGGGATT 57.162 33.333 0.00 0.00 0.00 3.01
5833 6683 5.168569 TCTTCGTATTGATATGGGATTCGC 58.831 41.667 0.00 0.00 0.00 4.70
5899 6752 3.375911 GCAAGTGCAATCGAAGTACTC 57.624 47.619 11.27 0.00 41.59 2.59
5968 6841 3.574614 CATTTAAAACAAGTGCCTCCGG 58.425 45.455 0.00 0.00 0.00 5.14
5979 6856 2.303022 AGTGCCTCCGGTATGAATATGG 59.697 50.000 0.00 0.00 0.00 2.74
6061 6943 0.035056 GGGGAGATGGGTGACAAGTG 60.035 60.000 0.00 0.00 0.00 3.16
6062 6944 0.693049 GGGAGATGGGTGACAAGTGT 59.307 55.000 0.00 0.00 0.00 3.55
6063 6945 1.906574 GGGAGATGGGTGACAAGTGTA 59.093 52.381 0.00 0.00 0.00 2.90
6064 6946 2.304761 GGGAGATGGGTGACAAGTGTAA 59.695 50.000 0.00 0.00 0.00 2.41
6065 6947 3.600388 GGAGATGGGTGACAAGTGTAAG 58.400 50.000 0.00 0.00 0.00 2.34
6066 6948 3.008049 GGAGATGGGTGACAAGTGTAAGT 59.992 47.826 0.00 0.00 0.00 2.24
6176 7059 0.033601 TTGGTGGTGACAAGTTGGCT 60.034 50.000 10.75 0.00 46.06 4.75
6177 7060 0.751277 TGGTGGTGACAAGTTGGCTG 60.751 55.000 10.75 0.00 46.06 4.85
6178 7061 0.465460 GGTGGTGACAAGTTGGCTGA 60.465 55.000 10.75 0.00 46.06 4.26
6179 7062 0.663153 GTGGTGACAAGTTGGCTGAC 59.337 55.000 10.75 0.00 46.06 3.51
6206 7089 1.802508 GCAGTGGCGATATTTTTGGGC 60.803 52.381 0.00 0.00 0.00 5.36
6208 7091 2.024414 AGTGGCGATATTTTTGGGCTC 58.976 47.619 0.00 0.00 0.00 4.70
6233 7116 3.864003 GCGTGTTAGGAGAGGACAAATAC 59.136 47.826 0.00 0.00 0.00 1.89
6354 7238 1.774639 TCTTCTACCGACAACGTTGC 58.225 50.000 27.61 18.45 37.88 4.17
6361 7245 1.484227 CCGACAACGTTGCGAAGTCA 61.484 55.000 31.97 0.00 35.40 3.41
6368 7252 0.508641 CGTTGCGAAGTCACTTGGAG 59.491 55.000 3.31 0.00 0.00 3.86
6404 7288 0.031314 AGCACGCATCCATCGAGTAG 59.969 55.000 0.00 0.00 0.00 2.57
6405 7289 0.941463 GCACGCATCCATCGAGTAGG 60.941 60.000 0.00 0.00 0.00 3.18
6406 7290 0.668535 CACGCATCCATCGAGTAGGA 59.331 55.000 6.51 6.51 38.50 2.94
6407 7291 0.955178 ACGCATCCATCGAGTAGGAG 59.045 55.000 9.50 4.22 37.34 3.69
6408 7292 0.955178 CGCATCCATCGAGTAGGAGT 59.045 55.000 9.50 0.00 37.34 3.85
6409 7293 2.152016 CGCATCCATCGAGTAGGAGTA 58.848 52.381 9.50 0.00 37.34 2.59
6426 7585 3.462021 GAGTATGATGCAAGGAGTCACC 58.538 50.000 0.00 0.00 39.35 4.02
6447 7606 3.433031 CCCAGACACTCGGCCATTAATAA 60.433 47.826 2.24 0.00 0.00 1.40
6448 7607 4.389374 CCAGACACTCGGCCATTAATAAT 58.611 43.478 2.24 0.00 0.00 1.28
6449 7608 4.214119 CCAGACACTCGGCCATTAATAATG 59.786 45.833 2.24 6.03 38.63 1.90
6514 7949 7.436080 GGTGACACCGACTCGATATAAATAAAA 59.564 37.037 9.33 0.00 0.00 1.52
6515 7950 8.810427 GTGACACCGACTCGATATAAATAAAAA 58.190 33.333 0.00 0.00 0.00 1.94
6516 7951 8.810427 TGACACCGACTCGATATAAATAAAAAC 58.190 33.333 0.00 0.00 0.00 2.43
6597 8040 2.763215 GTGGGTGATCTTGGGCCA 59.237 61.111 0.00 0.00 0.00 5.36
6719 8167 7.680827 GCCGTCCATATCAAAACATGTGATTTA 60.681 37.037 0.00 0.00 37.01 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 7.997803 CCATGGAGGAAGATTTCTTATTCTTCT 59.002 37.037 5.56 0.41 44.66 2.85
61 62 5.346281 CCTGTCTGTTCTTTTACTTCGCTAG 59.654 44.000 0.00 0.00 0.00 3.42
116 117 7.350110 CGCAAGGAAAACAATTCATTTACAT 57.650 32.000 0.00 0.00 0.00 2.29
185 186 2.799207 CGCATAATTGTTCATGTGGGGC 60.799 50.000 0.00 0.00 0.00 5.80
189 190 4.094739 TGAGGTCGCATAATTGTTCATGTG 59.905 41.667 0.00 0.00 34.65 3.21
191 192 4.094739 TGTGAGGTCGCATAATTGTTCATG 59.905 41.667 0.00 0.00 0.00 3.07
192 193 4.260985 TGTGAGGTCGCATAATTGTTCAT 58.739 39.130 0.00 0.00 0.00 2.57
199 200 5.003804 ACTTTTCTTGTGAGGTCGCATAAT 58.996 37.500 0.00 0.00 36.14 1.28
306 307 1.802636 CCGATGTGCGCCAAGATTT 59.197 52.632 4.18 0.00 39.11 2.17
327 329 1.683365 GGGGCATGCAGATTGTGGT 60.683 57.895 21.36 0.00 0.00 4.16
346 348 2.036958 TATGTGGCAGGTATGTGCAC 57.963 50.000 10.75 10.75 45.93 4.57
354 356 2.269940 GGGAGGATATATGTGGCAGGT 58.730 52.381 0.00 0.00 0.00 4.00
367 369 2.605825 TATTGGTTGGAGGGGAGGAT 57.394 50.000 0.00 0.00 0.00 3.24
368 370 2.135189 CATATTGGTTGGAGGGGAGGA 58.865 52.381 0.00 0.00 0.00 3.71
369 371 2.135189 TCATATTGGTTGGAGGGGAGG 58.865 52.381 0.00 0.00 0.00 4.30
371 373 1.850345 GGTCATATTGGTTGGAGGGGA 59.150 52.381 0.00 0.00 0.00 4.81
374 376 3.696051 CACAAGGTCATATTGGTTGGAGG 59.304 47.826 0.00 0.00 31.76 4.30
376 378 4.380843 ACACAAGGTCATATTGGTTGGA 57.619 40.909 0.00 0.00 31.76 3.53
377 379 4.522405 TGAACACAAGGTCATATTGGTTGG 59.478 41.667 0.00 0.00 31.76 3.77
378 380 5.009510 TGTGAACACAAGGTCATATTGGTTG 59.990 40.000 5.11 0.00 38.56 3.77
379 381 5.136828 TGTGAACACAAGGTCATATTGGTT 58.863 37.500 5.11 0.00 38.56 3.67
380 382 4.724399 TGTGAACACAAGGTCATATTGGT 58.276 39.130 5.11 0.00 38.56 3.67
381 383 4.379813 GCTGTGAACACAAGGTCATATTGG 60.380 45.833 8.93 0.00 41.33 3.16
408 411 2.223845 TGTGTGTGCAGATGTTTGATCG 59.776 45.455 0.00 0.00 0.00 3.69
431 434 4.134933 TGGGGGCCAAAGTAGTATTTTT 57.865 40.909 4.39 0.00 0.00 1.94
455 458 9.965902 AATGAGATTGATAACCTCACTAGTTTT 57.034 29.630 0.00 0.00 39.43 2.43
531 537 4.723248 CTTTTGCCTACAACCGAATCTTC 58.277 43.478 0.00 0.00 34.87 2.87
538 544 2.500509 TTTGCTTTTGCCTACAACCG 57.499 45.000 0.00 0.00 46.87 4.44
539 545 6.852858 TTTATTTTGCTTTTGCCTACAACC 57.147 33.333 0.00 0.00 46.87 3.77
572 578 6.421202 GCGACTTCCTATAATCTTTCAATCGT 59.579 38.462 0.00 0.00 0.00 3.73
573 579 6.420903 TGCGACTTCCTATAATCTTTCAATCG 59.579 38.462 0.00 0.00 0.00 3.34
594 600 8.778141 TTACGTTTTTATGTTTATGTTTGCGA 57.222 26.923 0.00 0.00 0.00 5.10
640 646 7.104290 GGAGTAGCAGAAACCAAATAGTACTT 58.896 38.462 0.00 0.00 0.00 2.24
710 719 9.687195 AATGCTTCCATTTAATGCCAGATGCAA 62.687 37.037 18.77 9.25 45.68 4.08
711 720 8.315437 AATGCTTCCATTTAATGCCAGATGCA 62.315 38.462 17.88 17.88 46.22 3.96
747 756 4.771577 TGCTGTAAATTTCATGACATGGGT 59.228 37.500 15.37 0.00 0.00 4.51
753 762 6.855836 TGGATTCTGCTGTAAATTTCATGAC 58.144 36.000 0.00 0.00 0.00 3.06
757 766 5.415701 GTCCTGGATTCTGCTGTAAATTTCA 59.584 40.000 0.00 0.00 0.00 2.69
819 828 0.673437 CTCCTCTCTCTTCCGGATGC 59.327 60.000 4.15 0.00 0.00 3.91
828 837 2.022035 TCTCCCTCTCTCTCCTCTCTCT 60.022 54.545 0.00 0.00 0.00 3.10
873 882 2.099263 TCGCTACACCACTAGATTGCTC 59.901 50.000 0.00 0.00 0.00 4.26
1058 1248 4.467084 GAGGCGGCGATTGGTGGA 62.467 66.667 12.98 0.00 0.00 4.02
1282 1477 2.480073 GGTTTCCATGTCATTGATGGCG 60.480 50.000 1.97 0.00 40.35 5.69
1286 1481 2.754552 CCACGGTTTCCATGTCATTGAT 59.245 45.455 0.00 0.00 0.00 2.57
1308 1503 2.635305 GCGCAAAAACGAACCAGCG 61.635 57.895 0.30 10.77 46.99 5.18
1458 1653 1.605710 CCTAGCTGAATGCCAAATCCG 59.394 52.381 0.00 0.00 44.23 4.18
1471 1666 1.398390 CCTTTAAAGCGCACCTAGCTG 59.602 52.381 11.47 0.00 45.31 4.24
1478 1673 1.442017 CGCCACCTTTAAAGCGCAC 60.442 57.895 11.47 0.00 42.31 5.34
1494 1689 0.854705 CAAAAGCAGAAGCAAACCGC 59.145 50.000 0.00 0.00 45.49 5.68
1496 1691 3.932089 TCAAACAAAAGCAGAAGCAAACC 59.068 39.130 0.00 0.00 45.49 3.27
1501 1696 2.531508 CACGTCAAACAAAAGCAGAAGC 59.468 45.455 0.00 0.00 42.56 3.86
1502 1697 3.543494 CACACGTCAAACAAAAGCAGAAG 59.457 43.478 0.00 0.00 0.00 2.85
1513 1708 2.376915 TTTCATCGCACACGTCAAAC 57.623 45.000 0.00 0.00 41.18 2.93
1524 1719 1.327460 TGCTAGCATCGTTTTCATCGC 59.673 47.619 14.93 0.00 0.00 4.58
1582 1777 6.319152 TGAATCGGGCTTATTCGGAAATAAAA 59.681 34.615 0.00 0.00 37.00 1.52
1600 1795 7.744087 TGAACCTATAAAATGGATGAATCGG 57.256 36.000 0.00 0.00 0.00 4.18
1634 1832 1.165907 CCAGCCTTGCAGTCGTTTGA 61.166 55.000 0.00 0.00 0.00 2.69
1639 1837 1.372087 GGAATCCAGCCTTGCAGTCG 61.372 60.000 0.00 0.00 0.00 4.18
1641 1839 0.610232 GTGGAATCCAGCCTTGCAGT 60.610 55.000 0.27 0.00 32.34 4.40
1643 1841 0.991146 TAGTGGAATCCAGCCTTGCA 59.009 50.000 0.27 0.00 32.34 4.08
1674 1872 2.045926 GGCACTCTGCGGTTCCAT 60.046 61.111 0.00 0.00 46.21 3.41
1675 1873 3.535629 CTGGCACTCTGCGGTTCCA 62.536 63.158 0.00 0.00 46.21 3.53
1676 1874 2.743928 CTGGCACTCTGCGGTTCC 60.744 66.667 0.00 0.00 46.21 3.62
1677 1875 3.426568 GCTGGCACTCTGCGGTTC 61.427 66.667 0.00 0.00 46.21 3.62
1678 1876 3.557903 ATGCTGGCACTCTGCGGTT 62.558 57.895 0.00 0.00 46.21 4.44
1679 1877 3.557903 AATGCTGGCACTCTGCGGT 62.558 57.895 0.00 0.00 46.21 5.68
1680 1878 2.749044 AATGCTGGCACTCTGCGG 60.749 61.111 0.00 0.00 46.21 5.69
1681 1879 1.374343 ATGAATGCTGGCACTCTGCG 61.374 55.000 5.66 0.00 46.21 5.18
1682 1880 1.671979 TATGAATGCTGGCACTCTGC 58.328 50.000 5.66 0.00 44.08 4.26
1723 1921 1.439644 GCCTGAACTCCTAGCTCGG 59.560 63.158 0.00 0.00 0.00 4.63
1790 1997 6.058833 TGAACAAGCTACCAAACAACTATCA 58.941 36.000 0.00 0.00 0.00 2.15
1801 2008 3.689161 CCGATGAATTGAACAAGCTACCA 59.311 43.478 0.00 0.00 0.00 3.25
1815 2022 0.930310 CGCGTGAATGACCGATGAAT 59.070 50.000 0.00 0.00 0.00 2.57
1821 2028 2.347452 ACTATTTTCGCGTGAATGACCG 59.653 45.455 12.94 3.46 33.20 4.79
1845 2052 2.168458 TCCCGGTCAATCCATGTAGA 57.832 50.000 0.00 0.00 35.57 2.59
1890 2097 2.159379 CCGTAAGCAAAAAGGATCCAGC 60.159 50.000 15.82 9.59 0.00 4.85
1921 2129 6.562825 GCATGCTTTCTTTTTCTTCGAAAAGG 60.563 38.462 11.37 5.22 43.49 3.11
1928 2136 5.401674 CACAGAGCATGCTTTCTTTTTCTTC 59.598 40.000 23.61 4.25 0.00 2.87
1934 2142 2.818432 CTCCACAGAGCATGCTTTCTTT 59.182 45.455 23.61 5.68 32.13 2.52
1950 2158 3.326836 AGACTTCTAAAGCTGCTCCAC 57.673 47.619 1.00 0.00 0.00 4.02
1954 2162 4.754114 CACAAGAAGACTTCTAAAGCTGCT 59.246 41.667 18.00 0.00 39.61 4.24
1976 2184 6.239887 GGAGTAACTCATAAAGCCCATATCCA 60.240 42.308 0.00 0.00 31.08 3.41
1982 2190 3.454812 GAGGGAGTAACTCATAAAGCCCA 59.545 47.826 0.00 0.00 36.79 5.36
1983 2191 3.712218 AGAGGGAGTAACTCATAAAGCCC 59.288 47.826 0.00 0.00 37.43 5.19
1984 2192 4.162509 ACAGAGGGAGTAACTCATAAAGCC 59.837 45.833 0.00 0.00 37.43 4.35
2006 2214 7.642586 GCGTTTTTGACACTTATATTATGGGAC 59.357 37.037 0.00 0.00 0.00 4.46
2007 2215 7.554835 AGCGTTTTTGACACTTATATTATGGGA 59.445 33.333 0.00 0.00 0.00 4.37
2008 2216 7.703328 AGCGTTTTTGACACTTATATTATGGG 58.297 34.615 0.00 0.00 0.00 4.00
2009 2217 8.612619 AGAGCGTTTTTGACACTTATATTATGG 58.387 33.333 0.00 0.00 0.00 2.74
2010 2218 9.988350 AAGAGCGTTTTTGACACTTATATTATG 57.012 29.630 0.00 0.00 0.00 1.90
2018 2226 8.166706 CGTAATATAAGAGCGTTTTTGACACTT 58.833 33.333 0.00 0.00 0.00 3.16
2019 2227 7.201496 CCGTAATATAAGAGCGTTTTTGACACT 60.201 37.037 0.00 0.00 0.00 3.55
2020 2228 6.898189 CCGTAATATAAGAGCGTTTTTGACAC 59.102 38.462 0.00 0.00 0.00 3.67
2021 2229 6.036300 CCCGTAATATAAGAGCGTTTTTGACA 59.964 38.462 0.00 0.00 0.00 3.58
2022 2230 6.256321 TCCCGTAATATAAGAGCGTTTTTGAC 59.744 38.462 0.00 0.00 0.00 3.18
2023 2231 6.339730 TCCCGTAATATAAGAGCGTTTTTGA 58.660 36.000 0.00 0.00 0.00 2.69
2024 2232 6.592798 TCCCGTAATATAAGAGCGTTTTTG 57.407 37.500 0.00 0.00 0.00 2.44
2025 2233 6.204108 CCATCCCGTAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
2026 2234 5.699458 CCATCCCGTAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
2027 2235 5.011329 TCCATCCCGTAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
2028 2236 4.525487 TCCATCCCGTAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
2029 2237 4.084287 TCCATCCCGTAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
2030 2238 4.440250 CCTCCATCCCGTAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
2031 2239 4.141914 CCCTCCATCCCGTAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
2032 2240 5.269991 TCCCTCCATCCCGTAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
2033 2241 5.222484 ACTCCCTCCATCCCGTAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
2034 2242 5.024118 ACTCCCTCCATCCCGTAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
2035 2243 5.019657 ACTCCCTCCATCCCGTAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
2036 2244 4.687262 ACTCCCTCCATCCCGTAATATA 57.313 45.455 0.00 0.00 0.00 0.86
2037 2245 3.562108 ACTCCCTCCATCCCGTAATAT 57.438 47.619 0.00 0.00 0.00 1.28
2038 2246 3.501019 GGTACTCCCTCCATCCCGTAATA 60.501 52.174 0.00 0.00 0.00 0.98
2039 2247 2.606378 GTACTCCCTCCATCCCGTAAT 58.394 52.381 0.00 0.00 0.00 1.89
2040 2248 1.412074 GGTACTCCCTCCATCCCGTAA 60.412 57.143 0.00 0.00 0.00 3.18
2041 2249 0.186873 GGTACTCCCTCCATCCCGTA 59.813 60.000 0.00 0.00 0.00 4.02
2042 2250 1.075450 GGTACTCCCTCCATCCCGT 60.075 63.158 0.00 0.00 0.00 5.28
2043 2251 3.872431 GGTACTCCCTCCATCCCG 58.128 66.667 0.00 0.00 0.00 5.14
2053 2261 6.584185 AATGTTTGTAATGTTGGGTACTCC 57.416 37.500 0.00 0.00 0.00 3.85
2054 2262 9.968870 TTTTAATGTTTGTAATGTTGGGTACTC 57.031 29.630 0.00 0.00 0.00 2.59
2058 2266 9.061435 CCATTTTTAATGTTTGTAATGTTGGGT 57.939 29.630 0.00 0.00 0.00 4.51
2059 2267 9.277783 TCCATTTTTAATGTTTGTAATGTTGGG 57.722 29.630 0.00 0.00 0.00 4.12
2113 2321 7.537596 TTTCCACCAATCAAGAATTACACAT 57.462 32.000 0.00 0.00 0.00 3.21
2117 2325 8.764287 CAAACTTTTCCACCAATCAAGAATTAC 58.236 33.333 0.00 0.00 0.00 1.89
2131 2339 4.240096 CTGCATCCATCAAACTTTTCCAC 58.760 43.478 0.00 0.00 0.00 4.02
2163 2371 4.568072 TTTCTAGCAGTCCCAAGCAATA 57.432 40.909 0.00 0.00 0.00 1.90
2190 2403 3.567576 ATAGATCTTGCGACGATGGAG 57.432 47.619 0.00 0.00 0.00 3.86
2217 2430 7.725251 AGGAAACTTCAATTTAGCAATCACAA 58.275 30.769 0.00 0.00 37.44 3.33
2260 2473 6.939730 TGCAAATAAGTATTCACAACTGGAGA 59.060 34.615 0.00 0.00 0.00 3.71
2286 2499 6.015772 GTCACCACCCTAACAACAACAATATT 60.016 38.462 0.00 0.00 0.00 1.28
2538 2766 9.528489 AAAATACCTTATCATTATTACGGCCAT 57.472 29.630 2.24 0.00 0.00 4.40
2539 2767 8.788806 CAAAATACCTTATCATTATTACGGCCA 58.211 33.333 2.24 0.00 0.00 5.36
2540 2768 9.005777 TCAAAATACCTTATCATTATTACGGCC 57.994 33.333 0.00 0.00 0.00 6.13
2602 2831 5.346822 GCCATCACATAAACAGCAAAAGAAG 59.653 40.000 0.00 0.00 0.00 2.85
2613 2842 5.886960 AGTCAGAAAGCCATCACATAAAC 57.113 39.130 0.00 0.00 0.00 2.01
2642 2872 0.250553 CAACGGTAACCCCTTCAGCA 60.251 55.000 0.00 0.00 0.00 4.41
2756 2987 5.576384 GCAGTAGAATATGCATGAGAGTAGC 59.424 44.000 10.16 1.07 42.11 3.58
2859 3090 8.902806 TCATAGTGCAAAATTCTACCAATAAGG 58.097 33.333 0.00 0.00 45.67 2.69
2964 3225 9.983804 GGAATAAATGCAGTAGTACAAAGTTAC 57.016 33.333 2.52 0.00 0.00 2.50
2965 3226 9.953565 AGGAATAAATGCAGTAGTACAAAGTTA 57.046 29.630 2.52 0.00 0.00 2.24
2966 3227 8.863872 AGGAATAAATGCAGTAGTACAAAGTT 57.136 30.769 2.52 0.00 0.00 2.66
2967 3228 8.100791 TGAGGAATAAATGCAGTAGTACAAAGT 58.899 33.333 2.52 0.00 0.00 2.66
2968 3229 8.492673 TGAGGAATAAATGCAGTAGTACAAAG 57.507 34.615 2.52 0.00 0.00 2.77
3127 3388 5.950544 AACTGTAGTGATATACAAGGGCA 57.049 39.130 0.00 0.00 35.32 5.36
3213 3474 4.431416 TTCTCCAGTTTCCAAGCACTTA 57.569 40.909 0.00 0.00 0.00 2.24
3309 3570 6.678900 GCTTTAGCTGAACTACATTTGGATGG 60.679 42.308 0.00 0.00 36.46 3.51
3469 3730 6.539826 TCTTCACAAACCTGATATGCATACAG 59.460 38.462 20.47 20.47 0.00 2.74
3543 3804 4.562789 GGAACAACAAACAACTTCTTGAGC 59.437 41.667 0.00 0.00 0.00 4.26
3699 3960 3.113322 CAAGCATGCAATGATACTGCAC 58.887 45.455 21.98 0.00 45.83 4.57
3734 3995 1.179152 TTGCAGGCAGTCATCATTGG 58.821 50.000 0.00 0.00 0.00 3.16
3784 4045 7.112122 TCCATTGCAGTTAGTTGATCATTACT 58.888 34.615 5.42 5.42 0.00 2.24
3798 4059 4.346730 TGGAAGATCAATCCATTGCAGTT 58.653 39.130 14.40 0.00 41.98 3.16
3884 4145 7.277174 AGACCAAGAAAATAAGTGACAAAGG 57.723 36.000 0.00 0.00 0.00 3.11
3885 4146 8.190784 ACAAGACCAAGAAAATAAGTGACAAAG 58.809 33.333 0.00 0.00 0.00 2.77
3943 4204 0.182299 CTCTCCAGGGGCCTGAAATC 59.818 60.000 0.84 0.00 46.30 2.17
3952 4213 0.394899 GATGTTTGGCTCTCCAGGGG 60.395 60.000 0.00 0.00 44.53 4.79
4088 4349 7.094377 GCTTCTAGAATGAGACTCTATACCTGG 60.094 44.444 5.44 0.00 0.00 4.45
4099 4360 7.096551 AGAAAACTGAGCTTCTAGAATGAGAC 58.903 38.462 5.44 0.00 30.05 3.36
4214 4477 8.882415 TTTCAGCTATAAAAGGAGTAATACGG 57.118 34.615 0.00 0.00 0.00 4.02
4245 4508 7.062749 TCCACTGTTCTTGTGACTAAATACT 57.937 36.000 0.00 0.00 37.60 2.12
4255 4518 4.191544 TGAGAAACTCCACTGTTCTTGTG 58.808 43.478 0.00 0.00 35.39 3.33
4289 4555 3.432749 GGCCTTCTAGATGTTGCTGATCA 60.433 47.826 0.00 0.00 0.00 2.92
4297 4563 4.215908 TGATACGAGGCCTTCTAGATGTT 58.784 43.478 6.77 0.00 0.00 2.71
4298 4564 3.833732 TGATACGAGGCCTTCTAGATGT 58.166 45.455 6.77 0.00 0.00 3.06
4337 4603 7.680442 TTTGTGCAGTAGTATTTGCTTATCA 57.320 32.000 9.97 3.75 40.87 2.15
4349 4615 3.750130 CAGAGCTTGATTTGTGCAGTAGT 59.250 43.478 0.00 0.00 0.00 2.73
4475 4742 4.528206 TCCAGCTCATGTACAGAAAAGAGA 59.472 41.667 0.33 0.00 0.00 3.10
4599 4874 1.203758 GACTTTAATGGTTTGGCGGGG 59.796 52.381 0.00 0.00 0.00 5.73
4638 4913 5.455899 GGGATAAGGAATGATGACTTCAGCT 60.456 44.000 0.00 0.00 37.89 4.24
4658 4933 7.331089 GGTACCCAAAATCTAGAATAGGGAT 57.669 40.000 22.46 12.88 39.78 3.85
4800 5083 3.119065 GGTTAGCAGGTTACAGAGGTCTC 60.119 52.174 0.00 0.00 0.00 3.36
4806 5089 6.592607 CGAAAATTAGGTTAGCAGGTTACAGA 59.407 38.462 0.00 0.00 0.00 3.41
4936 5219 7.375053 TGGTTCAAATAGCACAAGGATAAAAC 58.625 34.615 0.00 0.00 0.00 2.43
4948 5231 4.568072 TCCTAGCTTGGTTCAAATAGCA 57.432 40.909 14.12 0.00 36.11 3.49
4967 5250 4.771590 TGAATCTGTGCTCATTTGTTCC 57.228 40.909 0.00 0.00 0.00 3.62
5118 5919 3.499918 AGCACTCGTCTTTTTCAAGGATG 59.500 43.478 0.00 0.00 0.00 3.51
5132 5933 4.700692 TGTCTTAGTCAGAATAGCACTCGT 59.299 41.667 0.00 0.00 31.28 4.18
5138 5939 7.530010 TGCAAAAATGTCTTAGTCAGAATAGC 58.470 34.615 0.00 0.00 31.28 2.97
5150 5951 4.060205 GCATCAACCTGCAAAAATGTCTT 58.940 39.130 0.00 0.00 41.87 3.01
5311 6123 7.148272 ACAGCACGGTGTAGTTTTTAGTTTTTA 60.148 33.333 10.24 0.00 0.00 1.52
5312 6124 6.031471 CAGCACGGTGTAGTTTTTAGTTTTT 58.969 36.000 10.24 0.00 0.00 1.94
5313 6125 5.124297 ACAGCACGGTGTAGTTTTTAGTTTT 59.876 36.000 10.24 0.00 0.00 2.43
5314 6126 4.637091 ACAGCACGGTGTAGTTTTTAGTTT 59.363 37.500 10.24 0.00 0.00 2.66
5315 6127 4.193865 ACAGCACGGTGTAGTTTTTAGTT 58.806 39.130 10.24 0.00 0.00 2.24
5316 6128 3.800531 ACAGCACGGTGTAGTTTTTAGT 58.199 40.909 10.24 0.00 0.00 2.24
5317 6129 4.271533 TCAACAGCACGGTGTAGTTTTTAG 59.728 41.667 10.24 3.92 0.00 1.85
5356 6168 2.647299 TGTCCATGGGTTGTATCAGGTT 59.353 45.455 13.02 0.00 0.00 3.50
5416 6239 4.464262 GGAATGATCCGGTGGAGC 57.536 61.111 0.00 0.00 38.78 4.70
5434 6257 6.035435 CACTTCTTCACTTCCTCATATGTTCG 59.965 42.308 1.90 0.00 0.00 3.95
5465 6290 3.546815 CGGCAAGAAATAATGCTTCTCCG 60.547 47.826 0.00 0.00 35.35 4.63
5474 6299 2.143876 AGGTGGCGGCAAGAAATAAT 57.856 45.000 15.50 0.00 0.00 1.28
5475 6300 1.917872 AAGGTGGCGGCAAGAAATAA 58.082 45.000 15.50 0.00 0.00 1.40
5493 6322 1.186917 TGTTCCGTCTCCGCCCTTAA 61.187 55.000 0.00 0.00 0.00 1.85
5495 6324 2.920912 TGTTCCGTCTCCGCCCTT 60.921 61.111 0.00 0.00 0.00 3.95
5496 6325 3.692406 GTGTTCCGTCTCCGCCCT 61.692 66.667 0.00 0.00 0.00 5.19
5507 6336 1.222115 GGATATGCTCGCGGTGTTCC 61.222 60.000 6.13 1.98 0.00 3.62
5509 6338 0.107897 TTGGATATGCTCGCGGTGTT 60.108 50.000 6.13 0.00 0.00 3.32
5528 6357 3.524789 TCCAGATCAATCCACCAGACATT 59.475 43.478 0.00 0.00 0.00 2.71
5529 6358 3.117745 TCCAGATCAATCCACCAGACAT 58.882 45.455 0.00 0.00 0.00 3.06
5531 6360 2.503356 ACTCCAGATCAATCCACCAGAC 59.497 50.000 0.00 0.00 0.00 3.51
5534 6363 3.994317 TCTACTCCAGATCAATCCACCA 58.006 45.455 0.00 0.00 0.00 4.17
5535 6364 5.306678 AGAATCTACTCCAGATCAATCCACC 59.693 44.000 0.00 0.00 43.56 4.61
5536 6365 6.418057 AGAATCTACTCCAGATCAATCCAC 57.582 41.667 0.00 0.00 43.56 4.02
5537 6366 6.662865 GAGAATCTACTCCAGATCAATCCA 57.337 41.667 0.00 0.00 43.56 3.41
5573 6404 3.230245 CTCTAGCTCCAGGCCGGG 61.230 72.222 17.03 17.03 43.05 5.73
5575 6406 1.739049 CTTCTCTAGCTCCAGGCCG 59.261 63.158 0.00 0.00 43.05 6.13
5691 6526 2.020720 TGAAAGCTGGAAACGAGCAAA 58.979 42.857 8.27 0.00 37.08 3.68
5789 6630 4.105217 AGAATATCCACCATGAATGCCTCA 59.895 41.667 0.00 0.00 38.81 3.86
5809 6650 5.637810 GCGAATCCCATATCAATACGAAGAA 59.362 40.000 0.00 0.00 0.00 2.52
5810 6651 5.047306 AGCGAATCCCATATCAATACGAAGA 60.047 40.000 0.00 0.00 0.00 2.87
5811 6652 5.171476 AGCGAATCCCATATCAATACGAAG 58.829 41.667 0.00 0.00 0.00 3.79
5814 6655 5.444613 CGAAAGCGAATCCCATATCAATACG 60.445 44.000 0.00 0.00 40.82 3.06
5816 6657 5.789521 TCGAAAGCGAATCCCATATCAATA 58.210 37.500 0.00 0.00 44.78 1.90
5817 6658 4.641396 TCGAAAGCGAATCCCATATCAAT 58.359 39.130 0.00 0.00 44.78 2.57
5830 6680 1.019278 GCCTTGATGGTCGAAAGCGA 61.019 55.000 0.00 0.00 39.36 4.93
5833 6683 1.089920 CTGGCCTTGATGGTCGAAAG 58.910 55.000 3.32 0.00 45.26 2.62
5968 6841 8.876275 AACAATTTGCATCACCATATTCATAC 57.124 30.769 0.00 0.00 0.00 2.39
5979 6856 8.330302 GCCAGATAAATAAACAATTTGCATCAC 58.670 33.333 0.00 0.00 38.29 3.06
5995 6872 1.750682 GCCTCGGTTGGCCAGATAAAT 60.751 52.381 5.11 0.00 46.82 1.40
6061 6943 4.778534 TGAGCTACCACACTACACTTAC 57.221 45.455 0.00 0.00 0.00 2.34
6062 6944 4.320714 CGTTGAGCTACCACACTACACTTA 60.321 45.833 0.00 0.00 0.00 2.24
6063 6945 3.552273 CGTTGAGCTACCACACTACACTT 60.552 47.826 0.00 0.00 0.00 3.16
6064 6946 2.030185 CGTTGAGCTACCACACTACACT 60.030 50.000 0.00 0.00 0.00 3.55
6065 6947 2.030540 TCGTTGAGCTACCACACTACAC 60.031 50.000 0.00 0.00 0.00 2.90
6066 6948 2.232399 TCGTTGAGCTACCACACTACA 58.768 47.619 0.00 0.00 0.00 2.74
6203 7086 0.811616 CTCCTAACACGCATGAGCCC 60.812 60.000 0.00 0.00 37.52 5.19
6206 7089 1.751351 TCCTCTCCTAACACGCATGAG 59.249 52.381 0.00 0.00 0.00 2.90
6208 7091 1.204704 TGTCCTCTCCTAACACGCATG 59.795 52.381 0.00 0.00 0.00 4.06
6233 7116 4.584327 ACAAAAAGAATCTTTCACGGGG 57.416 40.909 8.86 0.00 0.00 5.73
6354 7238 4.452455 ACTTAAATGCTCCAAGTGACTTCG 59.548 41.667 0.00 0.00 31.47 3.79
6361 7245 5.133221 ACTGTTGACTTAAATGCTCCAAGT 58.867 37.500 0.00 0.00 35.27 3.16
6368 7252 4.394795 CGTGCTACTGTTGACTTAAATGC 58.605 43.478 0.00 0.00 0.00 3.56
6404 7288 3.462021 GTGACTCCTTGCATCATACTCC 58.538 50.000 0.00 0.00 0.00 3.85
6405 7289 3.462021 GGTGACTCCTTGCATCATACTC 58.538 50.000 0.00 0.00 0.00 2.59
6406 7290 2.171448 GGGTGACTCCTTGCATCATACT 59.829 50.000 0.00 0.00 36.25 2.12
6407 7291 2.092968 TGGGTGACTCCTTGCATCATAC 60.093 50.000 0.00 0.00 36.25 2.39
6408 7292 2.171237 CTGGGTGACTCCTTGCATCATA 59.829 50.000 0.00 0.00 36.25 2.15
6409 7293 0.994247 TGGGTGACTCCTTGCATCAT 59.006 50.000 0.00 0.00 36.25 2.45
6426 7585 2.332063 ATTAATGGCCGAGTGTCTGG 57.668 50.000 0.00 0.00 0.00 3.86
6447 7606 0.535780 CCATCGTGCCATACTGCCAT 60.536 55.000 0.00 0.00 0.00 4.40
6448 7607 1.153188 CCATCGTGCCATACTGCCA 60.153 57.895 0.00 0.00 0.00 4.92
6449 7608 0.105964 TACCATCGTGCCATACTGCC 59.894 55.000 0.00 0.00 0.00 4.85
6450 7609 1.800586 CATACCATCGTGCCATACTGC 59.199 52.381 0.00 0.00 0.00 4.40
6451 7610 1.800586 GCATACCATCGTGCCATACTG 59.199 52.381 0.00 0.00 35.35 2.74
6452 7611 1.694150 AGCATACCATCGTGCCATACT 59.306 47.619 0.00 0.00 42.20 2.12
6453 7612 2.169832 AGCATACCATCGTGCCATAC 57.830 50.000 0.00 0.00 42.20 2.39
6454 7613 2.928801 AAGCATACCATCGTGCCATA 57.071 45.000 0.00 0.00 42.20 2.74
6514 7949 1.726853 GCAGTCGCTGATAAGTGGTT 58.273 50.000 10.46 0.00 32.44 3.67
6515 7950 0.458543 CGCAGTCGCTGATAAGTGGT 60.459 55.000 10.46 0.00 32.44 4.16
6516 7951 0.179137 TCGCAGTCGCTGATAAGTGG 60.179 55.000 10.46 0.00 32.44 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.